Citrus Sinensis ID: 013109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M390 | 570 | Peptide transporter PTR1 | yes | no | 0.984 | 0.775 | 0.675 | 0.0 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.982 | 0.773 | 0.660 | 0.0 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.957 | 0.735 | 0.629 | 1e-160 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.948 | 0.722 | 0.571 | 1e-146 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.873 | 0.719 | 0.528 | 1e-125 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.964 | 0.726 | 0.468 | 1e-107 | |
| Q9LQL2 | 614 | Nitrate transporter 1.5 O | no | no | 0.897 | 0.656 | 0.449 | 1e-100 | |
| Q8GXN2 | 589 | Nitrate transporter 1.8 O | no | no | 0.910 | 0.694 | 0.446 | 1e-100 | |
| Q3E9B5 | 609 | Putative peptide/nitrate | no | no | 0.906 | 0.668 | 0.436 | 3e-99 | |
| Q93VV5 | 591 | Probable peptide/nitrate | no | no | 0.946 | 0.719 | 0.425 | 1e-96 |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/462 (67%), Positives = 370/462 (80%), Gaps = 20/462 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV GLKP G +TC +Q+A FFVALY+IALGTGGIKPCVSS+GAD
Sbjct: 110 MTLLTLSASVPGLKP---GNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFD+ DE EK KSSFFNWFYFSIN+GALIA++VLVWIQ N GWGWGFG+P VAM IAV
Sbjct: 167 QFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVC 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
FF G+R +R Q+PGGSPLTRI QV+ A+ RK V++P DKSLL+ETAD ESNI GSRKL
Sbjct: 227 FFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKE-SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
HT + FFDKAAVE QSD+IK+ VNPWRLC+VTQVEELK+I+ LLP+WATGI+F+ VY
Sbjct: 287 VHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQMS++FVLQG MD H+G +F+IP ASLS+FDT+SV+FW P+YD+FI+P+ RKFT ++
Sbjct: 347 SQMSTMFVLQGNTMDQHMG-KNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE 405
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
G TQLQRMGIGL +SI +MI A VLE++RL V+ HN YD ++ MSI WQ+PQY LIG
Sbjct: 406 RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIG 465
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFY+QAPDAMRSLCSALSLTTVALGNYLS++LVT+V I+ KNG GW
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGW 525
Query: 420 IPDNLNRGHLHYFFWLLT-----------W----YTYKRPVG 446
IPDNLNRGHL YFF+LL W Y YK+ VG
Sbjct: 526 IPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAVG 567
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/462 (66%), Positives = 362/462 (78%), Gaps = 21/462 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV GL P C G ETC T Q+A F+ALYLIALGTGGIKPCVSS+GAD
Sbjct: 111 MTLLTISASVPGLTPTCSG----ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD DE EK+ KSSFFNWFYF IN+GA+IASSVLVWIQ N GWGWG G+P VAMAIAVV
Sbjct: 167 QFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVV 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
FF+G+ +R QKPGGSPLTR+ QV+ AS RK KV++P D+SLLYE DAES+I GSRKL
Sbjct: 227 FFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKES-VNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
+HTK +FFDKAAVE +SDN + + W+LCTVTQVEELKA++RLLPIWATGI+F++VY
Sbjct: 287 EHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQM ++FVLQG +D H+G +FKIP ASLS+FDTLSV+FW P+YD+ IVP RK+TGH+
Sbjct: 347 SQMGTVFVLQGNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE 405
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
G TQLQR+GIGL ISI SM++A +LE+ RL V+ HN Y+ +PM+I WQVPQYFL+G
Sbjct: 406 RGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVG 465
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFY+QAPDAMRSLCSALSLT +A GNYLS+ LVT+VT ++ G GW
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGW 525
Query: 420 IPDNLNRGHLHYFFWLLT---------------WYTYKRPVG 446
I NLN GHL YFFWLL WYTYK+ G
Sbjct: 526 IAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTG 567
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/440 (62%), Positives = 340/440 (77%), Gaps = 10/440 (2%)
Query: 1 MTFLTVTASVSGLKPV-CHGPRGEETC-QVTDAQSATFFVALYLIALGTGGIKPCVSSYG 58
M+ LT++ASV LKP C G + C T AQ A FF LYLIALGTGGIKPCVSS+G
Sbjct: 127 MSALTLSASVPALKPAECIG----DFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFG 182
Query: 59 ADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA 118
ADQFDD D E+ K+SFFNWFYFSINIGAL++SS+LVWIQ+N GWG GFGIP V M +A
Sbjct: 183 ADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLA 242
Query: 119 VVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSR 178
+ SFF GT L+R QKPGGSP+TRI QVV AS RK V++P D +LLYET D S I GSR
Sbjct: 243 IASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSR 302
Query: 179 KLDHTKDFSFFDKAAVEIQSDNIK-ESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSA 237
K++HT D + DKAAV + ++ + N WRLCTVTQVEELK ++R+ PIWA+GIIFSA
Sbjct: 303 KIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSA 362
Query: 238 VYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTG 297
VY+QMS++FV QG M+ +G SF++PPA+L FDT SVI WVP+YDRFIVP+ RKFTG
Sbjct: 363 VYAQMSTMFVQQGRAMNCKIG--SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTG 420
Query: 298 HKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL-PEMPMSIMWQVPQYF 356
G T++QRMGIGLF+S+L M AAA++E+IRL M + + +P+S++WQ+PQYF
Sbjct: 421 VDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYF 480
Query: 357 LIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGN 416
++G AEVF FIGQLEFFY+Q+PDAMRSLCSAL+L T ALGNYLSSL++T+VT +T+NG
Sbjct: 481 ILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQ 540
Query: 417 LGWIPDNLNRGHLHYFFWLL 436
GWI DNLN GHL YFFWLL
Sbjct: 541 EGWISDNLNSGHLDYFFWLL 560
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
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Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/439 (57%), Positives = 325/439 (74%), Gaps = 13/439 (2%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGA 59
M LT++AS+ LKP C T Q A FF LYLIALGTGGIKPCVSS+GA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197
Query: 60 DQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAV 119
DQFDD D E+ K+SFFNWFYFSINIG+ I+S++LVW+Q+N GWG GF IP V M +++
Sbjct: 198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257
Query: 120 VSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRK 179
SFF GT L+R QKPGGSP+TR+CQV+ A+ RK K+ LP D S LYET + S I GSRK
Sbjct: 258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRK 317
Query: 180 LDHTKDFSFFDKAAV--EIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSA 237
+ HT + F DKAAV E +S + S NPW+LCTVTQVEE+K ++R+ PIWA+GI++S
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 238 VYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTG 297
+YSQ+S+LFV QG M+ + SF+IPPAS +FDTL V+ +PIYDRF+VP R+FTG
Sbjct: 377 LYSQISTLFVQQGRSMNRII--RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 298 HKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357
GLT LQRMGIGLF+S+LS+ AAA++E +RL++ ++ + MSI WQ+PQY L
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF-------VAMSIFWQIPQYIL 487
Query: 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNL 417
+G AEVF FIG++EFFY+++PDAMRS+CSAL+L A+G+YLSSL++T+V + G
Sbjct: 488 MGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKD 547
Query: 418 GWIPDNLNRGHLHYFFWLL 436
GW+PD+LN+GHL YFFWLL
Sbjct: 548 GWVPDDLNKGHLDYFFWLL 566
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/439 (52%), Positives = 303/439 (69%), Gaps = 47/439 (10%)
Query: 1 MTFLTVTASVSGLKPV-CHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGA 59
M LT++ASV GLKP C G V QS F LYLIALGTGGIKPCVSS+GA
Sbjct: 128 MVALTLSASVPGLKPAECIGSLCPPATMV---QSTVLFSGLYLIALGTGGIKPCVSSFGA 184
Query: 60 DQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAV 119
DQFD D +E+ K+SFFNWFYF+INIGA ++S+VLVWIQ+N GW GF IP V M +A
Sbjct: 185 DQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLAT 244
Query: 120 VSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRK 179
+SFF GT L+R QKP GSP+T +CQV+ A+ RK +++P D + + DA +N
Sbjct: 245 MSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDST---DEGDANTN------ 295
Query: 180 LDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
PW+LCTVTQVEE+K ++RL+PIWA+GIIFS ++
Sbjct: 296 ---------------------------PWKLCTVTQVEEVKILLRLVPIWASGIIFSVLH 328
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQ+ +LFV QG M +G F+IPPA+L +FDT SV+ VPIYDR IVP+ R+FTG
Sbjct: 329 SQIYTLFVQQGRCMKRTIG--LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLA 386
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM-PMSIMWQVPQYFLI 358
G T+LQRMGIGLF+S+LS+ AA++E +RL++ R+ + + ++ P++I WQ+PQYFL+
Sbjct: 387 KGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLM 446
Query: 359 GCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLG 418
G A VF F+G++EFFYEQ+PD+MRSLCSA +L T LGNYLSSL++T+V +S K+
Sbjct: 447 GTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKD---C 503
Query: 419 WIP-DNLNRGHLHYFFWLL 436
WIP DN+N GHL YFFWLL
Sbjct: 504 WIPSDNINNGHLDYFFWLL 522
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/444 (46%), Positives = 294/444 (66%), Gaps = 11/444 (2%)
Query: 1 MTFLTVTASVSGLKPV-CHGPRGEETCQVTD-AQSATFFVALYLIALGTGGIKPCVSSYG 58
MT LT++A + L+P C +GEE C V D AQ + +VAL L ALG+GGI+PCV ++G
Sbjct: 109 MTLLTISAIIPTLRPPPC---KGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFG 165
Query: 59 ADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA 118
ADQFD++D + ++FNW+YF + L+A +VLVWIQDN GWG G GIP VAM ++
Sbjct: 166 ADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLS 225
Query: 119 VVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSR 178
V++F G +L+R+ P GSP TR+ QV A+ RK K+ + +D SLLY + ++ I+
Sbjct: 226 VIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGG 285
Query: 179 KLDHTKDFSFFDKAAVEIQSDNIK--ESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFS 236
KL HTK SF DKAA+ + DN+K + N WRL TV +VEELK+++R+ PI A+GI+
Sbjct: 286 KLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLI 345
Query: 237 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFT 296
Y+Q + + Q + M+ H+ N SF+IP S+S+F T++++ + YDR V V RKFT
Sbjct: 346 TAYAQQGTFSLQQAKTMNRHLTN-SFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFT 404
Query: 297 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE--MPMSIMWQVPQ 354
G + G+T L RMGIG ISI++ + A +E+ R + EH D P +P+S +W +PQ
Sbjct: 405 GLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQ 464
Query: 355 YFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKN 414
Y L G AE F IG LEFFY+QAP++MRS +AL +++GNY+S+LLVT+V S K
Sbjct: 465 YGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKP 524
Query: 415 GNLGWIPD-NLNRGHLHYFFWLLT 437
W+PD NLNRG L YF+WL+T
Sbjct: 525 DGSNWLPDNNLNRGRLEYFYWLIT 548
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/412 (44%), Positives = 269/412 (65%), Gaps = 9/412 (2%)
Query: 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL 95
F+ ++YLIALG GG +P +++ GADQFD+ E K +FF++FY ++N+G+L ++++L
Sbjct: 158 FYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTIL 217
Query: 96 VWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKV 155
+ +D W GF + I ++ F GT +R KP G+PL+R CQV+ A+ +K V
Sbjct: 218 GYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSV 277
Query: 156 ELPADKSLLYETADAE---SNITGSRKLDHTKDFSFFDKAA---VEIQSDNIKESVNPWR 209
E P D+E +++ R++ HT +F F DKAA D ++SVNPWR
Sbjct: 278 EAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNPWR 337
Query: 210 LCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASL 269
LC VTQVEE+K I+RL+PIW II+S V++QM+SLFV QG M+T V S FKIPPAS+
Sbjct: 338 LCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTSV--SDFKIPPASM 395
Query: 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGH-KNGLTQLQRMGIGLFISILSMIAAAVLELI 328
S FD LSV ++ +Y R + PV +F + G+T+L RMGIGL I++++MIAA ++E
Sbjct: 396 SSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAVIAMIAAGIVECY 455
Query: 329 RLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL 388
RL+ + + +SI WQ PQY LIG +EVF ++GQLEFF Q PD ++S SAL
Sbjct: 456 RLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSAL 515
Query: 389 SLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYT 440
+ ++++GN++SSLLVT+V IST++ GWIP NLN+GHL F++LL T
Sbjct: 516 CMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLLAALT 567
|
Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 284/432 (65%), Gaps = 23/432 (5%)
Query: 26 CQVTDA--------QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF 77
C V D+ ++ F++++YLIALG GG +P ++++GADQFD D E K +FF
Sbjct: 131 CGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFF 190
Query: 78 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGS 137
++FY ++N+G+L +++VL + +D W GF A + +V F GT +R+ P S
Sbjct: 191 SYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRES 250
Query: 138 PLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQ 197
P +R CQV+ A+ RK K+++ ++ LY D+E+ TG +K+ HTK F F D+AA+ +
Sbjct: 251 PWSRFCQVLVAATRKAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAI-VT 306
Query: 198 SDNIKESV------NPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 251
D+ E V +PWRLC+VTQVEE+K ++RLLPIW I++S V++QM+SLFV+QG
Sbjct: 307 PDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGA 366
Query: 252 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKF--TGHKNGLTQLQRMG 309
M T++ N F+IP +S+S FD LSV F++ Y RF+ P+ + T GLT+LQRMG
Sbjct: 367 AMKTNIKN--FRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMG 424
Query: 310 IGLFISILSMIAAAVLELIRLRMVR-EHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIG 368
IGL I+I++MI+A ++E+ RL+ E +SI WQVPQY LIG +EVF ++G
Sbjct: 425 IGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVG 484
Query: 369 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGH 428
QLEFF QAP ++S SAL + +++LGNY+SSLLV+IV IST + GWIP+NLN+GH
Sbjct: 485 QLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGH 544
Query: 429 LHYFFWLLTWYT 440
L F++LL T
Sbjct: 545 LERFYFLLAGLT 556
|
Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 273/426 (64%), Gaps = 19/426 (4%)
Query: 13 LKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH 72
+KP G E + A F++++YL+A G GG +P ++++GADQ DD +K
Sbjct: 157 IKPRGCGDGDLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATFGADQLDD----DKNS 212
Query: 73 KSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ 132
K++FF++FYF++N+GAL ++++LV+ +D W GF + + +A+V+F + TR +R
Sbjct: 213 KAAFFSYFYFALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYV 272
Query: 133 KPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKA 192
KP G+PL R+ QV A+ RK V P D LYE ES I GSRK+ H+ F F D+A
Sbjct: 273 KPCGNPLPRVAQVFVATARKWSVVRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRA 332
Query: 193 AVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGER 252
AV ++D N WRLC+VTQVEE K +++LLPIW II+S +++QM+SLFV QG+
Sbjct: 333 AVITENDRNGTRSNAWRLCSVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDV 392
Query: 253 MDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGL 312
M+ +VG F IP AS+S+FD SV IY I P R T+L RMGIGL
Sbjct: 393 MNAYVGK--FHIPAASMSVFDIFSVFVSTGIYRHIIFPYVRP--------TELMRMGIGL 442
Query: 313 FISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEF 372
I I++M+AA + E+ RL+ V E ++I+WQ+PQY L+G +EVF ++GQLEF
Sbjct: 443 IIGIMAMVAAGLTEIQRLKRVVPGQ----KESELTILWQIPQYVLVGASEVFMYVGQLEF 498
Query: 373 FYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNL-GWIPDNLNRGHLHY 431
F QAPD +++L S+L + ++ALGNY+SSL+V IV +I+ + N GWIP+NLN GH+
Sbjct: 499 FNGQAPDGLKNLGSSLCMASMALGNYVSSLMVNIVMAITKRGENSPGWIPENLNEGHMDR 558
Query: 432 FFWLLT 437
F++L+
Sbjct: 559 FYFLIA 564
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 186/437 (42%), Positives = 275/437 (62%), Gaps = 12/437 (2%)
Query: 3 FLTVTASVSGLKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQ 61
L+V A + LKP P ++TC+ ++ FF+ALYL+ALG+G +KP + ++GADQ
Sbjct: 129 LLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQ 188
Query: 62 FDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS 121
F + + K SS+FN YF+ ++G LIA ++LVW+Q + G GFG+ A AM + ++S
Sbjct: 189 FSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIIS 248
Query: 122 FFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLD 181
SGT FRN++P S T I V+ A+I K K+ P+D +L+ +++ S L
Sbjct: 249 LVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLP 308
Query: 182 HTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQ 241
HT F F DKA ++IQ N KES PWRLCTVTQVE++K ++ L+PI+A+ I+F+ + +Q
Sbjct: 309 HTPRFRFLDKACIKIQDTNTKES--PWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQ 366
Query: 242 MSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNG 301
+ + V QG M+T + N SF IPPASL + +IF VP+YD F+VP RK TGH +G
Sbjct: 367 LQTFSVQQGSSMNTRLSN-SFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSG 425
Query: 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361
+ L R+GIGLF+S SM++AA+LE R R+ + D +SI W PQ+ + G +
Sbjct: 426 IPPLTRIGIGLFLSTFSMVSAAMLEKKR----RDSSVLD--GRILSIFWITPQFLIFGIS 479
Query: 362 EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI-STKNGNLGWI 420
E+FT +G +EFFY+Q+ M S AL+ + + G Y SS+LV++V I ST + GW+
Sbjct: 480 EMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWL 539
Query: 421 PDN-LNRGHLHYFFWLL 436
+N LN+ L F+WLL
Sbjct: 540 GENDLNKDRLDLFYWLL 556
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | ||||||
| 356539537 | 572 | PREDICTED: peptide transporter PTR1-like | 0.997 | 0.783 | 0.786 | 0.0 | |
| 356566147 | 572 | PREDICTED: peptide transporter PTR1-like | 0.997 | 0.783 | 0.784 | 0.0 | |
| 224054566 | 570 | predicted protein [Populus trichocarpa] | 0.993 | 0.782 | 0.780 | 0.0 | |
| 224104319 | 570 | predicted protein [Populus trichocarpa] | 0.993 | 0.782 | 0.775 | 0.0 | |
| 255558808 | 571 | peptide transporter, putative [Ricinus c | 0.993 | 0.781 | 0.735 | 0.0 | |
| 395146502 | 571 | putative peptide transporter [Linum usit | 0.993 | 0.781 | 0.746 | 0.0 | |
| 297745947 | 569 | unnamed protein product [Vitis vinifera] | 0.991 | 0.782 | 0.756 | 0.0 | |
| 225434680 | 582 | PREDICTED: peptide transporter PTR1-like | 0.991 | 0.764 | 0.756 | 0.0 | |
| 449450790 | 570 | PREDICTED: peptide transporter PTR1-like | 0.988 | 0.778 | 0.754 | 0.0 | |
| 449496606 | 570 | PREDICTED: LOW QUALITY PROTEIN: peptide | 0.988 | 0.778 | 0.754 | 0.0 |
| >gi|356539537|ref|XP_003538254.1| PREDICTED: peptide transporter PTR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/464 (78%), Positives = 400/464 (86%), Gaps = 16/464 (3%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV G+KP CHG G+E C T +SA F+ALYLIALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLTLSASVPGIKPTCHG-HGDENCHATTLESAVCFLALYLIALGTGGIKPCVSSYGAD 168
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD D AEK+HKSSFFNWFYFSINIGALIASS+LVWIQDN GWGWGFGIPAVAMAIAVV
Sbjct: 169 QFDDTDPAEKEHKSSFFNWFYFSINIGALIASSLLVWIQDNVGWGWGFGIPAVAMAIAVV 228
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRL+RNQKPGGS LTRICQVV ASIRK+KVE+PAD+SLLYETA+ ES I GSRKL
Sbjct: 229 SFFSGTRLYRNQKPGGSALTRICQVVVASIRKYKVEVPADESLLYETAETESAIKGSRKL 288
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240
DHT + FFDKA V +SD +KES NPWRLCTVTQVEELK+I+RLLP+WATGIIFS VY
Sbjct: 289 DHTDELRFFDKATVLARSDKVKESTNPWRLCTVTQVEELKSILRLLPVWATGIIFSTVYG 348
Query: 241 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN 300
QMS+LFVLQG+ MDT VGNS+FKIPPASLSIFDTLSVIFWVP+YDR IVP+ RKFTG+KN
Sbjct: 349 QMSTLFVLQGQTMDTRVGNSTFKIPPASLSIFDTLSVIFWVPVYDRIIVPIARKFTGYKN 408
Query: 301 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360
GLTQLQRMGIGLFISI SM+AAA+LELIRLRMVR H+YY L E+PM+I WQVPQYF+IGC
Sbjct: 409 GLTQLQRMGIGLFISIFSMVAAAILELIRLRMVRRHDYYQLEEIPMTIFWQVPQYFVIGC 468
Query: 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 420
AEVF FIGQLEFFYEQAPDAMRS CSALSLTTVALG YLSSLLVTIVT I+T+NG GWI
Sbjct: 469 AEVFYFIGQLEFFYEQAPDAMRSFCSALSLTTVALGQYLSSLLVTIVTKITTRNGRPGWI 528
Query: 421 PDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
PDNLN GH+ YFFWLL YTYKRPVG+LR
Sbjct: 529 PDNLNFGHIDYFFWLLALLSVVNLIAFLVVSMLYTYKRPVGTLR 572
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566147|ref|XP_003551296.1| PREDICTED: peptide transporter PTR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/464 (78%), Positives = 400/464 (86%), Gaps = 16/464 (3%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV G+KP CHG G+E C+ T +SA F+ALYLIALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLTLSASVPGIKPTCHG-HGDENCRATTLESAVCFLALYLIALGTGGIKPCVSSYGAD 168
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD D AEK+ KSSFFNWFYFSINIGALIASS+LVWIQDN GWGWGFGIPAVAMAIAVV
Sbjct: 169 QFDDTDSAEKERKSSFFNWFYFSINIGALIASSLLVWIQDNVGWGWGFGIPAVAMAIAVV 228
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRL+RNQKPGGS +TRICQVV ASIRK+ VE+PAD+SLLYETA+ ES I GSRKL
Sbjct: 229 SFFSGTRLYRNQKPGGSAITRICQVVMASIRKYNVEVPADESLLYETAETESAIKGSRKL 288
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240
DHT + FFDKAAV QSD +KES NPWRLCTVTQVEELK+I+R+LP+WATGIIFS VY
Sbjct: 289 DHTNELRFFDKAAVLAQSDKVKESTNPWRLCTVTQVEELKSILRILPVWATGIIFSTVYG 348
Query: 241 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN 300
QMS+LFVLQG+ MDT VGNS+FKIPPASLSIFDTLSVIFWVP+YDR IVP+ KFTG+KN
Sbjct: 349 QMSTLFVLQGQTMDTRVGNSTFKIPPASLSIFDTLSVIFWVPVYDRIIVPIATKFTGNKN 408
Query: 301 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360
GLTQLQRMGIGLFISI SM+AAA+LELIRLRMVR HNYY L E+PM+I WQVPQYF+IGC
Sbjct: 409 GLTQLQRMGIGLFISIFSMVAAAILELIRLRMVRRHNYYQLEEIPMTIFWQVPQYFIIGC 468
Query: 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 420
AEVF FIGQLEFFYEQAPDAMRS CSALSLTTVALG YLSSLLVTIVT IST+NG+ GWI
Sbjct: 469 AEVFYFIGQLEFFYEQAPDAMRSFCSALSLTTVALGQYLSSLLVTIVTKISTRNGSPGWI 528
Query: 421 PDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
PDNLN GH+ YFFWLL YTYKRPVG+LR
Sbjct: 529 PDNLNFGHIDYFFWLLALLSVVNLIAFLVVSMLYTYKRPVGTLR 572
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054566|ref|XP_002298324.1| predicted protein [Populus trichocarpa] gi|222845582|gb|EEE83129.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/464 (78%), Positives = 402/464 (86%), Gaps = 18/464 (3%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++A+V GL+P C+ E+ C TDAQSA FV+LYLIALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLTISATVPGLRPKCYA---EDDCNPTDAQSALAFVSLYLIALGTGGIKPCVSSYGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDDADE EKKHKSSFFNWFY SIN+GALIA SVLVW+QDN WGWGFGIPA+AMAIAV
Sbjct: 167 QFDDADEVEKKHKSSFFNWFYLSINVGALIAGSVLVWVQDNVSWGWGFGIPAIAMAIAVA 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRLFR QKPGGSPLTRICQV+ AS RK KVE+PADK+LLYETADAESNI GSRKL
Sbjct: 227 SFFSGTRLFRYQKPGGSPLTRICQVLLASFRKKKVEVPADKALLYETADAESNIKGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240
DHT++FSF DKAAVE + D+IK V+PWRLCTVTQVEELK+I+RLLPIWATGIIF+AVYS
Sbjct: 287 DHTEEFSFLDKAAVETEKDDIKGPVDPWRLCTVTQVEELKSIIRLLPIWATGIIFTAVYS 346
Query: 241 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN 300
QM +LFVLQGE+MD +VGNS+F+IP ASLSIFDTLSVIFWVP+YDR IVPV RK+TGHKN
Sbjct: 347 QMGNLFVLQGEQMDKYVGNSNFQIPSASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHKN 406
Query: 301 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360
GLTQLQRMGIGLFISI SM++AA+LEL RL MVR HN Y+L +P+SI WQ PQYFLIGC
Sbjct: 407 GLTQLQRMGIGLFISIFSMVSAAILELKRLEMVRRHNSYELKTVPLSIFWQAPQYFLIGC 466
Query: 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 420
AEVFTFIGQLEFFYEQAPDAMRS+CSALSLTTVALG+YLSSLLVTIVTSISTKNG GWI
Sbjct: 467 AEVFTFIGQLEFFYEQAPDAMRSMCSALSLTTVALGSYLSSLLVTIVTSISTKNGKPGWI 526
Query: 421 PDNLNRGHLHYFFWLL---------------TWYTYKRPVGSLR 449
P+NLN GH+ YFFWLL WYTYK+PVG+LR
Sbjct: 527 PENLNYGHIDYFFWLLGVLSVLNLCVFLLISNWYTYKKPVGTLR 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104319|ref|XP_002313394.1| predicted protein [Populus trichocarpa] gi|222849802|gb|EEE87349.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/464 (77%), Positives = 400/464 (86%), Gaps = 18/464 (3%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++A+V GL+P C+ ++ C T Q+A FVALYLIALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLTMSATVHGLRPECYS---KDHCHPTGGQTAVTFVALYLIALGTGGIKPCVSSYGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDDADE EKKHKSSFFNWFY SIN+GALIA SVLVWIQDN WGWGFGIPA+AMAIAVV
Sbjct: 167 QFDDADETEKKHKSSFFNWFYLSINVGALIAGSVLVWIQDNVSWGWGFGIPAIAMAIAVV 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGT+LFR QKPGGSPLTRICQV+ AS RK KVE+PADKSLL+ETADAESNI GSRKL
Sbjct: 227 SFFSGTKLFRYQKPGGSPLTRICQVLVASFRKQKVEVPADKSLLHETADAESNIKGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240
DHT++FSF DKAAVE + D+IK + +PW LCTVTQVEELKAI+RLLPIWATGIIFSAVYS
Sbjct: 287 DHTEEFSFLDKAAVETEKDDIKGTGDPWNLCTVTQVEELKAIIRLLPIWATGIIFSAVYS 346
Query: 241 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN 300
QM +LFVLQGE MD VGNS+F+IP ASLSIFDTLSVIFWVP+YDR IVPV RKFTGHKN
Sbjct: 347 QMGNLFVLQGETMDKFVGNSTFEIPSASLSIFDTLSVIFWVPVYDRIIVPVARKFTGHKN 406
Query: 301 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360
GLTQLQRMGIGLFISI +M++AA+LEL RL+MVR +NYY+L +P+SI WQVPQYFLIGC
Sbjct: 407 GLTQLQRMGIGLFISIFAMVSAAILELKRLQMVRNNNYYELDSVPISIFWQVPQYFLIGC 466
Query: 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 420
AEVFTFIGQLEFFYEQAPDAMRS+CSALSLTTVALGNYLSSLLVTIVT+ISTKNG GWI
Sbjct: 467 AEVFTFIGQLEFFYEQAPDAMRSMCSALSLTTVALGNYLSSLLVTIVTTISTKNGKAGWI 526
Query: 421 PDNLNRGHLHYFFWLL---------------TWYTYKRPVGSLR 449
PDNLN GH+ YFFWLL WYTYK+ +G+LR
Sbjct: 527 PDNLNYGHIDYFFWLLGMLSVLNLGAFLLISNWYTYKKAIGTLR 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558808|ref|XP_002520427.1| peptide transporter, putative [Ricinus communis] gi|223540269|gb|EEF41840.1| peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/465 (73%), Positives = 402/465 (86%), Gaps = 19/465 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT L ++AS+ G+KP C+ ++ C TDAQSA FF+ALYL+ALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLALSASIPGIKPKCYA---KDDCDPTDAQSAVFFLALYLVALGTGGIKPCVSSYGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD DE EKKHK SFFNWFYFSIN+G LIASSVLV++Q N WGWGFGIPA+AMAIAVV
Sbjct: 167 QFDDTDENEKKHKGSFFNWFYFSINVGGLIASSVLVYVQMNWSWGWGFGIPAIAMAIAVV 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETA-DAESNITGSRK 179
SFFSGT+L+RNQKPGGSP TR+ QV+ ASI+K+K+++PADK+LLYE + DAESNI GSR+
Sbjct: 227 SFFSGTKLYRNQKPGGSPFTRLFQVIVASIKKYKIKVPADKALLYEISNDAESNIKGSRR 286
Query: 180 LDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
+DHTKDFSFFDKAAVE ++DN+K+SV+PW+LCTVTQVEELK+I+RLLP+WATGIIF+AVY
Sbjct: 287 IDHTKDFSFFDKAAVETETDNVKDSVDPWKLCTVTQVEELKSIIRLLPVWATGIIFAAVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQMS+LFVLQG++M+ +VGNSSFKIP ASLS+FDTLSVIFWVPIYDR + P RKFTGHK
Sbjct: 347 SQMSNLFVLQGDQMNKYVGNSSFKIPSASLSVFDTLSVIFWVPIYDRILAPFVRKFTGHK 406
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
NG TQLQRMGIGL IS+ +M++AAVLEL RL+MVR HNYY+L E+P+S+ WQVPQYFLIG
Sbjct: 407 NGFTQLQRMGIGLVISVFAMVSAAVLELTRLQMVRRHNYYELKEVPISVFWQVPQYFLIG 466
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFY++APDAMRSLCSALSLTTVALGNYLSSLLVTI SI+ +NG GW
Sbjct: 467 CAEVFTFIGQLEFFYQEAPDAMRSLCSALSLTTVALGNYLSSLLVTITMSITARNGKPGW 526
Query: 420 IPDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
IPDNLN GH+ YFFW+L WYTYK P+G+LR
Sbjct: 527 IPDNLNYGHIDYFFWVLAVLSVLNLGAFLFISKWYTYKTPLGTLR 571
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395146502|gb|AFN53657.1| putative peptide transporter [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/465 (74%), Positives = 392/465 (84%), Gaps = 19/465 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT L ++ASV GLKP C ++ C T+ QSA FFVALY+IALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLAMSASVPGLKPTC---ISKDNCHATEGQSAVFFVALYMIALGTGGIKPCVSSYGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDDAD EK+HK+SFFNWFYFSIN+GAL+ASS+LVW+Q+N WG GFGIPA+AMAIAV
Sbjct: 167 QFDDADVEEKEHKASFFNWFYFSINVGALVASSLLVWVQENVSWGLGFGIPAIAMAIAVA 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTR +R Q PGGSPLTRICQV+ AS RK+KV P DKSLLYE+AD+ES ITGSRKL
Sbjct: 227 SFFSGTRKYRYQTPGGSPLTRICQVIVASCRKYKVSPPNDKSLLYESADSESGITGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKE-SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
DHTKDFSF DKAAVE + D+IK+ SVNPWRLCTVTQ+EE KAI+RLLPIWATGI+F+AVY
Sbjct: 287 DHTKDFSFLDKAAVETEKDHIKDTSVNPWRLCTVTQIEEFKAIIRLLPIWATGIVFAAVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQMS+LFVLQG+ MD VGNS FKI A++S+FDT+SVIFWVPIYDR IVP RK TGHK
Sbjct: 347 SQMSNLFVLQGDTMDKRVGNSKFKISAANVSVFDTISVIFWVPIYDRLIVPAVRKITGHK 406
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
NG TQLQRMGIGL ISI +M+ A+LELIRL+MVREHNYY+L +P+SI WQVPQYFLIG
Sbjct: 407 NGFTQLQRMGIGLVISIFAMVYPAILELIRLKMVREHNYYELESVPISIFWQVPQYFLIG 466
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT ++TK G GW
Sbjct: 467 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTGVTTKGGKPGW 526
Query: 420 IPDNLNRGHLHYFFWLL---------------TWYTYKRPVGSLR 449
IPDNLN GH+ YFFWLL +WYTYK+PVG+LR
Sbjct: 527 IPDNLNYGHVDYFFWLLAVLSVVNLMAYMVIASWYTYKKPVGTLR 571
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745947|emb|CBI16003.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/464 (75%), Positives = 394/464 (84%), Gaps = 19/464 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LTVTASV GLKP C P G C T+ Q+A F+ALYL+ALGTGGIKPCVSSYGAD
Sbjct: 110 MTLLTVTASVPGLKPNC-SPSG--VCDPTETQTAVCFLALYLVALGTGGIKPCVSSYGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD DE EK HKSSFFNWFY SIN+GALIA S+LVWIQ+N GWG GFGIPA AMAIAVV
Sbjct: 167 QFDDTDEHEKTHKSSFFNWFYLSINVGALIAGSILVWIQENIGWGVGFGIPAAAMAIAVV 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRL+RNQKPGGSPLTR+ QVV AS++K++V++PADKSLLYE AD ES I GSRKL
Sbjct: 227 SFFSGTRLYRNQKPGGSPLTRMSQVVVASLKKYRVQVPADKSLLYEIADGESGIQGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240
DHTKD SFFDKAAVEIQSD+IK+S +PW++CTVTQVEELKAI+RLLP+WATGIIFSAVYS
Sbjct: 287 DHTKDLSFFDKAAVEIQSDHIKDSPDPWKICTVTQVEELKAIIRLLPVWATGIIFSAVYS 346
Query: 241 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN 300
QM SLFV+QGE MD H+G F+IP ASLSIFDT+SVIFWVPIYDR IVPV RKFTGH N
Sbjct: 347 QMGSLFVVQGESMDPHMGR-HFEIPSASLSIFDTISVIFWVPIYDRIIVPVARKFTGHSN 405
Query: 301 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360
G+TQLQRMGIGLFISI +M++A +LE++RL +V+ HNYYD +P+SI +QVPQYF+IGC
Sbjct: 406 GITQLQRMGIGLFISIFAMLSAGILEVVRLGIVKRHNYYDHDRIPLSIFYQVPQYFIIGC 465
Query: 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 420
AEVFTFIGQLEFFYEQAPDAMRS CSALSL TVALGNYLSSLLVTIVT +ST+ G LGWI
Sbjct: 466 AEVFTFIGQLEFFYEQAPDAMRSFCSALSLATVALGNYLSSLLVTIVTDVSTRGGKLGWI 525
Query: 421 PDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
PDNLNRGHLHYFF+LL WYTYKR VG+LR
Sbjct: 526 PDNLNRGHLHYFFFLLAILSVLNLVAFLFVAKWYTYKRAVGTLR 569
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434680|ref|XP_002280463.1| PREDICTED: peptide transporter PTR1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/464 (75%), Positives = 394/464 (84%), Gaps = 19/464 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LTVTASV GLKP C P G C T+ Q+A F+ALYL+ALGTGGIKPCVSSYGAD
Sbjct: 123 MTLLTVTASVPGLKPNC-SPSG--VCDPTETQTAVCFLALYLVALGTGGIKPCVSSYGAD 179
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD DE EK HKSSFFNWFY SIN+GALIA S+LVWIQ+N GWG GFGIPA AMAIAVV
Sbjct: 180 QFDDTDEHEKTHKSSFFNWFYLSINVGALIAGSILVWIQENIGWGVGFGIPAAAMAIAVV 239
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRL+RNQKPGGSPLTR+ QVV AS++K++V++PADKSLLYE AD ES I GSRKL
Sbjct: 240 SFFSGTRLYRNQKPGGSPLTRMSQVVVASLKKYRVQVPADKSLLYEIADGESGIQGSRKL 299
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240
DHTKD SFFDKAAVEIQSD+IK+S +PW++CTVTQVEELKAI+RLLP+WATGIIFSAVYS
Sbjct: 300 DHTKDLSFFDKAAVEIQSDHIKDSPDPWKICTVTQVEELKAIIRLLPVWATGIIFSAVYS 359
Query: 241 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN 300
QM SLFV+QGE MD H+G F+IP ASLSIFDT+SVIFWVPIYDR IVPV RKFTGH N
Sbjct: 360 QMGSLFVVQGESMDPHMGR-HFEIPSASLSIFDTISVIFWVPIYDRIIVPVARKFTGHSN 418
Query: 301 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360
G+TQLQRMGIGLFISI +M++A +LE++RL +V+ HNYYD +P+SI +QVPQYF+IGC
Sbjct: 419 GITQLQRMGIGLFISIFAMLSAGILEVVRLGIVKRHNYYDHDRIPLSIFYQVPQYFIIGC 478
Query: 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 420
AEVFTFIGQLEFFYEQAPDAMRS CSALSL TVALGNYLSSLLVTIVT +ST+ G LGWI
Sbjct: 479 AEVFTFIGQLEFFYEQAPDAMRSFCSALSLATVALGNYLSSLLVTIVTDVSTRGGKLGWI 538
Query: 421 PDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
PDNLNRGHLHYFF+LL WYTYKR VG+LR
Sbjct: 539 PDNLNRGHLHYFFFLLAILSVLNLVAFLFVAKWYTYKRAVGTLR 582
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450790|ref|XP_004143145.1| PREDICTED: peptide transporter PTR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/465 (75%), Positives = 396/465 (85%), Gaps = 21/465 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV GLKP C ++ C T AQSA F+ALYLIALGTGGIKPCVSSYGAD
Sbjct: 111 MTLLTLSASVPGLKPTC---VSKDDCHATTAQSALCFLALYLIALGTGGIKPCVSSYGAD 167
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDDADE EKKHKSSFFNWFY SIN+G LIASSVLVW+Q+N WGWGFGIPA+AMAIAVV
Sbjct: 168 QFDDADETEKKHKSSFFNWFYLSINVGGLIASSVLVWVQENVSWGWGFGIPAIAMAIAVV 227
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRL+RNQKPGGSP TRICQV+ AS RK+KV++P K+L YETAD+ES+I GSRKL
Sbjct: 228 SFFSGTRLYRNQKPGGSPFTRICQVIVASFRKYKVKVPESKAL-YETADSESSIVGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDN-IKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
DHT DF FFDKAAVE++SD +K SV+ W+LCTVTQVEELKAI+RLLP+WATGI F+AVY
Sbjct: 287 DHTDDFRFFDKAAVELESDQMLKGSVDRWKLCTVTQVEELKAIIRLLPVWATGITFAAVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQ+S+LFVLQG+RMD H+G +F+IP ASLSIFDTLSVIFWVP+YDR IVPV RK+TGH
Sbjct: 347 SQISTLFVLQGDRMDPHIG-PNFEIPAASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHS 405
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
NG+TQLQRMGIGLFISIL+M++AA+LEL+RL+ VR HNYY+L MPMSI WQVPQYFLIG
Sbjct: 406 NGITQLQRMGIGLFISILAMLSAAILELVRLQDVRRHNYYELKHMPMSIFWQVPQYFLIG 465
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFYEQAPDAMRSL SALSLTTVALGNYLSSLLVTIV STK G LGW
Sbjct: 466 CAEVFTFIGQLEFFYEQAPDAMRSLGSALSLTTVALGNYLSSLLVTIVNKASTKGGRLGW 525
Query: 420 IPDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
IPDNLN GH+HYFF+LL WY YKRP+G+LR
Sbjct: 526 IPDNLNYGHVHYFFFLLAILSIKNLIAFFVIAKWYKYKRPIGTLR 570
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449496606|ref|XP_004160177.1| PREDICTED: LOW QUALITY PROTEIN: peptide transporter PTR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/465 (75%), Positives = 395/465 (84%), Gaps = 21/465 (4%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV GLKP C ++ C T AQSA F+ALYLIALGTGGIKPCVSSYGAD
Sbjct: 111 MTLLTLSASVPGLKPTC---VSKDDCHATTAQSALCFLALYLIALGTGGIKPCVSSYGAD 167
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDDADE EKKHKSSFFNWFY SIN+G LIASSVLVW+Q+N WGWGFGIPA+AMAIAVV
Sbjct: 168 QFDDADETEKKHKSSFFNWFYLSINVGGLIASSVLVWVQENVSWGWGFGIPAIAMAIAVV 227
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
SFFSGTRL+RNQKPGGSP TRICQV+ AS RK+KV++P K+L YETAD+ES+I GSRKL
Sbjct: 228 SFFSGTRLYRNQKPGGSPFTRICQVIVASFRKYKVKVPESKAL-YETADSESSIVGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDN-IKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
DHT DF FFDKAAVE++SD +K SV+ W+LCTVTQVEELKAI+RLLP+WATGI F+AVY
Sbjct: 287 DHTDDFRFFDKAAVELESDQMLKGSVDRWKLCTVTQVEELKAIIRLLPVWATGITFAAVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQ+S+LFVLQG+RMD H+G +F+IP ASLSIFDTLSVIFWVP+YDR IVPV RK+TGH
Sbjct: 347 SQISTLFVLQGDRMDPHIG-PNFEIPAASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHS 405
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
NG+TQLQRMGIGLFISIL+M++AA+LEL+RL+ VR HNYY+L MPMSI WQVPQYFLIG
Sbjct: 406 NGITQLQRMGIGLFISILAMLSAAILELVRLQDVRRHNYYELKHMPMSIFWQVPQYFLIG 465
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFYEQAPDAMRSL SALSLTTVALGNYLSSLLVTIV STK G LGW
Sbjct: 466 CAEVFTFIGQLEFFYEQAPDAMRSLGSALSLTTVALGNYLSSLLVTIVNKASTKGGRLGW 525
Query: 420 IPDNLNRGHLHYFFWLLT---------------WYTYKRPVGSLR 449
IPDNLN GH+HYFF LL WY YKRP+G+LR
Sbjct: 526 IPDNLNYGHVHYFFXLLAILSIKNLIAFLXIAKWYKYKRPIGTLR 570
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | ||||||
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.973 | 0.766 | 0.692 | 2e-166 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.982 | 0.773 | 0.660 | 1e-164 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.955 | 0.733 | 0.632 | 1.2e-147 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.948 | 0.722 | 0.574 | 6e-135 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.541 | 0.445 | 0.549 | 8.4e-121 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.964 | 0.726 | 0.468 | 3.6e-105 | |
| TAIR|locus:2119058 | 589 | NRT1.8 "NITRATE TRANSPORTER 1. | 0.899 | 0.685 | 0.453 | 7.8e-94 | |
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.928 | 0.679 | 0.448 | 3e-92 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.933 | 0.726 | 0.441 | 3.9e-92 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.959 | 0.730 | 0.412 | 9.3e-91 |
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
Identities = 306/442 (69%), Positives = 365/442 (82%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV GLKP G +TC +Q+A FFVALY+IALGTGGIKPCVSS+GAD
Sbjct: 110 MTLLTLSASVPGLKP---GNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFD+ DE EK KSSFFNWFYFSIN+GALIA++VLVWIQ N GWGWGFG+P VAM IAV
Sbjct: 167 QFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVC 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
FF G+R +R Q+PGGSPLTRI QV+ A+ RK V++P DKSLL+ETAD ESNI GSRKL
Sbjct: 227 FFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKES-VNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
HT + FFDKAAVE QSD+IK+ VNPWRLC+VTQVEELK+I+ LLP+WATGI+F+ VY
Sbjct: 287 VHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQMS++FVLQG MD H+G + F+IP ASLS+FDT+SV+FW P+YD+FI+P+ RKFT ++
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKN-FEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE 405
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
G TQLQRMGIGL +SI +MI A VLE++RL V+ HN YD ++ MSI WQ+PQY LIG
Sbjct: 406 RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIG 465
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFY+QAPDAMRSLCSALSLTTVALGNYLS++LVT+V I+ KNG GW
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGW 525
Query: 420 IPDNLNRGHLHYFFWLLTWYTY 441
IPDNLNRGHL YFF+LL ++
Sbjct: 526 IPDNLNRGHLDYFFYLLATLSF 547
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
Identities = 305/462 (66%), Positives = 362/462 (78%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
MT LT++ASV GL P C G ETC T Q+A F+ALYLIALGTGGIKPCVSS+GAD
Sbjct: 111 MTLLTISASVPGLTPTCSG----ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGAD 166
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFDD DE EK+ KSSFFNWFYF IN+GA+IASSVLVWIQ N GWGWG G+P VAMAIAVV
Sbjct: 167 QFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVV 226
Query: 121 SFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180
FF+G+ +R QKPGGSPLTR+ QV+ AS RK KV++P D+SLLYE DAES+I GSRKL
Sbjct: 227 FFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKL 286
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNP-WRLCTVTQVEELKAIVRLLPIWATGIIFSAVY 239
+HTK +FFDKAAVE +SDN + + W+LCTVTQVEELKA++RLLPIWATGI+F++VY
Sbjct: 287 EHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVY 346
Query: 240 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK 299
SQM ++FVLQG +D H+G +FKIP ASLS+FDTLSV+FW P+YD+ IVP RK+TGH+
Sbjct: 347 SQMGTVFVLQGNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE 405
Query: 300 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIG 359
G TQLQR+GIGL ISI SM++A +LE+ RL V+ HN Y+ +PM+I WQVPQYFL+G
Sbjct: 406 RGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVG 465
Query: 360 CAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419
CAEVFTFIGQLEFFY+QAPDAMRSLCSALSLT +A GNYLS+ LVT+VT ++ G GW
Sbjct: 466 CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGW 525
Query: 420 IPDNLNRGHLHYFFWLLT---------------WYTYKRPVG 446
I NLN GHL YFFWLL WYTYK+ G
Sbjct: 526 IAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTG 567
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 279/441 (63%), Positives = 339/441 (76%)
Query: 1 MTFLTVTASVSGLKPV-CHGPRGEETC-QVTDAQSATFFVALYLIALGTGGIKPCVSSYG 58
M+ LT++ASV LKP C G + C T AQ A FF LYLIALGTGGIKPCVSS+G
Sbjct: 127 MSALTLSASVPALKPAECIG----DFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFG 182
Query: 59 ADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA 118
ADQFDD D E+ K+SFFNWFYFSINIGAL++SS+LVWIQ+N GWG GFGIP V M +A
Sbjct: 183 ADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLA 242
Query: 119 VVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSR 178
+ SFF GT L+R QKPGGSP+TRI QVV AS RK V++P D +LLYET D S I GSR
Sbjct: 243 IASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSR 302
Query: 179 KLDHTKDFSFFDKAAVEIQSDNIKES--VNPWRLCTVTQVEELKAIVRLLPIWATGIIFS 236
K++HT D + DKAAV I + K N WRLCTVTQVEELK ++R+ PIWA+GIIFS
Sbjct: 303 KIEHTDDCQYLDKAAV-ISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFS 361
Query: 237 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFT 296
AVY+QMS++FV QG M+ +G SF++PPA+L FDT SVI WVP+YDRFIVP+ RKFT
Sbjct: 362 AVYAQMSTMFVQQGRAMNCKIG--SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFT 419
Query: 297 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL-PEMPMSIMWQVPQY 355
G G T++QRMGIGLF+S+L M AAA++E+IRL M + + +P+S++WQ+PQY
Sbjct: 420 GVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQY 479
Query: 356 FLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNG 415
F++G AEVF FIGQLEFFY+Q+PDAMRSLCSAL+L T ALGNYLSSL++T+VT +T+NG
Sbjct: 480 FILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNG 539
Query: 416 NLGWIPDNLNRGHLHYFFWLL 436
GWI DNLN GHL YFFWLL
Sbjct: 540 QEGWISDNLNSGHLDYFFWLL 560
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| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
Identities = 252/439 (57%), Positives = 326/439 (74%)
Query: 1 MTFLTVTASVSGLKPV-CHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGA 59
M LT++AS+ LKP C G T Q A FF LYLIALGTGGIKPCVSS+GA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197
Query: 60 DQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAV 119
DQFDD D E+ K+SFFNWFYFSINIG+ I+S++LVW+Q+N GWG GF IP V M +++
Sbjct: 198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257
Query: 120 VSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRK 179
SFF GT L+R QKPGGSP+TR+CQV+ A+ RK K+ LP D S LYET + S I GSRK
Sbjct: 258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRK 317
Query: 180 LDHTKDFSFFDKAAV--EIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSA 237
+ HT + F DKAAV E +S + S NPW+LCTVTQVEE+K ++R+ PIWA+GI++S
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 238 VYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTG 297
+YSQ+S+LFV QG M+ + SF+IPPAS +FDTL V+ +PIYDRF+VP R+FTG
Sbjct: 377 LYSQISTLFVQQGRSMNRII--RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 298 HKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357
GLT LQRMGIGLF+S+LS+ AAA++E +RL++ ++ + MSI WQ+PQY L
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF-------VAMSIFWQIPQYIL 487
Query: 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNL 417
+G AEVF FIG++EFFY+++PDAMRS+CSAL+L A+G+YLSSL++T+V + G
Sbjct: 488 MGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKD 547
Query: 418 GWIPDNLNRGHLHYFFWLL 436
GW+PD+LN+GHL YFFWLL
Sbjct: 548 GWVPDDLNKGHLDYFFWLL 566
|
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| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 139/253 (54%), Positives = 193/253 (76%)
Query: 189 FDKAAVEIQSDNIKE---SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSL 245
+ K+ +++ D+ E + NPW+LCTVTQVEE+K ++RL+PIWA+GIIFS ++SQ+ +L
Sbjct: 275 YRKSNLKVPEDSTDEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTL 334
Query: 246 FVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQL 305
FV QG M +G F+IPPA+L +FDT SV+ VPIYDR IVP+ R+FTG G T+L
Sbjct: 335 FVQQGRCMKRTIG--LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTEL 392
Query: 306 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM-PMSIMWQVPQYFLIGCAEVF 364
QRMGIGLF+S+LS+ AA++E +RL++ R+ + + ++ P++I WQ+PQYFL+G A VF
Sbjct: 393 QRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVF 452
Query: 365 TFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIP-DN 423
F+G++EFFYEQ+PD+MRSLCSA +L T LGNYLSSL++T+V +S K+ WIP DN
Sbjct: 453 FFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKDC---WIPSDN 509
Query: 424 LNRGHLHYFFWLL 436
+N GHL YFFWLL
Sbjct: 510 INNGHLDYFFWLL 522
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 208/444 (46%), Positives = 294/444 (66%)
Query: 1 MTFLTVTASVSGLKPV-CHGPRGEETCQVTD-AQSATFFVALYLIALGTGGIKPCVSSYG 58
MT LT++A + L+P C +GEE C V D AQ + +VAL L ALG+GGI+PCV ++G
Sbjct: 109 MTLLTISAIIPTLRPPPC---KGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFG 165
Query: 59 ADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA 118
ADQFD++D + ++FNW+YF + L+A +VLVWIQDN GWG G GIP VAM ++
Sbjct: 166 ADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLS 225
Query: 119 VVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSR 178
V++F G +L+R+ P GSP TR+ QV A+ RK K+ + +D SLLY + ++ I+
Sbjct: 226 VIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGG 285
Query: 179 KLDHTKDFSFFDKAAVEIQSDNIK--ESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFS 236
KL HTK SF DKAA+ + DN+K + N WRL TV +VEELK+++R+ PI A+GI+
Sbjct: 286 KLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLI 345
Query: 237 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFT 296
Y+Q + + Q + M+ H+ NS F+IP S+S+F T++++ + YDR V V RKFT
Sbjct: 346 TAYAQQGTFSLQQAKTMNRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFT 404
Query: 297 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE--MPMSIMWQVPQ 354
G + G+T L RMGIG ISI++ + A +E+ R + EH D P +P+S +W +PQ
Sbjct: 405 GLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQ 464
Query: 355 YFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKN 414
Y L G AE F IG LEFFY+QAP++MRS +AL +++GNY+S+LLVT+V S K
Sbjct: 465 YGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKP 524
Query: 415 GNLGWIPDN-LNRGHLHYFFWLLT 437
W+PDN LNRG L YF+WL+T
Sbjct: 525 DGSNWLPDNNLNRGRLEYFYWLIT 548
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| TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 189/417 (45%), Positives = 280/417 (67%)
Query: 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIA 91
++ F++++YLIALG GG +P ++++GADQFD D E K +FF++FY ++N+G+L +
Sbjct: 145 KTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFYLALNLGSLFS 204
Query: 92 SSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIR 151
++VL + +D W GF A + +V F GT +R+ P SP +R CQV+ A+ R
Sbjct: 205 NTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSRFCQVLVAATR 264
Query: 152 KHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIK--ES---VN 206
K K+++ ++ LY D+E+ TG +K+ HTK F F D+AA+ D + ES +
Sbjct: 265 KAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKVESGSKYD 321
Query: 207 PWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266
PWRLC+VTQVEE+K ++RLLPIW I++S V++QM+SLFV+QG M T++ N F+IP
Sbjct: 322 PWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNIKN--FRIPA 379
Query: 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKF--TGHKNGLTQLQRMGIGLFISILSMIAAAV 324
+S+S FD LSV F++ Y RF+ P+ + T GLT+LQRMGIGL I+I++MI+A +
Sbjct: 380 SSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAMISAGI 439
Query: 325 LELIRLRMVREHNYYDLPEMP-MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRS 383
+E+ RL+ + + +SI WQVPQY LIG +EVF ++GQLEFF QAP ++S
Sbjct: 440 VEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAPTGLKS 499
Query: 384 LCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYT 440
SAL + +++LGNY+SSLLV+IV IST + GWIP+NLN+GHL F++LL T
Sbjct: 500 FASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAGLT 556
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| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 195/435 (44%), Positives = 283/435 (65%)
Query: 20 PRG---EET-CQVTDAQSAT-FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS 74
PRG E T C T F+ ++YLIALG GG +P +++ GADQFD+ E K
Sbjct: 137 PRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKI 196
Query: 75 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKP 134
+FF++FY ++N+G+L ++++L + +D W GF + I ++ F GT +R KP
Sbjct: 197 AFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKP 256
Query: 135 GGSPLTRICQVVAASIRKHKVELPA-DKSLLYETADAE---SNITGSRKLDHTKDFSFFD 190
G+PL+R CQV+ A+ +K VE P + +Y+ D+E +++ R++ HT +F F D
Sbjct: 257 TGNPLSRFCQVLVAATKKSSVEAPLRGREEMYD-GDSEGKNASVNTGRRIVHTDEFKFLD 315
Query: 191 KAA-VEIQS--DNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFV 247
KAA + + D ++SVNPWRLC VTQVEE+K I+RL+PIW II+S V++QM+SLFV
Sbjct: 316 KAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFV 375
Query: 248 LQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKF--TGHKNGLTQL 305
QG M+T V S FKIPPAS+S FD LSV ++ +Y R + PV +F G K G+T+L
Sbjct: 376 EQGAAMNTSV--SDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSK-GITEL 432
Query: 306 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFT 365
RMGIGL I++++MIAA ++E RL+ + + +SI WQ PQY LIG +EVF
Sbjct: 433 HRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFM 492
Query: 366 FIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLN 425
++GQLEFF Q PD ++S SAL + ++++GN++SSLLVT+V IST++ GWIP NLN
Sbjct: 493 YVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLN 552
Query: 426 RGHLHYFFWLLTWYT 440
+GHL F++LL T
Sbjct: 553 KGHLDRFYFLLAALT 567
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| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 194/439 (44%), Positives = 278/439 (63%)
Query: 4 LTVTASVSGLKP-VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQF 62
L V + L+P CH GE T Q +V+LYLIALGTGG+K +S +G+DQF
Sbjct: 113 LAVATKLPELRPPTCH--HGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQF 170
Query: 63 DDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF 122
DD D EK H + FFN F+F I++G L+A +VLV++QD G W +GI V+MAIA+V F
Sbjct: 171 DDKDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIF 230
Query: 123 FSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDH 182
GT+ +R +K GSP+ +I QV+AA+ RK K+ELP LYE N G R ++H
Sbjct: 231 LCGTKRYRYKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYE-----DNPEGIR-IEH 284
Query: 183 TKDFSFFDKAAVEIQSD--NIKESV---NPWRLCTVTQVEELKAIVRLLPIWATGIIFSA 237
T F DKAA+ + D + V NPW+L +VT+VEE+K +VRLLPIWAT IIF
Sbjct: 285 TDQFHLLDKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWT 344
Query: 238 VYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTG 297
Y+QM + V Q M ++G SFKIP SL++F +++ + +YDR I+P +K+ G
Sbjct: 345 TYAQMITFSVEQASTMRRNIG--SFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKG 402
Query: 298 HKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357
K G + LQR+ IGL +S M AAA++E RL + + + LP +S+ VPQ+FL
Sbjct: 403 -KPGFSSLQRIAIGLVLSTAGMAAAALVEQKRLSVAKSSSQKTLP---ISVFLLVPQFFL 458
Query: 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNL 417
+G E F + GQL+FF Q+P M+++ + L LTT++LG ++SS LV+IV +++ + ++
Sbjct: 459 VGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDV 518
Query: 418 GWIPDNLNRGHLHYFFWLL 436
GW+ DN+N G L YF+WLL
Sbjct: 519 GWLADNINHGRLDYFYWLL 537
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| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 182/441 (41%), Positives = 278/441 (63%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETC-QVTDAQSATFFVALYLIALGTGGIKPCVSSYGA 59
++ LT++ + GL+P P C Q + Q ++ALYL ALGTGG+K VS +G+
Sbjct: 113 VSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGS 172
Query: 60 DQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAV 119
DQFD+ + E+ + FFN F+F IN+G+L+A +VLV++QD+ G WG+GI A A+ +A+
Sbjct: 173 DQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLAL 232
Query: 120 VSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETAD---AESNITG 176
F +GT +R +K GSP+T++ V+ A+ R K+ELPAD S LY+ D AE ++ G
Sbjct: 233 SVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKG 292
Query: 177 SRKLDHTKDFSFFDKAAVEIQSDNIKESV-NPWRLCTVTQVEELKAIVRLLPIWATGIIF 235
+KL HT+ F DKAA+ Q + +V N W L T+T VEE+K IVR+LPIWAT I+F
Sbjct: 293 KQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILF 352
Query: 236 SAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKF 295
V++Q+++L V Q E +D +G SF+IPPAS+++F ++ +YDR + + +K
Sbjct: 353 WTVHAQLTTLSVAQSETLDRSIG--SFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKL 410
Query: 296 TGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQY 355
+ +GL LQR+G+GLF ++M AA++EL RLR H + +P+ +PQY
Sbjct: 411 FNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGP-TVKTLPLGFYLLIPQY 469
Query: 356 FLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNG 415
++G E + GQL+FF + P M+ + + L L+T+ALG + SS+LVTIV + K
Sbjct: 470 LIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAH 529
Query: 416 NLGWIPDNLNRGHLHYFFWLL 436
WI D+LN+G L+ F+WL+
Sbjct: 530 P--WIADDLNKGRLYNFYWLV 548
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M390 | PTR1_ARATH | No assigned EC number | 0.6753 | 0.9844 | 0.7754 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_I001673 | hypothetical protein (570 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 449 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-98 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-33 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-27 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 6e-16 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-06 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 3e-05 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 299 bits (769), Expect = 1e-98
Identities = 138/396 (34%), Positives = 203/396 (51%), Gaps = 41/396 (10%)
Query: 1 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 60
LT+ A L PV Q A F++ LYLIALGTGGIKP VS++GAD
Sbjct: 15 HVLLTLGAIPPSLSPV---------------QVALFYIGLYLIALGTGGIKPNVSAFGAD 59
Query: 61 QFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 120
QFD E + + FF+WFYFSIN G+LIA+ + ++Q N G+ GFG+PAV M +A++
Sbjct: 60 QFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALL 116
Query: 121 SFFSGTRLFRNQ-KPGGSPLTR-ICQVVAASIRKHKVELPADKSLLYETADAESNITGSR 178
F G+R ++ + PGGSP T I ++ A+ + K++LP D LY + + + S+
Sbjct: 117 VFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQ 176
Query: 179 KLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAV 238
HT + I V L+AI+ +LPIWA I+ +
Sbjct: 177 TKVHT-RVAVIF----------IPLPKFWALFDQQGSVWLLQAILLMLPIWAFWILPDQM 225
Query: 239 YSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGH 298
++Q+++L V Q MD + F+IPPAS F+ L+V+ +PI D + P+ R
Sbjct: 226 WTQLATLIVRQVPTMDRIIY-PLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----L 280
Query: 299 KNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM-PMSIMWQVPQYFL 357
K GLT QR G+G+FI I++ AA++E R R P+ I+W +P+ F+
Sbjct: 281 KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFI 340
Query: 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV 393
G G LEF + P +M SL + LS
Sbjct: 341 SGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-33
Identities = 81/367 (22%), Positives = 139/367 (37%), Gaps = 40/367 (10%)
Query: 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL 95
++ L LI +GTG KP +SS + + + + F FY INIG+LIA +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 96 VWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKV 155
+ N GW GFG+ AV M I +V F G R + GG P + + +
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR--HVKGIGGVP-------DPNPLSFNFL 226
Query: 156 ELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVN-PWRLCTVT 214
++ A + + ++ + I I +
Sbjct: 227 LPVLGGLVVMILAALLTLL-------LNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-- 277
Query: 215 QVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDT 274
+E + ++ +P++ +IF A+Y QM S L +R F++PPA +
Sbjct: 278 --DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR-QIFGFEVPPAWFQSLNP 334
Query: 275 LSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVR 334
+I + PI + R + + +GL ++ L + + +
Sbjct: 335 FFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLILAGLGFLILLLAGI------- 383
Query: 335 EHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394
++ P +S+ W V Y L E+F L + AP A++S A+ TVA
Sbjct: 384 ---WFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440
Query: 395 LGNYLSS 401
G L
Sbjct: 441 AGQTLGG 447
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 66/346 (19%)
Query: 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS 92
A V L LIALGTGGIKPCVS++G DQF+ E + + FF++FYF+IN G+L ++
Sbjct: 85 DALSLVGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRFRFFSFFYFAINAGSLFST 141
Query: 93 SV-------LVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQV 145
+ + + + FG+P + M +A++ F G+++++ + P G+ ++++ +
Sbjct: 142 IITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKC 201
Query: 146 VAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESV 205
+ +++K + + + D AA + I+
Sbjct: 202 IVFALKK----------------------RFRTRSEDWPRLHWLDWAAPKYLIRMIR--- 236
Query: 206 NPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIP 265
K ++R+L ++ +F A++ Q S + LQ RMD VG F I
Sbjct: 237 ------------STKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVG--LFPIQ 282
Query: 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVL 325
P + + L V+ VPI+D + P K T L++M +G+ ++ L+ AA+L
Sbjct: 283 PDQMQAVNPLLVLILVPIFDYVVYPALAKC---GTRFTSLRKMAVGMLLAALAFAVAALL 339
Query: 326 ELIRLRMVREHNYYDLPEMPMS--IMWQVPQYFLIGCAE-VFTFIG 368
+ LPE P + I QV C V + I
Sbjct: 340 QNKINPT--------LPEEPSASIIFLQV---LNTDCTITVVSGIS 374
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 6e-16
Identities = 74/374 (19%), Positives = 129/374 (34%), Gaps = 38/374 (10%)
Query: 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS 92
F L IA+G+G K SS ++ D + F FY SINIG+ I+
Sbjct: 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRR---DGGFTLFYMSINIGSFISP 158
Query: 93 SVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRK 152
+ I +N G+ GF + AV M I +++FF+G + R+ PL+ + K
Sbjct: 159 LLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG----K 214
Query: 153 HKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCT 212
+ L A +L++ A ++ + L T +
Sbjct: 215 LLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLA---FKP---------R 262
Query: 213 VTQVEELKAIVRLLPIWATGIIFSAVYSQM-SSLFVLQGERMDTHVGNSSFKIPPASLSI 271
+ V K + ++ ++F +Y+QM +SL M + +P
Sbjct: 263 LDAVARNKMYA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQS 319
Query: 272 FDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLR 331
+ V+ P+ + RK K+ T L+ LF + AA +
Sbjct: 320 LNPFWVVVGSPVLAMIWTRLGRK---GKDPTTPLKFTLGMLFCGASFLTFAASIWFAD-- 374
Query: 332 MVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLT 391
S + V Y E+ L ++ + AP + +
Sbjct: 375 ----------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFL 424
Query: 392 TVALGNYLSSLLVT 405
A+G+ L L T
Sbjct: 425 AQAMGSLLGGYLAT 438
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 340 DLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYL 399
D+P +SI+WQ+PQY L EV + LEF Y QAP M+S+ AL L TVA+GN
Sbjct: 544 DVPVNTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN-- 601
Query: 400 SSLLVTIV 407
++V I+
Sbjct: 602 --IIVLII 607
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASS 93
V +L+ LG G + P ++ A+ F K + F +GAL+
Sbjct: 88 WLLLVGRFLLGLGGGALYPAAAALIAEWF------PPKERGRALGLFSAGFGLGALLGPL 141
Query: 94 VLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLF 129
+ + ++ GW W F I A+ + + RL
Sbjct: 142 LGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLL 177
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV 96
++ + IA+G G K SS + ++ D F +Y SINIG+ +
Sbjct: 116 YMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATP 171
Query: 97 WIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ--KPGGSPL 139
W+ GW F + V M I VV+F R + KP P+
Sbjct: 172 WLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPI 216
|
Length = 500 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL 95
+++L +I G G K VS + ++ D + F+ Y + N+G++IA
Sbjct: 103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIAC 158
Query: 96 VWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 133
+ Q+ W GFG+ AV M +V F G R F + +
Sbjct: 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.97 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.97 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.96 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.8 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.76 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.69 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.69 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.67 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.67 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.62 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.6 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.58 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.58 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.58 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.58 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.56 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.55 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.54 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.54 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.53 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.53 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.5 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.5 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.5 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.48 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.47 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.47 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.46 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.45 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.44 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.42 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.41 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.38 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.38 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.36 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.36 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.36 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.34 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.34 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.34 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.34 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.33 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.32 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.31 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.3 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.3 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.3 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.29 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.29 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.28 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.28 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.27 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.27 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.27 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.23 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.23 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.22 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.21 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.21 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.18 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.16 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.16 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.14 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.12 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.1 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.08 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.07 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.06 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.06 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.04 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.03 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.99 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.98 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.93 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.9 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.71 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.52 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.51 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.49 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.48 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.47 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.46 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.42 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.38 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.36 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.26 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.22 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.21 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.19 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.18 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.15 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.07 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.07 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.06 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.02 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.0 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.99 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 97.99 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 97.98 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 97.98 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 97.98 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.94 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.93 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.92 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.91 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 97.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 97.9 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.87 | |
| PRK10504 | 471 | putative transporter; Provisional | 97.87 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 97.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.86 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.86 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 97.83 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.83 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.81 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.8 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 97.8 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.78 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 97.77 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 97.76 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.74 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 97.73 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.71 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.69 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.69 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 97.68 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.67 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 97.65 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.65 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 97.64 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.61 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.6 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 97.58 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.58 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 97.55 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.55 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 97.54 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 97.52 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.52 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.51 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.51 | |
| PRK03699 | 394 | putative transporter; Provisional | 97.49 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.48 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.43 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.42 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 97.42 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.4 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.39 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.36 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.33 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.3 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.29 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.27 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 97.26 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.25 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.23 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.21 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.2 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.2 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.19 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.17 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.16 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.12 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.11 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.1 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.1 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.08 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 96.98 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 96.96 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.91 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.86 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.84 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.83 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 96.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 96.78 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.78 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.72 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 96.72 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 96.65 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 96.57 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.49 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 96.42 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.41 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 96.39 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 96.34 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.09 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.08 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.03 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.01 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 95.88 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 95.84 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 95.78 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 95.77 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 95.66 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 95.54 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 95.38 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 95.24 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 95.23 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 95.11 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 95.11 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 94.99 | |
| PRK11462 | 460 | putative transporter; Provisional | 94.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 94.31 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.3 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.15 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 93.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 93.78 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 93.3 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 92.54 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 92.1 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 91.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 91.44 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 89.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 89.8 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 89.8 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 89.63 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 89.18 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 88.52 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.44 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 87.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 87.44 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 87.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 86.08 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 85.74 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 84.64 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 83.23 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 81.77 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=391.64 Aligned_cols=421 Identities=53% Similarity=0.904 Sum_probs=366.0
Q ss_pred EEeecccCCCCCC-CCCCCCCcccc-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH
Q 013109 4 LTVTASVSGLKPV-CHGPRGEETCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY 81 (449)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y 81 (449)
+|.++.+..++|. |--+...+.|. ++......|+.++.++++|.|+.+|+..++.+||++++++.+++.+.+.|+|+|
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y 200 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY 200 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence 4667777777774 42333455788 888899999999999999999999999999999999777667777889999999
Q ss_pred HHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCc
Q 013109 82 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADK 161 (449)
Q Consensus 82 ~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~ 161 (449)
+..|+|..++-.+..|+.++.+|.+.|.++.+.+++++++|+.+.+.|+.++|.++|...+.+|+.++.++++...+.+.
T Consensus 201 f~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~ 280 (571)
T KOG1237|consen 201 FSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDP 280 (571)
T ss_pred HHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999988876553
Q ss_pred cchhhcccccccccCCcccCCCCccchhhhhhhhhccccccc-cCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhh
Q 013109 162 SLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKE-SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240 (449)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~ 240 (449)
..+ +. .....+...+.+.++++|++++......... ..++|++|+.++|||.|..+|.+|+|+..+.+|.++.
T Consensus 281 ~~~-~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~a 354 (571)
T KOG1237|consen 281 EEL-YY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYA 354 (571)
T ss_pred hhc-cc-----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 322 10 1111222344667889999887543321001 2467999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhccCCCCCC-ceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHH
Q 013109 241 QMSSLFVLQGERMDTHVGNSS-FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSM 319 (449)
Q Consensus 241 q~~~~~~~~~~~~~~~~g~~g-~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~ 319 (449)
|+.+.+..|+..||++.+ + +++|++++..+..+.++++.|+.++++.|+.+|+.++++.+++..|+.+|+.+..++|
T Consensus 355 q~~t~~v~Q~~~mdr~~~--~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm 432 (571)
T KOG1237|consen 355 QMVTFFVLQATTMDRHLG--SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSM 432 (571)
T ss_pred hhhhheehhhhhcCCCCC--CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHH
Confidence 999999999999999988 6 9999999999999999999999999999999999887656899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHH
Q 013109 320 IAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYL 399 (449)
Q Consensus 320 l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~l 399 (449)
...+.+|..|++.+.+ .....+++|++|+++||+++|+||++.+++++|+.|+++|++||+.++++|.+..++|+.+
T Consensus 433 ~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~l 509 (571)
T KOG1237|consen 433 AVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYL 509 (571)
T ss_pred HHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887765 1223467999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhhhcccccCCCcCCCC-CCCCCcchhhhhhhhh
Q 013109 400 SSLLVTIVTSISTKNGNLGWIP-DNLNRGHLHYFFWLLT 437 (449)
Q Consensus 400 g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 437 (449)
+.+++.++...+.+ ..+|++ +++|.+++++|||+++
T Consensus 510 ss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla 546 (571)
T KOG1237|consen 510 SSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLA 546 (571)
T ss_pred HHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHH
Confidence 99999999877654 448999 9999999999999987
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=297.93 Aligned_cols=327 Identities=25% Similarity=0.385 Sum_probs=251.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+...++++++++++|.|++|||.+++++|+||++|+ ||+..|+++|+++|+|++++|.+.+++.+++||+..|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3567899999999999999999999999999999996 599999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccC--CCCCc------hhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCC
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQK--PGGSP------LTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDH 182 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~--~~~~~------~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 182 (449)
+++.+.++++.++++++++.... ++.++ +..+..++....+-. ++.. .+
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-------------l~ 247 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LTLL-------------LN 247 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HHHH-------------HH
Confidence 99999999999999988776532 11111 111222221111100 0000 00
Q ss_pred CCccchhhhhhhhhccc-cccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHh-hhccCCCCC
Q 013109 183 TKDFSFFDKAAVEIQSD-NIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNS 260 (449)
Q Consensus 183 ~~~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~-~~~~~~g~~ 260 (449)
.+..++......+.... ... ....+ ++.. +|+|+.++++++++..++||++++|+++++..++. ..|++..
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~-~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-- 320 (498)
T COG3104 248 QNTFSGVLLVISILIAIIYFA-EAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-- 320 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence 00011111000000000 000 00011 2223 67888999999999999999999999999887774 4455534
Q ss_pred CceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 013109 261 SFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYD 340 (449)
Q Consensus 261 g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~ 340 (449)
|+++|+++++++|++.++++.|+.+.+++|+.++. +++++..|+++|+.+++.+++.+....... .
T Consensus 321 g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~----------~ 386 (498)
T COG3104 321 GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGIWF----------G 386 (498)
T ss_pred ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHhh----------c
Confidence 79999999999999999999999999988877664 248999999999999999999888764431 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013109 341 LPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 341 ~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.++...|+||+++.|+++++||.+++|.+++.+++.+|+++++.++|.|.+..+.|+.++..+.+
T Consensus 387 ~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 387 GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 12456999999999999999999999999999999999999999999999999999999988766
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=263.10 Aligned_cols=332 Identities=16% Similarity=0.175 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHH
Q 013109 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV 113 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~ 113 (449)
..+++++.++++|.|.++|+..++++|+||+++ ++|+++++++|+..|+|+.++|.++|++.+++|||+.|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~----~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCC----ccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 346678888899999999999999999999875 2489999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhccccccccC---CCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh-
Q 013109 114 AMAIAVVSFFSGTRLFRNQK---PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF- 189 (449)
Q Consensus 114 ~~~l~~i~~~~~~~~~~~~~---~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l- 189 (449)
.++++++.++..++.+.+.. ++..+.......+...........+ .+... .+.. +....+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~-~~~~~~~ 240 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP----ALITV-----------LFWK-EWSVYAL 240 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH----HHHHH-----------HHHH-HHHHHHH
Confidence 88888888877766654321 1111101110000000000000000 00000 0000 000000
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHH-hhhccCCCCCCceeCccc
Q 013109 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQG-ERMDTHVGNSSFKIPPAS 268 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~-~~~~~~~g~~g~~i~~~~ 268 (449)
................ .. ..-+|+|++..++++++..++||+.++|.++.+.+.+ +++|++++ |+++|++|
T Consensus 241 ~~~~~~~~~~~~~~~~-----~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~--g~~ip~~~ 312 (493)
T PRK15462 241 IVATIIGLGVLAKIYR-----KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF--GYTVPTAM 312 (493)
T ss_pred HHHHHHHHHHHHHHHH-----hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc--ceeeCHHH
Confidence 0000000000000000 01 1225677888999999999999999999999865554 67888888 99999999
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
++++|+++++++.|+.+.++.++. +++++++...|+++|++++++|++.+.+.... . ++...+|.
T Consensus 313 ~qslNp~~ii~l~P~~a~lw~~l~----~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~-------~~~~~~s~ 377 (493)
T PRK15462 313 FQSINAFAVMLCGVFLAWVVKESV----AGNRTVRIWGKFALGLGLMSAGFCILTLSARW----S-------AMYGHSSL 377 (493)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHh----cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c-------CCCCCcCH
Confidence 999999999999999998654432 22234889999999999999999988765422 0 11224899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHH-HHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV-ALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~-~lG~~lg~~l~~~~~ 408 (449)
+|++..++++++||.+.+|.+++.+.+.+|++.+|++||+|++.. .+|+.+++.+.+...
T Consensus 378 ~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 378 PLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999954 799999988888664
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=264.64 Aligned_cols=330 Identities=17% Similarity=0.258 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHH
Q 013109 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV 113 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~ 113 (449)
..++++++++++|.|+++|+..++++|+||+++ ++|+++++++|+++|+|+++||.++|++.+++|||++|+++.+
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~----~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKD----PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 346789999999999999999999999998876 2468899999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhccccccccC--CCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccch-hh
Q 013109 114 AMAIAVVSFFSGTRLFRNQK--PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSF-FD 190 (449)
Q Consensus 114 ~~~l~~i~~~~~~~~~~~~~--~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-l~ 190 (449)
.++++++.+...++.+++.+ |++++ .|..+.+........+..... +.. ++.....+ +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~ 243 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCA----WLM-------------HNVEVANLVLI 243 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHH----HHH-------------hhhhHHHHHHH
Confidence 77777777766665554432 22222 233222211110000000000 000 00000000 00
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHh-hhccCCCCCCceeCcccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNSSFKIPPASL 269 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~-~~~~~~g~~g~~i~~~~l 269 (449)
.........+ .++..+.+.++ +++.+..+.+++..+++|+++.|..+.+..+.. .++++.. |+.++++++
T Consensus 244 ~~~~i~~~~f------~~~~~~~~~~~-r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G~~i~~~~~ 314 (489)
T PRK10207 244 VLSIVVTIIF------FREAFKLDKTG-RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--GFSINPVSF 314 (489)
T ss_pred HHHHHHHHHH------HHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--ceEECHHHH
Confidence 0000000000 00001112233 344556777788899999999999887766664 4666655 899999999
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013109 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
+++|++.++++.|+.+++. +|+.+|+.++++..|+++|++++++|++.+...+... . +.+..+|+|
T Consensus 315 ~~~n~~~iii~~pl~~~l~----~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~-------~~~~~~s~~ 380 (489)
T PRK10207 315 QALNPFWVVVASPILAGIY----THLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---A-------DAQGLTSPW 380 (489)
T ss_pred HhHhHHHHHHHHHHHHHHH----HHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---c-------CCCCccCHH
Confidence 9999999999999988754 3443333348999999999999999988765433210 0 001237889
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++.++++|+||++.+|++++.+++.+|++++|.++|+|++.+++|+.+|..+.+.+.
T Consensus 381 ~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 381 FIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999887653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=265.84 Aligned_cols=338 Identities=39% Similarity=0.672 Sum_probs=228.7
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhh
Q 013109 29 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGF 108 (449)
Q Consensus 29 ~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF 108 (449)
++.+.+.++++|+++++|.|++|||..++++|||+++++ ++|+++|+++|+++|+|+++++.+.+++.+++||++.|
T Consensus 29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f 105 (372)
T PF00854_consen 29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGF 105 (372)
T ss_dssp -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhh
Confidence 346778999999999999999999999999999997742 35899999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcccccccc-CCCCCchhH-HHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCcc
Q 013109 109 GIPAVAMAIAVVSFFSGTRLFRNQ-KPGGSPLTR-ICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDF 186 (449)
Q Consensus 109 ~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~-~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 186 (449)
+++.+.++++++.++.++++++++ ++.+.+..+ ...++..+.+++....+.....+.+..+.. . .+ .....
T Consensus 106 ~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~ 178 (372)
T PF00854_consen 106 GIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQY-S---ER---SIFGI 178 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHHH-C---CC---CCCCC
T ss_pred hHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhhh-h---hh---hhhhh
Confidence 999999999999999999988876 566666666 455556666666555531111111110000 0 00 00001
Q ss_pred chhhhhhhhhccccccccCCCCc-cccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCC-cee
Q 013109 187 SFFDKAAVEIQSDNIKESVNPWR-LCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSS-FKI 264 (449)
Q Consensus 187 ~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g-~~i 264 (449)
.+...+........ ..+. .++++.+++.|...+.++.+...+.++..+.+..+....|..++|+.++ + +++
T Consensus 179 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i 251 (372)
T PF00854_consen 179 IVFIRAAVIFFPEI-----FFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG--GLFGI 251 (372)
T ss_dssp CCHHHHHHHHCCCH-----HHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------
T ss_pred hhhccchhhhhhhh-----hhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc--ccccc
Confidence 11111111111100 0010 1345667788888888999988899999988888888888888887777 8 899
Q ss_pred CcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 013109 265 PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM 344 (449)
Q Consensus 265 ~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~ 344 (449)
|+++++++|++.++++.|+.+++++|+.++ . +++++..|+.+|++++.+++.....++..|....+.+ .
T Consensus 252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~---~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~-------~ 320 (372)
T PF00854_consen 252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-G---IQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC-------G 320 (372)
T ss_dssp -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH-----------T
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-c---ccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-------C
Confidence 999999999999999999999999998872 2 2389999999999999999999888877544333222 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHH
Q 013109 345 PMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394 (449)
Q Consensus 345 ~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~ 394 (449)
..+.+|+++.+++.+++|.+..+.+.+.+++.+|++..+.++|+|+....
T Consensus 321 ~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 321 KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 35558888999999999999999999977777777777777777666543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=252.29 Aligned_cols=327 Identities=20% Similarity=0.262 Sum_probs=233.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++++++.|+|.|+++|+..++++|++|++++ ++|+++++++|+..|+|.++||.++|++.+++||++.|+++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 456788899999999999999999999999987642 13888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCch----hHH-H--H----HHHHHHHhccCcCCCCccchhhcccccccccCCccc
Q 013109 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPL----TRI-C--Q----VVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~----~~~-~--~----vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l 180 (449)
++.++++++.+...++.+++.++++++. .+. . . .+....+....... .
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------- 236 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH-V-------------------- 236 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-c--------------------
Confidence 8777777777766666554332221111 010 0 0 00111110000000 0
Q ss_pred CCCCccchh-hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHH-HHHhhhccCCC
Q 013109 181 DHTKDFSFF-DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFV-LQGERMDTHVG 258 (449)
Q Consensus 181 ~~~~~~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~-~~~~~~~~~~g 258 (449)
...+..... ..+........ ...+ +.+.++ .++..+++++++..+++|+++.|..+.+. .+.+++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~-~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~ 308 (475)
T TIGR00924 237 VIANILLMTVTLAVIIFFFRL---AFKP----RLDAVA-RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhc----cCCHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 000000000 00111100000 0000 112223 33455688899999999999999999765 44566788777
Q ss_pred CCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013109 259 NSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNY 338 (449)
Q Consensus 259 ~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~ 338 (449)
++++|+++++++|++.+++++|+...++.++.+| .++++...|+.+|+++.++++..+.+.... .
T Consensus 309 --~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~----- 373 (475)
T TIGR00924 309 --GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGMLFCGASFLTFAASIWF----A----- 373 (475)
T ss_pred --ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c-----
Confidence 8999999999999999999999988754433332 223677889999999999999988765221 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 339 YDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 339 ~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
++...+|+||+++++++.++||++..|..++++++.+|+++||+++|++.+...+|+.+|+.+.+..
T Consensus 374 --~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 374 --DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred --CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123489999999999999999999999999999999999999999999999999999999988755
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=253.02 Aligned_cols=252 Identities=31% Similarity=0.620 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-------ccc
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-------GWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-------gw~ 105 (449)
...++++++++++|.|+++||..++.+||++++++ ++|.++|+|+|+++|+|+++++++.+++.+++ +|+
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 35578999999999999999999999999986542 34899999999999999999999999998543 699
Q ss_pred hhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCc
Q 013109 106 WGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKD 185 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 185 (449)
++|.++++.++++++++..+++++++++|++++.....+++..+.+++..... ....
T Consensus 162 ~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-----------------------~~~~ 218 (654)
T TIGR00926 162 LAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-----------------------EHWP 218 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-----------------------cccc
Confidence 99999999999999999888888877777777666777777766654322110 0011
Q ss_pred cchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeC
Q 013109 186 FSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIP 265 (449)
Q Consensus 186 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~ 265 (449)
..|+|.+... ..++.++|+|++++++++++..++||.++.|+.+.+..|+..++.+++ ++.+|
T Consensus 219 ~~~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~--g~~ip 281 (654)
T TIGR00926 219 LHWLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG--GFEIQ 281 (654)
T ss_pred hhHHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC--CEecC
Confidence 3466654311 234668899999999999999999999999999999999999998888 89999
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013109 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRL 330 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~ 330 (449)
+++++++|++.++++.|++...++|.++|+..+ +++..|+++|+++++++++.+...|..++
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888888776443 78999999999999999999998887754
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=251.81 Aligned_cols=319 Identities=17% Similarity=0.267 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhH
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPA 112 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~ 112 (449)
.+.+++++.++++|.|.+.|+..++++|++|+++ ++|+++++++|+..|+|+++||.++|++.+++|||+.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4567788999999999999999999999998765 246779999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcccccccc--CCCCCchhHHHHHHH-------HHHHhcc-CcCCCCccchhhcccccccccCCcccCC
Q 013109 113 VAMAIAVVSFFSGTRLFRNQ--KPGGSPLTRICQVVA-------ASIRKHK-VELPADKSLLYETADAESNITGSRKLDH 182 (449)
Q Consensus 113 ~~~~l~~i~~~~~~~~~~~~--~~~~~~~~~~~~vl~-------~~~~~~~-l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 182 (449)
+.++++++.+.+.++.++++ ++++++. |..+.+. ....... ...+.. .
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 245 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIATWLLHNQEI---------------------A 245 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHhcchH---------------------H
Confidence 87778777766665555443 2222222 2222111 1111000 000000 0
Q ss_pred CCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHh-hhccCCCCCC
Q 013109 183 TKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNSS 261 (449)
Q Consensus 183 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~-~~~~~~g~~g 261 (449)
.....+.......... .+.+..+. +|.++.+..+.+++..++||+.+.|.++.+..+.. ++|++.. |
T Consensus 246 ~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--g 313 (500)
T PRK09584 246 RMALGVVALGIVVIFG---------KEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--G 313 (500)
T ss_pred HHHHHHHHHHHHHHHH---------HHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--c
Confidence 0000000000000000 00011122 34444566677888999999999999999887764 4566666 8
Q ss_pred ceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 013109 262 FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL 341 (449)
Q Consensus 262 ~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~ 341 (449)
+.+|+++++++|++.++++.|+.+.+ ++|+.+| .++..++.+|++++++|++.+...+.. . .
T Consensus 314 ~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~-------~ 375 (500)
T PRK09584 314 IAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----A-------N 375 (500)
T ss_pred eEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----c-------C
Confidence 99999999999999999999999875 4455444 678899999999999999988775432 0 1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 342 PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 342 ~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+...+|.||++++++++|+||++..|.+++++++.+|+++||+++|+|.+..++|+.+++.+.+.+
T Consensus 376 ~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 376 DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123588999999999999999999999999999999999999999999999999999998888755
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-19 Score=183.97 Aligned_cols=321 Identities=13% Similarity=0.078 Sum_probs=187.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.|...|...+.+.+.+++++ +|+++++++....++|..+||.++|++.++++|||.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 567889999999999999999999998988875443 399999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
+.+..++.++......+..++ ++.+..|..+.+........+.+....... .+ .+.......+.
T Consensus 167 ~~~~~~~~~~l~~~~l~~~~~---~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~-~~------------~~~~~~~~~~~ 230 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPRQAG---RRDQPLNLGHALMLIVAILLLVYSAKTALK-GF------------LSLWVTSLTLL 230 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCCC---CCCCCCChHhHHHHHHHHHHHHHHHHhccc-cC------------CchHHHHHHHH
Confidence 887766655443332222111 111112222222111110000000000000 00 00000000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
.+..... .+..+|.+..+|..+.+ .++...+.....................+.+++...| ++
T Consensus 231 ~~~~~l~------~f~~~e~~~~~p~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g----------~s 293 (495)
T PRK14995 231 TGALLLG------LFIRTQLAASRPMIDMR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHG----------LS 293 (495)
T ss_pred HHHHHHH------HHHHHHhcCCCCCcCHH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CC
Confidence 0000000 00011112233333433 2222222222222222222222222233334444445 44
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013109 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
....+..+.+..+...+..++..++.+| .++++.+..|.++.+++++.+..... ..+.+.
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r---~g~~~~~~~g~~~~~~~~~~l~~~~~-----------------~~~~~~ 353 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSR---LGLRLVATGGMALSALSFYGLAMTDF-----------------STQQWQ 353 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHHHHhcC-----------------CCchHH
Confidence 5555555554444444444444444444 55566777888888888776654321 134555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.....++.|+|.++..++....+.+.+|++++|.+++++++.+++|+.+|.++.+.+.+
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999997743
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-18 Score=175.14 Aligned_cols=319 Identities=15% Similarity=0.162 Sum_probs=183.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.++|+|.|...|...+++.|.+|+++ |++++++++...++|..+||.++|++.++++|||.|++
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 467888999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.++..++..+......++ ++++.....|..+..........+....+. .+..+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~---------------------~~~~~~~~ 217 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPR---DKPAASENFDFLGLLLLSVGLGSLLYGLSE---------------------GPERGWFD 217 (485)
T ss_pred hhHHHHHHHHHHHHHcCC---ccccccCCCcHHHHHHHHHHHHHHHHHHhh---------------------CCCCCCCC
Confidence 876655554443332222 111111122333222222111100000000 00001111
Q ss_pred hhhhhhccccc---cccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013109 191 KAAVEIQSDNI---KESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 191 ~a~~~~~~~~~---~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
...+......+ ...+..++...+++..+.+ .++...+.......+.............+.+++...|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g--------- 287 (485)
T TIGR00711 218 SNEILILSITGLVAIIAFVVWELTDDNPLVDLR-LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLG--------- 287 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 10000000000 0000000111122222222 2222222222222222222222222222333333334
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
++..+.+.......+...+..++..++.+| .++++.+.+|.+++++++.++.+.. ....+
T Consensus 288 -~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r---~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~ 347 (485)
T TIGR00711 288 -YTALQAGLHILPVGLAPMLSSPIAGRMGDK---IDPRKLVTIGLILYAVGFYWRAFTF----------------TPDTP 347 (485)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHHHHHhccC----------------CCCCC
Confidence 222233333332333333333333344444 5666777888888888887665310 11245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++.+...++.|+|.++..++....+.+..|++++|.++|+.++.+++|+.+|+++.+.+.+
T Consensus 348 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 348 FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778999999999999989999999999999999999999999999999999887753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=148.74 Aligned_cols=268 Identities=10% Similarity=0.069 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++++.+.|++.+...|...+++.|.+|+++ |+++++++....++|.++||.+++++.++.+|++.|++.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67888999999999999999999999999999876 999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhccccccccCC-CCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 112 AVAMAIAVVSFFSGTRLFRNQKP-GGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
++..+++.+.....+.+ ++++ ++++.. ... .-+
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------------------------------~~~---~~~ 198 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALS-----------------------------------------NAV---LRD 198 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccc-----------------------------------------hhH---HHH
Confidence 76555554433322211 1111 000000 000 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccc--
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS-- 268 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~-- 268 (449)
. .+..++.++-.+...+......+..........+ .+.+.+..++ .+...
T Consensus 199 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~ 250 (365)
T TIGR00900 199 T---------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVAL--FPYVQSKYLG-----RGSTHYG 250 (365)
T ss_pred H---------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHhC-----CchHHHH
Confidence 0 0000000000011111122222222222111111 1111111122 11111
Q ss_pred -ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 269 -LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 269 -l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+.....+..++..++.. ++.+| .+.++.+..+.++.++++..+.+.. .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~--------~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 300 (365)
T TIGR00900 251 WVLAAFGLGALLGALLLG--------LLGRY---FKRMALMTGAIFVIGLAILVVGLTP-------------------PN 300 (365)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHH---hchhHHHHHHHHHHHHHHHHHHhhc-------------------hh
Confidence 12222222222222222 22222 3444556666666666666555431 13
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+......++.|++.+...+...+.+.+.+|+++||+++|+.+...++|..+|+.+.+.+.+
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778999999999999999999999999999999999999999999999999887653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-15 Score=151.29 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.++++|++.+...|...+++.|++|+|+ |+++++++....++|..+||.+++++.+++|||+.|++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 467888999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013109 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.++..++..+
T Consensus 169 ~~~~~~l~~~ 178 (390)
T PRK03545 169 IGGGALITLL 178 (390)
T ss_pred HHHHHHHHHH
Confidence 8765554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=151.63 Aligned_cols=267 Identities=19% Similarity=0.262 Sum_probs=158.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++++++.|+|.+...|...+++.|.+|+++ |++++++.....++|.++||.+++++.++++||+.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 44588999999999999999999999999999987 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhh
Q 013109 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 191 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 191 (449)
++..++..+......+..+++++..++..+ +..+...+.+
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKES---------------------------------------ESKKPKPLKP- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTTT---------------------------------------T--HHHCCCH-
T ss_pred cchhhhhhhhHhhhhhhccccccccccccc---------------------------------------cccccccccc-
Confidence 877766655322222111110000000000 0000000000
Q ss_pred hhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCce--eCcccc
Q 013109 192 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK--IPPASL 269 (449)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~--i~~~~l 269 (449)
..++.++...+..+......+...+........ .++....+ .. ...+.+
T Consensus 198 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~---~~~~~~~~~~ 248 (352)
T PF07690_consen 198 -----------------------GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLP---LYLQEVLG---FSGPSQAGLL 248 (352)
T ss_dssp ------------------------CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHCCHHHH---CCTHHHHHHH
T ss_pred -----------------------ccccccccchhhhhhhhhhHHHHHHHHhhcccc---hhhhhccC---CCHHHHHHHH
Confidence 011111111111122222222222222222211 12222222 11 000011
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013109 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
..+..+...+..++..+ +.+| .+..++..+...+..++.+.+...... .+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~----l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 300 (352)
T PF07690_consen 249 FSIFGIVGIIGSLLAGR----LSDR-------FGRRRRLLIAILLLILGALGLLLLPFS-----------------SSPV 300 (352)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHH-------TTCHHHHHHHHHHHHHHHHHHCCSHHH-----------------CHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHH-------cCcHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHH
Confidence 12222222222223232 3333 444455556655555555555443221 3456
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHh
Q 013109 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSS 401 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~ 401 (449)
+.+...++.|++.++..+...+.+.+.+|++++|+++|+.+...++|..+||
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6777888899999999999999999999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-15 Score=154.18 Aligned_cols=319 Identities=11% Similarity=0.058 Sum_probs=176.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.|...|...+++.|.+|+++ |.+++++.....++|..+||.++|++.++.+|||.|++
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 356778899999999999999999999999998775 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
+.+...++.+......++.+. + .+..|..+..........+... +.+. + ..+ ...........
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~-~---~~r~~~~~~~~~~~~~~~~~~~-----~~~~---~--~~~---~~~~~~~~~~~ 232 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNYTM-Q---TRRFDLSGFLLLAVGMATLTLA-----LDGS---K--GLG---LSPLAIAGLVA 232 (471)
T ss_pred HHHHHHHHHHHHHHhCCCccc-c---CCCCChHHHHHHHHHHHHHHHH-----HhcC---C--cCC---cchHHHHHHHH
Confidence 887665555444333222111 1 1111222211111100000000 0000 0 000 00000000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhH---hhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPI---WATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~---~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
........... .+...+++..+.| .++...+ .......+...... ....+.+++...|
T Consensus 233 ~~~~~~~~~~~------~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~g--------- 293 (471)
T PRK10504 233 VGVVALLLYLL------HARNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGML---PFMTPVFLQIGLG--------- 293 (471)
T ss_pred HHHHHHHHHHH------HHhcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcC---------
Confidence 00000000000 0000111111221 1111111 12222222222111 1111222222234
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
.+.......+....+......++..|+.+| +++++.+.+|.++.+++.+.+.+... ..+
T Consensus 294 -~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 352 (471)
T PRK10504 294 -FSPFHAGLMMIPMVLGSMGMKRIVVQVVNR---FGYRRVLVATTLGLALVSLLFMLVAL-----------------LGW 352 (471)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHHHhccc-----------------ccc
Confidence 223333333333333232222334444444 56667777788877777666554311 123
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
.+++....++.|++.++..+..+..+.+.+|++.+|.++|++++.+.+|+.+|+.+.+.+....+
T Consensus 353 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 353 YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566788999999999999999999999999999999999999999999999997765443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=146.75 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=161.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+|+ |++++++.+...++|..+||.++|++. +++|++.|++
T Consensus 97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 356778899999999999999999999999999876 999999999999999999999999999 6899999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.++..++..+......++ .++... ..+ ..+ ++.
T Consensus 170 ~~~~~~~~~i~~~~~~~~---~~~~~~-~~~----------------------------------------~~~--~~~- 202 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPA---YKLSTV-RTP----------------------------------------VRE--GMT- 202 (400)
T ss_pred HHHHHHHHHHHHHHhCCc---cccccc-chh----------------------------------------hHH--HHH-
Confidence 876655544332222111 000000 000 000 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
+..++.+ +... .+....++....+..... +.++.+. + +.....+++.
T Consensus 203 -----------------------~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~---p~~~~~~-~--~~~~~~g~l~ 249 (400)
T PRK11646 203 -----------------------RVLRDKR-FVTY---VLTLTGYYMLAVQVMLML---PIMVNDI-A--GSPSAVKWMY 249 (400)
T ss_pred -----------------------HHHcCch-HHHH---HHHHHHHHHHHHHHHHhh---hhhHHhh-c--CCchHHHHHH
Confidence 0001111 1111 111222222222221111 1122211 2 1001111122
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013109 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.++....+... ....+...| | .+..+++..++++.+++++.+... .+.++
T Consensus 250 ~~~~~~~~~~~----~~~~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~ 299 (400)
T PRK11646 250 AIEACLSLTLL----YPIARWSEK---R---FRLEHRLMAGLLIMSLSMFPIGMV--------------------SNLQQ 299 (400)
T ss_pred HHHHHHHHHHH----HHHHHHHHH---h---cchhHHHHHHHHHHHHHHHHHHHh--------------------hhHHH
Confidence 22222222111 111112222 2 344456778888888887666543 23445
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
.+...++.++|+++..|+..+.+.+.+|++++|+++|++++..++|..+|+.+.+.+.+.
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 555667889999999999999999999999999999999999999999999999988654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=139.92 Aligned_cols=263 Identities=10% Similarity=0.005 Sum_probs=165.0
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhh
Q 013109 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
..+.+.+++.+.+++.+.+...|...++..+. +++ |++.++......++|.++||.++|++.+++|||+.|+
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 35678888999999999999999999987543 233 7889999999999999999999999999999999998
Q ss_pred HhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh
Q 013109 110 IPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF 189 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l 189 (449)
+......+.++.+ ...++. ++++++.. +..+ .+-
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~----------------------------------------~~~~--~~~ 196 (382)
T TIGR00902 163 ILTAGLAFMLIGF-LIKPTI---PPKDAIPE----------------------------------------DESQ--GDS 196 (382)
T ss_pred HHHHHHHHHHHHH-HcCCCC---CCCccccc----------------------------------------cccc--cch
Confidence 7654433222222 211110 11100000 0000 000
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccc
Q 013109 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASL 269 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l 269 (449)
+...+.+.|+ ...+.+...+++....+..+.... +++. .| .+....
T Consensus 197 ----------------------~~~~~l~~~~---~~~~l~~~~l~~~~~~~~~~~~~~---~l~~-~g-----~s~~~~ 242 (382)
T TIGR00902 197 ----------------------AFIALLKNPM---NLRFLAAVCLIQGAHAAYYGFSAI---YWQA-AG-----ISASAT 242 (382)
T ss_pred ----------------------hHHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHH-CC-----CCHhHH
Confidence 0000011111 222222333334444444443222 2222 35 222222
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013109 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
..+. ....+.+.+...+.+|+.+| +++++.+.+|.++.++....+.+. .+.|
T Consensus 243 g~l~-----~~~~~~~i~~~~~~~~l~~r---~g~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~ 294 (382)
T TIGR00902 243 GLLW-----GIGVLAEIIIFAFSNKLFQN---CSARDLLLISAIACVGRWAIIGAI--------------------EAFP 294 (382)
T ss_pred HHHH-----HHHHHHHHHHHHHhHHHHhh---CCHHHHHHHHHHHHHHHHHHHHhH--------------------hhHH
Confidence 2222 22222222222334445454 778888899999999888877664 4566
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHH-HHHHHHHHHHhHHHhhhhc
Q 013109 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~-~~~~lG~~lg~~l~~~~~~ 409 (449)
.++...+++|++.++..+....++.+. |++.++.++++++ +..++|..+|+.+.+.+.+
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778999999999999999999988 9999999999987 5778999999999987754
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=138.23 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.++++|++.|...|...+++.|.+|+++ |+++.+++....++|.++||.+++++.++++||+.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 568889999999999999999999999999998876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHH
Q 013109 111 PAVAMAIAV 119 (449)
Q Consensus 111 ~~~~~~l~~ 119 (449)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 775544433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-14 Score=161.52 Aligned_cols=285 Identities=11% Similarity=-0.026 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|++.+.+.|...+++.|.+++++ |.+++++..++.++|.++||+++|++.+..+|++.|++
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 467889999999999999999999999999999887 99999999999999999999999999999999999954
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.++..+++++..... ++.++.++ +.+.. . ....
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-----------------------------------------~----~~~~ 212 (1140)
T PRK06814 180 LMGIAVLGWLASLFI-PKTGNAAP-DLKID-----------------------------------------R----NIIR 212 (1140)
T ss_pred HHHHHHHHHHHHhhC-CCCCCCCC-CCeec-----------------------------------------c----chHH
Confidence 444333333322221 11111000 00000 0 0000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhh---HhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLP---IWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~---~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
+.....+...+-.. +.+....++.+.....+.+ +.++...++ .-....+
T Consensus 213 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~g--~~~~~~g 264 (1140)
T PRK06814 213 -----------------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL---PLLAKETLG--GDENVAT 264 (1140)
T ss_pred -----------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHcC--CchHHHH
Confidence 00001111111111 1222222233322222222 222222233 0000112
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCCcc
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELI-RLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~ 346 (449)
++.....+..++...+..+ +.++ ......+.+|.++++++.+.+.+.... ............ =....
T Consensus 265 ~~~~~~~~g~~ig~~~~g~--------l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 332 (1140)
T PRK06814 265 LFLAVFSVGVAVGSFLASK--------LSEG---RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV-FLSKR 332 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HhCC---ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh-hhccc
Confidence 2223333333333333332 2222 222234445555555544433321000 000000000000 00013
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.|++++..++.|++.++..++..+++++.+|++++|+++|++++..++|..+|+.+.+.+.
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999999999999999999999999999999999999888764
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=138.28 Aligned_cols=266 Identities=13% Similarity=0.038 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...|...+.+.|.+++++ |.++.++.+...++|..+||.+++++.++.+|++.|++
T Consensus 99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 356778899999999999999999999999998776 88899999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCC-CCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPG-GSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF 189 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l 189 (449)
.++..++..+......+ +++++ +++.. +-
T Consensus 173 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------------------------------------------~~ 202 (406)
T PRK15402 173 FAALAALSFFGLWRAMP---ETAGRVGEKLS-----------------------------------------------LK 202 (406)
T ss_pred HHHHHHHHHHHHHHhCC---CCCcccccccc-----------------------------------------------HH
Confidence 77665555443322211 11110 00000 00
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhh---hhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc
Q 013109 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWA---TGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~---~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~ 266 (449)
+..++.+..++...++. .............+. .+.++....+ .
T Consensus 203 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~g-----~-- 248 (406)
T PRK15402 203 ------------------------ELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIAL---SPVILISGEQ-----L-- 248 (406)
T ss_pred ------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHhC-----C--
Confidence 00001111111111111 111111111111111 1111111223 1
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+............+...+..++..++.+| .+.++.+.+|.++.+++...+...... ...
T Consensus 249 ---~~~~~g~~~~~~~~~~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~ 307 (406)
T PRK15402 249 ---SSYEYGLLQVPVFGALIAGNLTLARLTSR---RPLRSLIRMGLWPMVAGLLLAALATVI---------------SSH 307 (406)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHHc---------------ccc
Confidence 11111111111111111112233344444 556667778888888887766654211 013
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.+|++...++.++|++...+..+..+... +++++|++++++++.+.+|..+|+++.+.+.
T Consensus 308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 308 AYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566778888999999999998887776544 4599999999999999999999999888664
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-13 Score=138.77 Aligned_cols=263 Identities=12% Similarity=0.064 Sum_probs=158.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...|...+++.|.+|+++ |+++.++.++..++|..+||.++|++.+..+|+|.|++
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 456778888999999999999999999999998776 89999999999999999999999999988899999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...+++.+...... +.+++..+.. ... .+...
T Consensus 182 ~~~~~~~~~~~~~~l~----~~~~~~~~~~-----------------------------------------~~~-~~~~~ 215 (417)
T PRK10489 182 AAAGTFITLLPLLRLP----ALPPPPQPRE-----------------------------------------HPL-RSLLA 215 (417)
T ss_pred HHHHHHHHHHHHHhCC----CCCCCCcccc-----------------------------------------cch-HHHHH
Confidence 7766555544332221 1111100000 000 00000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccc--
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS-- 268 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~-- 268 (449)
.. +.+.+.+.. +.. .+... .+......... .+.+.+..++ .++..
T Consensus 216 ~~---------------------~~~~~~~~~-~~~--~~~~~-~~~~~~~~~~~---~p~~~~~~~g-----~~~~~~g 262 (417)
T PRK10489 216 GF---------------------RFLLASPVV-GGI--ALLGG-LLTMASAVRVL---YPALADEVWQ-----MGAAQIG 262 (417)
T ss_pred HH---------------------HHHHcChHH-HHH--HHHHH-HHHHHHhHHHh---hHHHHHhccC-----CChhHhH
Confidence 00 000000111 111 11111 11111111111 1222232233 22211
Q ss_pred -ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 269 -LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 269 -l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+.....+..++...+ ..+..+| .++.+.+..+.++.+++++.+... .+
T Consensus 263 ~~~~~~~~g~~ig~~~--------~~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~ 311 (417)
T PRK10489 263 LLYAAVPLGAALGALT--------SGWLAHS---ARPGLLMLLSTLGSFLAVGLFGLM--------------------PM 311 (417)
T ss_pred HHHHHHHHHHHHHHHH--------HHHhhhc---cCcchHHHHHHHHHHHHHHHHHcc--------------------ch
Confidence 222222222222222 2222222 233345667777777776655432 24
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+......++.|++.+...+....++.+.+|++.||+++|+++...++|..+|+.+.+.+.+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 45556677888999988888888999999999999999999999999999999999997764
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-13 Score=135.49 Aligned_cols=262 Identities=9% Similarity=0.037 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+++++.+...|...+++.|. .++ |+++++......++|..+||.++|++.+++|||..|++
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 5678888899999999999999998888876 233 78888899999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...++..+.. ...+ +.+|++++.. + ......++
T Consensus 164 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~-------------------------------------~--~~~~~~~~-- 198 (382)
T PRK11128 164 LTAGVASMLLGQ-LLRP---TIMPQGESRQ-------------------------------------Q--ESAGWPAW-- 198 (382)
T ss_pred HHHHHHHHHHHH-HccC---CCCCcccccc-------------------------------------c--cccccchH--
Confidence 765444333322 2111 1111110000 0 00000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
..+.+.|.+ ..+.+...+....+....+.... +.++ .| .+.+...
T Consensus 199 -----------------------~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~---~~~~-~g-----~s~~~~g 243 (382)
T PRK11128 199 -----------------------KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAI---YWQA-AG-----YSASTIG 243 (382)
T ss_pred -----------------------HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHH---HHHH-CC-----CCHhHHH
Confidence 000111111 11112222222222222222221 2221 23 1111122
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013109 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.+.+...+ ...+...+ .+|+.+| ++.++.+.++.++.+++++.+... .+.|+
T Consensus 244 ~~~~~~~~-~~~~~~~~----~g~l~~r---~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~ 295 (382)
T PRK11128 244 YLWSLGVV-AEVLIFAF----SNRLFRR---WSARDLLLLSAICGVVRWGLMGST--------------------TALPW 295 (382)
T ss_pred HHHHHHHH-HHHHHHHH----HHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhh--------------------hhHHH
Confidence 22221111 11112222 2233333 566677888888888877666543 35666
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHH-HHHHHHHHHHhHHHhhhhc
Q 013109 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~-~~~~lG~~lg~~l~~~~~~ 409 (449)
.++..++.|+++++..+....+..+. |++.++.++++.+ +..++|..+|+.+.+.+.+
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999988887 5666789999886 6678888999998887754
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-13 Score=136.81 Aligned_cols=262 Identities=15% Similarity=0.113 Sum_probs=150.1
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHH
Q 013109 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA 116 (449)
Q Consensus 37 ~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~ 116 (449)
++.++++|+|.|...|...+++.|.+|+|| |.+++++.....++|.++||.++|++.+. .|+..|++.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 677889999999999999999999999886 99999999999999999999999999874 57777776665444
Q ss_pred HHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhhhhhhh
Q 013109 117 IAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEI 196 (449)
Q Consensus 117 l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~ 196 (449)
++.+..... ++.++++++. + .+..+.. + ++.+..
T Consensus 165 ~~~~~~~~l-~~~~~~~~~~-~-~~~~~~~----~-----------------------------------~~~~~~---- 198 (393)
T PRK11195 165 LAALFNLFI-PRLGARRPGQ-S-WNPIALL----R-----------------------------------DFFHAC---- 198 (393)
T ss_pred HHHHHHhcC-CCCccccccc-C-CCHHHHH----H-----------------------------------HHHHHH----
Confidence 443322221 1111100000 0 0000000 0 000000
Q ss_pred ccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccccchhHHH
Q 013109 197 QSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLS 276 (449)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~~ln~~~ 276 (449)
+.+.+.+.. +. .......+|.+.......+. .+++..++ ++....+.
T Consensus 199 -----------------~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~lg----------~s~~~~G~ 245 (393)
T PRK11195 199 -----------------RVLWRDKLG-RF--SLAGTTLFWGAGATLRFLVL---AWAPVALG----------ITLNQPAY 245 (393)
T ss_pred -----------------HHHHhCchh-HH--HHHHHHHHHHHHHHHHHHHH---HHHHHHcC----------CChhHHHH
Confidence 000000101 11 11112223333322221111 12222233 12222333
Q ss_pred HHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHH
Q 013109 277 VIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYF 356 (449)
Q Consensus 277 ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~i 356 (449)
+.....+...+...+..|+.++ .+.++.+..|. ++++....+... .+.|+.+...+
T Consensus 246 ~~~~~~~g~i~g~~~~~~l~~~---~~~~~~~~~g~-~~~~~~~~~~~~--------------------~~~~~~~~~~~ 301 (393)
T PRK11195 246 LQAVVAIGIAVGAGAAARLVTL---ETVLRVLPAGI-LMGLVVLLMALQ--------------------HSLLPAYPLLI 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CcccchHHHHH-HHHHHHHHHHHH--------------------hHHHHHHHHHH
Confidence 3333333333333333444333 34445566664 334433333221 34566677778
Q ss_pred HHHHHHHHHhhhhHHHHhhhcChhh-HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 357 LIGCAEVFTFIGQLEFFYEQAPDAM-RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 357 l~glge~l~~p~~~~~i~~~aP~~~-~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.|++.++..++.++.+++..|++. +|+++++.++.+++|..++.++.+.+.
T Consensus 302 ~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 302 LIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988777765 799999999999999999999988664
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-13 Score=135.00 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|+|.|...|...+++.|.+|+++ |+++++++....++|.++||.+++++.++.+|++.|++
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 367889999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHH
Q 013109 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 154 ~~~~~~~~~~~ 164 (399)
T TIGR00893 154 EGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHH
Confidence 77655444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=133.84 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+...+++.++++|+|.+...|...+.+.|.+++|+ |+++++++....++|..+||.+++++.+++||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45678899999999999999999999999998877 999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhh
Q 013109 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 191 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 191 (449)
.+..++..+ ..++ .++.++++.+.. ++.
T Consensus 185 ~~~~~~~~~---~~~~-~~~~~~~~~~~~----------------------------------------------~~~-- 212 (399)
T PRK05122 185 MLLALLGLL---LARP-RPAVPPVKGERL----------------------------------------------PFR-- 212 (399)
T ss_pred HHHHHHHHH---HHhc-CCCCCCCCccch----------------------------------------------hHH--
Confidence 654332222 1111 111111000000 000
Q ss_pred hhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccccc
Q 013109 192 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSI 271 (449)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~~ 271 (449)
+..|...+.... ...+...+....+.... +... .+ .. ..+....
T Consensus 213 -------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~-~~---~~-~~~~~~~ 256 (399)
T PRK05122 213 -------------------------RVLGRVWPYGMG---LALASIGFGTIATFITL---YYAA-RG---WD-GAALALT 256 (399)
T ss_pred -------------------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHH-cc---cc-cchHHHH
Confidence 001111111100 00111111111111111 1111 12 10 0011111
Q ss_pred hhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHH
Q 013109 272 FDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQ 351 (449)
Q Consensus 272 ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 351 (449)
+..+..++..++... +.+| .++++.+.++.++.++++..+... .+.+..
T Consensus 257 ~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 305 (399)
T PRK05122 257 LFGVAFVGARLLFGN----LINR-------LGGLRVAIVSLLVEILGLLLLWLA--------------------PSPWMA 305 (399)
T ss_pred HHHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHH
Confidence 222222222222222 2333 455566777777777777666543 344556
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++..++.|++.+...|.....+.+..|++.||+++|+++....+|..+++.+.+.+.+
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777899999999999888888899999999999999999999999999888886653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-13 Score=140.20 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=169.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+++.+++..++.|++.+...|.-++++-+..|+|+ ..++.++..+..|++-++||.+||.+....|-.+.|++
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999887 89999999999999999999999999988999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
+++.+++.++.+...++... ++..+.....+-+...+
T Consensus 175 nalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~---------------------------------------- 211 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPPP---PSSLPRERFFSALREGL---------------------------------------- 211 (524)
T ss_pred HHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHH----------------------------------------
Confidence 99887776655443332211 11111000000000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
+.+...+.+...+ ....++.+........++. .....++ ..+..+.
T Consensus 212 -----------------------ryv~~~~~l~~~l---~~~~~~~l~~~a~~aLlPl---~a~~~l~-----~~a~~yG 257 (524)
T PF05977_consen 212 -----------------------RYVRSSPPLRSVL---LRSFLFNLFASAVWALLPL---FARDVLG-----GGASGYG 257 (524)
T ss_pred -----------------------HHHhcchHHHHHH---HHHHHHHHhhhHHHHhhhH---HHHHHhC-----CcHHHHH
Confidence 0000111111111 1111121111111111211 1122223 1111222
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013109 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.+.+.. -+ ..+..-++ ..++.++ .+..+.+..+.++.+++++.+++. .+.|.
T Consensus 258 ll~a~~-gv-Gai~Gal~---~~~l~~~---~~~~~lv~~~~~~~a~~~~~lal~--------------------~~~~~ 309 (524)
T PF05977_consen 258 LLLAAF-GV-GAILGALL---LPRLRRR---LSSRRLVLLASLLFALALLLLALS--------------------PSFWL 309 (524)
T ss_pred HHHHHH-HH-HHHHHHHH---HHHhhcc---cCcchhhHHHHHHHHHHHHHHhcc--------------------hHHHH
Confidence 222111 11 11112222 2223222 455556777888888877777664 45677
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
..+..++.|++.....++.++.+++.+|++++|++++++.+....+..+|..+.+.+.+
T Consensus 310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999998888887754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=131.84 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+++ |++++++.+...++|..+||.+++++.++.+|++.|++
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 356778899999999999999999999999999776 99999999999999999999999999998999999998
Q ss_pred hHHHHHHHHHHH
Q 013109 111 PAVAMAIAVVSF 122 (449)
Q Consensus 111 ~~~~~~l~~i~~ 122 (449)
.+...++..+..
T Consensus 165 ~~~~~~~~~~~~ 176 (385)
T TIGR00710 165 LSLAGILLSALI 176 (385)
T ss_pred HHHHHHHHHHHH
Confidence 776555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=129.38 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=167.0
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013109 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+-..+++.++++|++.|+..|.+.+...++..|..|+++ |+++.++......++-.+|..+|.++.|.+|||+.
T Consensus 96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 334789999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccc
Q 013109 108 FGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFS 187 (449)
Q Consensus 108 F~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 187 (449)
|++-.+..+++++..+...+ +++.++..+
T Consensus 170 F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~------------------------------------------------- 198 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLP--PSEISGSLP------------------------------------------------- 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CccCCCCCC-------------------------------------------------
Confidence 99766655555544333222 011110000
Q ss_pred hhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013109 188 FFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 188 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
.++++..+.+|...++.....-.+.+...+..|.+....+...-|
T Consensus 199 --------------------------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g--------- 243 (394)
T COG2814 199 --------------------------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAG--------- 243 (394)
T ss_pred --------------------------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccC---------
Confidence 000111112222223333333333344444444444444444434
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
++.-..-.+++..-+...+...+..|+.+| ++++.+....+++++.++.+.+.. .+
T Consensus 244 -~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr----~~~~~l~~~~~l~a~~~l~l~~~~-------------------~~ 299 (394)
T COG2814 244 -FSVSAVSLVLLAFGIAGFIGNLLGGRLADR----GPRRALIAALLLLALALLALTFTG-------------------AS 299 (394)
T ss_pred -CCHhHHHHHHHHHHHHHHHHHHHHhhhccc----cchhHHHHHHHHHHHHHHHHHHhc-------------------ch
Confidence 222222223333333333334455665543 555666667788888887766642 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC--hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--DAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP--~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+..+...++.|++..... .....+.++ ++.+..+++++....|+|..+|.++.+.+.+
T Consensus 300 ~~~~~~~~~~wg~a~~~~~---~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~ 360 (394)
T COG2814 300 PALALALLFLWGFAFSPAL---QGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLD 360 (394)
T ss_pred HHHHHHHHHHHHHHhhhhh---hHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444433 344444444 6788999999999999999999999997764
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=134.00 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+++ |++++++++...++|..++|.+++++.+..+|++.|++
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 466788899999999999999999999999998876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 013109 111 PAVAMAIA 118 (449)
Q Consensus 111 ~~~~~~l~ 118 (449)
.+...++.
T Consensus 175 ~~~~~~~~ 182 (406)
T PRK11551 175 GGVGPLLL 182 (406)
T ss_pred HHHHHHHH
Confidence 76543333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-12 Score=126.67 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.|...|...+++.|.+|+++ |++++++.....++|..+||.+++++.+..+|++.|++
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 456778899999999999999999999999998776 99999999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 013109 111 PAVAMAI 117 (449)
Q Consensus 111 ~~~~~~l 117 (449)
.+...++
T Consensus 177 ~~~~~~~ 183 (398)
T TIGR00895 177 GGIAPLL 183 (398)
T ss_pred hhhHHHH
Confidence 7543333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=133.45 Aligned_cols=267 Identities=13% Similarity=0.122 Sum_probs=155.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+ ..|...+.+.|.+++++ |+++.+++....++|..+||.+++++.+..+|++.|++
T Consensus 105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 457788899999999866 46888889999998776 89999999999999999999999999998999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
..+..++..+......++.. ++..++... .+-+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------------~~~~ 210 (408)
T PRK09874 178 TASVLFLCFLVTLFCIRENF--QPVSKKEML---------------------------------------------HMRE 210 (408)
T ss_pred HHHHHHHHHHHHHHHhccCc--ccccchhhh---------------------------------------------HHHH
Confidence 87665555443322222110 010000000 0000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
.. . ..++.+.. + .+......+..........+.. +.....+ . .. ...
T Consensus 211 ~~-----~----------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~-~~--~~~ 257 (408)
T PRK09874 211 VV-----T----------------SLKNPKLV-L--SLFVTTLIIQVATGSIAPILTL---YVRELAG---N-VS--NIA 257 (408)
T ss_pred HH-----H----------------hCcCCchH-H--HHHHHHHHHHHHHHHHHHHHHH---HHHHHhc---c-ch--HHH
Confidence 00 0 00000100 0 0111111111111111111111 1111101 0 00 000
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013109 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.....+.....+...+..+...++.+| .++++.+.++.++.+++++.+... .+.+.
T Consensus 258 -~~~g~~~~~~~l~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 313 (408)
T PRK09874 258 -FISGMIASVPGVAALLSAPRLGKLGDR---IGPEKILITALIFSVLLLIPMSFV--------------------QTPLQ 313 (408)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHHHHh--------------------ccHHH
Confidence 000111111111222222233334443 555566677777666666554432 24455
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.....++.|++++...|...+.+.+.+|++.+|+.+++++..+.+|..+|+.+.+.+.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 6667788999999999999999999999999999999999999999999999988775
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=131.92 Aligned_cols=253 Identities=9% Similarity=0.084 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.++|+|.+...|...+.+.|.+|+|+ |+++++++....++|..+||.+++++.+++||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 467888999999999999999999999999999877 99999999999999999999999999998999998876
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
..+..++.. ...+ +.++.+++++... ++.
T Consensus 184 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~----------------------------------------------~~~- 212 (392)
T PRK12382 184 TMVLPLLAW---AFNG-TVRKVPAHAGERP----------------------------------------------SLW- 212 (392)
T ss_pred HHHHHHHHH---HHHH-hccCCCCCcccCc----------------------------------------------hHH-
Confidence 544322222 1111 1111111000000 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHH-hhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRL-LPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASL 269 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~-~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l 269 (449)
+..|...+. .........+... .. + .+.++.. .+ .. ..+..
T Consensus 213 --------------------------~~~~~~~~~~~~~~l~~~~~~~~----~~-~--~~~~~~~-~~---~~-~~~~~ 254 (392)
T PRK12382 213 --------------------------SVVGLIWKPGLGLALQGVGFAVI----GT-F--VSLYFAS-KG---WA-MAGFT 254 (392)
T ss_pred --------------------------HHHHHHHHhHHHHHHHHHHHhHH----HH-H--HHHHHHh-cC---Cc-hhHHH
Confidence 000000000 0000011111111 01 1 0111111 12 10 01111
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013109 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
........++..++.. ++.+| +++++.+.++..+.+++++.+... .+.+
T Consensus 255 ~~~~~~~~~~~~~~~g--------~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 303 (392)
T PRK12382 255 LTAFGGAFVLMRVLFG--------WMPDR---FGGVKVAIVSLLVETVGLLLLWLA--------------------PTAW 303 (392)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHh---cCCCeehHHHHHHHHHHHHHHHHc--------------------ccHH
Confidence 1111222222222222 23333 455556777888888877665542 2445
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+..+..++.+++++...|.....+.+..|+++||+++|+++....+|+.+|+.+.+.+.+
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677889999999999988899999999999999999999999999999999987754
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=129.77 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccc
Q 013109 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWG 105 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~ 105 (449)
..+++++.++|+|.|...|...+++.|.+++++ |++..++.....++|.++|+.+++.+. +.++||
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 457889999999999999999999999999887 999999999999999999999877653 357999
Q ss_pred hhhhHhHHHHHHHH
Q 013109 106 WGFGIPAVAMAIAV 119 (449)
Q Consensus 106 ~iF~i~~~~~~l~~ 119 (449)
+.|++.++..+++.
T Consensus 171 ~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 171 IPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998776554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-12 Score=125.86 Aligned_cols=241 Identities=20% Similarity=0.263 Sum_probs=165.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+|+ |++++++.+...++|..+||.+++++.++.+|++.|++
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 356788999999999999999999999999999877 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...+++.+...... +..
T Consensus 159 ~~~~~~~~~~~~~~~~-----------~~~-------------------------------------------------- 177 (352)
T cd06174 159 LAILGLLLALLLLFLL-----------RLL-------------------------------------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHH-----------HHH--------------------------------------------------
Confidence 8766555554432211 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
..+.+................. ...+...+ .-....+.+.
T Consensus 178 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~ 217 (352)
T cd06174 178 -----------------------------------LLLALAFFLLSFGYYGLLTYLP---LYLQEVLG--LSAAEAGLLL 217 (352)
T ss_pred -----------------------------------HHHHHHHHHHHhHHHHHHHHHH---HHHHHhcC--CCHHHHHHHH
Confidence 0000000000011000000000 00111111 0000111233
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013109 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQ-RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~-~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
.......++..++... +.+|. +.++ .+.++.++..++++.+... .+.+
T Consensus 218 ~~~~~~~~i~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~ 266 (352)
T cd06174 218 SLFGLGGILGALLGGL----LSDRL-------GRRRLLLLIGLLLAALGLLLLALA--------------------PSLA 266 (352)
T ss_pred HHHHHHHHHHHHHHHH----HHHHH-------HhhhHHHHHHHHHHHHHHHHHHHh--------------------ccHH
Confidence 3334444444444444 34443 3334 6778888888888777654 2466
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
......++.+++++...+...+.+.+..|+++|++.+|+.+..+++|..+++.+.+.+.+
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999999999999999999999999999987753
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-12 Score=127.41 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhh--HHHHHHHHHHHHHHHhhhhheeccccccchhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF--FNWFYFSINIGALIASSVLVWIQDNEGWGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~--~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF 108 (449)
.+.+.+++.+.+++.+.+...|...+++.+..++++ |.++ .++.+...++|..+||.+++++.++++||+.|
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f 158 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF 158 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence 456777778888888888888999998888876654 4433 67888889999999999999999999999999
Q ss_pred hHhHHHHHHHHHH
Q 013109 109 GIPAVAMAIAVVS 121 (449)
Q Consensus 109 ~i~~~~~~l~~i~ 121 (449)
++.++..++..+.
T Consensus 159 ~~~~~~~~~~~~~ 171 (375)
T TIGR00899 159 LTAALAFVLCGVL 171 (375)
T ss_pred HHHHHHHHHHHHH
Confidence 9887765554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=132.42 Aligned_cols=261 Identities=13% Similarity=0.101 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++.+.+.+.+.+.+.|...+...|.+++++ |++++++.+...|+|.++||.+++++.+ .+|++.|++.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 45566667777788878888999999999998776 9999999999999999999999999885 7999999987
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhh
Q 013109 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 191 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 191 (449)
++..+++++......++ +++++++... + .| +.
T Consensus 168 ~~~~~i~~i~~~~~~~~---~~~~~~~~~~------------------------------------------~--~~-~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQR---SEKAIATETG------------------------------------------S--VW-SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhc---cccccccchh------------------------------------------h--hh-hh
Confidence 76666654433221111 1111100000 0 00 00
Q ss_pred hhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc---c
Q 013109 192 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA---S 268 (449)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~---~ 268 (449)
..+.+.|. ...+......+...+....+.........+ +.+ .+.+ .
T Consensus 200 ----------------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~g~ 248 (395)
T PRK10054 200 ----------------------SVLLQDKA---LLWFTCSGFLASFVSGAFASCISQYVMVVA-DSD-----FAEKVVAV 248 (395)
T ss_pred ----------------------hhhccCce---ehHHHHHHHHHHHHHHHhhhhHHHHHHHhc-ccc-----hHHHHHHH
Confidence 00000011 111111111111111111111111100111 112 1111 1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+...+....+... +...|+.+| .++++.+..|+++.++++..+.+.. .+.
T Consensus 249 ~~~~~~~~~~~~~--------~~~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~ 298 (395)
T PRK10054 249 VLPVNAAMVVSLQ--------YSVGRRLNA---ANIRPLMTAGTLCFVIGLVGFIFSG-------------------NSL 298 (395)
T ss_pred HHHhhhhheeeeh--------hHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHcc-------------------hHH
Confidence 1222222212211 123333333 4566677788888888876665421 244
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+.+.+..++.++|++...|...+.+.+.+|++++|++.+..+ ...+|..+|+.+.+.+.+
T Consensus 299 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 299 LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 445566789999999999999999999999999999998766 455889999998887764
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-12 Score=129.00 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.+...+...+.+.|.+++++ |.++++++....++|+.+||.+++++.++.|||+.|++
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 467889999999999999877888888999999876 89999999999999999999999999988999999998
Q ss_pred hHHHHHHHHHH
Q 013109 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.++..+++.+.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 87765555543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=128.87 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+...++++++++|+|.|. .+...+.+.+++|+++ |++++++.....++|.++++++++++.+++|||+.|++
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4678899999999999996 4556666789999776 99999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 013109 111 PAVAMAIA 118 (449)
Q Consensus 111 ~~~~~~l~ 118 (449)
.+...++.
T Consensus 150 ~~~l~~~~ 157 (368)
T TIGR00903 150 IAAVAAAG 157 (368)
T ss_pred HHHHHHHH
Confidence 55443333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-12 Score=126.46 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc--------
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-------- 103 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-------- 103 (449)
+.+.+++...+.+++.+...|...+++.|.+|+|+ |+++.++...+.++|.++|+.+++++..+.+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 44555666667788889999999999999998876 9999999999999999999999999988888
Q ss_pred cchhhhHhHHHHHHHHHH
Q 013109 104 WGWGFGIPAVAMAIAVVS 121 (449)
Q Consensus 104 w~~iF~i~~~~~~l~~i~ 121 (449)
||+.|++.++..+++.+.
T Consensus 156 wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLV 173 (356)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999888766555544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-12 Score=128.59 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~ 109 (449)
.+.+.++++++++|+|.|...+...+++.|++| ++ |+++++++....+.|..+|+.+++++.++. +||+.|.
T Consensus 95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456788999999999999999999999999987 55 899999999999999999999999998875 8999887
Q ss_pred HhHHH
Q 013109 110 IPAVA 114 (449)
Q Consensus 110 i~~~~ 114 (449)
+.+..
T Consensus 168 ~~~~~ 172 (393)
T PRK09705 168 WWALP 172 (393)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=124.89 Aligned_cols=84 Identities=7% Similarity=0.092 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.|...|...+++.|.+++++ |.++++++....++|..+||.+++++.+..+||+.|++
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 467889999999999999999999999999988765 88999999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013109 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.+...++..+
T Consensus 163 ~~~~~~~~~~ 172 (382)
T PRK10091 163 IAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHH
Confidence 8765544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-12 Score=125.89 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHh-hhhheeccccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS-SVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp-~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++++.+.|++.|...|...+++.|.+|+++ |++++++.....++|..+|| .+++.+.+..+|++.|+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 367888999999999999999999999999999876 99999999999999999999 67788888899999999
Q ss_pred HhHHHHHHHHH
Q 013109 110 IPAVAMAIAVV 120 (449)
Q Consensus 110 i~~~~~~l~~i 120 (449)
+.+...++..+
T Consensus 155 ~~~~~~~~~~~ 165 (379)
T TIGR00881 155 VPGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHHH
Confidence 87755444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.9e-12 Score=144.16 Aligned_cols=269 Identities=13% Similarity=0.061 Sum_probs=153.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc--------c
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------E 102 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------~ 102 (449)
.+.+.+++.++++|++.|...|...+++.|.+++++ |+++++++....++|.++||.+++++.+. +
T Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~ 174 (1146)
T PRK08633 101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI 174 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 357888999999999999999999999999999887 99999999999999999999999999875 2
Q ss_pred -ccchhhhHhHHHH-HHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCccc
Q 013109 103 -GWGWGFGIPAVAM-AIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180 (449)
Q Consensus 103 -gw~~iF~i~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l 180 (449)
+|+|.+.+.+... +++++.. +..+ +.++...... +.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~-------------------~~------------------- 212 (1146)
T PRK08633 175 LGRIAPAGLVLLAVAVLGLIFA-YRLP---KVPAAAPEVF-------------------DK------------------- 212 (1146)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-hcCc---CCCCCCcccc-------------------cc-------------------
Confidence 3444443333222 2222222 1111 1111100000 00
Q ss_pred CCCCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHH---HhhHhhhhHHHHHHhhccchhHHHHHhhhccCC
Q 013109 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVR---LLPIWATGIIFSAVYSQMSSLFVLQGERMDTHV 257 (449)
Q Consensus 181 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~---~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~ 257 (449)
.... ..- +..+..+.+++ +....+....++.......+.+. .++...+
T Consensus 213 ~~~~--~~~------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 263 (1146)
T PRK08633 213 KKYL--FPK------------------------LLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFP---AYAKEVL 263 (1146)
T ss_pred cccc--cHH------------------------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHh
Confidence 0000 000 00000111111 11111222222322222222211 1222222
Q ss_pred CCCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013109 258 GNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHN 337 (449)
Q Consensus 258 g~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~ 337 (449)
| .+.. ...+.+.....+...+...+..++.+| .+....+.+|.++++++.+++...
T Consensus 264 g-----~s~~----~~~g~~~~~~~ig~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~------------ 319 (1146)
T PRK08633 264 G-----LDNT----FQVQYLLAASAIGIGIGSLLAGRLSGR---HIELGLVPLGALGLALSLFLLPTA------------ 319 (1146)
T ss_pred C-----CCcH----HHHHHHHHHHHHHHHHHHHHHHHHhCC---ceEccchhHHHHHHHHHHHHHHHh------------
Confidence 3 1111 011111111111111112223334333 444556667777777777666553
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 338 YYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 338 ~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.+.+++++..++.|++.++..++..+++.+.+|++.||+++|+.++..++|..+++.+...+.
T Consensus 320 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 --------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred --------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777889999999999999999999999999999999999999999987776665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-12 Score=126.63 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc--cchhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG--WGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g--w~~iF 108 (449)
.+.+.+++.+++.|+|.+...|...+++.|.+|+++ |+++++++....++|..+||.+++.+.+..+ ||+.|
T Consensus 98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 467788999999999999999999999999999876 9999999999999999999999999987766 99999
Q ss_pred hHhHHHHHHH
Q 013109 109 GIPAVAMAIA 118 (449)
Q Consensus 109 ~i~~~~~~l~ 118 (449)
++.+...++.
T Consensus 172 ~~~~~~~~~~ 181 (405)
T TIGR00891 172 FISILPIIFA 181 (405)
T ss_pred HHHHHHHHHH
Confidence 8766544333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-11 Score=122.28 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccc
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWG 105 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~ 105 (449)
.+.+.+++.+++.|++.|...|...+.+.+..++++ |+++++++....++|..+||.+++++.+...|+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 467888999999999999999998888888888765 899999999999999999999999998764333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=127.80 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~i 110 (449)
+.+.+++.++++|++.|...|....++.+++|+++ |+++++++....++|..+||.+++++.+.. +||+.|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 35678899999999999999999999999999887 999999999999999999999999999884 99999998
Q ss_pred hHHHHHHHHH
Q 013109 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.++..++..+
T Consensus 204 ~~~~~~~~~~ 213 (465)
T TIGR00894 204 FGIVGCAWSL 213 (465)
T ss_pred hhHHHHHHHH
Confidence 7765444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=123.54 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|+|.|...+...+.+.+.+| |+ |+++.+++....++|.++++.+.+.+.+..+||+.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 467888899999999999988888888888886 44 89999999999999998877677777777899999998
Q ss_pred hHHHHHHHHHH
Q 013109 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.++..++..+.
T Consensus 162 ~~~~~~~~~~~ 172 (377)
T TIGR00890 162 MGIIFLLVIVL 172 (377)
T ss_pred HHHHHHHHHHH
Confidence 77655444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-11 Score=122.63 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++.+.+.|++.+...+...+++.|.+++++ |++++++.+...++|..+||.+++++.++.+|++.|++.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 56678899999999999999999999999998776 999999999999999999999999999989999999987
Q ss_pred HHHHHHHHHH
Q 013109 112 AVAMAIAVVS 121 (449)
Q Consensus 112 ~~~~~l~~i~ 121 (449)
+...++..+.
T Consensus 152 ~~~~~~~~~~ 161 (377)
T PRK11102 152 ALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHH
Confidence 7655554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=128.37 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=69.0
Q ss_pred hHHHHHHH-HHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 32 QSATFFVA-LYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~-l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++. +++.|+|.|...+...+++.+.++ ++ |+++.++.+...++|..++|.+++++.+.+|||+.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 45555543 578899999876777788889885 44 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 013109 111 PAVAMAIAVVSFFS 124 (449)
Q Consensus 111 ~~~~~~l~~i~~~~ 124 (449)
.++..+++.+..++
T Consensus 179 ~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 179 LGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766555544333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=124.77 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|+|.|...|...+++.|.+|+++ |+++.+++..+.++|.+++|.+++++.+.++||+.|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 467889999999999999999999999999999886 99999999999999999999999999999999999998
Q ss_pred hHHH
Q 013109 111 PAVA 114 (449)
Q Consensus 111 ~~~~ 114 (449)
.+..
T Consensus 178 ~~~~ 181 (426)
T PRK12307 178 GLLP 181 (426)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=122.88 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...+...++..|.+++++ |.++.+++.....+|..+||.+++++.++.+||+.|++
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 356788999999999999888988899999988766 88999999999999999999999999998999999998
Q ss_pred hHHHHHH
Q 013109 111 PAVAMAI 117 (449)
Q Consensus 111 ~~~~~~l 117 (449)
.++..++
T Consensus 168 ~~~~~~~ 174 (394)
T PRK11652 168 LLLLGAG 174 (394)
T ss_pred HHHHHHH
Confidence 7654443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-11 Score=120.70 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.++|+|.+...+...+++.|.+++++ +.+.++......++|..+||.+++++.++++||+.|++
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 356778899999999999888888999999998776 78899999999999999999999999999999999998
Q ss_pred hHHHHHHHHHH
Q 013109 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 166 ~~~~~~~~~~~ 176 (401)
T PRK11043 166 LFAITLLLILP 176 (401)
T ss_pred HHHHHHHHHHH
Confidence 77655544433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-11 Score=121.13 Aligned_cols=85 Identities=18% Similarity=0.332 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhh---heeccccccchh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL---VWIQDNEGWGWG 107 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lg---g~L~~~~gw~~i 107 (449)
.+.+.+++++.+.|+|.|...+...+++.|.+|+++ |++++++++...++|.++||.++ +++.+..+||+.
T Consensus 125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~ 198 (481)
T TIGR00879 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198 (481)
T ss_pred cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence 345678999999999999999999999999999887 99999999999999999999999 888788999999
Q ss_pred hhHhHHHHHHHHHH
Q 013109 108 FGIPAVAMAIAVVS 121 (449)
Q Consensus 108 F~i~~~~~~l~~i~ 121 (449)
|++.++..++.++.
T Consensus 199 f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 199 LGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99866554444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=118.19 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHH-HHHhhhhheeccccccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA-LIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~-~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++.+.+.|+|.+...+...+.+.+.+++++ |+++.+++....++|. .+||.+++++.+.+||+..+|.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 46677888999999998888888888889998876 9999999999999996 6899999999988897766664
Q ss_pred hH
Q 013109 111 PA 112 (449)
Q Consensus 111 ~~ 112 (449)
..
T Consensus 178 ~~ 179 (402)
T TIGR00897 178 AL 179 (402)
T ss_pred HH
Confidence 43
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=123.06 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccc
Q 013109 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWG 105 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~ 105 (449)
.++++.++++|+|.|+..|...+++.+++|+++ |+++.++.....++|..+|+.+..++. .++|||
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 358999999999999999999999999999887 999999999888889888886655442 258999
Q ss_pred hhhhHhHHHHH
Q 013109 106 WGFGIPAVAMA 116 (449)
Q Consensus 106 ~iF~i~~~~~~ 116 (449)
+.|++.++..+
T Consensus 193 ~~f~i~~~~~l 203 (490)
T PRK10642 193 IPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHH
Confidence 99998765433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=118.87 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.++|++.+...+...+++.|.+++++ |.+++++.+...++|..+||.+++++.+..+|++.|++
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 356678889999999999999999999999998876 99999999999999999999999999888999999998
Q ss_pred hHHHHHHHHHH
Q 013109 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 163 ~~~~~~i~~~~ 173 (392)
T PRK10473 163 MAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHH
Confidence 77655444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-10 Score=118.30 Aligned_cols=81 Identities=15% Similarity=0.289 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc------cccc
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD------NEGW 104 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~------~~gw 104 (449)
.+.+.+++.+++.|++.|...|...+++.+.+|+++ |+++++++....++|..+||.+++++.+ ..||
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 456788999999999999999999999999999876 9999999999999999999999998864 4699
Q ss_pred chhhhHhHHHHHH
Q 013109 105 GWGFGIPAVAMAI 117 (449)
Q Consensus 105 ~~iF~i~~~~~~l 117 (449)
|+.|++.++..++
T Consensus 168 r~~f~~~~~~~l~ 180 (412)
T TIGR02332 168 QWLFLLEGFPSVI 180 (412)
T ss_pred hHHHHHHHHHHHH
Confidence 9999987655443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=127.46 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~i 110 (449)
+.+.+++.|+++|++.|...|++..+..++.|++| |++..++.+....+|.+++..++|+|.++ +||+++|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 44567899999999999999999999999999998 99999999999999999999999999998 999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...++..+++.+... +.|.++|...- +| + ..+.
T Consensus 201 ~g~~g~i~~~~w~~~~~----d~P~~h~~is~--------~E-----------l----------------------~~I~ 235 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYS----DSPSKHPNISE--------KE-----------L----------------------KYIE 235 (466)
T ss_pred HHHHHHHHHHHHHHHhc----CCcccCCCCCH--------HH-----------H----------------------HHHH
Confidence 88655443333322211 22333322100 00 0 0000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCcee-Ccccc
Q 013109 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKI-PPASL 269 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i-~~~~l 269 (449)
..+. ... .++..-...|.+++-.++|+..+..+.-...........+.+++..++ +.+ ..+++
T Consensus 236 ~~k~--~~~-----------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~---f~v~~~G~~ 299 (466)
T KOG2532|consen 236 KGKS--EAH-----------VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG---FDVRETGFL 299 (466)
T ss_pred hccc--ccc-----------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC---CChhhhhHH
Confidence 0000 000 000000123445666777776666666555555666677777876665 333 35667
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM--GIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i--~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+++.-+...+...+...+.+.+..| .-. .....|+ .+++...++.++.+.+... -+
T Consensus 300 salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~------------------~~ 357 (466)
T KOG2532|consen 300 SALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD------------------EH 357 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC------------------Cc
Confidence 7787777777777777776666554 211 1222333 4555555555555555410 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
. +........+++.......+........-++..+..+|+.+...++...+++++++.+.+
T Consensus 358 ~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 358 R-LLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred c-hHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 1 223333333344444445555444445356789999999999999999999999997763
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=119.82 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.|...|...+++.+++++++ |++++++++...++|..+||.+++++.++++||+.|++
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 456777888888999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 013109 111 PAVAMAI 117 (449)
Q Consensus 111 ~~~~~~l 117 (449)
.++..++
T Consensus 183 ~~i~~~~ 189 (434)
T PRK11663 183 AGIIAIV 189 (434)
T ss_pred HHHHHHH
Confidence 7654443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-10 Score=118.75 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccc
Q 013109 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWG 105 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~ 105 (449)
..+++.++++|+|.|...|...+++.+.+|+++ |++..+.......+|.++++.+.+++. +++|||
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 368889999999999999999999999999887 899999999999999999887776664 357999
Q ss_pred hhhhHhHHHH
Q 013109 106 WGFGIPAVAM 115 (449)
Q Consensus 106 ~iF~i~~~~~ 115 (449)
+.|++.++..
T Consensus 200 ~~f~~~~~~~ 209 (438)
T PRK09952 200 IPFLFSIVLV 209 (438)
T ss_pred HHHHHHHHHH
Confidence 9999876543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=114.75 Aligned_cols=79 Identities=14% Similarity=-0.016 Sum_probs=69.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---------
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------- 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------- 101 (449)
.+++.++++.+++|.|.+..++..++++++.-++|+ +++.+++......+|.++||.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578999999999999999999999999999999887 88999999999999999999999987632
Q ss_pred -------cccchhhhHhHHHH
Q 013109 102 -------EGWGWGFGIPAVAM 115 (449)
Q Consensus 102 -------~gw~~iF~i~~~~~ 115 (449)
.+|++.|++.+...
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~ 102 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGAL 102 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 47899998554443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=124.35 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~iF~ 109 (449)
..+|++.+.+.+.|+|.+.+.|..+++++|.|++++ |+++++++|+++++|..+|.+++..+.+..+ |||.|+
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 578999999999999999999999999999999987 9999999999999999999999999998777 999999
Q ss_pred HhHHHHHHHHHHHHhc
Q 013109 110 IPAVAMAIAVVSFFSG 125 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~ 125 (449)
..+++.++..++..+.
T Consensus 193 ~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLF 208 (493)
T ss_pred eehHHHHHHHHHHHhh
Confidence 8887666655554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=118.27 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccc
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEG 103 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~g 103 (449)
+...+++.++++|+|.|...|...+++.|.+|+++ |+++.++.+...+.|.++++.+++.+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 34578999999999999999999999999999887 999999999999999999988766554 2589
Q ss_pred cchhhhHhHHHHH
Q 013109 104 WGWGFGIPAVAMA 116 (449)
Q Consensus 104 w~~iF~i~~~~~~ 116 (449)
||+.|++.++..+
T Consensus 197 Wr~~F~i~~~~~l 209 (432)
T PRK10406 197 WRIPFALGAVLAV 209 (432)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998665443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=114.60 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc--cchhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG--WGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g--w~~iF 108 (449)
.+.+.+++++++.|+|.|...+...+++.|.++ ++ |+++++++....++|..+|+.+++++.++.+ ||+.|
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 356777899999999999988888888888886 44 8999999999999999999999999887653 99988
Q ss_pred hHhHHHHH
Q 013109 109 GIPAVAMA 116 (449)
Q Consensus 109 ~i~~~~~~ 116 (449)
.+.+...+
T Consensus 158 ~~~~~~~~ 165 (355)
T TIGR00896 158 AWWALPAL 165 (355)
T ss_pred HHHHHHHH
Confidence 86554333
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=117.53 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhh--hhHHHHHHHHHHHHHHHhhhhheeccccccchhhh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS--SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~--~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
+.+.+++...+.+...+...|...+++.|..++++ |. ...++.....++|.++||.+++++.+++|||+.|+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 45554443333333344678888888888776554 43 34478889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHH
Q 013109 110 IPAVAMAIAVVSF 122 (449)
Q Consensus 110 i~~~~~~l~~i~~ 122 (449)
+.++..++..+..
T Consensus 178 ~~~~~~~~~~~~~ 190 (393)
T PRK15011 178 SAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 8776555544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-10 Score=117.82 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------ccc
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNE 102 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~ 102 (449)
...+.++++++++|+|.|...|...++++|++|+++ |++++++......+|.++++.+++++. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 345678899999999999999999999999999887 999999999999999999988766442 457
Q ss_pred ccchhhhHhHHHHHHHHH
Q 013109 103 GWGWGFGIPAVAMAIAVV 120 (449)
Q Consensus 103 gw~~iF~i~~~~~~l~~i 120 (449)
+||+.|++.++..++..+
T Consensus 192 gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 192 GWRYMFASEAIPALLFLM 209 (479)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 999999987665554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=121.63 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc---ccchh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE---GWGWG 107 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~---gw~~i 107 (449)
.+.+.+++.+.++|++.|...|...+++.+++|+++ |+++++++....++|.++|+.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 568889999999999999999999999999999987 999999999999999999999988776643 69998
Q ss_pred hhHhHHHHHH
Q 013109 108 FGIPAVAMAI 117 (449)
Q Consensus 108 F~i~~~~~~l 117 (449)
|.+.+...++
T Consensus 194 f~~~g~~~~~ 203 (467)
T PRK09556 194 FIFPSIIALI 203 (467)
T ss_pred HHHHHHHHHH
Confidence 8876654443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=118.19 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHH-HHHhhhhheeccccccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA-LIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~-~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++.+++.|++.|...|...+.+.+++|+++ |++++++++...++|. +++|+++..+....+||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 46677888899999999999988889999998876 9999999999999986 5567654444344599999998
Q ss_pred hHHHHHHH
Q 013109 111 PAVAMAIA 118 (449)
Q Consensus 111 ~~~~~~l~ 118 (449)
.++..++.
T Consensus 193 ~~~~~~~~ 200 (452)
T PRK11273 193 PAFAAILV 200 (452)
T ss_pred HHHHHHHH
Confidence 77655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-10 Score=116.65 Aligned_cols=83 Identities=10% Similarity=0.203 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec-cccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-DNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~-~~~gw~~iF~ 109 (449)
.+.+.+++.+.++|++.|...+...+.+.+.+|+++ |+++++..+...++|..++|.+.+++. ++.+||+.|+
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 456788899999999999999999999999998766 899999999999999999999988875 4579999999
Q ss_pred HhHHHHHHHH
Q 013109 110 IPAVAMAIAV 119 (449)
Q Consensus 110 i~~~~~~l~~ 119 (449)
+.+...++..
T Consensus 167 ~~~~~~~~~~ 176 (394)
T PRK03699 167 CIGLVYVAIF 176 (394)
T ss_pred HHHHHHHHHH
Confidence 7665444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-10 Score=118.30 Aligned_cols=85 Identities=12% Similarity=0.231 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc-ccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD-NEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~-~~gw~~iF~ 109 (449)
.+.+.+.+.+.+.+++.+...+...++..|.+|+++ |+++.++...+.++|.++|+.+++++.+ ..|||..|+
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 467778888999999999999999999999999876 9999999999999999999999999998 579999999
Q ss_pred HhHHHHHHHHHH
Q 013109 110 IPAVAMAIAVVS 121 (449)
Q Consensus 110 i~~~~~~l~~i~ 121 (449)
+.+...++..+.
T Consensus 179 i~a~l~ll~~l~ 190 (491)
T PRK11010 179 LMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHH
Confidence 877655555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-10 Score=115.35 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC---
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--- 378 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP--- 378 (449)
++.++.+.+|.++++++++.+.+.+ .+.+..++..++.+++.+...+...+.+.+.+|
T Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 284 FGRKILFAGGILLMVLGYLIFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5556677888888888877665431 234455666788899999999998888888766
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 379 ----DAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 379 ----~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
++.+|.++|++++...+|..+|+.+.+.+.+..+
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999998865443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-10 Score=116.20 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccch
Q 013109 35 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWGW 106 (449)
Q Consensus 35 ~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~~ 106 (449)
.++++++++|+|.|...|+..+++.|.+|+++ |+++.+++....++|..+|+.+++.+. +.+|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 46899999999999999999999999999887 999999999999999888888887763 4689999
Q ss_pred hhhHhHH
Q 013109 107 GFGIPAV 113 (449)
Q Consensus 107 iF~i~~~ 113 (449)
.|++.+.
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9997543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-10 Score=116.67 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+++.+++.+++.|++.|...|...+++.|.+|+++ |+++.++......+|.+++|.+++++.+ ||+.|++
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~ 248 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA 248 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 467889999999999999999999999999999887 9999999999999999999999877653 9999998
Q ss_pred hHHHHHHHHHHH
Q 013109 111 PAVAMAIAVVSF 122 (449)
Q Consensus 111 ~~~~~~l~~i~~ 122 (449)
.++..++..+..
T Consensus 249 ~~i~~~~~~~~~ 260 (505)
T TIGR00898 249 VSLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHHH
Confidence 775555444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=121.11 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|++.+...+...+++.|.+++++ |++++++++...++|..+||.+++++.++++||+.|++
T Consensus 106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 467788999999999999999999999999999876 99999999999999999999999999999999999997
Q ss_pred hHHH
Q 013109 111 PAVA 114 (449)
Q Consensus 111 ~~~~ 114 (449)
.++.
T Consensus 180 ~~~~ 183 (496)
T PRK03893 180 GILP 183 (496)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=111.85 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~ 109 (449)
.+.+.+++..++.++..+...|...+++.|.+|+++ |+++.++..++.++|..+|+.+++++.+. .|||..|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 356666666677788899999999999999999887 99999999999999999999999999885 59999999
Q ss_pred HhHHHHHHHHH
Q 013109 110 IPAVAMAIAVV 120 (449)
Q Consensus 110 i~~~~~~l~~i 120 (449)
+.++..++..+
T Consensus 166 i~a~~~l~~~l 176 (402)
T PRK11902 166 LMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHH
Confidence 87765544443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-10 Score=115.28 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec
Q 013109 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ 99 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~ 99 (449)
..+.+.++++++++|+|.|...+..++++.|..++++ |.+.++++.....+|..+||.+++.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998755443 666788999999999999999887543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=113.45 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc----------c
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD----------N 101 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~----------~ 101 (449)
+.+.++++++++|++.+.. +...+++.|.+|+++ |+++.+++....++|..+|+.+++.+.+ +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 6778889999999997765 557889999999876 9999999998889999888888877654 3
Q ss_pred cccchhhhH
Q 013109 102 EGWGWGFGI 110 (449)
Q Consensus 102 ~gw~~iF~i 110 (449)
.+|||.|++
T Consensus 163 ~~w~~~~~~ 171 (366)
T TIGR00886 163 LAWGWAFVI 171 (366)
T ss_pred ccccchhHH
Confidence 489999943
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-10 Score=113.83 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhee-ccccccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI-QDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L-~~~~gw~~iF~i 110 (449)
+.+.+++.+++.|++.|...|.....+.|.+|+++ |++++++++...++|..++|.+.+++ ..+.+||+.|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45667788899999999999999999999999887 99999999999999999998887754 445799999998
Q ss_pred hHHHHHHHHH
Q 013109 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.++..++..+
T Consensus 191 ~~~~~~i~~~ 200 (438)
T TIGR00712 191 PAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHH
Confidence 7766555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=114.09 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=169.5
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc---cch
Q 013109 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG---WGW 106 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g---w~~ 106 (449)
..+.+.+++.-++.|+++|.+ ....+.+..+||||+ ++.+++++. .-|+|..+...+++++....+ |+.
T Consensus 102 ~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~ 173 (417)
T COG2223 102 YPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRN 173 (417)
T ss_pred CCchHHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 345578888889999998875 566778999999997 899999999 999999999999999999999 999
Q ss_pred hhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCcc
Q 013109 107 GFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDF 186 (449)
Q Consensus 107 iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 186 (449)
+-.+..+.++++.+.+++..+.-++.++..++..
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------------------------------- 207 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------------------------------- 207 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccccccc----------------------------------------------
Confidence 8888888888877776665544333222111100
Q ss_pred chhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc
Q 013109 187 SFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266 (449)
Q Consensus 187 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~ 266 (449)
+ .+.|...+....|..+..|......+-..-...+.+.+++++
T Consensus 208 ----------------------------~-~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg-------- 250 (417)
T COG2223 208 ----------------------------P-AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG-------- 250 (417)
T ss_pred ----------------------------h-hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 0 111222222223333444433333332222333445566667
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++...++.....-|+.+.+..|+..++.+| .+..+.+.+.++.++++...+...... .....
T Consensus 251 --~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR---~Gg~rv~~~~f~~~~~~~~~l~~~~~~-------------~~~~~ 312 (417)
T COG2223 251 --LSPVTAGLIAFLFPLIGALARPLGGWLSDR---IGGRRVTLAVFVGMALAAALLSLFLTG-------------FGHGG 312 (417)
T ss_pred --CChhhHHHHHHHHHHHHHHHHhccchhhhh---ccchhHHHHHHHHHHHHHHHHHccccc-------------cccCc
Confidence 566666677777788888888888888888 898888899999888888877764211 01113
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh---hhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD---AMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~---~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+.+..+...+.+.+..++-+ .-+++..|. ++.|.+.|+...+.++|+..-+...+...+
T Consensus 313 ~~~~~~~~~l~l~~~~G~Gn----Gsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 313 SFVVFVAVFLALFVFAGLGN----GSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred chHHHHHHHHHHHHHhccCc----chheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 33333333333333332222 333444443 266777777777777777666666665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-10 Score=118.02 Aligned_cols=321 Identities=12% Similarity=0.020 Sum_probs=176.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhh
Q 013109 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
..+...+..+..+.|+|.|... .....++|..|.+. |...+.+..+..-+...+||.++..+..+-+|||.|+
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 3667779999999999987765 45666899998776 7777777776666666678888877777789999999
Q ss_pred HhHHHHHHHHHHHHhccc--cccccCCCC-C-----chhHHHHHHHHHHHhccCcCCCCccc--hhhcccccccccCCcc
Q 013109 110 IPAVAMAIAVVSFFSGTR--LFRNQKPGG-S-----PLTRICQVVAASIRKHKVELPADKSL--LYETADAESNITGSRK 179 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~~~--~~~~~~~~~-~-----~~~~~~~vl~~~~~~~~l~~~~~~~~--l~~~~~~~~~~~~~~~ 179 (449)
++++...++++..++..+ ..++.+.++ . +..|+.+.++..........+..=.+ .++|
T Consensus 201 ~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W------------ 268 (599)
T PF06609_consen 201 IFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPW------------ 268 (599)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCC------------
Confidence 988766666544332222 111111111 1 22477777766654443333332111 1233
Q ss_pred cCCCCccchhhhhhhhhccccccccCCCCccc--cchhHHHHHHHHHHhhHhhhhHHHHH---HhhccchhHHHHHhhhc
Q 013109 180 LDHTKDFSFFDKAAVEIQSDNIKESVNPWRLC--TVTQVEELKAIVRLLPIWATGIIFSA---VYSQMSSLFVLQGERMD 254 (449)
Q Consensus 180 l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~v~~~k~~~~~~~~~~~~~~f~~---~~~q~~~~~~~~~~~~~ 254 (449)
.++.++.-+......... +..||.+ .++|....|.+.....+...+++.+. .+......|..+...+.
T Consensus 269 -~Sa~VIa~lviG~~~Lv~------F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf 341 (599)
T PF06609_consen 269 -KSAHVIAPLVIGFVLLVA------FVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVF 341 (599)
T ss_pred -CCccchhhHHHHHHHHHH------HHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 233333322221111111 1223322 12444333322211112222222222 23333333444443332
Q ss_pred cCCCCCCcee-CcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013109 255 THVGNSSFKI-PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV 333 (449)
Q Consensus 255 ~~~g~~g~~i-~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~ 333 (449)
.. . .... ..++..........+...+... +.++. + ..++.+.+|.+++.+++..++...
T Consensus 342 ~~-d--~~~~~~~~~~s~~~~fg~~~g~~i~g~----l~~~i-r-----~~Kw~li~~~~~~ta~~Gama~~~------- 401 (599)
T PF06609_consen 342 GS-D--PISITEIGWISSPVGFGSCAGAVILGL----LFSKI-R-----HIKWQLIFGSVLMTAFCGAMAAVR------- 401 (599)
T ss_pred cC-C--CcccceeehhhhhHHHHHHHHHHHHHH----HHHHc-c-----chhHHHHHHHHHHHHHHHHHHHcc-------
Confidence 11 0 0000 1233444444444443333333 23332 1 234566788888777666655432
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 334 REHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 334 ~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+++ .+.+ +...++.++|.+....+....++-.+|++..|.++|+....|.+|+.+|.++...+
T Consensus 402 --------~~n-~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 402 --------PDN-KNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred --------CCC-cchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 1222 34456778888888888888888999999999999999999999999999988755
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=111.83 Aligned_cols=87 Identities=17% Similarity=0.032 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec-----c-----
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-----D----- 100 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~-----~----- 100 (449)
.+++.+++.+++.|+| |...+.....+.+++|+++ |+++++++....|+|..+++++++.+. .
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5778899999999998 5577889999999999887 999999998778888877766665433 2
Q ss_pred --------ccccchhhhHhHHHHHHHHHHHHh
Q 013109 101 --------NEGWGWGFGIPAVAMAIAVVSFFS 124 (449)
Q Consensus 101 --------~~gw~~iF~i~~~~~~l~~i~~~~ 124 (449)
..+|+.++++-.+..+++.+..++
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234666666655555455444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-10 Score=113.91 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=70.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++...+.+. .+.++++...++.+++.....+...+++.+..|++.
T Consensus 289 ~g~~~~~~~~~~l~~~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 348 (420)
T PRK09528 289 IGAKNALLLAGTIMAVRIIGSGFA--------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL 348 (420)
T ss_pred hCcchhhHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 455556778888888877766553 356677777889999998888888899999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSAL-SLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl-~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++...+. +++..++|..+|+.+.+.+.+
T Consensus 349 ~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 349 SATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred eeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 9987765 788899999999999887754
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-09 Score=106.24 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHH
Q 013109 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA 116 (449)
Q Consensus 37 ~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~ 116 (449)
.......++..+...+...++..+..++++ ++.+.+...+...+|.++|+.+.+++.+++|||..|++.+...+
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~ 174 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPL 174 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 334444556666677777777666666554 67778888888899999999999999999999999998776655
Q ss_pred HHHHH
Q 013109 117 IAVVS 121 (449)
Q Consensus 117 l~~i~ 121 (449)
+..+.
T Consensus 175 ~~~~~ 179 (390)
T TIGR02718 175 ASLVC 179 (390)
T ss_pred HHHHH
Confidence 54444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-09 Score=112.98 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---------
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------- 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------- 101 (449)
.+.+.+++++++.|+|.|+..|...+++.+.+|++. |++.++++.+...+|.++++.++.++..+
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~ 326 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS 326 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence 457888999999999999999999999999999876 99999999999999999999877655432
Q ss_pred ----cccchhhhHhHHHHHHHHHH
Q 013109 102 ----EGWGWGFGIPAVAMAIAVVS 121 (449)
Q Consensus 102 ----~gw~~iF~i~~~~~~l~~i~ 121 (449)
.+||+.|++.++..++.++.
T Consensus 327 ~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 327 AYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH
Confidence 36899888776555444443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.5e-09 Score=106.71 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=75.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChh-
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA- 380 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~- 380 (449)
++.++.+.+|.++.+++++.+.+.. ..+.|++....++.++|+++..+...+...+.+|.+
T Consensus 291 ~g~~~~~~~g~~~~~i~~~~~~~~~------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 291 IGKKNTFLIGALLGTCGYLLFFWVS------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 6677788889988888887665421 135666677788899999999999999999988865
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 381 ------MRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 381 ------~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
.+|.++|++++.+.+|..+|+.+.+.+....+
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46999999999999999999999987765544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-09 Score=114.48 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc---------
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE--------- 102 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~--------- 102 (449)
....++++++++|+|.+...|...+++.|.+|+++ |++.+++++....+|+++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35678899999999999999999999999999887 999999999999999999999999987643
Q ss_pred -------------ccchhhhHhHHHHHHHHHHHH
Q 013109 103 -------------GWGWGFGIPAVAMAIAVVSFF 123 (449)
Q Consensus 103 -------------gw~~iF~i~~~~~~l~~i~~~ 123 (449)
+|+..|++.++..++..+.++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266778876655554444333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=105.73 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.++++...... .+.+++++..++.+++.........++..+..|++.
T Consensus 281 ~g~~~~l~~~~~l~~l~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T TIGR00882 281 IGAKNALLIAGTIMSVRIIGSSFA--------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL 340 (396)
T ss_pred hccchhHHHHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 455566778888888777654432 466677778889999988877777788888889998
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSAL-SLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl-~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+++..+. ++....+|+.+++.+.+.+.+
T Consensus 341 ~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 341 SATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred EEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8887766 678999999999998887754
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=104.96 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---------
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------- 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------- 101 (449)
.+.+.+++++++.|+|.|...+..++.+.+..|+++ |++..++.....++|..+||.+++.+...
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 467888999999999999999999999999888776 78889999999999999999999877432
Q ss_pred -----------------cccchhhhHhHHHHHHH
Q 013109 102 -----------------EGWGWGFGIPAVAMAIA 118 (449)
Q Consensus 102 -----------------~gw~~iF~i~~~~~~l~ 118 (449)
.+||+.|++.+...++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~ 199 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV 199 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999998766544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=112.27 Aligned_cols=290 Identities=14% Similarity=0.076 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhH
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPA 112 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~ 112 (449)
.....+.+++.+++.+...+...++..|..+ |++ +.++...++.|...++|.++|+.++|++.++++|+.+|++.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3444457889999999999999999999998 442 124557778888899999999999999999999999999877
Q ss_pred HHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhhh
Q 013109 113 VAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKA 192 (449)
Q Consensus 113 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a 192 (449)
...++..+...+.+++.....|+..... .. .+. .........
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~----~~~--------------------------------~~~~~~~~~- 237 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIGTYL-EM----NMA--------------------------------LLTLGVLAN- 237 (468)
T ss_pred HHHHHHHHHHHhcccccccccccccccc-hh----hhh--------------------------------hhhhhHHHH-
Confidence 6655553332222111000011100000 00 000 000000000
Q ss_pred hhhhccccccccCCCCccccchhHHHHHHHHHHhhHhh--hhHHH-HHHhhccchh-HHHHHhhhccCCCCCCceeCccc
Q 013109 193 AVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWA--TGIIF-SAVYSQMSSL-FVLQGERMDTHVGNSSFKIPPAS 268 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~--~~~~f-~~~~~q~~~~-~~~~~~~~~~~~g~~g~~i~~~~ 268 (449)
..+.+.+.+..++...++. ..+.+ +......... +..+ ...+| .++
T Consensus 238 -------------------~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~----~~~lG-----~s~-- 287 (468)
T TIGR00788 238 -------------------VKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCAT----TQCLP-----GGP-- 287 (468)
T ss_pred -------------------HHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEE----cccCC-----CCc--
Confidence 0000111111111111111 11111 1111111111 1111 11223 222
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
-+.+.+.....+...+...+.+|+.+| ++.++.+.++.++.+++.+........ -+ ...+ -.+.
T Consensus 288 ---~~~G~~~~~~~v~~i~g~~~~~~~~~~---~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~--~~~g-------i~~~ 351 (468)
T TIGR00788 288 ---SFSGMSKVVGNLGSLCGVGGYDRFLKT---FPYRLLFGVTTLLYTLSSLFDLILVKR-WN--LAFG-------ISDE 351 (468)
T ss_pred ---chhhhHHHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHhCceeeeec-cc--cccC-------CCCe
Confidence 222222222222222222234444444 777788888888887777543221100 00 0000 0123
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
++.....++.+++.++.+.+.+.++.+.+|++.+|+..|+.+..+++|+.+|+.+.+.+.+.
T Consensus 352 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 352 VFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred eeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999999999999999999999999999999999888877653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=106.05 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=79.7
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhh--heeccccccch
Q 013109 29 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL--VWIQDNEGWGW 106 (449)
Q Consensus 29 ~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lg--g~L~~~~gw~~ 106 (449)
...+.+.+.+-..+.|.-+|.-.|.....++++|+.+| |++..++|..+-|+|+.+.|++. +++..+++||.
T Consensus 113 fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~ 186 (448)
T COG2271 113 FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRA 186 (448)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhH
Confidence 34588899999999999999999999999999999988 99999999999999999999999 99999999999
Q ss_pred hhhHhHHHH-HHHHHHHHhc
Q 013109 107 GFGIPAVAM-AIAVVSFFSG 125 (449)
Q Consensus 107 iF~i~~~~~-~l~~i~~~~~ 125 (449)
.|++++++. +++++.+...
T Consensus 187 ~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 187 AFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 999998544 4444444433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=106.74 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013109 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+-+.+++.++++|.++|+|.+....+..++++|.||+|+ +|++++++.--.+.+|.++||..||.+.+..|++..
T Consensus 154 afg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 154 AFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred HHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 345688899999999999999999999999999999887 499999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHh
Q 013109 108 FGIPAVAMAIAVVSFFS 124 (449)
Q Consensus 108 F~i~~~~~~l~~i~~~~ 124 (449)
|+|.+.++++-..+-++
T Consensus 229 FlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988777765554333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=109.27 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc---------c
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD---------N 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~---------~ 101 (449)
.+.+.+++.+++.|+|.+...+ ....+.+++|+++ |++++++.....++|..+|+.+.+.+.. .
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 3566778889999999987654 5567889999876 9999999998888998888777765532 2
Q ss_pred cccchhhhHhHHHHHHHHH
Q 013109 102 EGWGWGFGIPAVAMAIAVV 120 (449)
Q Consensus 102 ~gw~~iF~i~~~~~~l~~i 120 (449)
.|||+.|++.++..++..+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5899999987765544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.6e-08 Score=101.54 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc------------
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD------------ 100 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~------------ 100 (449)
.+.++++++++|+|.|+..|....++.+.+|+++ |+++.++.+...++|.++|+.++.++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 5779999999999999999999999999999987 9999999999999999999988875431
Q ss_pred -----------ccccchhhhHhHHHHHHH
Q 013109 101 -----------NEGWGWGFGIPAVAMAIA 118 (449)
Q Consensus 101 -----------~~gw~~iF~i~~~~~~l~ 118 (449)
..+||+.|.+.++..++.
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHH
Confidence 247999998766544333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.7e-09 Score=101.27 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
..+.....+.++......+-....+.+..|++.||...|+.....+++.++||++.+....++-
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ 416 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence 3567777889999999999999999999999999999999999999999999999987765444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-07 Score=98.06 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhee--cccc--------
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI--QDNE-------- 102 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L--~~~~-------- 102 (449)
.+.+.+++.+.-+.....++...++++|+.|+++ ++++.+++++....++|.++|+.+|+++ .+.+
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 3556677777778888889999999999999886 2236899999999999999999999875 2211
Q ss_pred -----ccchhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCC
Q 013109 103 -----GWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGS 177 (449)
Q Consensus 103 -----gw~~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 177 (449)
+.++.|++.++.++++.+...+..++.+..++++.+.. ++. +.
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~~-------~~---------- 237 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EAA-------PP---------- 237 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hcc-------cc----------
Confidence 67889999888777766665444443211000000000 000 00
Q ss_pred cccCCCCccchhhhhhhhhccccccccCCCCccccchhHHHHH----HHHHHhhHhhhhHHHHHHhhccchhHHHHHhhh
Q 013109 178 RKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELK----AIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 253 (449)
Q Consensus 178 ~~l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k----~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~ 253 (449)
+ +......+ .+-+++.| .+.+++..-...-.-|..+....|.+.-+..+-
T Consensus 238 ~--~~~~~~~~------------------------~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~ 291 (477)
T TIGR01301 238 S--KHGEEAFF------------------------GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYG 291 (477)
T ss_pred c--ccchhhhH------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcC
Confidence 0 00000000 00011111 122233333333333444444455555443221
Q ss_pred ccCCCCCCceeC---cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHHH
Q 013109 254 DTHVGNSSFKIP---PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM-GIGLFISILSMIAAAVLELIR 329 (449)
Q Consensus 254 ~~~~g~~g~~i~---~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i-~iG~~l~ai~~l~l~~~~~~~ 329 (449)
..+-.+..++-- ..+-..++++.. .+.+.++.++.+| .+.++++ .++.++.+++++...+++...
T Consensus 292 ~~~~~~~~y~~gvr~G~~~l~~~s~~~----~i~s~~l~~l~~~-------~g~~k~~~~~s~~~~~~~l~~~~~i~~~~ 360 (477)
T TIGR01301 292 GSVNQGAKYDDGVRAGAFGLMLNSVVL----GITSIGMEKLCRG-------WGAGKRLWGIVNIILAICLAATVLVTYVA 360 (477)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------hccchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 110000000000 000111122221 2334334344444 3332233 688888888888887765320
Q ss_pred HHHHhhcCCCCC-CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh--hhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013109 330 LRMVREHNYYDL-PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD--AMRSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 330 ~~~~~~~~~~~~-~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~--~~~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
.+.....+-.+. ++..-..+..+....+.|+........=++++.+..|+ +..|.++|+.|++..+.+.+.+...+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 361 KNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred hccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 01011135667777888999888887778889999995 455999999999999999999887777
Q ss_pred hhcc
Q 013109 407 VTSI 410 (449)
Q Consensus 407 ~~~~ 410 (449)
+.+.
T Consensus 441 ~~~~ 444 (477)
T TIGR01301 441 WDQL 444 (477)
T ss_pred HHHH
Confidence 5443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-07 Score=94.90 Aligned_cols=272 Identities=12% Similarity=0.133 Sum_probs=165.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhh-
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG- 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~- 109 (449)
.......++..++|+|-+.......+++.|..+||+ |.++.++.|.+.-+|..++..+.|.+.+.++..-..-
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 455566677788999999999999999999999987 9999999999999999999999998887766432222
Q ss_pred H---hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCcc
Q 013109 110 I---PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDF 186 (449)
Q Consensus 110 i---~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 186 (449)
+ +.+.+++.++..+-.+++..+.++.. ..++.
T Consensus 161 ~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~---------------------------------------------~~~~~ 195 (403)
T PF03209_consen 161 IQGVALIALLLNLIALWGQEPRRSRRAAAA---------------------------------------------ERPRP 195 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCC---------------------------------------------CCCCc
Confidence 2 22333333333322222221111000 00001
Q ss_pred chhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc
Q 013109 187 SFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266 (449)
Q Consensus 187 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~ 266 (449)
.+.+..... . . + .+.+++ ...+++....|++-+... + .+|..=|.+++
T Consensus 196 ~f~~a~~~~--------~-------~-~--~~a~~f--~~fl~l~t~a~~~QD~iL-----------E-Pygg~Vfgmsv 243 (403)
T PF03209_consen 196 PFREAWRQV--------W-------A-S--PQARRF--FVFLFLGTLAFFMQDVIL-----------E-PYGGEVFGMSV 243 (403)
T ss_pred cHHHHHHHH--------H-------h-C--CChhHH--HHHHHHHHHHHHhhHHHc-----------C-CchhHHcCCCH
Confidence 111111000 0 0 0 112221 122223333322221111 1 11100111333
Q ss_pred cc---ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 013109 267 AS---LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE 343 (449)
Q Consensus 267 ~~---l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~ 343 (449)
+. ++.+..+..++...+..++.. |. .++.+...+|+...++++.........
T Consensus 244 ~eTT~Lta~~~~G~L~G~~~~g~~l~----~~------~~~~~~a~~G~~~~~~~f~lii~a~~~--------------- 298 (403)
T PF03209_consen 244 GETTRLTAFWGGGTLLGMLLAGFLLS----RR------LGKKRTAALGCLLGALAFALIILAGPL--------------- 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CC------CCchHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 32 445555666666666555422 21 344445567888888887766554322
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 344 MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 344 ~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
-+.|.+.+..+++|+|.++......+..++.++++..|..+|.|...++++..+|..+.+...+...
T Consensus 299 --~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 299 --GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred --ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999999999888888887766533
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.3e-08 Score=99.07 Aligned_cols=273 Identities=12% Similarity=0.120 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-------ccc
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-------GWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-------gw~ 105 (449)
...+.+...+..++...+.....+++.|..++++ +|.+..++.....++|.++...+.+.+.+.. +|+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 3445777777899999999999999999998654 3999999999999999977776666665322 588
Q ss_pred hhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCc
Q 013109 106 WGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKD 185 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 185 (449)
+.+++.++..+++.+......|+.+++.++..+ .
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~----------------------------------------------~ 211 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKERSVEVTEQEK----------------------------------------------K 211 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeeecccccccccc----------------------------------------------c
Confidence 887776665555554443333330000000000 0
Q ss_pred cchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeC
Q 013109 186 FSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIP 265 (449)
Q Consensus 186 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~ 265 (449)
..+.+.. + .+.+.|. ...++......+.......+.......+. ++ .+-.
T Consensus 212 ~~~~~~~---------------~------~~~~nr~---~~~l~~~~~~~~~~~~~~~~~~~y~~~~v---l~---~~~~ 261 (428)
T PF13347_consen 212 ISLRDSL---------------R------SLFRNRP---FRILLLAFFLQWLAFALMNTFLPYYFTYV---LG---NEGL 261 (428)
T ss_pred cccccch---------------h------hhcccch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHH---hc---Cchh
Confidence 0000000 0 0000111 12222333333344333333322222221 12 0000
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013109 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
.+.+..+..+..++..|++.. +.+| ++.++.+..|.++.+++.+++.+...
T Consensus 262 ~~~~~~~~~~~~~v~~~~~~~----l~~r-------~gk~~~~~~~~~~~~~~~~~~~~~~~------------------ 312 (428)
T PF13347_consen 262 ISIFMLIFFVASIVGSPLWGR----LSKR-------FGKKKVYIIGLLLAALGFLLLFFLGP------------------ 312 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHH-------ccceeehhhhHHHHHHHHHHHHHHHh------------------
Confidence 111222333333444444433 3344 45556778899998888888777631
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-------hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccCC
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNG 415 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP-------~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~~~ 415 (449)
.+.+++.+..++.|++.+..++...+...+.++ ++..|...|++++...+|..+++.+.+.+.+..+.++
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence 367888889999999999999888888888887 4557999999999999999999999998876555333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=97.36 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-------hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTK 413 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-------~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~ 413 (449)
+.+.+++..++.+++++...+...+.+.+.+| ++..|...|++++...+|..+|+.+.+.+.+..+.
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556667788999999999999999988886 44567889999999999999999999987665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-07 Score=97.60 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.++.++.++++..+..... ...+++.+++..++.|+++++..+....++.+..|++.
T Consensus 278 ~g~r~~l~~~~~~~~v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~ 341 (418)
T TIGR00889 278 FGIKKVMLLSLVAWALRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI 341 (418)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 56667788888888887765554210 01234446667789999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSL-TTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~-~~~~lG~~lg~~l~~~~~~ 409 (449)
||+++|+.+ ...++|+.+|+.+.+.+.+
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999997 6789999999999987754
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=91.01 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC---
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--- 378 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP--- 378 (449)
++.++.+.++.++.+++.+.+...... ...+.+.+++..++.+++.+...+...+.+.+.+|
T Consensus 293 ~gkk~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 293 LSRRILWAGASIFPVLSCGVLLLMGLA---------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcc---------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 555566667777666666554332100 01245556677788999999999998999998877
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 379 ----DAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 379 ----~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
++..|.+.|.+.+..-+|..+|+.+.+.+.+..+
T Consensus 358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5557779999999999999999999997765544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-05 Score=84.16 Aligned_cols=66 Identities=18% Similarity=0.041 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
+.|.+.+..++.|+..+-..+..-++..+.+|+++.+...|++.+..-..+.+|+.+++.+.+.++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555788999999999999999999999999999999999999999999999999986543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-06 Score=81.72 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~i 110 (449)
+...++.+-++.|.|-+.......++|.+.||++ -+..+++|..+.++|+.+++.+...+.++. +||....+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5678899999999999999999999999999976 588999999999999999999999999887 79977665
Q ss_pred hHHHHHHHH
Q 013109 111 PAVAMAIAV 119 (449)
Q Consensus 111 ~~~~~~l~~ 119 (449)
=+..-++++
T Consensus 171 WAl~allAl 179 (395)
T COG2807 171 WALLALLAL 179 (395)
T ss_pred HHHHHHHHH
Confidence 443333333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-06 Score=86.09 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhee------cccccc
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI------QDNEGW 104 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L------~~~~gw 104 (449)
.+.+.+++-+++.|+-++...|+...+++.+|.+++ |+..+++|+...++|.++|.++...+ ....||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 366888999999999999999999999999999887 99999999999999999999999885 345799
Q ss_pred chhhhHhHHHHHHHHHHH
Q 013109 105 GWGFGIPAVAMAIAVVSF 122 (449)
Q Consensus 105 ~~iF~i~~~~~~l~~i~~ 122 (449)
||.|+|.+++.++..++.
T Consensus 206 ~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVV 223 (495)
T ss_pred eeehhHHHHHHHHHHheE
Confidence 999999997665555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-05 Score=82.01 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-------ccc
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-------GWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-------gw~ 105 (449)
...+++.-.+..++...+...-.++..++.++.+ +|.+..++.....++|.++++.+...+.+.. +|+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 3445555566788888888899999999987654 4999999999999999988877765444332 466
Q ss_pred hhhhHhHHHHHHHH
Q 013109 106 WGFGIPAVAMAIAV 119 (449)
Q Consensus 106 ~iF~i~~~~~~l~~ 119 (449)
....+.++..+++.
T Consensus 184 ~~~~i~~ii~~i~~ 197 (460)
T PRK11462 184 GGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444333333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-05 Score=81.22 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=75.9
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013109 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
..+|+.+| ++..+.+.++.++.++=..+.+..+. +....+..+.+..+++|+.-++......
T Consensus 262 ~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~~---------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 262 FSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFSD---------------PWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhcC---------------CcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455555 78888888998888777777766410 0001122234445689999999999999
Q ss_pred HHHhhhcChhhHHHHHHHHHHH-HHHHHHHHhHHHhhhhc
Q 013109 371 EFFYEQAPDAMRSLCSALSLTT-VALGNYLSSLLVTIVTS 409 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~-~~lG~~lg~~l~~~~~~ 409 (449)
.++.+.+|++.|+++++++... .++|..+|+.+.+.+.+
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~ 363 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD 363 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 68999999999987754
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-06 Score=90.95 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=84.7
Q ss_pred CCCCCCCCCcccc-CCCchH-HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHh
Q 013109 15 PVCHGPRGEETCQ-VTDAQS-ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS 92 (449)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~-~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp 92 (449)
+.|+.......|. .++..+ .+|+++.++.|+|+..+.|...+++=|...+++ -...+++++.+.-+|+++|.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGf 290 (735)
T KOG3626|consen 217 NLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGF 290 (735)
T ss_pred cccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHH
Confidence 5666554444443 444334 478899999999999999999999988887776 67899999999999999999
Q ss_pred hhhheecccc-------------------ccchhhhHhHHHHHHHHHHHHhcccccc
Q 013109 93 SVLVWIQDNE-------------------GWGWGFGIPAVAMAIAVVSFFSGTRLFR 130 (449)
Q Consensus 93 ~lgg~L~~~~-------------------gw~~iF~i~~~~~~l~~i~~~~~~~~~~ 130 (449)
++|+++.+.| .|+..|++++.+.++..+-+++.-|.++
T Consensus 291 llgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 291 LLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 9999875422 4889999998877777766665554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=80.56 Aligned_cols=279 Identities=10% Similarity=0.123 Sum_probs=161.2
Q ss_pred ccCCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccc
Q 013109 26 CQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWG 105 (449)
Q Consensus 26 ~~~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~ 105 (449)
|.....++|....++++.|+|+-......+.+...+|..+| .+.+|+++..+.-+|..+-..+.++|.++.+-
T Consensus 129 ~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~- 201 (459)
T KOG4686|consen 129 AGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR- 201 (459)
T ss_pred hchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH-
Confidence 44456799999999999999999999999999999999887 89999999999999999999899998776541
Q ss_pred hhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCc
Q 013109 106 WGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKD 185 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 185 (449)
++=...-..+++...+-. +. ...-+..+..++....
T Consensus 202 --~~~~~ghT~LG~~l~~~~-~t-------------c~~slical~lg~~D~---------------------------- 237 (459)
T KOG4686|consen 202 --MFPGVGHTLLGLWLCFEV-KT-------------CKQSLICALSLGLSDD---------------------------- 237 (459)
T ss_pred --hcccchHHHHHHHHHHHH-HH-------------HHHHHHHHHHhhhhhh----------------------------
Confidence 110111112222221110 00 0000111111100000
Q ss_pred cchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhh---HHHHHHhhccchhHHHHHhhhccCCCCCCc
Q 013109 186 FSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATG---IIFSAVYSQMSSLFVLQGERMDTHVGNSSF 262 (449)
Q Consensus 186 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~---~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~ 262 (449)
++..+.+...+.....| +. .|++.+ ..|+|... +.|+.....+.+ +-+...+.++|
T Consensus 238 -----rAerilh~e~g~~Ge~p----kL---tdv~~f--~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~rfG---- 296 (459)
T KOG4686|consen 238 -----RAERILHLEEGFLGEEP----KL---TDVNTF--YPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKRFG---- 296 (459)
T ss_pred -----HHHHHHhhhcCcccCCc----cc---cccccc--CccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHhhC----
Confidence 00000000000000001 11 222211 23444333 333333333322 22233344556
Q ss_pred eeCcccccchhHHHHHHH---HHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013109 263 KIPPASLSIFDTLSVIFW---VPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYY 339 (449)
Q Consensus 263 ~i~~~~l~~ln~~~ili~---~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~ 339 (449)
+++..-+++++..-.+. .|+...+ .+|++++ .+.+..+.+....+=.++.+.+
T Consensus 297 -lS~~~a~~i~s~vy~Isav~spvfg~i----~Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft~------------- 352 (459)
T KOG4686|consen 297 -LSAVSAGNILSTVYGISAVLSPVFGAI----SDKYGFN------LWWVASACILTLLGHSGLFFTF------------- 352 (459)
T ss_pred -CChhhccchhhhhhhhhhhhhhhHHHh----Hhhhcce------ehhHHHHHHHHHHHhhhHHhhh-------------
Confidence 44444566666555443 3444443 4444332 2334444444444444444321
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 340 DLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 340 ~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++ ...+.+.|++..+..-..+-.+...+|+++.|++-|.....+++|-++.+.+.+++.+
T Consensus 353 ------lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 353 ------LSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred ------ccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 233 3456788999999888888899999999999999999999999999999999988764
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-05 Score=81.13 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013109 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+-..+.+.+++.+++.|++.+....+...+++|.++++. |..+.++ +.....++.++|++++++.. +|||.
T Consensus 166 a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 166 AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 444688999999999999999999999999999999987 9999999 99999999999999999987 99999
Q ss_pred hhHhHHHHHHHHHH
Q 013109 108 FGIPAVAMAIAVVS 121 (449)
Q Consensus 108 F~i~~~~~~l~~i~ 121 (449)
+++.....++.++.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 99866544444433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7e-05 Score=77.91 Aligned_cols=304 Identities=10% Similarity=0.059 Sum_probs=162.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhh--eeccccccchhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV--WIQDNEGWGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg--~L~~~~gw~~iF 108 (449)
.+...+.+++++.|+..|+......-++.+..|++. |+..-...-+..++|.++|..++- .+.+.-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 577899999999999999999999999999999887 999999999999999999966552 555666799999
Q ss_pred hHhHHHHHHHHHHHHhccccccccCC----CCCchhHHHHHHHHHHHhccCcCCCCc-cchhhcccccccccCCcccCCC
Q 013109 109 GIPAVAMAIAVVSFFSGTRLFRNQKP----GGSPLTRICQVVAASIRKHKVELPADK-SLLYETADAESNITGSRKLDHT 183 (449)
Q Consensus 109 ~i~~~~~~l~~i~~~~~~~~~~~~~~----~~~~~~~~~~vl~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~l~~~ 183 (449)
..+++..++.++.+.+. +|.|+ +.++.....+.+ +. .+..+. ....+.+
T Consensus 188 ~~~~i~~~~~l~~l~~~----PESPk~Ll~~k~~~~~A~~sl----~~---y~G~~~~~~~~e~~--------------- 241 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPFL----PESPKYLLIKKGDEEEARKAL----KF---YRGKEDVEAEIEEM--------------- 241 (485)
T ss_pred HHHHHHHHHHHHHHhcC----CCCcchHHHHcCCHHHHHHHH----HH---HhCCCcchhHHHHH---------------
Confidence 88876555555444332 22111 011111111111 00 000000 0000000
Q ss_pred CccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchh----HHHHHhhhccCCCC
Q 013109 184 KDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSL----FVLQGERMDTHVGN 259 (449)
Q Consensus 184 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~----~~~~~~~~~~~~g~ 259 (449)
.+...... .. ..+..+..++.+.+.. |.. +.+... .....|+... ++......+.
T Consensus 242 ---~~e~~~~~---~~-------~~~~~sl~~~~~~~~l-R~~-~~i~~~--v~~~qq~sGi~ai~~Yst~i~~~a---- 300 (485)
T KOG0569|consen 242 ---LREIEEEE---LE-------KKKQISLRQLLKNPTL-RRP-LLIGIV--VSFAQQFSGINAIFFYSTSIFKTA---- 300 (485)
T ss_pred ---HHHHHHhc---cc-------cccCCcHHHHhcCcch-hHH-HHHHHH--HHHHHHhcCcceeHHHHHHHHHHc----
Confidence 00000000 00 0000000111111111 111 111111 1122233221 1222122222
Q ss_pred CCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013109 260 SSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYY 339 (449)
Q Consensus 260 ~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~ 339 (449)
|++.+.....++....+-+...+.+.+ +.+|+ +++..+..++.++++..+.+...........
T Consensus 301 -G~~~~~a~~an~~~g~v~~~~t~~~~~---lid~~-------gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------ 363 (485)
T KOG0569|consen 301 -GFTPEEAQYANLGIGIVNLLSTLVSPF---LIDRL-------GRRPLLLISLSLMAVALLLMSIALFLSNSFG------ 363 (485)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Confidence 344444445555555555555554443 35554 4445777888888777777666544311100
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH-hhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 340 DLPEMPMSIMWQVPQYFLIGCAEVFT-FIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 340 ~~~~~~~s~~~li~~~il~glge~l~-~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++-.+..+...++..++-.+. .|..+-+..+.+|++.|+.+++.-...+-+.+.+-+...-.+.+
T Consensus 364 -----~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~ 429 (485)
T KOG0569|consen 364 -----SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN 429 (485)
T ss_pred -----hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112234444444444333 47778899999999999999999999999988887777665554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-05 Score=81.30 Aligned_cols=309 Identities=14% Similarity=0.101 Sum_probs=161.3
Q ss_pred hHHHHHHHHH-HHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 32 QSATFFVALY-LIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~-l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+-+++... +.|+|.|+.......+++.+|+++ |+.+.++-.....+|.++=|.+.-++.+.+|||+.+++
T Consensus 133 ~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~ 205 (509)
T KOG2504|consen 133 SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLI 205 (509)
T ss_pred hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHH
Confidence 4555555554 489999999999999999888643 99999999999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHhccccccccCCCC-CchhHHHHHHHHHHHhccCcCCCCccc-hhhcccccccccCCcccCCCCccch
Q 013109 111 PAVAMAIAVVSFFSGTRLFRNQKPGG-SPLTRICQVVAASIRKHKVELPADKSL-LYETADAESNITGSRKLDHTKDFSF 188 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~vl~~~~~~~~l~~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~ 188 (449)
-+...+-..+.-...++.....++.+ ++... .....+... ..+. +.++...+....+..+
T Consensus 206 ~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---- 267 (509)
T KOG2504|consen 206 FGGISLNVLVAGALLRPLSPPKKPNEEKDLRN-------------SAASVESTPKPVEL-RISERDSGLKKLSLSN---- 267 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-------------cccccccccccccc-ccccCCCCCCcccccc----
Confidence 66544333333333333211111110 00000 000000000 0000 0000000000000000
Q ss_pred hhhhhhhhccccccccCCCCccccchh---HHHHHHHHHH---hhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCc
Q 013109 189 FDKAAVEIQSDNIKESVNPWRLCTVTQ---VEELKAIVRL---LPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSF 262 (449)
Q Consensus 189 l~~a~~~~~~~~~~~~~~~~~~~~~~~---v~~~k~~~~~---~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~ 262 (449)
.....- ....++....+. ..|.+ +++- +.+.+...+..+.+. ..+...+.+.+ ..+
T Consensus 268 --~~~~~~-------~~~~~~~~~~~~~~~~~d~~-ll~~~~fl~~~~~~~~~~~g~~---~p~~~l~~~~~-~~g---- 329 (509)
T KOG2504|consen 268 --LATLKR-------GPDKWRNSPLQAFLSMLDLS-LLKDPKFLLLALSNLFAYLGFN---VPFVYLPSYAK-SLG---- 329 (509)
T ss_pred --hhhhhh-------CCccccccchhhhhhhhhHH-HHcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcC----
Confidence 000000 000000000000 01122 1121 111111111111111 11222222333 223
Q ss_pred eeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 013109 263 KIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLP 342 (449)
Q Consensus 263 ~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~ 342 (449)
+..-....++-...+.+.+..++..-..+++. .+......+++++.+++...+.+.
T Consensus 330 ------~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~-~~~~~~~~~~ll~~gl~~~~~p~~----------------- 385 (509)
T KOG2504|consen 330 ------LSSNDAAFLLSIIGVSDIIGRIILGLLADKPG-IRALVLFLLTLLIAGLARLFLPFA----------------- 385 (509)
T ss_pred ------CChhhhHHHHHHHHHhhhhhhhhhhhhcCccc-cchHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 11111122222222222222222222333311 234555566666666666555543
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 343 EMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 343 ~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
.+++.++..-++.|+..+........++.+.++.+.-+.+.|+..+.++++..+|+.+.+.+.+.
T Consensus 386 ---~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 386 ---TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI 450 (509)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence 56777888889999999999999889999999999999999999999999999999999866543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-05 Score=80.25 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=80.8
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013109 289 VPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIG 368 (449)
Q Consensus 289 ~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~ 368 (449)
.++..++.+| +++++.+.++.++.+++++.+... .++|+++...+++|+++++..|+
T Consensus 63 ~~~~G~l~dr---~g~k~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 63 GIFGGAIADR---FGAKPMIVTGMLMRAAGFATMAIA--------------------HEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhhhhHHHHH---hCchHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 666677888999888888877653 46778888889999999999999
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 369 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 369 ~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..+.+.+.+|+++|++++|+.....++|..+|+.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888664
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.3e-05 Score=75.95 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=56.3
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc
Q 013109 29 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD 100 (449)
Q Consensus 29 ~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~ 100 (449)
....+..|++++++++.|-|..+...++++++..++++ -+.-+++.-....+|+++||.+++++..
T Consensus 100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44678889999999999999999999999999999876 3445666666779999999999998876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.2e-05 Score=77.38 Aligned_cols=113 Identities=7% Similarity=0.004 Sum_probs=83.8
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+..++++-++.=.++ -.+..++.+| +++++-+.++.+++++=.+.+++. ++.
T Consensus 261 ~G~l~s~~v~~E~~~-m~~~p~li~r-------ig~k~~Lllag~i~~iRi~~~~~~--------------------~~~ 312 (412)
T PF01306_consen 261 YGYLWSVQVFLEALM-MFFSPWLINR-------IGAKNLLLLAGVIMAIRIIGSGFA--------------------TNP 312 (412)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHT----------------------SH
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHh-------cChHhHHHHHHHHHHHHHHHHhhh--------------------cch
Confidence 455555554443333 3333334555 678888888888888777777664 677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHH-HHHHHHHHHHHHhHHHhhhhc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl-~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|++++.-.+.++-..+.-....-++.++.|++..++...+ +++..++|..+.+.+.+.+.+
T Consensus 313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd 374 (412)
T PF01306_consen 313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD 374 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh
Confidence 8889999999999999999999999999999999888877 579999999999998887754
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.9e-05 Score=77.56 Aligned_cols=87 Identities=17% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+++.+. .+++.++...++.|++++...+....++.+..|+++
T Consensus 85 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 144 (434)
T PRK11663 85 SNARYFMGIGLIATGIINILFGFS--------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE 144 (434)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence 566677888888888888766654 456667777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+++|+++...++|..+++.+.+.+.
T Consensus 145 rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 145 RGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887664
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-07 Score=97.97 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc----------
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN---------- 101 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~---------- 101 (449)
-...|+++-++.|+|+..+.+...+++=|..++++ -...+++++.+..+|+++|.++|+...+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46788999999999999999999999999998887 67889999999999999999999977432
Q ss_pred -----------c-ccchhhhHhHHHHHHHHHHHHhccccccc
Q 013109 102 -----------E-GWGWGFGIPAVAMAIAVVSFFSGTRLFRN 131 (449)
Q Consensus 102 -----------~-gw~~iF~i~~~~~~l~~i~~~~~~~~~~~ 131 (449)
+ .|+..|++.+...++..+-+.+..|++++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 1 39999998887666665555554454443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.1e-05 Score=77.47 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .++++++...++.|++++...|....++.+..|+++
T Consensus 70 ~G~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (412)
T TIGR02332 70 IGARRWIAGIMVLWGIASTATMFA--------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF 129 (412)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence 556677888998988888887764 467788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+++|+++....+|..+++.+.+.+.
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.7e-06 Score=69.51 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+.+.+.+.+++.+...|...+++.|.+|+++ |++++++.....++|..+||.+++++.+..+|++.|++.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 45667888899999999999999999999999887 999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 013109 112 AVAMAIAVVSF 122 (449)
Q Consensus 112 ~~~~~l~~i~~ 122 (449)
....+++.+..
T Consensus 124 ~~~~~~~~~~~ 134 (141)
T TIGR00880 124 AILALAAFILL 134 (141)
T ss_pred HHHHHHHHHHH
Confidence 76555554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.7e-05 Score=76.03 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.+|.++++++.+++...... .++++++...++.|+|.++..+..+.++.+..|++.
T Consensus 65 ~G~r~~~~~g~~l~~~g~~l~~~~~~~-----------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 127 (410)
T TIGR00885 65 LSYKAGILLGLFLYALGAFLFWPAAEI-----------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST 127 (410)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHhh-----------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH
Confidence 666778999999999998776543211 467778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++.+++.+..+++|..+|+.+...+.
T Consensus 128 ~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 128 ATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988664
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0005 Score=69.53 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+++.+-+.+.+..-+.+.+..-+..++.+| ++.++.+.+|+++..+.++...+.+. +..+
T Consensus 285 ls~~~lll~g~~~~vvA~lg~ii~g~Ld~r---fg~k~vl~~~lvi~~~~~~~~~~~~~-----------------~~~f 344 (438)
T COG2270 285 LSSTELLLIGIALSVVAALGAIIAGFLDER---FGSKPVLMIGLVILSIAALYLIFLEG-----------------ELDF 344 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCceeehHHHHHHHHHHHHHHHccc-----------------cHHH
Confidence 445554444444433333322223333333 67777888888888777777766531 1233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
....++.|...+-+....=++..+.+|+++.++..|++++....++.+|+.+++.+.+.++
T Consensus 345 ---~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 345 ---WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ---HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 3334677899999999999999999999999999999999999999999999999987755
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00034 Score=72.46 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=70.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+...+.+.+++.|++.|... ....++..++|+++ |+++.+++..+.++|.++|+++++++. .+||++-+.+
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~L 184 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Confidence 367889999999999999999 99999999999887 999999999999999999999999954 6899986665
Q ss_pred hH---HHHHHHHHH
Q 013109 111 PA---VAMAIAVVS 121 (449)
Q Consensus 111 ~~---~~~~l~~i~ 121 (449)
+. ....+++++
T Consensus 185 n~Isl~s~~~a~~~ 198 (511)
T TIGR00806 185 NIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 53 444444444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=73.73 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=75.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+.+. .+++.++...++.|++++...+....++.+..|+++
T Consensus 74 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 74 YGRRLPMVTSIVLFSAGTLACGFA--------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 555667888888888887776654 467778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.++++.+...++|..+++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776643
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0002 Score=73.27 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=73.8
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013109 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
+..++.+| +++++.+.++.++.+++++.+.+. .+++..+....+.+.+.....|...
T Consensus 62 ~~G~l~Dr---~g~k~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 62 GFGILADK---FDKKRYMLLAITAFASGFIAIPLV--------------------NNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred HHHHHHhh---cCcchhHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 556667788888888888777664 2445555556677778888888888
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 371 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
....+..|++.|+++.|+.+...++|..+|+.+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888664
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.8e-05 Score=78.08 Aligned_cols=266 Identities=14% Similarity=0.080 Sum_probs=151.2
Q ss_pred ccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHHHHHHHhcc
Q 013109 47 TGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT 126 (449)
Q Consensus 47 ~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~~i~~~~~~ 126 (449)
.+.+.....+.++|...+|+ |.+.+++.......+..+||.+++++.+.+|+-..|+++....+++.+......
T Consensus 126 ~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l 199 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFL 199 (463)
T ss_pred hhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 34466777888999998886 999999999999999999999999999999999999999887777776544433
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCC
Q 013109 127 RLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVN 206 (449)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~~~~ 206 (449)
++-..+ ++.. .. . ....++.. .+. |-...... .
T Consensus 200 ~Esl~~-~~~~-~~-------------~-~~~~~~~~----------------~~~-----~~~~~~~~--~-------- 232 (463)
T KOG2816|consen 200 PESLQE-KERS-DA-------------T-LRELTPGS----------------LDS-----SHVADAFQ--S-------- 232 (463)
T ss_pred ccccCc-cccc-cc-------------c-ccccCCCc----------------ccc-----hhhhhhhh--h--------
Confidence 321111 1100 00 0 00000000 000 00000000 0
Q ss_pred CCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCce-eCcccccchhHHHHHHHHHHHh
Q 013109 207 PWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK-IPPASLSIFDTLSVIFWVPIYD 285 (449)
Q Consensus 207 ~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~-i~~~~l~~ln~~~ili~~pl~~ 285 (449)
. .. ..+.|..+.++ .......+....+..... ..+++..++ +. ...+.+..+.+..-.+ .+
T Consensus 233 ~----~~--~~~~r~~l~l~--l~~~~~~~~~~~~~~~~~---~~yl~~~f~---w~~~~~s~~~~~~~~~~~i----~~ 294 (463)
T KOG2816|consen 233 L----TK--VGPDRLLLLLL--LVAFLSSLPEAGGASDVL---LLYLKAKFG---WNKKEFSDLLSLVSILGII----SQ 294 (463)
T ss_pred h----cc--cCCCccchHHH--HHHHHHHHHHhcCceeEE---EEEEeeecC---cCHHHHHHHHHHHHHHHHH----HH
Confidence 0 00 11112111111 111111111111101000 011222322 10 0011122222222222 22
Q ss_pred HhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 013109 286 RFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFT 365 (449)
Q Consensus 286 ~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~ 365 (449)
.+..|++.+. ++..+.+.+|++.-.++..+.++. +.. |+.....+........
T Consensus 295 l~~~~~l~~~------l~~~~~i~lGl~~~~~~~~~~af~--------------------~~~-w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 295 LLLLPLLSSI------LGEKRLISLGLLSEFLQLLLFAFA--------------------TET-WMMFAAGVVVALAGIV 347 (463)
T ss_pred HHHHHHHHHH------HhhhhHhhHHHHHHHHHHHHHHHh--------------------ccc-hhhhHHHHHHHhhcch
Confidence 2333333332 222337889999999999999886 344 3445555667777888
Q ss_pred hhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 366 FIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 366 ~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+|...+++.+.++++.+|.++++....+++.+.+++++.+.+...
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=71.79 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+.....+...+..++...+ .+| +++++.+.++.++.+++.+++.+. .+.
T Consensus 37 ~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~~ 85 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYL----SDR-------FGRRRVLIIGLLLFALGSLLLAFA--------------------SNF 85 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHH-------S-HHHHHHHHHHHHHHHHHHHHHH--------------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHH-------cCCeeeEeehhhhhhhHHHHhhhh--------------------hhH
Confidence 3344444445555555543 344 566678889999998885555542 355
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|.++...++.|++++...+....++.+..|+++|++++++.....++|..+|+.+.+.+.
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 678889999999999999999999999999999999999999999999999999988665
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.2e-05 Score=75.66 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+++.+. .+.+.+++..++.|++.+...+....++.+..|++.
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (398)
T TIGR00895 79 IGRKRVLLWSILLFSVFTLLCALA--------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHc--------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence 555667778888888877766653 456777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++++.+....+|..+++.+.+.+.
T Consensus 139 r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 139 RGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred hchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887664
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00028 Score=72.10 Aligned_cols=88 Identities=9% Similarity=-0.027 Sum_probs=77.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..+.++.+++.+.+.+. .++++++...+++|++.+...|....++.+..|+++
T Consensus 82 ~grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 141 (394)
T PRK10213 82 TDRRYVVILFAVLLTLSCLLVSFA--------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT 141 (394)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH--------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH
Confidence 677778889999988888776653 567888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.+.++.....++|..+|+.+.+.+.+
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00021 Score=72.64 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=77.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+.+. .++++++...+++|++.+...|....++.+..|+++
T Consensus 71 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~ 130 (390)
T PRK03545 71 VERRKLLIGLFVLFIASHVLSALA--------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK 130 (390)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 677788899999999988877764 567888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++|++....++|..+|+.+.+.+.
T Consensus 131 r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 131 KAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999998887664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.001 Score=68.86 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=75.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC---
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--- 378 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP--- 378 (449)
+++++.+.+|.++.+++.+.+.+.. ..+.+..+...++.++|-+...+.-.+.+.+.++
T Consensus 299 ~gkk~~~~~~~~~~~i~~~~~~f~~------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge 360 (467)
T COG2211 299 FGKKKLFLIGLLLLAVGYLLLYFTP------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE 360 (467)
T ss_pred hchHHHHHHHHHHHHHHHHHHHhhc------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence 6667888999999999999888863 2456677777788899999988887777776655
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 013109 379 ----DAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTK 413 (449)
Q Consensus 379 ----~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~ 413 (449)
++..|..-|...+.+=+|.++++.+.+......+.
T Consensus 361 ~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 361 WKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678899999999999999999998877765543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=60.92 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+..+.++.+++.+.+... .+.+......++.+++.....+.....+.+..|+++
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLSTAMFALS--------------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 445556777777777777665543 356677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++.+++.+....+|..+++.+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 999999999999999999999888664
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00022 Score=72.32 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=74.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++++...+. .+++.++...++.|++.+...|.....+.+..|+++
T Consensus 68 ~g~k~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (381)
T PRK03633 68 IGFNRSYYLASLIFAAGCAGLGLM--------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN 127 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 455667888988888888776653 467778888999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++++.+....++|..+|+.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 128 RGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999887654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=75.91 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+......+...+..|+...+ .+| +++++.+.+|.++.+++.+++... .+
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~ 89 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWL----AKR-------FGTRRLFLISTFAFTLGSLLCGVA--------------------PN 89 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHH-------hCcHHHHHHHHHHHHHHHHHHhCc--------------------CC
Confidence 34444444445555554442 333 556667888888888888777653 46
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.++...+++|++.+...|....++.+..|+++|+++++++.....+|..+|+.+.+.+.
T Consensus 90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 7788889999999999999999999999999999999999999999999999998887664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00021 Score=71.83 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=75.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+.+. .+.+.++...++.|++.+...+....++.+..|+++
T Consensus 67 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 67 YGRRPVLLLGLFIFALSSLGLALS--------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 566677888888888888877654 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++.++.+....+|..+|+.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=72.59 Aligned_cols=109 Identities=13% Similarity=0.016 Sum_probs=84.6
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+.....+...+..++...+ .+| .++++.+.++.++.+++...+.+. .++
T Consensus 34 ~~~~~~~~~~~~~~~~g~l----~d~-------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~ 82 (399)
T TIGR00893 34 VFSAFSWGYVVGQFPGGWL----LDR-------FGARKTLAVFIVIWGVFTGLQAFA--------------------GAY 82 (399)
T ss_pred HHHHHHHHHHHHHHhHHHH----HHh-------cCcceeeHHHHHHHHHHHHHHHHH--------------------cCH
Confidence 4444445555555555543 333 344456677888878877777654 467
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.++...++.|++.+...+....++.+..|+++|+.++++.+...++|..+++.+.+.+.
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999998887654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0016 Score=69.14 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~ 109 (449)
.+...+++++++.|+|.|+..-....++++..|++. |+...+.+...+++|.++|..++....+. ++||..++
T Consensus 140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG 213 (513)
T ss_pred hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHH
Confidence 377889999999999999999999999999998876 99999999999999999996665555433 48998887
Q ss_pred HhHHH
Q 013109 110 IPAVA 114 (449)
Q Consensus 110 i~~~~ 114 (449)
+..+.
T Consensus 214 ~~~i~ 218 (513)
T KOG0254|consen 214 LALIP 218 (513)
T ss_pred HHHHH
Confidence 65543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00032 Score=73.16 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=73.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..+.++.+++.+.+.+. .+.+.++...+++|++.+...|.....+.+..|++.
T Consensus 72 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 131 (471)
T PRK10504 72 VGVRNIFFTAIVLFTLGSLFCALS--------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ 131 (471)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH
Confidence 555566777878877777765542 466778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++.+.|+.+...++|..+|+.+.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 132 YMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 9999999999999999999998876653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00033 Score=69.44 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=84.9
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+..+..+...+..|+... +.+| +++++.+.++.++.+++.....+.... ...+.
T Consensus 39 ~~~~~~~~~~i~~~~~G~--------l~dr---~g~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 92 (365)
T TIGR00900 39 AALAGMLPYVVLSPIAGA--------LADR---YDRKKVMIGADLIRAVLVAVLPFVALL---------------GGLNI 92 (365)
T ss_pred HHHHHHHHHHHHHHhhhH--------HHHh---hchhHHHHHHHHHHHHHHHHHHHHHHc---------------CCCcH
Confidence 334444444445555444 3333 455567777877777777666654311 01367
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++....++.|++.+...|...+++.+..|+++|+++.+..+...++|..+|+.+.+.+.
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999999999999999999999999888664
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.9e-05 Score=79.03 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=92.0
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
.++..-.+..++..|+.+.+ .+| .++.+.|++|..+-+++.+..++. ..
T Consensus 72 ll~~vf~v~~~i~sPl~gyL--------adr---yNR~~v~~vG~~iW~~Av~~~~fs--------------------~~ 120 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYL--------ADR---YNRKRVIAVGIFIWTLAVFASGFS--------------------NH 120 (493)
T ss_pred chhHHHHHHHHHHHHHHHHH--------Hhh---cCcceEEeeHHHHHHHHHHHHHHH--------------------HH
Confidence 35555566666777887773 233 566678999999999999988875 35
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+|.+.+.--+.|+||....|...+++.+..|...|+++.++++++..+|+.+|......+.+.
T Consensus 121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 677888889999999999999999999999999999999999999999999997766655543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=74.46 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.....+.+++..+|.+......-++..+....|.. +|+...++.+....+|.++|..++|++.++.++++.|.+
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 3555667788889999999999999999999865542 278889999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013109 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
....-.+..+
T Consensus 160 ~~~~~~l~~~ 169 (433)
T PF03092_consen 160 SAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHH
Confidence 7655444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00076 Score=68.67 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+.+. .++++++...++.|++.+...|.....+.+..|++.
T Consensus 77 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 136 (406)
T PRK11551 77 IGRKRILIVSVALFGLFSLATAQA--------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL 136 (406)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH
Confidence 566677888888877777665543 467778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+.++++.+....+|..+++.+...+
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00042 Score=71.07 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=74.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .+.+.++...++.|+|++...+....++.+..|++.
T Consensus 80 ~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 80 FGRKPLMMWSIVAYSVGTGLSGLA--------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 566678888999988888877764 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+++++++....++|..+++.+...+
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998776654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=71.42 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=76.8
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013109 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
+..++.+| +++++.+.++.++.+++.+.+....... .....++++++...+++|+|++...+...
T Consensus 70 ~~G~l~Dr---~g~r~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 134 (399)
T PRK05122 70 HAGRYADT---LGPKKAVVFGLCGCALSGLLYLLAGLLA------------AWPVLSLLLLLLGRLLLGIGESLAGTGSI 134 (399)
T ss_pred hhHhHHhc---cCCcchHHHHHHHHHHHHHHHHHhhhhh------------ccchhHHHHHHHHHHHHHhhHHhhcchHH
Confidence 34444444 6677788888887777766554332110 00012466778888999999999999999
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 371 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..+.+..|+++|+++++++.....+|..+|+.+.+.+.
T Consensus 135 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 135 LWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887664
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00036 Score=69.76 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc-h
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM-S 347 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-s 347 (449)
+.....+...+..++...+ .+| .++++.+.++.++.+++.+++.+. . +
T Consensus 42 ~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~~~~~~~~~~i~~~~~~~~--------------------~~~ 90 (366)
T TIGR00886 42 LVAVPVLAGAVLRIILGFL----VDK-------FGPRYTTTLSLLLLAIPCLWAGLA--------------------VQS 90 (366)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHH-------hCchHHHHHHHHHHHHHHHHHHHH--------------------hhh
Confidence 3444444445555555543 334 455567888999999998877764 3 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.++...+++|++.+.. ++...++.+..|+++|+.+++++....++|..+++.+...+.
T Consensus 91 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 677788889999997654 556789999999999999999999888888888777765443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00054 Score=71.14 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=73.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+++..... ..+++.++...+++|+|.+...+..+.++.+..|+++
T Consensus 88 ~G~r~~l~~g~~~~~~~~~l~~~~~~-----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~ 150 (438)
T PRK10133 88 LSYKAGIITGLFLYALGAALFWPAAE-----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHh-----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence 67778899999999999876532211 1567788899999999999999999999998877877
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+...+++.+...++|..+|+.+...+
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999998887654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=76.13 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=72.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++....+..... ...+++.++...+++|++++...|....++.+..|+++
T Consensus 91 ~g~r~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 155 (467)
T PRK09556 91 KNTKQFLPFLLILSAICMLGFGASLGS---------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK 155 (467)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHhc---------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc
Confidence 666777888888777777665543111 12467788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
||+++|+++...++|..+++.+...
T Consensus 156 rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 156 RGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred eeeeEEeeecccchhhhHHHHHHHH
Confidence 9999999999999999998776643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00057 Score=72.07 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
|..+...+......+...++ .+| +++++.+.+|.++.+++.+++... .+
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l----~D~-------~Grk~~l~~~~~~~~~~~~~~~~a--------------------~~ 93 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGAL----GDR-------IGFKRLLMLGGTLFGLASLAAAFS--------------------PT 93 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHH-------hccHHHHHHHHHHHHHHHHHHHHc--------------------CC
Confidence 34444444444555554443 333 566678889999999999887764 57
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++.++...+++|+|.+...|.....+.+.. |+++|++++|++....++|..+|+.+.+.+.+
T Consensus 94 ~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 94 ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788888999999999999998888777764 78999999999999999999999999887754
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00055 Score=75.43 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=73.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.++..+. .+++++++..++.|+|.+...|....++.+..|++.
T Consensus 229 ~GRR~~lii~lil~~i~~ll~afa--------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~ 288 (742)
T TIGR01299 229 LGRKQCLLICLSVNGFFAFFSSFV--------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK 288 (742)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 555667778888777777766654 456778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||..+++.+....+|..+++.+...+.
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987765443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.6e-05 Score=78.27 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++..++.|++.|...|...+++.+..+++. |++.+++++...++|..+||.++|++.++.||++.|++.
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~ 383 (408)
T PRK09874 310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVT 383 (408)
T ss_pred cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHH
Confidence 45667778888999999999999999988888776 899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 013109 112 AVAMAIAVVSFFS 124 (449)
Q Consensus 112 ~~~~~l~~i~~~~ 124 (449)
+...+++.+..+.
T Consensus 384 ~~~~l~~~~~~~~ 396 (408)
T PRK09874 384 AGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 8766666655433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00046 Score=70.08 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=70.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+........ ......++++++...+++|+|+....|...+.+.+..|+++
T Consensus 78 ~g~r~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (392)
T PRK12382 78 YGAKRSALQGMLACGLAGLAYLLAAIL------------PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH 145 (392)
T ss_pred hcchHHHHHHHHHHHHHHHHHHhhhcc------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 556667777777666654432221000 00001356778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++++.+....++|..+|+.+.+.+.
T Consensus 146 r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 146 SGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887664
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=68.32 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+... .+.+.+....++.|++.+...+....+..+..|+++
T Consensus 61 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 120 (352)
T cd06174 61 FGRRRVLLLGLLLFALGSLLLAFA--------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120 (352)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc
Confidence 445557888888888888877664 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+..++..+...++|..+++.+.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 121 RGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=70.58 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=71.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++++.+...... ...+++++....++.|++.++..+.....+.+..|+++
T Consensus 79 ~g~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 143 (417)
T PRK10489 79 YDRKKLILLARGTCGLGFIGLALNAFL---------------PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN 143 (417)
T ss_pred cCCceEEEehHHHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH
Confidence 455556667777777776655432110 01356777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++++.++++...++|..+|+.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 144 LMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 999999999999999999999887654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.9e-05 Score=78.43 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccc------cccc
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDN------EGWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~------~gw~ 105 (449)
.+.+++...+.|++.+...|....++.|.+|+++ |++++++.+ ...++|..+||+++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4567778889999999999999999999999876 999999997 56789999999999999887 4699
Q ss_pred hhhhHhHHHHHHHHHHHH
Q 013109 106 WGFGIPAVAMAIAVVSFF 123 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~ 123 (449)
+.|++.+...+++.+.+.
T Consensus 382 ~~f~~~~~~~~i~~~l~~ 399 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFM 399 (418)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999987765555554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=67.87 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013109 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
+..++.+| +++++.+.+|.++.+++.+.+.+.... ..+++.++...++.|++++...|...
T Consensus 82 ~~G~l~Dr---~g~k~~l~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~l~gi~~g~~~~~~~ 142 (452)
T PRK11273 82 IMGSVSDR---SNPRVFLPAGLILAAAVMLFMGFVPWA----------------TSSIAVMFVLLFLCGWFQGMGWPPCG 142 (452)
T ss_pred hhhhhhhc---cCCchhHHHHHHHHHHHHHHHHhhhcc----------------cccHHHHHHHHHHHHHHHhccchHHH
Confidence 34444444 666678888888888888777664211 13566677778899999999988888
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHhH
Q 013109 371 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSL 402 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~ 402 (449)
..+.+..|+++|+.++|+++...++|..+.+.
T Consensus 143 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 143 RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 88889999999999999999999988754333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.001 Score=67.53 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
.........++..|+... +.+| .++++.+.++.++.+++.+++.+. .++
T Consensus 43 ~~s~~~~~~~~~~~~~g~--------l~dr---~g~r~~~~~~~~~~~~~~~l~~~~--------------------~~~ 91 (382)
T PRK10091 43 MISYYALGVVVGAPIIAL--------FSSR---YSLKHILLFLVALCVIGNAMFTLS--------------------SSY 91 (382)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHcc---CccHHHHHHHHHHHHHHHHHHHHh--------------------CcH
Confidence 334444444555555444 3333 566678889999999888877764 567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++....++.|++++...+.....+.+..|+++|+.+++++.....+|..+|+.+.+.+.
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 888888999999999999988889999999999999999999999999999888876554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=67.65 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.+.-++..+++.+. .+++.+.+..++.|++|+... ....++++-.|+++
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa--------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE 147 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLG--------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR 147 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH
Confidence 566778888888888888877775 467889999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++|+++....+|..+++.+.+.+.
T Consensus 148 R~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 148 YQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=68.38 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=70.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+.+..... ...+.+.+....++.|++++...++....+.+..|+++
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~ 151 (438)
T TIGR00712 88 SNPRVFLPAGLILSAAVMLLMGFVPW----------------ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE 151 (438)
T ss_pred cCCceehHHHHHHHHHHHHHHhcccc----------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc
Confidence 55566777888888888776654310 01345556677788999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
||.++|+++...++|..+++.+.+.
T Consensus 152 rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 152 RGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred chhHHHHHHHHHHhHhHHHHHHHHH
Confidence 9999999999999999998877654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=69.51 Aligned_cols=87 Identities=13% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+.+. .++++++...++.|++.+...+....++.+..|+++
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 141 (496)
T PRK03893 82 YGRRLAMVISIVLFSVGTLACGFA--------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL 141 (496)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 455567788888888888877764 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++++++...++|..+++.+.+.+.
T Consensus 142 r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 142 RNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00037 Score=71.65 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.++...... ..+.+.++...++.|+|.+...+....++.+..|+++
T Consensus 98 ~grr~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 160 (481)
T TIGR00879 98 FGRKKSLLIIALLFVIGAILMGLAAF-----------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL 160 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc-----------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh
Confidence 66677788888888888877765421 2455678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013109 382 RSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
|+.++++++...++|..+++.+.
T Consensus 161 r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 161 RGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=71.45 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=94.7
Q ss_pred HHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013109 282 PIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361 (449)
Q Consensus 282 pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glg 361 (449)
.+.+.++.|+.+.+..| .+.+..|.+|++++..+-+++++. .+++.++.+-.++|+|
T Consensus 116 A~~qllvnp~~G~l~~~---iGy~ipm~~Gl~vmf~sTilFafg--------------------~sy~~l~vAR~LQgvg 172 (464)
T KOG3764|consen 116 ALVQLLVNPFFGNLIDR---IGYKIPMVAGLFVMFLSTILFAFG--------------------NSYPMLFVARSLQGVG 172 (464)
T ss_pred HHHHHHhcccchhhHHH---hccccHHHHHHHHHHHHHHHHHHc--------------------chhHHHHHHHHHhhhh
Confidence 55666666666666665 788889999999999999999987 4667899999999999
Q ss_pred HHHHhhhhHHHHhhhcChhh-HHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 013109 362 EVFTFIGQLEFFYEQAPDAM-RSLCSALSLTTVALGNYLSSLLVTIVTSISTK 413 (449)
Q Consensus 362 e~l~~p~~~~~i~~~aP~~~-~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~ 413 (449)
..++...+.+.+.+..|++. ||.++|+.....++|..+|+.+.+.+.+..++
T Consensus 173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 99999999999999999987 59999999999999999999999988765553
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=70.79 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=81.7
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013109 292 TRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 371 (449)
Q Consensus 292 ~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~ 371 (449)
+.-+.+| .+|+..+.+|+++.++.++++++. .|++.+..-.++.|.-.+.-.|+...
T Consensus 84 ~G~~sDr---~npr~fm~~gLilsai~nil~Gfs--------------------~s~~~~~~l~~lng~fQg~Gwpp~~~ 140 (448)
T COG2271 84 MGVLSDR---SNPRYFMAFGLILSAIVNILFGFS--------------------PSLFLFAVLWVLNGWFQGMGWPPCAR 140 (448)
T ss_pred hhhhccc---CCCceeehHHHHHHHHHHHHHhhh--------------------hHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 4445565 789999999999999999999885 47788888889999999999999999
Q ss_pred HHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHH
Q 013109 372 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 372 ~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
.+.+--|+++||+..++||.+.++|+.+.+.+.
T Consensus 141 ~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 141 TITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 999999999999999999999999999999988
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00078 Score=68.71 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=74.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+..|.++.+++.+...+. .+++.++...+++|+|++...+...+++.+..| ++
T Consensus 71 ~G~r~~l~~~~~l~~~~~~~~~~a--------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~ 129 (393)
T PRK09705 71 VSERRSVAISLLLIAVGALMRELY--------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR 129 (393)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHC--------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc
Confidence 567788999999999999988875 466778888999999999999999998888877 77
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++|++.....+|..+|+.+...+.
T Consensus 130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 130 TPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=4e-05 Score=79.93 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~ 109 (449)
.+.+.+++.+++.|++.+...++..+++.|.+|+++ +++.++++....++|..+||.++|++.+.. +|++.|+
T Consensus 331 ~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~ 404 (455)
T TIGR00892 331 GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY 404 (455)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence 355677888999999999999999999999998876 899999999999999999999999999877 5999999
Q ss_pred HhHHHHHHHHHHH
Q 013109 110 IPAVAMAIAVVSF 122 (449)
Q Consensus 110 i~~~~~~l~~i~~ 122 (449)
+.+...+++.+..
T Consensus 405 ~~~~~~li~~~~~ 417 (455)
T TIGR00892 405 ASGSIVVSAGLFL 417 (455)
T ss_pred HhhHHHHHHHHHH
Confidence 8877666655543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00019 Score=71.46 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=71.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.+|.++.+++.+++.+. .+.+.++...++.|++.+...|....++.+..|+++
T Consensus 57 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 116 (379)
T TIGR00881 57 SNPRVFLPIGLILCAIVNLFFGFS--------------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE 116 (379)
T ss_pred hCCeehhHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence 556667888988888888877765 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 013109 382 RSLCSALSLTTVALGNYLSSL 402 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~ 402 (449)
|+.++++++....+|..+++.
T Consensus 117 r~~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 117 RGTWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred heeeEeehhccchhHHHHHHH
Confidence 999999999999999999984
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=66.19 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=67.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.++..+.+.+... +...|++.+++..++.|++ +..++.....+.+..|+++
T Consensus 97 ~G~R~v~~~~~ll~~i~~~~~~~a~~---------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~ 160 (462)
T PRK15034 97 FGGRRWTVFSTAILIIPCVWLGIAVQ---------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK 160 (462)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHc---------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH
Confidence 67778889999988888887776310 1125788889999999998 6688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013109 382 RSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
||+++|++....++|..++..+.
T Consensus 161 rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 161 QGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999655555555444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=66.03 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=74.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.+|.++.+++.+.+.+. .+.+.++...+++|++.....+....++.+..|+++
T Consensus 53 ~g~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
T PRK11102 53 FGRKPVILGGTLVFALAAVACALA--------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE 112 (377)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 556677888888888888877654 356677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++++.+....+|..+++.+.+.+.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 113 FSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877664
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0023 Score=64.94 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.+|.++.+++...+... .+.++++...+++|++.+...+.....+.+..|+++
T Consensus 65 ~g~r~~l~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 65 SGRKPVAIPGAALFIIASLLCSLA--------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHh--------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 444567778888888888776653 456677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.+.++.+....+|..+++.+.+.+.
T Consensus 125 r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 125 RAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876553
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=66.40 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=68.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+..+.++.+++.+.+...... ..+++.++...++.|+|.....+.....+.+..|+++
T Consensus 75 ~g~k~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~ 138 (402)
T TIGR00897 75 IGPLKTMMIGLLLWCVGHAAFIVFGLG----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN 138 (402)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcc----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH
Confidence 566677888888888886654322100 1355666777888999998888888888899999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGN-YLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~-~lg~~l~~~~ 407 (449)
|++++|+++...++|. .+|+.+.+.+
T Consensus 139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 139 LSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999996 5777766544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0024 Score=67.15 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=83.0
Q ss_pred HHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHH
Q 013109 278 IFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357 (449)
Q Consensus 278 li~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il 357 (449)
.+..|+.+.+..++.+| +++++.+.++.++++++.+++++.+....- ..+.++.++...++
T Consensus 67 ~l~~~ig~~~~G~l~Dr-------~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~------------g~~a~~~l~~~R~l 127 (490)
T PRK10642 67 FLIRPLGGLFFGMLGDK-------YGRQKILAITIVIMSISTFCIGLIPSYATI------------GIWAPILLLLCKMA 127 (490)
T ss_pred HHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHH
Confidence 34456666655445555 667788999999999999988876322000 00112247788899
Q ss_pred HHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 358 ~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+|+|++...+....++.+..|++.||.++++......+|..+|+.+...+
T Consensus 128 ~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 128 QGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888766544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0026 Score=64.57 Aligned_cols=113 Identities=20% Similarity=0.121 Sum_probs=95.2
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013109 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
.+++-++.+..+.+..|+...+ .+| +++++.+...++++.+|.++..+.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~l----t~r-------~~Rr~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALL----TGR-------LERRRLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hcc-------cchHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3556677777777777777763 333 444566777788888888888875
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.|++.+++.-++.|++-+..++....++.+.+|+++|++++|+.+....++..+|..+.+.+.+
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999998888765
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=66.14 Aligned_cols=86 Identities=9% Similarity=0.095 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..+.++.+++.+++.+. .++++++...++.|++.+...+.....+.+..|++.
T Consensus 69 ~g~r~~~~~~~~~~~i~~~l~~~~--------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~ 128 (394)
T PRK03699 69 IPLKRQLIFGFALMILAVAGLMFS--------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ 128 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch
Confidence 455567778888888888777653 456777888899999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+..+++.+...++|+.+++.+.+.+
T Consensus 129 r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 129 RGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=66.41 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
......+...++.|+... +.+| +++++.+.++.++.+++.+.+.+. .+.
T Consensus 43 ~~~~~~l~~~l~~~~~G~--------laDr---~grr~vl~~~~~~~~~~~~~~~~~--------------------~~~ 91 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGA--------FADS---FPKGRVMFIANGIKLLGCLLMLFG--------------------IHP 91 (393)
T ss_pred HHHHHHHHHHHHHhhhhH--------hhhc---cCCchhhHHHHHHHHHHHHHHHHH--------------------HHH
Confidence 334444444455555444 3343 566677888888887777655442 121
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+...+++|+++++..|...+++.+.+|+++|+++.|+.....++|..+|+.+.+.+.+
T Consensus 92 ---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 92 ---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999999999998886643
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0042 Score=67.67 Aligned_cols=253 Identities=11% Similarity=-0.012 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cch-----
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGW----- 106 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~----- 106 (449)
.+...+.++.++++.++..++-..+.+++..+.++ +++.+..++|++..+.+.+ |.+++..+..... +..
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccC
Confidence 35566788889999999999999999999988762 4456799999999998875 7777777765443 221
Q ss_pred -hhh-HhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCC
Q 013109 107 -GFG-IPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTK 184 (449)
Q Consensus 107 -iF~-i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 184 (449)
.|. ..++.+++.++.++.....++..++.+.+.....++........+. +... .
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-----------------------~~~~-~ 213 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK-----------------------RFST-R 213 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH-----------------------hhcc-C
Confidence 133 4445545555555555544443333322222233333222211000 0000 0
Q ss_pred ccchhhhhhhhhccccccccCCCC-ccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCce
Q 013109 185 DFSFFDKAAVEIQSDNIKESVNPW-RLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK 263 (449)
Q Consensus 185 ~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~ 263 (449)
...|. ..+. ....+..+++++...+.+.++...+.+|+.+.+.......+..+.++..+ .+.
T Consensus 214 ~~~~~---------------~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~--~l~ 276 (654)
T TIGR00926 214 SEHWP---------------LHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG--DVG 276 (654)
T ss_pred Ccccc---------------hhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC--ccC
Confidence 00000 0000 01223334567889999999999999999999998999999988887754 443
Q ss_pred eCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013109 264 IPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV 333 (449)
Q Consensus 264 i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~ 333 (449)
..+.....++.+-.++..++...+.++++.++.++ ..+.+++.-+.+.++++.+.+...+......-
T Consensus 277 g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 277 GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678889999998888888888999998554 56788899999999999999998888777766
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=69.06 Aligned_cols=90 Identities=19% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.++..+.. ..+.++++...+++|++++...|....++.+..|+++
T Consensus 103 ~g~r~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
T TIGR00894 103 YVFKWSIGIGMFLSSVISIVIPWAA------------------GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE 164 (465)
T ss_pred hCcchhhHHHHHHHHHHHHHHHHHH------------------HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence 5556677788877777766554321 1345678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|++++|+.+...++|..+++.+.+.+.+
T Consensus 165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 165 RSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0046 Score=63.07 Aligned_cols=87 Identities=21% Similarity=0.103 Sum_probs=70.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+..... .+++.++...++.|++.+...+.....+.+..|++.
T Consensus 75 ~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 75 IGRRPVMLAGVAFFILTCLAILLA--------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD 134 (406)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence 455567778888888777766553 356777788899999999988988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++..+++......+|..+|+.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888877654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=68.92 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=72.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++++.+.+. .+.+.+....++.++|+++..|.....+.+..|+++
T Consensus 76 ~G~~~~l~~~~~~~~~g~~~~~~~--------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~ 135 (475)
T TIGR00924 76 WGTKKTMVLGGIVLMLGHFMLAMS--------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD 135 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc--------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCC
Confidence 466678889999999998877653 245566677788999999999999999999988764
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 ---RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ---~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.+.++++...++|..+|+.+.+.+.+
T Consensus 136 ~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 136 MPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred cccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999887653
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0063 Score=62.61 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..|.++.+++.+..... .++++++...+++|++++...+.....+.+..|+++
T Consensus 78 ~Grr~~l~~~~~~~~~~~~~~~~a--------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~ 137 (413)
T PRK15403 78 IGRRPVLITGALIFTLACAATLFT--------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK 137 (413)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455567888888888887766653 577888889999999998777777777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++.+++++...++|..+|+.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 138 GIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=68.14 Aligned_cols=88 Identities=7% Similarity=-0.012 Sum_probs=69.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh-
Q 013109 303 TQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM- 381 (449)
Q Consensus 303 ~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~- 381 (449)
++++.+.+|.++.+++..++.+.. .+.+.+....+++++|.++..|....++.+..|++.
T Consensus 86 G~r~~~~~g~~~~~ig~~l~~~~~-------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~ 146 (500)
T PRK09584 86 GTKRVIMLGAIVLAIGYALVAWSG-------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP 146 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch
Confidence 666778899999988877766531 233445667788999999999998899999988654
Q ss_pred -HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 -RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 -~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++.+.++++...++|..+|+.+.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 147 RLDGAFTMYYMSINIGSFFSMLATPWLAA 175 (500)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999887753
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0024 Score=67.36 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++..++.+++.+.... ....+++.++...+++|++++...+....++.+..|++.
T Consensus 83 ~Grr~~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~ 148 (502)
T TIGR00887 83 LGRKRVYGMELIIMIIATVASGLSPGS--------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW 148 (502)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccCc--------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh
Confidence 555667778888888877766553100 001236678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+++++.+....+|..+|+.+...+.
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0047 Score=61.79 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=65.9
Q ss_pred hHhhhhhhhhccCCCCCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013109 285 DRFIVPVTRKFTGHKNGLTQLQRMGI-GLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEV 363 (449)
Q Consensus 285 ~~l~~~~~~k~~~~~~~~~~~~~i~i-G~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~ 363 (449)
..+..|+..++.+| .++++.+.+ +.++.+++.+.+... .+++.++...++++.++.
T Consensus 46 ~~~~~~~~g~l~Dr---~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~ 102 (375)
T TIGR00899 46 GIAVSQLLATRSDY---QGDRKGLILFCCLLAALACLLFAWN--------------------RNYFLLLVLGVLLSSFAS 102 (375)
T ss_pred HHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHhhhh
Confidence 33334444444444 555555444 455555555544432 456666666677788887
Q ss_pred HHhhhhHHHHhhhcChhhHHHH--HHHHHHHHHHHHHHHhHHHhhhh
Q 013109 364 FTFIGQLEFFYEQAPDAMRSLC--SALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 364 l~~p~~~~~i~~~aP~~~~g~~--~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
...|...+.+.+..|++.|+.. .+......++|..+|+.+.+.+.
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 149 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA 149 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH
Confidence 7888888888888888877654 57777777888888888877654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00072 Score=73.57 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=94.2
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 013109 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVRE---------- 335 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~---------- 335 (449)
.+++.+...+...+..++...+ .+| .++++.+.+|.++++++.++.++.+-....+..+
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~----~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYF----GTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHh----hcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 3556666666666666666663 333 3455678899999999999887654221000000
Q ss_pred --cCC-----------------CCCCCC--cchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHH
Q 013109 336 --HNY-----------------YDLPEM--PMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394 (449)
Q Consensus 336 --~~~-----------------~~~~~~--~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~ 394 (449)
+.. .|+++. ...+..+++..+++|+|++...+.+..++.+.+|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000 011111 12345567888999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhhc
Q 013109 395 LGNYLSSLLVTIVTS 409 (449)
Q Consensus 395 lG~~lg~~l~~~~~~ 409 (449)
+|..+|..+.+.+.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999887764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.009 Score=60.76 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .++++++...+++|++.+...+.....+.+..|++.
T Consensus 68 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (401)
T PRK11043 68 YGRKPVLLAGLSLFALGSLGMLWV--------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK 127 (401)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence 555667788888887777766653 466777888899999998888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.+.+..+...++|..+++.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 128 ANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888899989888887664
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0035 Score=62.28 Aligned_cols=85 Identities=20% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+.+.+. .+++.+....++.|++++...+.....+.+..| ++
T Consensus 65 ~G~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 123 (377)
T TIGR00890 65 FGPRAVAMLGGILYGLGFTFYAIA--------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK 123 (377)
T ss_pred cCccchhHHhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc
Confidence 455566788888888888777765 456777778889999999988888888877777 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+.+++++....++|..+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 124 RGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 99999999999999988766665544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0061 Score=70.81 Aligned_cols=91 Identities=9% Similarity=0.028 Sum_probs=73.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.++.++.+++.+...+.... .+++++++..+++|++.++..|...+++.+.+|++.
T Consensus 74 ~grk~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 136 (1146)
T PRK08633 74 FSKNRVIRIVKLFEVGLTLLIVLAYYL-----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN 136 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc
Confidence 566666777766655555444332111 357788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.++|+.....++|..+|+.+.+.+..
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887754
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0069 Score=61.82 Aligned_cols=85 Identities=12% Similarity=-0.070 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHH
Q 013109 307 RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCS 386 (449)
Q Consensus 307 ~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~ 386 (449)
.+.++.+++++++..+.+... ..++|.+....++.++......|+..+++.+..|+++|+.+.
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~ 132 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCPP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGA 132 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence 467777777777777665421 145676777777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhh
Q 013109 387 ALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 387 gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.....++|..+++.+...+.
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999988777654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0042 Score=65.23 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.++..+. .+.+.++...++.|++++... +....+.+..|++.
T Consensus 98 ~G~r~~~~~~~~~~~~~~~~~~~~--------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~ 156 (476)
T PLN00028 98 YGPRYGSAFLLMLTAPAVFCMSLV--------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI 156 (476)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh
Confidence 455667778888887777766653 356666677788999998654 45567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.++|+.+...++|..+++.+...+
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888776666544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0023 Score=66.39 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred HHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHH
Q 013109 278 IFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357 (449)
Q Consensus 278 li~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il 357 (449)
.+..|+.+.+..++.+| +++++.+.++.++.+++.++.++.+..... .-.+++.++...++
T Consensus 74 ~~~~~~g~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~R~l 134 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDR-------LGRKRMLMLTVWMMGIATALIGLLPSFSTI------------GWWAPVLLVTLRAI 134 (438)
T ss_pred HHHHhhHHHHHHHHHHh-------hccHHHHHHHHHHHHHHHHHHhcCCcHHHH------------HHHHHHHHHHHHHH
Confidence 34456666655555555 566778888999999888887765221000 00112346777899
Q ss_pred HHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 358 ~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+|++++...|....++.+..|++.||.+++..+....+|..++..+...+.
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877665543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=61.88 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=77.5
Q ss_pred hHhhhhhhhhccCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013109 285 DRFIVPVTRKFTGHKNGLTQLQR-MGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEV 363 (449)
Q Consensus 285 ~~l~~~~~~k~~~~~~~~~~~~~-i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~ 363 (449)
..++.|+.+|+..| .+++++. +..+.++.++++..+.+... ..+.+++....++.+++..
T Consensus 38 ~~~~g~~~Dr~~~~--~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----------------~~~l~~l~~~~~~~~~~~~ 98 (356)
T TIGR00901 38 KFLWSPLVDTVYLP--FFGRRRSWLVLTQVLLLSLLLILSFLVP-----------------STDLPLLAGLAFLIAFFSA 98 (356)
T ss_pred HHHHHHHHhcccCC--CCCccHHHHHHHHHHHHHHHHHHHcCCc-----------------chhHHHHHHHHHHHHHHHH
Confidence 44445556665322 1455554 45667777777666655421 1456667777778888888
Q ss_pred HHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 364 FTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 364 l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
...++..+++.+.+|+++|+.+.|+.....++|..+++.+.+.+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 99 TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999998876653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0085 Score=62.38 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=71.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++++++.+..++.+..... ...+....++.++...+++|++.+...|....++.+..|++.
T Consensus 82 ~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 82 FGRRDSLKIAAVLFFISALGSAWPEFGFTS--------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhcccccc--------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 556677888888888877766542110000 000111334567788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.+++++.....+|..+++.+...+
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886655443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=59.94 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+... .+++.++...++.|++.+...+...+...+..|++.
T Consensus 70 ~grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK11652 70 VGRRPVILVGMSIFILGTLVALFA--------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ 129 (394)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 555667788888888877766543 456778888899999999888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.+.+.++....+|..+|+.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887664
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0048 Score=65.10 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.+|.++++++.+.+.+.. .+...+....+++++|+++..|....++.+..|++.
T Consensus 78 ~G~r~~~~~g~~~~~~g~~~~~~~~-------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 78 LGTKRTIVLGAIVLAIGYFMTGMSL-------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD 138 (489)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc-------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence 4667789999999999998877631 112224467788999999999999999999998874
Q ss_pred --HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 --RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 --~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.+.+.+.+..++|..+|+.+.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 139 PRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999998887753
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.018 Score=61.18 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=87.6
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+.......+..+++.++...+. +| ++.++.+...-++.++..+.+.++... ...
T Consensus 48 alv~~a~~LP~~Llsl~aG~la----Dr-------~drrrili~~~~~~~~~~~~L~~l~~~---------------~~~ 101 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALA----DR-------FDRRRILILSQLLRALVALLLAVLAFF---------------GLL 101 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hc-------ccchHHHHHHHHHHHHHHHHHHHHHHh---------------CcC
Confidence 3455666666677777666643 33 444556666666666555554443221 126
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+.|.++...++.|++..+..|..++.+-+.+|+++...+.+++.+..+++..+|+++.+.+..
T Consensus 102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 788888888999999999999999999999999999999999999999999999998887653
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0043 Score=65.26 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=72.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .+++.++...++.|++.+...+....++.+..|++.
T Consensus 154 ~Grr~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 154 FGRKKVLLLSTLVTAVSGVLTAFS--------------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ 213 (505)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence 555567778888887777766653 467888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+.++++......+|..+++.+...+
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998887765544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=63.80 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=73.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++++++.+.... ....++|.+.+..++.|+|++...+.....+.+..| +.
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQE--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcc--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 678889999999999999888764110 011478888888999999999999998889999887 67
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.++|+.....++|+.+.+.+...+
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998655555533
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=63.52 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=76.4
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013109 292 TRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 371 (449)
Q Consensus 292 ~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~ 371 (449)
..++.+| +++++.+.++.++.+++.+++.+.+... .......+.++...+++|++.+...+....
T Consensus 55 ~G~l~dr---~g~r~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 55 FGHFGDR---IGRKKTLVITLLMMGIGTLLIGLLPSYA------------TIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred hhhhhhh---hhhHHHHHHHHHHHHHHHHHHhhCCChh------------hhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 3444444 6777788899888888887776642110 000011234677779999999999999999
Q ss_pred HHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 372 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 372 ~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.+..|+++|+++++.......+|..+++.+...+.
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.012 Score=60.79 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=80.7
Q ss_pred HHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHH
Q 013109 279 FWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLI 358 (449)
Q Consensus 279 i~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~ 358 (449)
+..|+.+.+..++.+| +++++.+.++.++++++.+...+.+... .-...+...++...+++
T Consensus 74 ~~~~ig~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~R~l~ 134 (432)
T PRK10406 74 LMRPIGGWLFGRIADK-------HGRKKSMLISVCMMCFGSLVIACLPGYE------------TIGTWAPALLLLARLFQ 134 (432)
T ss_pred HHHHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHHHHHHHhhcCCch------------hHHHHHHHHHHHHHHHH
Confidence 3344555544444454 6677888999999988888876642110 00002345678888999
Q ss_pred HHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 359 GCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 359 glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+|++...|....++.+..|+++||+++++.......|..++..+...+
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888887665444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.019 Score=60.54 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHhHhhhhhhhhccCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013109 283 IYDRFIVPVTRKFTGHKNGLTQLQ-RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361 (449)
Q Consensus 283 l~~~l~~~~~~k~~~~~~~~~~~~-~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glg 361 (449)
+...++.|+.+|+... .++.++ .+.++.++.+++...+++..+ ..+++++....++.+++
T Consensus 60 ~~~~l~gpl~Dr~~~~--~~Grrr~~ll~~~i~~~~~~~~~a~~~~-----------------~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 60 VFKFLWSPLMDRYTPP--FLGRRRGWLLATQLLLLVAIAAMGFLEP-----------------GTQLRWLAALAVVIAFC 120 (491)
T ss_pred HHHHHHHHHHHccccc--CCCCchHHHHHHHHHHHHHHHHHHHcCC-----------------cchHHHHHHHHHHHHHH
Confidence 4455556666664211 024444 366777777777777666421 14677888888899999
Q ss_pred HHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 362 EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 362 e~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.....++..+++.+..|+++|+.+.++......+|..+++.+...+.
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.01 Score=61.23 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=77.0
Q ss_pred HHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013109 282 PIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361 (449)
Q Consensus 282 pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glg 361 (449)
|+.+.+..++.+| +++++.+..+.++.+++.+.+.+.+... ... ......++...+++|++
T Consensus 70 ~ig~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~l~~~~~~~~-~~~-----------~~~~~~l~~~R~l~G~~ 130 (434)
T PRK15075 70 PLGAIVLGAYIDR-------VGRRKGLIVTLSIMASGTLLIAFVPGYA-TIG-----------LAAPLLVLLGRLLQGFS 130 (434)
T ss_pred hhHHHHHHHHhhh-------hchHHHHHHHHHHHHHHHHHHHhCCcHH-HHH-----------HHHHHHHHHHHHHhhcc
Confidence 4445544444555 5666788889988888888777642110 000 00011356677899999
Q ss_pred HHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 362 EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 362 e~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++...+....++.+..|++.||.++++.....++|..+|+.+...+.
T Consensus 131 ~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred ccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999988888887777666543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0075 Score=60.23 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=75.7
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
...++.+...+..++...+ .+| +++++.+.+|.++.+++.+.. .. .+.
T Consensus 40 ~~s~~~~~~~~~~~~~g~l----~dr-------~g~r~~~~~~~~~~~~~~~~~-~~--------------------~~~ 87 (355)
T TIGR00896 40 LTALPVLCFAVLAPLAPWL----ARR-------FGEERSVAAGLLLIAAGILIR-SA--------------------PGT 87 (355)
T ss_pred HHHHHHHHHHHHHHhHHHH----HHH-------hCchHHHHHHHHHHHHHHHHH-Hh--------------------ccH
Confidence 3444444445555554442 333 455567888888777776654 21 355
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.++...++.|+|.+...+.....+.+..| ++|++++++.+...++|..+++.+...+.
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777889999999988877777777776 58999999999999999999888776553
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=68.76 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++|+++...+++|+++.+..|...+++.+..|++.++.++|+.+...++|..+|+.+.+.+..
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999997754
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=59.54 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.++++++...++.|+|++. .++....+.+..|+++|++++++.+....+|..+++.+...+.
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999996 4566667789999999999999999999999999988877664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.024 Score=59.67 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccCCCcCC
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~~~~~~~ 419 (449)
.|.+.++...+++|+.|...+|....+..+--.++++|..+|+|+...++|+++|+.+...+.+..+..+..+|
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 46788888899999999999999999999999999999999999999999999999999886554444444444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.03 Score=49.54 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=69.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++-+.+|.++.++=...... .+.+.+++.-++.|+|..+.+...-.++.+.+.++.
T Consensus 64 lg~K~sm~lg~~~y~~y~~~~~~---------------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAIYIASFFY---------------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 56777888887776543332221 345678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++.+|+++...+.+..+|+.+.-.+-
T Consensus 123 ~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 123 IGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.16 Score=54.72 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHH-Hhhhhheeccccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALI-ASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~i-Gp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++.+.+.|+|.+.+.+.....+.++|| ++ |+++.++.....++|+++ +++..+++. .+|++.|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHH
Confidence 467889999999999999999999999999997 44 899999999999999975 666666665 36777777
Q ss_pred HhHHHHH
Q 013109 110 IPAVAMA 116 (449)
Q Consensus 110 i~~~~~~ 116 (449)
+.++..+
T Consensus 189 ~l~vl~~ 195 (591)
T PTZ00207 189 FLMSFAL 195 (591)
T ss_pred HHHHHHH
Confidence 6554433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0076 Score=62.81 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=89.2
Q ss_pred CceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 013109 261 SFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYD 340 (449)
Q Consensus 261 g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~ 340 (449)
+.++..+...+++-..=+++.+...+ +.+| .+....|.+|+.+.++=++.++++
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~k----lI~k-------iGHv~v~~lgLa~~~~Rf~~~S~L--------------- 456 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFK----LIEK-------IGHVNVMYLGLACNVGRFLYYSYL--------------- 456 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHH----HHHH-------hcccceeeehhhHHHHHHHHHHHh---------------
Confidence 45555555666665555555555444 3444 566678889999999988888887
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHH-HHHHHHHhHHHhhhhc
Q 013109 341 LPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV-ALGNYLSSLLVTIVTS 409 (449)
Q Consensus 341 ~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~-~lG~~lg~~l~~~~~~ 409 (449)
.|.|..++..+++|+.-++++....+++...+|++++..++|+..... ++|..+|+.+.+.+.+
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 577777777799999999999999999999999999999999977654 6677777666665543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=68.17 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHH-HHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW-FYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~-~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++...+.+++.+...+.....+.+.+|++. |+..++. +....++|..+||.++|++.+..||+..|++
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 45667777888888888888888888899998765 7777655 6678899999999999999999999999997
Q ss_pred hHHHHHHHHHH
Q 013109 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 388 ~~~~~~i~~~~ 398 (420)
T PRK09528 388 LGGIVLLFTLI 398 (420)
T ss_pred HHHHHHHHHHH
Confidence 66555444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=61.20 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=65.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChh--
Q 013109 303 TQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA-- 380 (449)
Q Consensus 303 ~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~-- 380 (449)
++++.+.+|.++++++.+++...+ .+.........+..+|.++..+...+++.+..|++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~ 134 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP 134 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence 556678899999888877554321 11122344445666777777787788899999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 381 MRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 381 ~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.|....+++....++|+.+++.+.+.+.
T Consensus 135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 135 RRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999988775
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.78 E-value=2.1e-06 Score=88.85 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---cccchhh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN---EGWGWGF 108 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~---~gw~~iF 108 (449)
+.+.+.+++.++|+|.|+..+....++.+..|++. |++..++......+|.+++..++-.+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 78889999999999999999999999999999887 99999999999999999998876555443 3499999
Q ss_pred hHhHHHH
Q 013109 109 GIPAVAM 115 (449)
Q Consensus 109 ~i~~~~~ 115 (449)
++..+..
T Consensus 175 ~~~~~~~ 181 (451)
T PF00083_consen 175 IFGAIPS 181 (451)
T ss_pred ccccccc
Confidence 8766443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0021 Score=66.81 Aligned_cols=70 Identities=6% Similarity=0.028 Sum_probs=56.7
Q ss_pred CCCCCcchHHHHHHH-HHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 340 DLPEMPMSIMWQVPQ-YFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 340 ~~~~~~~s~~~li~~-~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+....++.+.++.. .++.|++..++..+..++-.+..-+..+|.++++..+....+..+|+.+.+..-.
T Consensus 379 c~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 379 CDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred hccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 344445666555555 4678999999999999999999999999999999999999999999887775543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.061 Score=56.44 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhHhhhhhhhhccCCC-CCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHH
Q 013109 274 TLSVIFWVPIYDRFIVPVTRKFTGHK-NGLTQLQRMGI-GLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQ 351 (449)
Q Consensus 274 ~~~ili~~pl~~~l~~~~~~k~~~~~-~~~~~~~~i~i-G~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 351 (449)
...+....|+...+..|+.+.+.+|- .++++++.+.+ |....+++++++.+.........+. . .+.......+..
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~--~-~~~~~~~~i~~~ 117 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN--L-DKKTKPRAIIVF 117 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc--c-cccchhHHHHHH
Confidence 33334444444444444444443310 01455555444 5666667766666543210000000 0 000111233455
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhH--HHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMR--SLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~--g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+....+..++.....++..+++.+.+|+++| +.+.+....+.++|+.+|..+.+..
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677788888889999999999999976 6799999999999999998887754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0037 Score=65.63 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~iF~ 109 (449)
.+.+.|++.-++.|+..|...+...++.++..|+++ .+..|++|....-..+.+||++.|.+.+..+ .|+.|+
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 455668888889999999999999999999999987 7999999999999999999999999988775 889888
Q ss_pred HhHHHHHHHHHHHHh
Q 013109 110 IPAVAMAIAVVSFFS 124 (449)
Q Consensus 110 i~~~~~~l~~i~~~~ 124 (449)
...+.++++++.+..
T Consensus 452 ~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 452 FLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777776543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.067 Score=54.41 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhH--HHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMR--SLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~--g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++++.....+.+.......|...+++.+..|++.| +.+.+..+...++|..+|+.+.+.+.
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455544444455555556678877777776666544 55668888888999999998888664
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.059 Score=54.50 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.+.+.-+.+|+.++++++.+..-.... .++...+...++.+.|.++.-.+.+.++...-|++.
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~-----------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASS-----------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhh-----------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh
Confidence 677788999999999999887643222 455567778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
..+-+++....+++|..+|+.+++.+..
T Consensus 138 a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 138 AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999986653
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.023 Score=59.47 Aligned_cols=91 Identities=16% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+..+.++.+++.++...... .+.+.++...+++|++++..+|....+..+-+|+++
T Consensus 100 ~G~r~v~~~~~~~sa~~t~l~P~aa~------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E 161 (466)
T KOG2532|consen 100 FGARRVFFISGLISALLTLLTPLAAS------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE 161 (466)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence 67778899999988888877766532 455677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
|++..++.....++|.+++-.+.+.+.+.
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s 190 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCES 190 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 99999999999999999999899877653
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.033 Score=57.01 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+......++|..+.-..|.+.|+..+..=|...+..+|+.++..++=+.+-..+.+...
T Consensus 361 iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~ 419 (480)
T KOG2563|consen 361 IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILA 419 (480)
T ss_pred ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHh
Confidence 44455567788888888999999999999999999999988887776666656555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.032 Score=57.22 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++....+.++....+...+.+|+...+.+|-+ +++. +..+.+|..+.+++++.+...... ....
T Consensus 32 ~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~--------------~~~~ 97 (437)
T TIGR00792 32 LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF--------------SATG 97 (437)
T ss_pred CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC--------------Ccch
Confidence 44445566666666777777777666655411 1333 234677878888777766543100 0112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
..+|++..+++.+++..+..++..+...+.. |+++|++..+..+....+|..+++.+...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l 159 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL 159 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999988888888877 578999999999999999888877665544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.006 Score=61.86 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++...+.|+..|...|....++.+. |+++ |++..+++. ....+|..+||.++|++.+++|+ ..|+
T Consensus 291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 4567778888999999999999999999987 7665 788899886 56789999999999999999996 5577
Q ss_pred HhHHHHHHHHHH
Q 013109 110 IPAVAMAIAVVS 121 (449)
Q Consensus 110 i~~~~~~l~~i~ 121 (449)
+.+...+++++.
T Consensus 363 ~~~~~~~~~~~~ 374 (382)
T TIGR00902 363 FMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHH
Confidence 665544455443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.8 Score=47.69 Aligned_cols=128 Identities=9% Similarity=0.001 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCcc
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLP-EMPM 346 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (449)
.+.+++.+.+.+...+++..+.++.+| .++ ++....+.+|.++..+++++...-.+...+ -..+++++ ....
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~r-ir~---fg~~~~~~~~~~~~~~~~~li~l~~p~dap---~~~t~~~~~~~~~ 351 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKR-IRG---FGRKPTVLIGIIIHLIGFLLIHLSFPNDAP---LRPTDSPPLLFTP 351 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhh-hhh---cccCcchhHHHHHHHHHHHHHhccccccCC---CCCCccccccccc
Confidence 367777777777777766655554444 333 677778888888877777655443221000 00111111 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHH
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLL 403 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l 403 (449)
+.....+..+++|+++.+.....+.++.... ++.+..+.+++-+-.++++.++...
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566678999999999999999999999 6777788888888888877665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.7 Score=44.44 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.+.|.+....+..|+-.|..++.....+.++.|+++|-.++|...+.-++|-.+++.+...++
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356666677788999999999999999999999999999999999999999999988776554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.041 Score=58.30 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.+..+.++.++..+|.++.++. .++++++...++.|+|.++.......++.+.+|++.
T Consensus 116 ~GRk~~l~~~~~~~~iG~ii~~~a--------------------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~ 175 (513)
T KOG0254|consen 116 IGRKKTLLLAVVLFLIGAIIIALA--------------------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI 175 (513)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh
Confidence 455567888999999999888875 478899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 013109 382 RSLCSALSLTTVALGNYLSSL 402 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~ 402 (449)
||...++.++...+|..+|..
T Consensus 176 RG~l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 176 RGTLVSLYQLFITIGILLGYC 196 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988833
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.01 Score=59.49 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=77.2
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013109 290 PVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 369 (449)
Q Consensus 290 ~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~ 369 (449)
|.++++.++ .+.+..+.+|....++++++.+.. .++..++.+-++.|+.-+.+.+.
T Consensus 86 ~~~G~~SD~---yGRkpvll~c~~~va~s~ll~~~S--------------------~~F~afv~aR~l~Gi~kgnl~v~- 141 (451)
T KOG2615|consen 86 PLWGCLSDR---YGRKPVLLACLIGVALSYLLWALS--------------------RNFAAFVLARFLGGIFKGNLSVI- 141 (451)
T ss_pred hhhhhhhhh---hCchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhhhhccCchHHH-
Confidence 334444444 555668888888888877776653 45656777789999999888876
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 370 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 370 ~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
-+++.+.++++.|+.+++..+..+++|-.+||++++.+..
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5799999999999999999999999999999999998765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0013 Score=69.96 Aligned_cols=132 Identities=13% Similarity=0.104 Sum_probs=3.0
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----h-----h--
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV----R-----E-- 335 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~----~-----~-- 335 (449)
+++.+.+-+..++...+..++ .+| .+..+.+++|.+++++|.++++.-+-....+. . +
T Consensus 41 G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 344444444445555444542 222 23446789999999999998876544311110 0 0
Q ss_pred cCCCC-------------------CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHH
Q 013109 336 HNYYD-------------------LPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG 396 (449)
Q Consensus 336 ~~~~~-------------------~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG 396 (449)
+...| ++.....++.+++..++.|+|..-.++.+.+++-++++++..+.+.|+.+.++.+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 00001 01222345678889999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhc
Q 013109 397 NYLSSLLVTIVTS 409 (449)
Q Consensus 397 ~~lg~~l~~~~~~ 409 (449)
..+|-.+.+.+.+
T Consensus 190 Pa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 190 PALGFLLGSFCLR 202 (539)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9999777776654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.089 Score=53.41 Aligned_cols=56 Identities=7% Similarity=-0.035 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.....++.+++.....|...+++.+..++ ++...|......++|..+|+.+.+.+.
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 45556778888888888887777665433 345556666777888888888776553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.012 Score=59.64 Aligned_cols=77 Identities=22% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHH
Q 013109 39 ALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA 118 (449)
Q Consensus 39 ~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~ 118 (449)
...+.+++.|...+...+...+..++++ ++++.+++.....++|..+||.++|++.+..||+..|++.....+++
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3344456667777778888777776532 28999999999999999999999999999999999999876655544
Q ss_pred HH
Q 013109 119 VV 120 (449)
Q Consensus 119 ~i 120 (449)
++
T Consensus 384 ~~ 385 (390)
T TIGR02718 384 IL 385 (390)
T ss_pred HH
Confidence 43
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.15 Score=54.78 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=76.9
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
.|+...+.+...+..|+.++ +.+. ++++..+.+|.++..+|+++.+.. .
T Consensus 81 ~w~~~~~~l~~av~~~~~G~--------LSDl---fGRr~~~i~g~~l~vvG~Iv~atA--------------------~ 129 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGR--------LSDL---FGRRYFFIIGSLLGVVGSIVCATA--------------------Q 129 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHH--------HHHH---hcchHHHHHHHHHHHhHHHHhhcC--------------------C
Confidence 34555555554444455444 4444 666778899999999999988754 5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
++..++...++.|+|.+..... ...+.+.+|.+.|+...++.....-+....|+.+.+.+
T Consensus 130 ~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 6677899999999998777754 45689999999998888777665555555565655543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.03 Score=59.25 Aligned_cols=111 Identities=10% Similarity=0.122 Sum_probs=90.1
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013109 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
.+|+.++.....++..|+...+ .+| ++-+..+.+|.+++++|++...+.
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l----~~r-------fg~R~v~i~G~~v~~~g~~lssF~-------------------- 131 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSAL----CNR-------FGCRTVMIAGGLVAALGLLLSSFA-------------------- 131 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHH----Hhh-------cCchHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 5677888888888888887763 444 567789999999999999999986
Q ss_pred chHHHHHHHH-HHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 346 MSIMWQVPQY-FLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 346 ~s~~~li~~~-il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.++|.+++.+ ++.|+|.++.+.+....+. .-.++.|+.++|+.....++|..+=+.+...+.
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 5677766666 8899999999988776665 667788999999999999998888777777554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.041 Score=56.53 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++.+--..|+.++++-++.+++.-. +. .......+..-+.+-+++---+.+.-.+..+..|.+.
T Consensus 375 iGRk~iq~~GF~~~~i~~~~~~~~y~-------------~~--~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 375 IGRKYIQLMGFFIMTIFFFVIAGPYN-------------QL--ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred hhhHHHHHhhHHHHHHHHHHHcCCcc-------------cc--cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 45556667899999888887775310 00 0111112222233333433333445556788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
||++-|++-...-+|..+|....+...+
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~ 467 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTD 467 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence 9999999999999999999888776653
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.18 Score=52.90 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=75.4
Q ss_pred HHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHH
Q 013109 281 VPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360 (449)
Q Consensus 281 ~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~gl 360 (449)
..+...+..++.+|++ ++.-+.+..++..++.+++...... .+...++...++.|+
T Consensus 73 ~~~Gs~~~~~la~~~G-------RK~~l~~~~~l~~~~~~~~~~s~~~-----------------~~~e~li~GR~i~Gl 128 (485)
T KOG0569|consen 73 GMIGSFSSGLLADRFG-------RKNALLLSNLLAVLAALLMGLSKSA-----------------PSFEMLILGRLIVGL 128 (485)
T ss_pred HHHHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHH
Confidence 3445555555566644 3345566666666665555543222 466788999999999
Q ss_pred HHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013109 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 361 ge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
..++.....--++.+.+|++.||.+..+..+...+|..+|..+..
T Consensus 129 ~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 129 ACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999998855543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.024 Score=58.22 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHH-HHHHHHHHhhhhheeccccccc------hhhh
Q 013109 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFS-INIGALIASSVLVWIQDNEGWG------WGFG 109 (449)
Q Consensus 37 ~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~-~niG~~iGp~lgg~L~~~~gw~------~iF~ 109 (449)
.++..+.|+..|.+.+....++.+..|++. |+++.+++... ..+|..+|..++|++.|++|-+ ..|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 334457899999999999999999999887 89999998875 5799999999999999987655 4445
Q ss_pred HhHHHHHHHHHHHHh
Q 013109 110 IPAVAMAIAVVSFFS 124 (449)
Q Consensus 110 i~~~~~~l~~i~~~~ 124 (449)
++++..++..+.+++
T Consensus 379 v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 379 VFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555544444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.55 Score=47.79 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=77.2
Q ss_pred hhhhhhhccCCCC-C--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH--HHHHHHHHHHHHH
Q 013109 288 IVPVTRKFTGHKN-G--LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM--WQVPQYFLIGCAE 362 (449)
Q Consensus 288 ~~~~~~k~~~~~~-~--~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~--~li~~~il~glge 362 (449)
..++...+.++++ . ++...-+..|.++.+.+..++.+.-..-. +..++.+.+...+ ...+.+++.|+|.
T Consensus 30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~------~~~~~~~~~~~~g~~~a~l~F~l~G~G~ 103 (403)
T PF03209_consen 30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA------ESGQQSSGPFWLGLALAALAFLLYGLGV 103 (403)
T ss_pred HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc------ccccccccccHHHHHHHHHHHHHHHhhH
Confidence 3444555444432 0 12333456777777777666554433210 0000111112222 3566778899999
Q ss_pred HHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 363 VFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 363 ~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.....+.++.+.+.+|++.|+++.++-+.+.-+|..+++.+.+.+.+
T Consensus 104 ~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 104 HASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred hHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999886653
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.098 Score=53.14 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=80.0
Q ss_pred eCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 013109 264 IPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE 343 (449)
Q Consensus 264 i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~ 343 (449)
+..++...+.+..++....+ -.....+.+| +++++...++.+++.+-++.+.+....
T Consensus 46 LS~~q~~ll~aiPil~Gall-Rl~~g~l~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~~--------------- 102 (417)
T COG2223 46 LSEGQKGLLVAIPILVGALL-RLPYGFLTDR-------FGGRKWTILSMLLLLIPCLGLAFAVTY--------------- 102 (417)
T ss_pred CCHHHHHHHHHHHHHHhHHH-HHHHHhhhcc-------cCchHHHHHHHHHHHHHHHHHHHHccC---------------
Confidence 66666666666666554433 1112223333 788888999999999999988886422
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013109 344 MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 344 ~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.+.|+++..-++.|++.+-... +...+.+--||+++|.++|++. ..|+|..+...+.-
T Consensus 103 --~~~~~ll~~gll~G~~GasFav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P 160 (417)
T COG2223 103 --PSTWQLLVIGLLLGLAGASFAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP 160 (417)
T ss_pred --CchHHHHHHHHHHhcccceehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence 5557788888888888765544 4668899999999999999998 66666655544433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.28 Score=51.32 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=84.4
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++...+.++....+++.+.+|+++.+.+|.+ +++. +..+.+|...+++++.++.... . -+...
T Consensus 39 ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p-~-------------~~~~~ 104 (473)
T PRK10429 39 LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH-L-------------FEGTA 104 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC-C-------------CCccH
Confidence 45555566666677888888888776665421 1344 4456678777778776554310 0 00112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.++|+.+.+++..++..+..++..+...+.+ ++++|...++.-....++|+.+.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888899999999999999999999 6999999998867777777666655443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.21 Score=50.57 Aligned_cols=62 Identities=10% Similarity=-0.213 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++|.+....++.+++.....|...+.+.+. ++++++..+......++|..+|+.+.+.+.+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777888998888888776666554 4557788888888888999999888886643
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.6 Score=44.17 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013109 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+.+.++..+.+.+.+.++|-|+ .|...++-....|... |..-.-.. .-..+|.++...+.=.+..++||||-
T Consensus 161 ~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~ 232 (528)
T KOG0253|consen 161 GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYL 232 (528)
T ss_pred cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3446777889999999999999 9999999988888765 55444444 55677888877776556667899986
Q ss_pred hhH-hHHHHHHHHHHHHh
Q 013109 108 FGI-PAVAMAIAVVSFFS 124 (449)
Q Consensus 108 F~i-~~~~~~l~~i~~~~ 124 (449)
... ..+.++.+...++.
T Consensus 233 l~~~~~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 233 LFTSSTPLMFAARFLVWV 250 (528)
T ss_pred HHHHHhHHHHHHHHHhhc
Confidence 553 44555444444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.41 Score=50.05 Aligned_cols=124 Identities=10% Similarity=0.009 Sum_probs=88.0
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++.-.+.+++..-+++-+.+|+++.+.+|.+ +++. +..+.+|...+++++.++...... +...
T Consensus 42 l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~--------------s~~~ 107 (460)
T PRK11462 42 IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL--------------SMNG 107 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC--------------Ccch
Confidence 44555566666666777788887766655422 1333 345667877888887665542100 0112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-hhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-~~~~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
...|+...+++..++.-+...+..+.....++ +++|+..++.......+|..+++.+...
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p 168 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP 168 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25678888899999999999999999999998 8899999999999999888887776543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.39 Score=49.66 Aligned_cols=123 Identities=10% Similarity=-0.005 Sum_probs=81.2
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++....+.++...-+++.+.+|++..+.+|-+ +++. +..+..|.+..++++.++...... +...
T Consensus 42 ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~--------------~~~~ 107 (444)
T PRK09669 42 LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF--------------GATG 107 (444)
T ss_pred CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC--------------Ccch
Confidence 44445555666666677777777766665521 1333 334556767777776554432100 0113
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
..+|....+++.+.+..+..++..+...+.. ++++|+..++.-.....+|+.+++.+..
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888877 5688998888888888888888776544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.1 Score=56.90 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=78.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH----HHHHHh-----hcC-------------CCCC---------CCCcchHH-HH
Q 013109 304 QLQRMGIGLFISILSMIAAAVLELI----RLRMVR-----EHN-------------YYDL---------PEMPMSIM-WQ 351 (449)
Q Consensus 304 ~~~~i~iG~~l~ai~~l~l~~~~~~----~~~~~~-----~~~-------------~~~~---------~~~~~s~~-~l 351 (449)
..+.+++|.++++++.++.++-+.. .++... ++. ..|. ..+...+| .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 3457899999999999988876443 111110 000 0010 01112233 57
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+...++.|+|+...++.+.+++-+.+-++..+.+.|+.+.++.+|-++|-.+.+...+
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999888887765
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.45 Score=49.77 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=82.9
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++..+...+...++.|+.+.+ ..|. -+.++.+..|.+++++|.++...++.. +.
T Consensus 74 G~viaa~slg~~i~~liF~~W--------s~k~--~~~k~Pli~s~ii~~~g~llY~~l~~~----------------~~ 127 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW--------SNKT--GSVKKPLIVSFLIAIIGNLLYLALAYV----------------PN 127 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc--------cccc--CCcccCHHHHHHHHHHHHHHHHHHHhc----------------cc
Confidence 344455666666666666652 2221 234677899999999999988777643 12
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 347 -SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 347 -s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
..|++....++.|+|.+-....- .++...+-.++|.++++.....+.+|..+|+.+...+...
T Consensus 128 ~~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 128 GVKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred chHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 67889999999999966655443 4666666667777888888888888888888888777654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.48 Score=50.11 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=84.5
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
...+.....++...++..+..++-++ ++++..+..++++..++-+..++. .++
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~-------~GRk~~~~~~~~~~~i~~~~~a~a--------------------~~~ 171 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDR-------FGRKPVLLVSLLLFIIFGILTAFA--------------------PNY 171 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhh-------cccHHHHHHHHHHHHHHHHHHHHh--------------------CcH
Confidence 33444444455555556555555555 455567778888777777666664 688
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.+++..++.|++..-.......++.+..+++.|+.++.+ ......++.+++++.+.+.
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 7777777777777776554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.55 Score=47.11 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++.+.+..++++.++|.++=.. .+.+.+.....+.|.|....++..-+++-++-|++
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~---------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~- 131 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSL---------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR- 131 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-
Confidence 78888889999988888776544 24567888889999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+.++|+|....++|..+++.+.--+.+
T Consensus 132 ~~~mtglYs~sl~~~aaLaa~lavpla~ 159 (395)
T COG2807 132 VGLMTGLYSTSLGAGAALAAALAVPLAQ 159 (395)
T ss_pred hhhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence 5789999999999999999888765554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.19 Score=51.77 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=93.0
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++...+.+.+..++++.+.+|+.+.+.+|-+ +++. +..+.+|...+++++.++....+. +-+...
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~------------~~~~~~ 101 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA------------GLSFTA 101 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc------------hhhhhh
Confidence 56666677777788888888888766665311 1443 344567888888888877754110 001113
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-hhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
...|+.+.+++..++.-+...+..+...+.++ +++|...++.-.....+|+.+...+...+.
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55677888888899999999999999999998 578999999999999999977766666554
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.27 Score=47.76 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc---ccchhhhHhH
Q 013109 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE---GWGWGFGIPA 112 (449)
Q Consensus 36 ~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~---gw~~iF~i~~ 112 (449)
=++++.+.|+...+..-..-+.++...|+|+ .+.+|+..+..-|+|-.+-|++.|+|.++- .|--.|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 3688899999988888778889999999887 999999999999999999999999998853 4555666555
Q ss_pred HHHHH
Q 013109 113 VAMAI 117 (449)
Q Consensus 113 ~~~~l 117 (449)
..+.+
T Consensus 429 ~~~aL 433 (459)
T KOG4686|consen 429 GLMAL 433 (459)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.5 Score=46.63 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+++++++..++.|.|..+..+..+.++....|++.+++.+++...++++|..+||.+.+.+..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999997763
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.27 Score=46.00 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCC-CChHHHhhhhhhHHHHHH-HHHHHHHHHhhhhheeccc--cccchh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDD-ADEAEKKHKSSFFNWFYF-SINIGALIASSVLVWIQDN--EGWGWG 107 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~-~~~~~~~~r~~~~~~~y~-~~niG~~iGp~lgg~L~~~--~gw~~i 107 (449)
+.+.+.+.+.+.|++.|...|...+++.+.+++ ++ |....+.... ...+|..++|.+++.+... .+|++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567778888889999999999999999999987 33 8888888888 6889999999888877654 688887
Q ss_pred hhHhHHH
Q 013109 108 FGIPAVA 114 (449)
Q Consensus 108 F~i~~~~ 114 (449)
|.+....
T Consensus 167 ~~~~~~~ 173 (338)
T COG0477 167 FLLAALL 173 (338)
T ss_pred HHHHHHH
Confidence 7765543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=3 Score=43.13 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQLQ-RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~~~-~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++....+.++...++...+.+|+.+++.+|.+ +++.++ .+.+|.+..++...++.... . +.....
T Consensus 41 l~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~ 107 (448)
T PRK09848 41 VGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP-T------------DWSHSS 107 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc-C------------CCCcch
Confidence 45555666666667777777777666655411 123333 33555554444444332211 0 001112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh-hhHHHHHHHHHHHHH
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD-AMRSLCSALSLTTVA 394 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~-~~~g~~~gl~~~~~~ 394 (449)
..+|....+++.+++..+..++..+.....+++ ++|...++.-....+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 455667777888999999998888876665544 567776665544333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=89.96 E-value=26 Score=36.13 Aligned_cols=52 Identities=8% Similarity=-0.030 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHH
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGN 397 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~ 397 (449)
.++|.....+++......+..+....-+.+...++.=|.+.|++.+..-+=+
T Consensus 338 ~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 338 GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 5789999999999888888888888888888888888888888877654444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.015 Score=60.16 Aligned_cols=89 Identities=25% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++..++.++..+... ..+++.+....++.|+|-+...+....++.+.+|++.
T Consensus 73 ~GRk~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~ 135 (451)
T PF00083_consen 73 YGRKPALIISALLMIIGSILIAFAPS-----------------YNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH 135 (451)
T ss_pred cccccccccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccc
Confidence 45556677888888888887776410 0267888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||...++.+....+|..++..+...+
T Consensus 136 R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 136 RGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999998887765444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=89.80 E-value=27 Score=36.23 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHH
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
.+...++...++-=+|.=..-.....++++.+|+++||..+|.-+..+++-..+.-.+.
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666777777789999999999999999999999999998887775543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=89.63 E-value=11 Score=39.61 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHH-HHHHHHHhHHHhhh
Q 013109 354 QYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV-ALGNYLSSLLVTIV 407 (449)
Q Consensus 354 ~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~-~lG~~lg~~l~~~~ 407 (449)
+.++.-.++--.+-+.-|.++-..+++.|-.+=+..-... .+|-.+|+.+.+.+
T Consensus 382 ~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l 436 (472)
T TIGR00769 382 QNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGL 436 (472)
T ss_pred HHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHH
Confidence 5556666666677788899999999999999887755444 47777777766653
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=89.18 E-value=8.8 Score=36.73 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=69.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.+|...+.+|.++..+|+.++...-.. .-...+.|.+.....+.+.|....+........++-|. .
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~-------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSG-------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC-------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 677788899999999999876543211 01125777777777888888888888888888899985 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.+.|+--...++++.+=+.+...+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHH
Confidence 99999999999999887665555433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.64 Score=48.70 Aligned_cols=68 Identities=10% Similarity=-0.060 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-----cchhhh
Q 013109 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-----WGWGFG 109 (449)
Q Consensus 36 ~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-----w~~iF~ 109 (449)
......+.+++.|........++.+..|++. ++..++++....|+|..+|+.++|++.++.| ++.-+.
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~ 426 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWL 426 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 3444567777777877778999999999887 8999999999999999999999999988877 654444
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.44 E-value=6.5 Score=39.46 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=63.6
Q ss_pred ccc-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheecccc
Q 013109 25 TCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNE 102 (449)
Q Consensus 25 ~~~-~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~ 102 (449)
+|. ....+.+.+++++++-|++..+....--+-......+++-++ +..+..|+... ....+-++...+++-++.+..
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 455 555778999999999999999877766554443332222100 11455555444 334445555566666777666
Q ss_pred cc--chhhhHhHHHHHHHHHHHHhccc
Q 013109 103 GW--GWGFGIPAVAMAIAVVSFFSGTR 127 (449)
Q Consensus 103 gw--~~iF~i~~~~~~l~~i~~~~~~~ 127 (449)
+. .+.|..+++..+++.+.....++
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 55 78899888777777765544333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.4 Score=42.80 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh---H
Q 013109 306 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM---R 382 (449)
Q Consensus 306 ~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~---~ 382 (449)
+.+.+|.+++.+|.+++...... ...++..+.+.+.+.+.++++|.++.=|....+..++.+++. +
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-----------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-----------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-----------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-----------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 45778999999999886654211 000112445678888899999999999999999999999873 4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 383 SLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 383 g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
......+....++|+.++..+...+.
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhc
Confidence 55666778888999999988777665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.44 E-value=15 Score=33.82 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh-hhHHHHHHHHHH-HHHHHHHHHhHHHhhhh
Q 013109 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD-AMRSLCSALSLT-TVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~-~~~g~~~gl~~~-~~~lG~~lg~~l~~~~~ 408 (449)
+.+.++...++.|++.+...|....++.+..|+ +.++...+.... ...+|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777779999999999999999999998 778888888888 57788888886665554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.04 E-value=3.6 Score=42.62 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred HHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccc---ccchhHHHHHHHHHHHhHhhhhhhhhcc
Q 013109 220 KAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS---LSIFDTLSVIFWVPIYDRFIVPVTRKFT 296 (449)
Q Consensus 220 k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~---l~~ln~~~ili~~pl~~~l~~~~~~k~~ 296 (449)
+++++...+.+..=+.|....+..+-+.++. | +|-.| .+-..++.=++.+|+.....+++-.|+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-------G-----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G 99 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-------G-----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG 99 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-------C-----CCcccccccccccccccceecccccccccccccccc
Confidence 3355555555555567777666666555542 3 33333 3445566667888998888888877776
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCcchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013109 297 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLP---EMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 373 (449)
Q Consensus 297 ~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~---~~~~s~~~li~~~il~glge~l~~p~~~~~i 373 (449)
+| +..+..|.+..+++..+..+....-.... |++ .....+-..++...+.-++.-.+..+.=++.
T Consensus 100 RR------RPfI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L 167 (498)
T KOG0637|consen 100 RR------RPFILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALL 167 (498)
T ss_pred cc------cchHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHH
Confidence 55 23567888888888887776544322222 222 2224555566666777777767776777777
Q ss_pred hhhcChhhHHH-HHHHHHHHHHHHHHHHhHHHh
Q 013109 374 YEQAPDAMRSL-CSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 374 ~~~aP~~~~g~-~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.+.+-...+-. +.+.+.++.++|+.+|-++..
T Consensus 168 ~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 168 ADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 77777766666 999999999999999977654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.78 Score=46.88 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhhHhHH
Q 013109 35 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGIPAV 113 (449)
Q Consensus 35 ~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~i~~~ 113 (449)
.+.+.-++.|.-.|..++.+.+..++..|++| -++.|++|.+..-.++.+||.+.+.+.+.. +-|..+..-++
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555678999999999999999999999998 588999999999999999999999887643 45666665555
Q ss_pred HHHHHHHHH
Q 013109 114 AMAIAVVSF 122 (449)
Q Consensus 114 ~~~l~~i~~ 122 (449)
.+.++++.+
T Consensus 417 ll~iGl~~L 425 (438)
T COG2270 417 LLLIGLLLL 425 (438)
T ss_pred HHHhhHhhE
Confidence 555555543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=85.74 E-value=0.69 Score=47.51 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHH-HHHHHHHHHHHhhhhheeccccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF-YFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~-y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+...+.-.+-++--++.-....-++++++|++- .++.+.+. ..+..+|..+.+.++|++.|++|++-.|+
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 456677888888999999999999999999999765 56777774 58889999999999999999999999998
Q ss_pred HhHHHHHHHHHH
Q 013109 110 IPAVAMAIAVVS 121 (449)
Q Consensus 110 i~~~~~~l~~i~ 121 (449)
+-+.+.+...+.
T Consensus 384 img~iv~~~~li 395 (412)
T PF01306_consen 384 IMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 765544443333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.86 Score=47.99 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
++|..+..=.++|+..|++..++.+.+.+..||+- |+.+.+++. .--.+|--+|.++||.+.+.++=+-.|.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 56666777789999999999999999999999987 666666543 34467777888899999999998888888
Q ss_pred hHHHHHHHHHHHHhcccccc
Q 013109 111 PAVAMAIAVVSFFSGTRLFR 130 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~ 130 (449)
.++.+++.++.+....+.++
T Consensus 532 ~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 532 FGIACLVTLALFISIQLLLK 551 (618)
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 88777777766655544443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.23 E-value=22 Score=34.64 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHH
Q 013109 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~ 394 (449)
.+.+.++-..-++.+|..+-.-.+..|++.|+..+..+..--+
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh
Confidence 5555667778889999999999999999999988876655444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.77 E-value=7.7 Score=40.53 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++-+.+|..+..+-.+...+ .|-+.+...-.+.|+|-.+.+...-.+..++.+++.
T Consensus 77 i~~K~~lv~ga~~y~~f~~gfl~---------------------~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 77 LGPKWALVIGATCYAAFPLGFLF---------------------PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHh---------------------cchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 67778888887776555544333 355677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+.+..++.+.....+..+|+.+.-.+...
T Consensus 136 ie~Nisi~Wai~~~~li~Ggi~l~~~~~~ 164 (461)
T KOG3098|consen 136 IERNISIFWAIGQSSLIIGGIILFIYFQF 164 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhheeeeEe
Confidence 99999999999999999998877766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 449 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 9e-26 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 6e-06 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-149
Identities = 102/434 (23%), Positives = 175/434 (40%), Gaps = 43/434 (9%)
Query: 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIG 87
+ + F+ L+LIALG+GGIKP VSS+ DQFD ++++ F+ FYF+IN G
Sbjct: 104 IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFG 160
Query: 88 ALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVA 147
+ AS + + N G FGIP V M +A V F+ G + + + P V+
Sbjct: 161 SFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220
Query: 148 ASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAV----EIQSDNIKE 203
+++ KVE + L+ S + + A V + + +
Sbjct: 221 SALLT-KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQ 279
Query: 204 SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK 263
+ V+ +++++R+L ++A F +++ Q +S ++LQ M
Sbjct: 280 LERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP-----QW 334
Query: 264 IPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAA 323
PA + + L V+ +P + + P + LT L++MG G+ I+ LS I
Sbjct: 335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVG 391
Query: 324 VLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRS 383
++L+ +SI WQ+ Y L+ EV LEF Y QAP AM+
Sbjct: 392 TIQLMM-----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440
Query: 384 LCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLT------ 437
+ +V +GN L V S + ++ FF+
Sbjct: 441 TIMSFWTLSVTVGNLWVLLANVSVKSP---TVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497
Query: 438 -------WYTYKRP 444
Y +
Sbjct: 498 VFALYARSYQMQDH 511
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 53/386 (13%)
Query: 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASS 93
+ F ++ LI +GTG +KP VS+ +D+ D + + + F+ F F IN+GA IA
Sbjct: 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPL 164
Query: 94 VLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKH 153
++ Q+ G+ F + A+ M I ++ ++ G + L +
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT---------LDPHYLRPTDPLAPE 215
Query: 154 KVELPADKSLLYETA----DAESNITGSRKLDHTKD-FSFFDKAAVEIQSDNIKESVNPW 208
+V+ K L N+ G L + + A + SV
Sbjct: 216 EVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK-- 273
Query: 209 RLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS 268
VT E L+ + +P++ ++F A+ Q S + P +
Sbjct: 274 ----VTSTEHLRVVS-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDS-----SWFPVSW 323
Query: 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILS---MIAAAVL 325
+ L ++ + P F T KN + + +GL + LS M L
Sbjct: 324 FQSLNPLFIMLYTPF---FAWLWTAWK---KNQPSSPTKFAVGLMFAGLSFLLMAIPGAL 377
Query: 326 ELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLC 385
+S +W V + L+ E+ L + AP A S
Sbjct: 378 Y--------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQM 423
Query: 386 SALSLTTVALGNYLSSLLVTIVTSIS 411
++ + ++G+ L++ LVT+ + S
Sbjct: 424 MSMWFLSSSVGSALNAQLVTLYNAKS 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 7e-04
Identities = 44/277 (15%), Positives = 85/277 (30%), Gaps = 67/277 (24%)
Query: 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLL-PIWATGIIFSAVY 239
+F D V+ D K + EE+ I+ + T +F +
Sbjct: 28 AFVDNFDCKD---VQ---DMPKS---------ILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 240 SQMSSL---FVLQGERMDTHVGNSSF----KIPPASLSIFDTLSVIFW--VPIYDRFIVP 290
S+ + FV + R++ S + P ++ + ++ ++ V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 291 VTRKFTGHKNGLTQLQR--------M-GIGLFISILSMIAAAVLELIRLRMVREHNYYDL 341
+ + + L +L+ + G G + + A V +Y
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWV---ALDVCL----------SYKVQ 177
Query: 342 PEMPMSIMWQVPQYFL-IG-CAEVFTFIGQLEFFYEQAPDAMRSLC---SALSLTTVALG 396
+M I W L + C T + L+ Q S S + L ++
Sbjct: 178 CKMDFKIFW------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 397 NYLSSLLVTIVTSISTKNGNLGWIPDNL-NRGHLHYF 432
L LL S +N L + N+ N + F
Sbjct: 232 AELRRLL----KSKPYENCLL--VLLNVQNAKAWNAF 262
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.78 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.77 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.65 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.58 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.5 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.9 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.88 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.19 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.19 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 97.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 97.81 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.78 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.21 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 96.75 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=185.41 Aligned_cols=349 Identities=28% Similarity=0.424 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhh---hhhHHHHHHHHHHHHHHHhhhhheeccccccchhh
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK---SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGF 108 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r---~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF 108 (449)
+.+.+++++++.|+|.|...|...+++.|++|+++ | ...+++++...++|.++||.+++++.++.+|++.|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 56788999999999999999999999999999887 6 45566799999999999999999999989999999
Q ss_pred hHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccch
Q 013109 109 GIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSF 188 (449)
Q Consensus 109 ~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 188 (449)
++.++..+++++.+....++.+++++++++..+..+.+....+++..+.+ ....+...+........ +.......+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~ 257 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYA---LVNIPTLGI 257 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHT---GGGTTTTCS
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhh---hcccchhhh
Confidence 99887766666655444433332222222211111111111111100000 00000000000000000 000000000
Q ss_pred hhhhhhhhccccccccCCCC-------ccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCC
Q 013109 189 FDKAAVEIQSDNIKESVNPW-------RLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSS 261 (449)
Q Consensus 189 l~~a~~~~~~~~~~~~~~~~-------~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g 261 (449)
+.................+| +..++..+++.|+.++...++.....++..+.+..+.+..+...++. + .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~ 333 (524)
T 2xut_A 258 VAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK--P--Q 333 (524)
T ss_dssp SHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC--C--S
T ss_pred hhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC--C--e
Confidence 00000000000000000000 00111122344445556666667777777777777666665543332 1 1
Q ss_pred ceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 013109 262 FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL 341 (449)
Q Consensus 262 ~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~ 341 (449)
+ .+.+.+..++.+..++..++..++..|..+|+.++ .++..++.+|.++++++++++...+.. .+
T Consensus 334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~ 398 (524)
T 2xut_A 334 W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-----------MD 398 (524)
T ss_dssp S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TT
T ss_pred e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hc
Confidence 1 24555667777777888888877665555655333 566778888999888888776653210 00
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 342 PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 342 ~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+...+.+++++.+++.|+++++..|..++++.+.+|+++||+++|+++...++|+.+|+.+.+.+.+
T Consensus 399 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01235677888999999999999999999999999999999999999999999999999999987754
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=172.61 Aligned_cols=324 Identities=20% Similarity=0.308 Sum_probs=205.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.|...|...+++.|.+|+++ ++|+.++++++...++|..+||.+++++.++.+|++.|++
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456788999999999999999999999999999876 3477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccc-c--CCCC-CchhHHHHH-------------HHHHHHhccCcCCCCccchhhccccccc
Q 013109 111 PAVAMAIAVVSFFSGTRLFRN-Q--KPGG-SPLTRICQV-------------VAASIRKHKVELPADKSLLYETADAESN 173 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~-~--~~~~-~~~~~~~~v-------------l~~~~~~~~l~~~~~~~~l~~~~~~~~~ 173 (449)
.++..+++++.+....++..+ + +++. .+..+..+. ......... ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~--------------- 245 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG-WNS--------------- 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS-SCC---------------
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc-Ccc---------------
Confidence 877666666655443332221 1 1111 111111110 000000000 000
Q ss_pred ccCCcccCCCCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhh
Q 013109 174 ITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 253 (449)
Q Consensus 174 ~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~ 253 (449)
.+.. ............... ....++... ....+.++..+..++++....++..+.+..+.+......
T Consensus 246 ------~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (491)
T 4aps_A 246 ------LPAY--INLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE- 312 (491)
T ss_dssp ------TTHH--HHHHHHHHHHHHHHH---HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH-
T ss_pred ------cccc--hhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-
Confidence 0000 000000000000000 000000000 111233334455666777778888888777765443321
Q ss_pred ccCCCCCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013109 254 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV 333 (449)
Q Consensus 254 ~~~~g~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~ 333 (449)
..+ .-..+.+.+..++.+..++..++...+.+ |+.+|+ .....++.+|.++++++++++......
T Consensus 313 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 377 (491)
T 4aps_A 313 --RVD--SSWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL----- 377 (491)
T ss_dssp --SCC--CSSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-----
T ss_pred --Hhc--cCccCHHHHhccchHHHHHHHHHHHHHHH----HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 112 01145667788888888888888877544 443331 455678889999999998877765422
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 334 REHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 334 ~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..++...+.+++++..++.++++++..|..++++.+..|+++||.++|+++...++|..+++.+.+.+.
T Consensus 378 ------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 378 ------YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp ------CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ------cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011223577888899999999999999999999999999999999999999999999999999877664
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=152.17 Aligned_cols=286 Identities=13% Similarity=0.066 Sum_probs=165.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~iF~ 109 (449)
.+.+.+++++++.|+|.|...|...+++.|.+|+++ |+++++++....++|.++||.+++++.+..+ ||+.|+
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456788999999999999999999999999999876 9999999999999999999999999888898 999999
Q ss_pred HhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh
Q 013109 110 IPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF 189 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l 189 (449)
+.++..++..+......++.++++...+ .. +. ... .+.++ + + ...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~--~~~--~~~~~-~------~--~~~~~---- 237 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRDTPQSCGLPP-IE---------------EY--KND--YPDDY-N------E--KAEQE---- 237 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCCCS-CT---------------TT--CCC---------------------------
T ss_pred HHHHHHHHHHHHHHhhccCCHhhcCCCC-hh---------------hh--ccc--ccccc-h------h--hhhcc----
Confidence 8876655544433222221111000000 00 00 000 00000 0 0 00000
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc---
Q 013109 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP--- 266 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~--- 266 (449)
.+..+.. .+..++...++....................+.++...+| .+.
T Consensus 238 ---------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~ 290 (451)
T 1pw4_A 238 ---------------------LTAKQIF-MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH-----FALDKS 290 (451)
T ss_dssp ----------------------CCTHHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC-----CCHHHH
T ss_pred ---------------------cccccch-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHH
Confidence 0000000 0111111111111111111111111122222333443344 222
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013109 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI-LSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~a-i~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
+.+..+..+..++..++... +.+|+. .+.++.+.++.++.+ ++++++.+. ..
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~----l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 343 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGW----MSDKVF-----RGNRGATGVFFMTLVTIATIVYWMN------------------PA 343 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHTS-----TTCHHHHHHHHHHHHHHHHHHTTSC------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHh-----cCCchhHHHHHHHHHHHHHHHHHHh------------------cc
Confidence 12223333333333333333 333420 044455556655555 555544331 01
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHH-HHHHHhHHHhhhhc
Q 013109 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVAL-GNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~l-G~~lg~~l~~~~~~ 409 (449)
.+.+......++.|++.....+....++.+..|++.||+++|+.+...++ |..+++.+.+.+.+
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777778889998899999999999999999999999999999999 99999999987754
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=140.22 Aligned_cols=263 Identities=9% Similarity=0.034 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec-cccc------
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-DNEG------ 103 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~-~~~g------ 103 (449)
.+.+.+++++++.|+|.|...|...+++.|.+|+++ |+++++++....++|.++||.+++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 467889999999999999999999999999999887 999999999999999999999999998 6555
Q ss_pred -------------------cchhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccch
Q 013109 104 -------------------WGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLL 164 (449)
Q Consensus 104 -------------------w~~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l 164 (449)
||+.|++.+...++..+.+...+ .++.+++.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~------------------------- 241 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHSD------------------------- 241 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCTTTCCCC-------------------------
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCccccccccc-------------------------
Confidence 99999876654444443332221 11111100000
Q ss_pred hhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccch
Q 013109 165 YETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSS 244 (449)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~ 244 (449)
..+ ++..++.+..++...++......+........
T Consensus 242 -----------------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (438)
T 3o7q_A 242 -----------------AKQ----------------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTA 276 (438)
T ss_dssp -----------------SST----------------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------ccc----------------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 000 00001111111111111111111111111111
Q ss_pred hHHHHHhh-hccCCCCCCceeCcc---cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHH
Q 013109 245 LFVLQGER-MDTHVGNSSFKIPPA---SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMI 320 (449)
Q Consensus 245 ~~~~~~~~-~~~~~g~~g~~i~~~---~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l 320 (449)
.....+.+ ++..+| .+.. .+..+..+..++..++... +.+| +++++.+.++.++.+++++
T Consensus 277 ~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPG-----MTAGFAANYLTGTMVCFFIGRFTGTW----LISR-------FAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHSTT-----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCC-----cchhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hcchHHHHHHHHHHHHHHH
Confidence 11111222 333334 2211 1222222222222223222 3334 5566677788887777776
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHH
Q 013109 321 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLS 400 (449)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg 400 (449)
++.+. .+. +.+...++.+++.....|...+.+.+..|++ ++.++++.. ...+|..++
T Consensus 341 ~~~~~--------------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 341 ISAFA--------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHC--------------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHc--------------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHH
Confidence 66552 222 3445558889999999999999999999987 899999887 677999999
Q ss_pred hHHHhhhhcc
Q 013109 401 SLLVTIVTSI 410 (449)
Q Consensus 401 ~~l~~~~~~~ 410 (449)
+.+.+.+.+.
T Consensus 398 ~~~~g~l~~~ 407 (438)
T 3o7q_A 398 TPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-15 Score=147.50 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...|...+++.|.+|+++ |+++++++....++|..+||.+++++.++.+||+.|++
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 467888999999999999999999999999999887 99999999999999999999999999998999999998
Q ss_pred hHHHHHHHH
Q 013109 111 PAVAMAIAV 119 (449)
Q Consensus 111 ~~~~~~l~~ 119 (449)
.++..++..
T Consensus 160 ~~~~~~~~~ 168 (375)
T 2gfp_A 160 LLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=102.82 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=66.5
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc--------
Q 013109 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-------- 101 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-------- 101 (449)
..+.+.++++++++|+|.|+..|...+++++..|+++ |++..+++.....+|.++++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 3578889999999999999999999999999999887 99999999999999999999888766543
Q ss_pred cccchhhhHhHHH
Q 013109 102 EGWGWGFGIPAVA 114 (449)
Q Consensus 102 ~gw~~iF~i~~~~ 114 (449)
..|++.+.+..+.
T Consensus 197 ~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 197 DGWRYMFASECIP 209 (491)
T ss_dssp THHHHHHHTTHHH
T ss_pred hhhHHHhhhhhhh
Confidence 3466666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-09 Score=110.52 Aligned_cols=87 Identities=13% Similarity=0.018 Sum_probs=66.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++++++++.+.+. .+.++++...++.+++.....+....++.+..|++.
T Consensus 286 ~g~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 286 IGGKNALLLAGTIMSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 344556667777777766555431 345556666677788887777888899999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSAL-SLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl-~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+..++ ++..+++|+.+|+.+.+.+.
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 9999998 58899999999999998664
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=79.73 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=79.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+++..... ..+++.++...++.|+|.+...+....++.+..|++.
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 150 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAE-----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccc-----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh
Confidence 67778899999999999887743211 1578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++++.+...++|..+|+.+.+.+.
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988775
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-05 Score=78.97 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=87.7
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+..+..+...+..++...+ .+| ++.++.+.+|.++.+++.+++.+.... ..++
T Consensus 67 ~~~~~~~~~~~~~~~~G~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~ 119 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSV----SDR-------SNPRVFLPAGLILAAAVMLFMGFVPWA----------------TSSI 119 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHH-------SCHHHHHHHHHHHHHHHHHHHHHCHHH----------------HSSS
T ss_pred HHHHHHHHHHHHHHhHHHH----HHh-------cCchHHHHHHHHHHHHHHHHHHhhhhc----------------cccH
Confidence 3344444444444554443 334 566678889999999999888762110 0567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++++...++.|++.+...|....++.+..|+++|++++|+.+...++|..+|+.+.+.+.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999887654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.2e-05 Score=72.69 Aligned_cols=87 Identities=10% Similarity=0.062 Sum_probs=76.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+.+. .+++.++...++.|++.+...+....++.+..|+++
T Consensus 62 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 121 (375)
T 2gfp_A 62 VGRRPVILVGMSIFMLATLVAVTT--------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 121 (375)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hCCchhHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH
Confidence 555567788999988888887765 366788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++++.+...++|..+|+.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 122 LRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999888664
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00014 Score=74.24 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=85.3
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013109 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+.....+...+..++...+ .+|+ +++++.+.+|.++.+++.+++.+. .+.
T Consensus 59 ~~~~~~~~~~~~~~~~g~l----~dr~------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~ 108 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFV----ADRI------IGARPAVFWGGVLIMLGHIVLALP--------------------FGA 108 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHT------SCHHHHHHHHHHHHHHHHHHHHSC--------------------CST
T ss_pred HHHHHHHHHHHHHHHHHHH----Hhcc------ccchHHHHHHHHHHHHHHHHHHHh--------------------hhH
Confidence 3444445555555555553 3341 244567888888888888877652 467
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh--HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013109 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM--RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~--~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++++...+++|+|.+...|....++.+..|++. |+.+.++++...++|..+|+.+.+.+.+
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888999999999999999999999999988 7788888999999999999998887653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00026 Score=72.85 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=77.6
Q ss_pred hhhccCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc-hHHHHHHHHHHHHHHHHHHhhhh
Q 013109 292 TRKFTGHKNGL-TQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM-SIMWQVPQYFLIGCAEVFTFIGQ 369 (449)
Q Consensus 292 ~~k~~~~~~~~-~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-s~~~li~~~il~glge~l~~p~~ 369 (449)
..++.+| + ++++.+.++.++.+++.+++.+. . +.++++...++.|++++...|..
T Consensus 74 ~G~l~dr---~~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 74 GGWIADR---FFGKYNTILWLSLIYCVGHAFLAIF--------------------EHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHTT---SSCSHHHHHHHHHHHHHHHHHHHHT--------------------SSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHh--------------------cccHHHHHHHHHHHHHhccccchhH
Confidence 3444444 5 77778888998888888877653 3 67788888999999999999999
Q ss_pred HHHHhhhcChhhHHHHHHH---HHHHHHHHHHHHhHHHhhhh
Q 013109 370 LEFFYEQAPDAMRSLCSAL---SLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 370 ~~~i~~~aP~~~~g~~~gl---~~~~~~lG~~lg~~l~~~~~ 408 (449)
.+++.+..|++.|+..++. ++...++|..+|+.+.+.+.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999877777 88889999999988877654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0087 Score=60.57 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=77.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL----PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA 377 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~----~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~a 377 (449)
+++++.+.++.+++.++.+..++.... .....-. .....+++.++...+++|+|++...+....++.+.+
T Consensus 82 ~GRk~~l~~~~~l~~i~~i~~a~~~~~------~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 82 FGRRDSLKIAAVLFFISGVGSAWPELG------FTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCTTTT------TSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhh------hhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 566678888999888888877753110 0000000 001257788999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 378 PDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 378 P~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++.|+...++.+....+|..++..+.....
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 9999999999999999999999887766554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00032 Score=70.38 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHH-HHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013109 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW-FYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~-~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
.+.+++...+.+++.+...+...+++.|.+|++. |++++++ +....++|..+||.++|++.++.||+..|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 4455666666777777777777889999999875 8898988 47778899999999999999888999999887
Q ss_pred HHHHHHHHHHHH
Q 013109 112 AVAMAIAVVSFF 123 (449)
Q Consensus 112 ~~~~~l~~i~~~ 123 (449)
++..+++.+..+
T Consensus 386 ~~~~l~~~~~~~ 397 (417)
T 2cfq_A 386 GLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 766666665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.5 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.25 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.65 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=4.2e-13 Score=132.90 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhhH
Q 013109 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~i 110 (449)
+.+.+++.+++.|++.|...|...+++.|.+|+++ |+++++++....++|..+||.+++++... .+|++.|++
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 56778999999999999999999999999999886 99999999999999999999999877654 489999998
Q ss_pred hHHHHHHHHHHH
Q 013109 111 PAVAMAIAVVSF 122 (449)
Q Consensus 111 ~~~~~~l~~i~~ 122 (449)
.+...++..+..
T Consensus 189 ~~~~~~~~~~~~ 200 (447)
T d1pw4a_ 189 PAFCAILVALFA 200 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 776554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.6e-10 Score=111.28 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=74.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013109 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++++++++.+.+. .+.++.+...++.+++.++..+...+++.+.+|++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 345 (417)
T d1pv7a_ 286 IGGKNALLLAGTIMSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred cccccchhhhHHHHHHhhhccccc--------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH
Confidence 566677888888888887776653 567778888899999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhHHHhhhhc
Q 013109 382 RSLCSALS-LTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~-~~~~~lG~~lg~~l~~~~~~ 409 (449)
||++.|+. ++..++|..+++.+.+.+.+
T Consensus 346 ~~~~~~~~~~~~~~~g~~i~~~~~G~l~~ 374 (417)
T d1pv7a_ 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999974 67788999999999887754
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=5.9e-06 Score=80.19 Aligned_cols=114 Identities=12% Similarity=-0.002 Sum_probs=88.5
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013109 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
++.+...+...+..++...+ .+| +++++.+.+|.++.+++.+++++.... ..+
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l----~Dr-------~g~r~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 115 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSV----SDR-------SNPRVFLPAGLILAAAVMLFMGFVPWA----------------TSS 115 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHH-------SCHHHHHHHHHHHHHHHHHHHHHCHHH----------------HSS
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHH-------cCchHHHHHHHHHHHHHHhhccccchh----------------hhh
Confidence 33444444444555555543 444 566678889999999988887765322 146
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013109 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++++...++.|++++...+....++.+..|+++|+.++|+++...++|..+++.+.....
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 7788888999999999999999999999999999999999999999999999988777554
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=6.3e-06 Score=78.00 Aligned_cols=88 Identities=8% Similarity=0.022 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccccccchhhh
Q 013109 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++...+.+++.+...|...+++.|.+|++. |++++++.+ ....+|..+||.++|++.+++||++.|+
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 456778888899999999999999999999999887 999999865 4567999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHh
Q 013109 110 IPAVAMAIAVVSFFS 124 (449)
Q Consensus 110 i~~~~~~l~~i~~~~ 124 (449)
+.+...++..+...+
T Consensus 384 ~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 384 VLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877665555544333
|