Query 013111
Match_columns 449
No_of_seqs 167 out of 323
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 00:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2864 Nuclear division RFT1 100.0 1.7E-82 3.6E-87 629.3 45.3 434 2-442 67-517 (530)
2 PF04506 Rft-1: Rft protein; 100.0 4.6E-77 1E-81 629.0 39.9 437 2-445 60-543 (549)
3 PRK10459 colanic acid exporter 100.0 5.6E-29 1.2E-33 262.7 42.5 404 19-445 77-482 (492)
4 TIGR01695 mviN integral membra 99.9 1E-19 2.2E-24 192.3 41.2 365 55-438 125-500 (502)
5 TIGR02900 spore_V_B stage V sp 99.9 4.9E-19 1.1E-23 186.3 40.6 403 8-425 68-487 (488)
6 COG2244 RfbX Membrane protein 99.8 2.9E-15 6.3E-20 157.6 40.9 296 53-368 116-414 (480)
7 PRK15099 O-antigen translocase 99.8 1.9E-15 4.2E-20 156.4 38.6 341 10-369 70-413 (416)
8 PF03023 MVIN: MviN-like prote 99.7 9.8E-13 2.1E-17 138.0 42.9 346 13-371 49-406 (451)
9 PRK01766 multidrug efflux prot 99.3 2.7E-09 5.9E-14 111.9 32.7 354 7-368 78-442 (456)
10 PRK09575 vmrA multidrug efflux 99.3 3.1E-08 6.7E-13 104.1 36.9 351 7-369 79-437 (453)
11 PRK00187 multidrug efflux prot 99.2 8.7E-08 1.9E-12 101.1 35.1 342 6-359 75-435 (464)
12 PF13440 Polysacc_synt_3: Poly 99.2 9.5E-09 2.1E-13 98.0 23.0 202 7-228 47-251 (251)
13 TIGR00797 matE putative efflux 99.2 2.9E-08 6.3E-13 99.5 27.4 253 15-274 67-325 (342)
14 COG0728 MviN Uncharacterized m 99.2 6.8E-06 1.5E-10 86.9 45.8 299 58-371 137-440 (518)
15 PF01943 Polysacc_synt: Polysa 99.1 7.8E-09 1.7E-13 99.4 21.5 164 54-228 108-272 (273)
16 COG0534 NorM Na+-driven multid 99.1 6.4E-07 1.4E-11 94.3 35.3 355 6-369 82-444 (455)
17 PRK10367 DNA-damage-inducible 98.9 9.4E-06 2E-10 85.1 35.8 348 6-370 75-433 (441)
18 PRK10189 MATE family multidrug 98.9 1.1E-05 2.4E-10 85.5 36.2 342 7-362 95-456 (478)
19 PRK01766 multidrug efflux prot 98.7 1.7E-06 3.7E-11 90.8 20.5 198 160-365 12-215 (456)
20 TIGR00797 matE putative efflux 98.6 4E-06 8.6E-11 84.0 20.7 191 169-367 2-196 (342)
21 PRK09575 vmrA multidrug efflux 98.6 7.3E-06 1.6E-10 86.2 22.0 202 158-366 10-213 (453)
22 PRK10367 DNA-damage-inducible 98.5 2E-05 4.3E-10 82.7 22.4 200 160-366 9-210 (441)
23 COG0534 NorM Na+-driven multid 98.3 6.1E-05 1.3E-09 79.4 21.5 203 158-368 15-221 (455)
24 TIGR02900 spore_V_B stage V sp 98.3 0.00013 2.8E-09 76.9 23.9 192 166-364 5-200 (488)
25 TIGR01695 mviN integral membra 98.3 0.00012 2.6E-09 77.5 23.8 196 163-367 3-206 (502)
26 PF14667 Polysacc_synt_C: Poly 98.3 4.3E-05 9.3E-10 67.0 15.9 140 286-430 1-144 (146)
27 PRK10189 MATE family multidrug 98.2 0.0002 4.3E-09 76.0 22.8 200 158-365 27-234 (478)
28 PRK00187 multidrug efflux prot 98.2 6.2E-05 1.3E-09 79.4 18.5 185 160-353 10-200 (464)
29 PRK15099 O-antigen translocase 97.9 0.0014 3E-08 68.0 20.7 192 163-366 4-195 (416)
30 PF03023 MVIN: MviN-like prote 97.8 0.02 4.4E-07 60.3 27.5 168 192-367 7-181 (451)
31 PF01554 MatE: MatE; InterPro 97.6 6.3E-05 1.4E-09 66.9 3.6 147 169-320 2-148 (162)
32 PF13440 Polysacc_synt_3: Poly 97.5 0.021 4.5E-07 54.0 21.1 167 184-369 8-174 (251)
33 PF01943 Polysacc_synt: Polysa 97.3 0.15 3.3E-06 48.4 27.3 187 166-370 5-193 (273)
34 PRK10459 colanic acid exporter 97.3 0.029 6.2E-07 59.4 20.1 182 161-362 6-188 (492)
35 COG0728 MviN Uncharacterized m 95.9 3.2 7E-05 44.5 28.5 149 160-311 7-160 (518)
36 COG2244 RfbX Membrane protein 95.5 3.7 8.1E-05 43.0 22.8 187 160-362 6-194 (480)
37 KOG1347 Uncharacterized membra 85.1 47 0.001 35.4 16.8 185 160-356 28-218 (473)
38 PF01554 MatE: MatE; InterPro 43.3 32 0.00068 29.8 3.9 86 9-94 61-152 (162)
39 PF04238 DUF420: Protein of un 41.0 1.5E+02 0.0033 25.7 7.7 26 411-436 77-102 (133)
40 PF12794 MscS_TM: Mechanosensi 33.7 1.6E+02 0.0034 29.9 7.6 72 12-84 188-261 (340)
41 KOG4112 Signal peptidase subun 29.4 2.4E+02 0.0052 23.0 6.3 56 66-130 2-57 (101)
42 PRK11909 cobalt transport prot 23.1 6.6E+02 0.014 23.9 12.0 29 341-369 100-128 (230)
43 PF14667 Polysacc_synt_C: Poly 22.0 4.7E+02 0.01 21.8 15.2 68 57-128 2-69 (146)
44 COG1033 Predicted exporters of 21.9 1.2E+03 0.026 26.4 13.4 64 355-421 261-333 (727)
No 1
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-82 Score=629.27 Aligned_cols=434 Identities=40% Similarity=0.622 Sum_probs=381.6
Q ss_pred ccccccCCcCchhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhccc----CCchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 013111 2 RADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS----YSNPYAQAIFINGFACVLELLAEPLYILS 77 (449)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~n~~wl~i~~g~~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~ls~iie~l~ep~~~~~ 77 (449)
|-+-.|+++..+++|.|..|+.|++.|+|.++++.++++|+++.... +.++|++++.++++|+++|+++||.+.+.
T Consensus 67 r~A~l~~gs~~~d~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~ 146 (530)
T KOG2864|consen 67 RLAELRIGSEPADTWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVS 146 (530)
T ss_pred HHHhccCCCCCCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHH
Confidence 44556778877779999999999999999999999998887775433 56678999999999999999999999999
Q ss_pred HhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhc-------cccCCCCCc
Q 013111 78 QNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFL-GYWGYFLLFG-------AFKTSDLFP 149 (449)
Q Consensus 78 q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~-~y~~~~~~~~-------~~~~~~~~p 149 (449)
|..+.++.|+.+|+.++++||++..+..+..++++++.+|++||++|++++++ .||.|+..++ ..+.++++|
T Consensus 147 Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllp 226 (530)
T KOG2864|consen 147 QCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLP 226 (530)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhcc
Confidence 99999999999999999999999988888888889999999999999999998 5577777766 335668899
Q ss_pred ccccC--cccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhcc--CccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHH
Q 013111 150 FRLGN--MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD--TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF 225 (449)
Q Consensus 150 ~~~~~--~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~--s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~F 225 (449)
+.+++ ...||+|+.+...+++.|+++||++|||||++|+... +..|||+|+++|||||+++|.+|+||||++|.+|
T Consensus 227 k~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~F 306 (530)
T KOG2864|consen 227 KVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYF 306 (530)
T ss_pred CCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHH
Confidence 98876 6679999999999999999999999999999999665 6779999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHH
Q 013111 226 ARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEA 305 (449)
Q Consensus 226 s~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~ea 305 (449)
+|..++++++|.+++.+++..++|++.++|+++++|||+||++++.++.|+||++++++.+||+||.|+|++|+||++||
T Consensus 307 A~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa 386 (530)
T KOG2864|consen 307 ARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA 386 (530)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCCchH
Q 013111 306 FLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGW 385 (449)
Q Consensus 306 f~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~~~~~~l~~~lp~~~ 385 (449)
|.+|+|+++|+.|+|+.|.++|++|++.+|++++++|..|+|+|||+||.+||.||+++|++++++....+ ...+|...
T Consensus 387 F~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~ld~-~~~l~~~~ 465 (530)
T KOG2864|consen 387 FAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDLSLDR-SLFLPFGP 465 (530)
T ss_pred HHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCh-hhccCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999997743322 12233222
Q ss_pred H-HHHHHHHHHHHHhHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 013111 386 P-ILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKII 442 (449)
Q Consensus 386 ~-~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~~~~~~~~~~~~~e~~~l~~~~ 442 (449)
+ ....++ +.. ++....+...+..|+.+|++|.++++..++..|+++.+.+-
T Consensus 466 ~~~~~~~~-----~s~-l~~~~~~~s~l~~hi~igvvc~la~l~~~al~~~~~~~~~~ 517 (530)
T KOG2864|consen 466 TLSIIFAG-----SSL-LCCTTWWLSYLAAHIAIGVVCLLATLGSTALILVVFIVILD 517 (530)
T ss_pred hHHHHHHh-----cch-hhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111211 111 22223344556679999999999999999999999988443
No 2
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=100.00 E-value=4.6e-77 Score=628.96 Aligned_cols=437 Identities=38% Similarity=0.628 Sum_probs=358.3
Q ss_pred ccccccCCcCc--hhhHHHHHHHHHhHhHHHHHHHHHHHHHHH------------Hhhccc-----CCchh-HHHHHHHH
Q 013111 2 RADIKCDGASR--EENAAKLLKVAWLTLPLGIFITIGACFFVL------------WWQGLS-----YSNPY-AQAIFING 61 (449)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~n~~wl~i~~g~~~~~~~~~~~~------------~~~~~~-----~~~~y-~~~~~~~~ 61 (449)
|.+.+|+++.+ +++|+|..|..|++.|++.+++..++++++ ++.... ..+|| ..++.+++
T Consensus 60 R~A~lR~~~~~~~~~~~~~~~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~ 139 (549)
T PF04506_consen 60 RRACLRQPSSSIDKSNWAQSINLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYG 139 (549)
T ss_pred HHHHhcCCCcccCcccHHHhhhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHH
Confidence 55666666654 678999999999999999888875544433 111111 13577 67999999
Q ss_pred HHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhc--cc-----------chHHHHHHHHHHHHHHHH
Q 013111 62 FACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASL 128 (449)
Q Consensus 62 ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~--~~-----------~~~v~~f~~~ql~~s~~~ 128 (449)
+++++|+++||+|++.|.+++++.|+++|+.|.++||+++++.+++. .+ ..++++|+.||++|+++.
T Consensus 140 ~s~~iELlsEP~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l 219 (549)
T PF04506_consen 140 LSAFIELLSEPLYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITL 219 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876443 11 135689999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCccccc---CcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhh--ccCccchhHHHHHh
Q 013111 129 FLGYWGYFLLFGAFKTSDLFPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVD 203 (449)
Q Consensus 129 ~~~y~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~--~~s~~~qG~Y~la~ 203 (449)
+.+|.... ..+..+.++.+|+... ....||+++++++++++.|+++||+||||||++|+. +.|++|||+|++++
T Consensus 220 ~~~y~~~~-~~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~ 298 (549)
T PF04506_consen 220 FFCYYWMY-FFPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVS 298 (549)
T ss_pred HhhHHhhc-cCcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHh
Confidence 88775432 2333333455665443 356789999999999999999999999999999999 99999999999999
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchh------hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCC
Q 013111 204 KLGSLVVRMVFLPFEESSYATFARSASGQYPQK------SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK 277 (449)
Q Consensus 204 nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~------~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~k 277 (449)
||||++||++||||||++|.+|||..+++++++ .++..+++..++|++.++|+++++|||++|+.++++++|+|
T Consensus 299 N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~ 378 (549)
T PF04506_consen 299 NYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR 378 (549)
T ss_pred hHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc
Confidence 999999999999999999999999987654333 24566789999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q 013111 278 WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS-AGSVGLILANSLNMIL 356 (449)
Q Consensus 278 W~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~-~G~~Gli~an~~nm~~ 356 (449)
|++++++.+|++||+|+|+||+||++|||++|+++++|++++|++|.++|++|+..+|++.+. +|+.|+|+|||+||.+
T Consensus 379 w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~l 458 (549)
T PF04506_consen 379 WSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSL 458 (549)
T ss_pred ccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999994 9999999999999999
Q ss_pred HHHHHHHHHHHHhccCcccc-cc-ccCCchHHHHHHHHHHHHHHhHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013111 357 RIIYSAIFIKHYFQGSSSFS-FR-SSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRE 434 (449)
Q Consensus 357 ri~~s~~~i~~~~~~~~~~~-l~-~~lp~~~~~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~~~~~~~~~~~~~e 434 (449)
||.||.+||++||++....+ .. ...|.. ..+ .+++.....+++..+..+.+.++..|+.+|++|+++ +..+|
T Consensus 459 RI~ys~~fI~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~----i~~~e 532 (549)
T PF04506_consen 459 RIIYSLRFIRRYFRNSGPSFSLFLPLRPSK-IVL-IAAISSAIVTYWFFGCTSFLSQFLIHIAVGVVCLLL----ILLEE 532 (549)
T ss_pred HHHHHHHHHHHHHhccCCCccccchhccHH-HHH-HHHHHHHHHhheeccccchHHHHHHHHHHHHHHHHH----HHHHH
Confidence 99999999999998743322 22 223332 222 223333444444444456778889999999998665 55667
Q ss_pred HHHHHHHHHhh
Q 013111 435 RSFIYKIIRFR 445 (449)
Q Consensus 435 ~~~l~~~~~~~ 445 (449)
|+.++..++++
T Consensus 533 r~~~~~~~~~~ 543 (549)
T PF04506_consen 533 RQLLKLFIKKV 543 (549)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 3
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=5.6e-29 Score=262.74 Aligned_cols=404 Identities=15% Similarity=0.112 Sum_probs=303.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHh
Q 013111 19 LLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR 97 (449)
Q Consensus 19 ~~n~~wl~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~ 97 (449)
.-+..|+++..|+.++++..... .+....+++|. ...+.+.++...+..+.++.....|++++|+..+..|....+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~ 155 (492)
T PRK10459 77 LSTLYWLNVGLGIVVFVLVFLLS-PLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAG 155 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555688888887766554433 22223345555 56778888889999999999999999999999999999999998
Q ss_pred HHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHH
Q 013111 98 CFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKL 177 (449)
Q Consensus 98 ~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~ 177 (449)
.+.++.++ ..+ +++++++.++++.+....+.++.... ..+ .|+... +....|++++++.+.+..++..+
T Consensus 156 ~~~~i~~~--~~~-~g~~~l~~~~~~~~~~~~l~~~~~~~--~~~-----~~~~~~-~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 156 FTFAVVSA--FFW-PGALAAILGYLVNSSVRTLLFGYFGR--KIY-----RPALHF-SLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHH--HHC-CcHHHHHHHHHHHHHHHHHHHHHHhc--ccC-----Ccccee-cHHHHHHHHhhhHHHHHHHHHHH
Confidence 88887766 334 56788889999877665544432211 111 111110 11123889999999999999999
Q ss_pred HHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 013111 178 LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLV 257 (449)
Q Consensus 178 lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~ 257 (449)
+.++.|++++|++.++++.|.|+.|.++.+++...+..++..+.+|.+|+.+ +|.++.++.+.+.++....+++|
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~-----~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQ-----DDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999899999999999975 34456778888999999999999
Q ss_pred HHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013111 258 FMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVIL 337 (449)
Q Consensus 258 ~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l 337 (449)
+..+....+++++.+++||+|.++ .++++++|.+..+.++++.....+++.++++...+.+... .++.++..+.+
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~~~~a--~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~---~~~~i~~~~~~ 374 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEKWNSA--IPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK---TFLFIPAIVIG 374 (492)
T ss_pred HHHHHHHHhHHHHHHhcChhHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH---HHHHHHHHHHH
Confidence 999999999999999999999884 4899999999999999999999999999999887766332 23333333445
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhccCccccccccCCchHHHHHHHHHHHHHHhHHhccccchHHHHHHHH
Q 013111 338 IQSAGSVGLILANSLNMILRIIYSAIFIKH-YFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHF 416 (449)
Q Consensus 338 ~~~~G~~Gli~an~~nm~~ri~~s~~~i~~-~~~~~~~~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i 416 (449)
...+|..|.+++..+...+....+.++.+| ..+.+....+++..|+...+.+|+. +.+.......+.......+...+
T Consensus 375 ~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~m~~-~~~~~~~~~~~~~~~~~~l~~~~ 453 (492)
T PRK10459 375 GQLAGLIGVALGFLLVQIINTILSYFLMIKPVIGLSYRQYILSIWKPFYLSLPMLI-VSYGLGLLLKGHLALGMLLAVQV 453 (492)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHH
Confidence 556799999999998888888888887744 4422222335566676666666643 44444333322223455677888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 013111 417 SVGLTCFCISSIVIYHRERSFIYKIIRFR 445 (449)
Q Consensus 417 ~~G~~~~~~~~~~~~~~e~~~l~~~~~~~ 445 (449)
.+|.++|.......+.++.+.+++..+.|
T Consensus 454 ~~g~~~Y~~~~~~~~~~~~~~~~~~~~~~ 482 (492)
T PRK10459 454 AAGVLAYLLMIVLSRHALVVEVKRQFCRS 482 (492)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 99999999998888877766666664444
No 4
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.90 E-value=1e-19 Score=192.32 Aligned_cols=365 Identities=13% Similarity=0.049 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHH--HHHHHHHHHHHHHH
Q 013111 55 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFA--LSQVAYAASLFLGY 132 (449)
Q Consensus 55 ~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~--~~ql~~s~~~~~~y 132 (449)
.-+++.+.+.++..+.......+|.+.+++.-+..+....+...+ .+.+.. .+ ++.++.+ ++.+...+...+.+
T Consensus 125 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~-~~~~~~--~~-~g~~~~~~~~~~~i~~~~~~~~~ 200 (502)
T TIGR01695 125 SLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVIL-SLLFFD--WN-YGQYSLALAIGVLIGGVAQLLIQ 200 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHH-HHHHHH--cc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999887765444 233332 22 4455544 66665555554444
Q ss_pred HHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHH
Q 013111 133 WGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM 212 (449)
Q Consensus 133 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~ 212 (449)
+.+...+. .+ ..|+... +...-|++++++.+...+++..++.+..|+.+ +...+.++.|.|+.++++-.++...
T Consensus 201 ~~~~~~~~-~~---~~~~~~~-~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~ 274 (502)
T TIGR01695 201 LPFLRKAG-FL---LKPRFNF-RDPGLKRFLKLFLPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGI 274 (502)
T ss_pred HHHHHHCC-Cc---ccCcCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHH
Confidence 43332221 10 1111110 11123899999999999999999999999976 8888889999999999999999888
Q ss_pred HhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC------CCCCCchHHH
Q 013111 213 VFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK------KWSDGEASTA 286 (449)
Q Consensus 213 lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~------kW~~~~~~~l 286 (449)
+..++..+.+|.+++...++| .++.++.+.+.++....++++...+....+++++.+++|+ +|.+ +.++
T Consensus 275 ~~~~i~~~~~P~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~--~~~~ 349 (502)
T TIGR01695 275 FGISLSTVLLPKLSRHASEGN---WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVM--TATI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--HHHH
Confidence 889999999999999986653 3557777888999999999999999999999999999995 3555 4589
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 287 LRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIK 366 (449)
Q Consensus 287 L~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~ 366 (449)
++++|+..++.+++.+....+++.++++.....+.... ++-++..+.+...+|..|..+|..+...+......++.+
T Consensus 350 l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~---~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 426 (502)
T TIGR01695 350 LAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV---VLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLN 426 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777773322 334445555666789999999999999998888888888
Q ss_pred HHhccCc-cccccccCCchHHHHHHHHHHHHHHhHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013111 367 HYFQGSS-SFSFRSSLPSGWPILLVSGVITLFSERIFLD--RQDFWATFLIHFSVGLTCFCISSIVIYHRERSFI 438 (449)
Q Consensus 367 ~~~~~~~-~~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~--~~~~~~~l~~~i~~G~~~~~~~~~~~~~~e~~~l 438 (449)
|.....+ ...+++..|+...+.+|++ +.+.......+ ..+.+..+...+.+|.++|...+...+.+|.+.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~as~~m~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~vY~~~~~~~~~~~~~~~ 500 (502)
T TIGR01695 427 RRLKGILPFGVLKVLAKLVIASAIIGG-VLYLIVSVSLGGVLVKNLLGLLAIGLIGLLVYFLGLALLKIEELNLL 500 (502)
T ss_pred HhcCcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHh
Confidence 7764322 2234566666665666644 33333321000 1345677888899999999999998888776654
No 5
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.88 E-value=4.9e-19 Score=186.32 Aligned_cols=403 Identities=16% Similarity=0.121 Sum_probs=267.1
Q ss_pred CCcCchhhHHHHHHHH-HhHhHHHHHHHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 013111 8 DGASREENAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRL 85 (449)
Q Consensus 8 ~~~~~~~~~~~~~n~~-wl~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~ 85 (449)
+++.|+++.++....+ |+++..|++.++++..+..+.......+|. ...+++++.+..+..+..+....+|.+.++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (488)
T TIGR02900 68 SAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKP 147 (488)
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH
Confidence 3445555556665554 488888887776654443221111224444 34578888899999999999999999999999
Q ss_pred HhHHHHHHHHHhHHHHHhHhhh--cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHH
Q 013111 86 RLVVETVATFSRCFTMCILIVK--QYEM-EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL 162 (449)
Q Consensus 86 ~~~~e~~a~~~~~v~~i~la~~--~~~~-~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l 162 (449)
.+..+....+++.+..+.+... ..+. +++.+.+.+.........+..+.+.+.+...+.+..+.++.+.+....|++
T Consensus 148 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l 227 (488)
T TIGR02900 148 PAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDL 227 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHH
Confidence 9999999999987765554321 1121 233333344433332322222222221111100000110001011123889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHhhccCc---------cchhHH-HHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCC
Q 013111 163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQ 232 (449)
Q Consensus 163 ~~~~~~~~~q~ilk~lltegdklii~~~~s~---------~~qG~Y-~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~ 232 (449)
++++.+.+.+++..++.++.|++++++..++ ++.|.| +++.++.+++ ..+...+..+..|.+++..+++
T Consensus 228 ~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s~~~~~~ 306 (488)
T TIGR02900 228 FSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDISEAMAKK 306 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999987532 344555 4667777877 4778899999999999998665
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCC
Q 013111 233 YPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVAT 312 (449)
Q Consensus 233 ~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~ 312 (449)
| .++.++.+.+.++....++.|........+++++.+++| |.+ +.+.++++|+..++.+++.+....+++.++
T Consensus 307 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~--~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 379 (488)
T TIGR02900 307 N---YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD--AGNFIRVLAPSFPFLYFSAPLQSILQGLGK 379 (488)
T ss_pred C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3 344667788899999999999999999999999999885 444 458999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCCchHHHHHH
Q 013111 313 EDQLKRSNDSLLVFSVIYIVMNVILI--QSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLV 390 (449)
Q Consensus 313 ~~~l~~~~~~m~~~si~~l~~~~~l~--~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~~~~~~l~~~lp~~~~~~~~ 390 (449)
++...+.+....++ .++..+.+. +.+|..|..+|..+.+.++.....++.+|.++. +.++++..++...++.+
T Consensus 380 ~~~~~~~~~~~~i~---~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 454 (488)
T TIGR02900 380 QKVALRNSLIGAIV---KIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIRI--TIDLSDFLIFALLGILV 454 (488)
T ss_pred chHHHHHHHHHHHH---HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHH
Confidence 98888777443333 333444454 668999999999999999899888888877633 23355554432222221
Q ss_pred HHHHHHHHhHHhccccchHHHHHHHHHHHHHHHHH
Q 013111 391 SGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCI 425 (449)
Q Consensus 391 ~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~~~~~ 425 (449)
.++........ +..+.+..++..+.+|.++|..
T Consensus 455 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~ 487 (488)
T TIGR02900 455 -YLGLSLLKYII-FNPNILINLLLIIILGFSLYIL 487 (488)
T ss_pred -HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhc
Confidence 12222212111 1123456666677777776653
No 6
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.79 E-value=2.9e-15 Score=157.64 Aligned_cols=296 Identities=16% Similarity=0.154 Sum_probs=218.2
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHH-HHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 013111 53 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA-TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG 131 (449)
Q Consensus 53 y~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a-~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~ 131 (449)
+...+....+...+...........|...+++.-+...... .+...+..+.. ...+ .+.|+...+...........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (480)
T COG2244 116 LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLF--AALG-LAVWALVLGAVVSLLVLLIL 192 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH--Hhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999888873333 12222222211 1122 45677777777644444333
Q ss_pred HHHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHH
Q 013111 132 YWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVR 211 (449)
Q Consensus 132 y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar 211 (449)
++...++.++ ..+. + ....-|++++++..+...++...+.++.|++++|++.++++.|.|+ +.+.-..+..
T Consensus 193 ~~~~~~~~~~-----~~~~-~--~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~-~a~~i~~~~~ 263 (480)
T COG2244 193 LGKKKRGLKR-----PILR-F--SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYS-AAQRLVSLLL 263 (480)
T ss_pred HHHhhhhccc-----cccC-c--hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecc-cccHHHHHHH
Confidence 3211111110 1111 0 1113388999999999999999999999999999999999999999 6666666677
Q ss_pred HHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHH
Q 013111 212 MVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC 291 (449)
Q Consensus 212 ~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc 291 (449)
.+..|+..+.+|.+|+..++++ .+++++.+.+.+|....++.|...+....+++++.+++|++|.+. .++++++|
T Consensus 264 ~~~~~l~~~l~P~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~--~~~l~il~ 338 (480)
T COG2244 264 IVASALNRVLFPALSRAYAEGD---RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASA--APILQLLA 338 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccch--hHHHHHHH
Confidence 7777999999999999987653 344566788899999999999999999999999999999999984 48999999
Q ss_pred HHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 013111 292 LYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILAN--SLNMILRIIYSAIFIKHY 368 (449)
Q Consensus 292 ~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an--~~nm~~ri~~s~~~i~~~ 368 (449)
...++..+++.....+++.++++...+.+..- .+..+...+.+...+|..|...+. .+.+..-..+..+...+.
T Consensus 339 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~i~~~~l~~~li~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (480)
T COG2244 339 LAGLFLSLVSLTSSLLQALGKQRLLLLISLIS---ALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVR 414 (480)
T ss_pred HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH---HHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888777422 245556666677777888888777 334444444444444443
No 7
>PRK15099 O-antigen translocase; Provisional
Probab=99.78 E-value=1.9e-15 Score=156.44 Aligned_cols=341 Identities=11% Similarity=-0.008 Sum_probs=225.9
Q ss_pred cCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhc-ccCCchhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHh
Q 013111 10 ASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQG-LSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRL 87 (449)
Q Consensus 10 ~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~ 87 (449)
..|+++.+++.+++. +++..|+++++++..+.-.... ...+++|...+...+.......+.+.+....+..-+.+..+
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 149 (416)
T PRK15099 70 HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNA 149 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777887775 8888888888766544312111 12233456667777776666666666666666655555555
Q ss_pred HHHHHHHHHhHHHHHhHhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHHHH
Q 013111 88 VVETVATFSRCFTMCILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC 166 (449)
Q Consensus 88 ~~e~~a~~~~~v~~i~la~~~~~~~-~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~ 166 (449)
.....+.++..+.. ...+...|.+ +.++..++|....+.. .|..+ +++. .+.+. .+.+.+....|++++++
T Consensus 150 ~~~~~~~~~~i~l~-i~~~~~~Gv~Ga~iat~i~~~i~~~~~--~~~~~-~~~~-~~~~~---~~~~~~~~~~k~ll~~g 221 (416)
T PRK15099 150 LSLIVGSLIGVAAY-YLCYRLGGYEGALLGLALVPALVVLPA--GIMLI-RRGT-IPLSY---LKPSWDNGLAGQLGKFT 221 (416)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHH--HHHHH-Hccc-eehHh---hhccCCHHHHHHHHHHH
Confidence 55544444443331 1112222333 2355555554422111 12221 1111 10000 01111112238899999
Q ss_pred HHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHH
Q 013111 167 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 246 (449)
Q Consensus 167 ~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~ 246 (449)
.+...+++...+.+-.|+.++++..+.++.|.|+.++++.+.+...+..|+.++.+|..++.. |+++.++.+++
T Consensus 222 ~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~------~~~~~~~~~~~ 295 (416)
T PRK15099 222 LMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT------EKRDITREIVK 295 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999952 12335555677
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHH
Q 013111 247 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVF 326 (449)
Q Consensus 247 ~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~ 326 (449)
..+....++.+........+|+++.+++||+|.+. .+++++.++...+...+........+.++++.....+ +..
T Consensus 296 ~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~--~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~---~~~ 370 (416)
T PRK15099 296 ALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAM--RDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAE---VSQ 370 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 77888888777777777899999999999999984 4899998887777666766654455555443332222 122
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111 327 SVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 369 (449)
Q Consensus 327 si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~ 369 (449)
.++.++..+.+.+.+|..|..++..+...+....+.....+++
T Consensus 371 ~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~~~~ 413 (416)
T PRK15099 371 FTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFLLYR 413 (416)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666677888899999999999999888888887766665
No 8
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.69 E-value=9.8e-13 Score=138.00 Aligned_cols=346 Identities=17% Similarity=0.177 Sum_probs=244.5
Q ss_pred hhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHh---hcccCCchh-H---HHHHHHHHHHHHHHhhhHHHHHHHhhhhhh
Q 013111 13 EENAAKLLKVAW-LTLPLGIFITIGACFFVLWW---QGLSYSNPY-A---QAIFINGFACVLELLAEPLYILSQNLLLLR 84 (449)
Q Consensus 13 ~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~---~~~~~~~~y-~---~~~~~~~ls~iie~l~ep~~~~~q~~l~f~ 84 (449)
+++-++..|... +...++++++++...++.+. .+...+++. . .-.++.....+..+++......+|.+-+|.
T Consensus 49 ~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~ 128 (451)
T PF03023_consen 49 EEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFL 128 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 333344444333 55555555665544433222 222232332 2 346889999999999999999999988888
Q ss_pred hHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHH
Q 013111 85 LRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLAN 164 (449)
Q Consensus 85 ~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 164 (449)
.-+.......+.-.+ ++.+.....+.+.+.+.++|....++...+.... ..++...+. .|.....+... |++++
T Consensus 129 ~~~~~~l~~N~~~I~-~~~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~-~~~~~~~~~---~~~~~~~~~~~-~~~~~ 202 (451)
T PF03023_consen 129 IPALSPLLFNLSIIL-SLLLLSNSWGQENIYALAWGVLIGAIIQFLIQLP-YLRRFGFRF---RPKFDWRDPNL-KRFLK 202 (451)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCcc---cccCCCCChhH-HHHHH
Confidence 777766665544332 2222212222123666777777666665443222 222211111 11111111123 77888
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHH
Q 013111 165 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 244 (449)
Q Consensus 165 ~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~ 244 (449)
........+...|+.+-.|+.+-+.+. ......++-|+.+-++|...+..++..+.||.+||..+++|. ++.++.+
T Consensus 203 ~~~p~~l~~~~~qi~~lv~~~laS~l~-~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~---~~~~~~~ 278 (451)
T PF03023_consen 203 LAIPLLLSSSISQINILVDRALASFLG-EGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW---EEFRKTL 278 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHH
Confidence 888889999999999999999888844 667889999999999999999999999999999998877533 4577778
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHccC-CCCCCc---hHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhh
Q 013111 245 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 320 (449)
Q Consensus 245 ~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~-kW~~~~---~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~ 320 (449)
.+.++....+.+|+..+....|+++++++++. +..+.+ ..+++++|+...|+.++|.++.-.+.|.++++...+.+
T Consensus 279 ~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~ 358 (451)
T PF03023_consen 279 RKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRIS 358 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHH
Confidence 88999999999999999999999999999953 444332 24799999999999999999999999999998888877
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013111 321 DSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 371 (449)
Q Consensus 321 ~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~ 371 (449)
....+ +-+..++.+.+.+|..|+++|+.+...+.........+|+.+.
T Consensus 359 ~~~~~---lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~ 406 (451)
T PF03023_consen 359 VISVV---LNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLGL 406 (451)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 54444 4444445678889999999999998888888888888888753
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.35 E-value=2.7e-09 Score=111.89 Aligned_cols=354 Identities=15% Similarity=0.076 Sum_probs=225.7
Q ss_pred cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 013111 7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNL 80 (449)
Q Consensus 7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~~ 80 (449)
..++.+.++-++..+.+. +++.+|+++++++....-+.......||. ..-+++++.+.....+.......+|-.
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~ 157 (456)
T PRK01766 78 LNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGL 157 (456)
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555566667776666 77778877666544332122222233442 133577778888888888888888888
Q ss_pred hhhhhHhHHHHHHHHHhHHHHHhHhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCccc
Q 013111 81 LLLRLRLVVETVATFSRCFTMCILIVKQ---YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMS 157 (449)
Q Consensus 81 l~f~~~~~~e~~a~~~~~v~~i~la~~~---~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (449)
-+.|.-......+.+++.+....+.... ++ .++.+.+++.........+.+..+..++...+..+......+.+..
T Consensus 158 g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (456)
T PRK01766 158 GKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPE-LGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWA 236 (456)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHH
Confidence 8888888888888777777665554211 12 2333333443333333322222222221111000001100000111
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111 158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 237 (449)
Q Consensus 158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~ 237 (449)
..|++++.+.....+.+...+....+..+++++ +.++.+.|++++|+.++.. .+..-+..+.=+.-++...++ |.
T Consensus 237 ~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~---~~ 311 (456)
T PRK01766 237 VIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAG---RT 311 (456)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC---CH
Confidence 237899999999999999998889999888886 4577999999999887764 334456666667777777554 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHH
Q 013111 238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 317 (449)
Q Consensus 238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~ 317 (449)
++.++.....+++...++++........++++.+++..|.-....+.+++.++++..|+.+++....+++++.|+++...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 55777777788888888888888888889999886543221111134678888889999999999999999999998877
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 318 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHY 368 (449)
Q Consensus 318 ~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~~~i~~~ 368 (449)
..+.... .++.++..|.+.. .+|..|..++..+...++.....+..++.
T Consensus 392 ~~~~~~~--~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 392 FITFIAY--WVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHH--HHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 7773221 1223333343332 37899999999888888877666665554
No 10
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.29 E-value=3.1e-08 Score=104.09 Aligned_cols=351 Identities=15% Similarity=0.091 Sum_probs=223.8
Q ss_pred cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCch----h-HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 013111 7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNP----Y-AQAIFINGFACVLELLAEPLYILSQNL 80 (449)
Q Consensus 7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~----y-~~~~~~~~ls~iie~l~ep~~~~~q~~ 80 (449)
.-|+.++++.++..+.+. +++.+|++.+++.....-........|| . ..-+++++++.....+.......+|..
T Consensus 79 ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~ 158 (453)
T PRK09575 79 KRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRND 158 (453)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666667677776666 8888888777765544322222222333 2 234688888888888888877777776
Q ss_pred hhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccc-cCccccc
Q 013111 81 LLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-GNMMSYD 159 (449)
Q Consensus 81 l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~-~~~~~~~ 159 (449)
-+-+.-......+.+++.+....+... .+ +++.+-+++.........+.+..+..+. +.+. .+..+. +.+...-
T Consensus 159 g~~~~~~~~~~~~~~~ni~l~~~li~~-~~-~Gi~Gaa~At~is~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 233 (453)
T PRK09575 159 ESPNLATGLMVIGALINIVLDYLFIGW-LD-WGLTGAAIATALAQLVVTVLGLGYFFSS-RANI--RLTLKELRFNWSLA 233 (453)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHHHh-CC-chhHHHHHHHHHHHHHHHHHHHHHHHCC-Ccee--EEeeccCCcCHHHH
Confidence 666666666766666666666555422 22 4444444443332222222222222211 1100 010000 0011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|+.++.+.....+.....+-.-.-..+++++.+.++.+.|+++++.-++. -....-+..+.-|.=++....++. ++
T Consensus 234 ~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~---~~ 309 (453)
T PRK09575 234 PKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQY---DN 309 (453)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCCh---HH
Confidence 56677777777766655555555555666666566799999999988774 445568888888988988866533 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCC-CCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 318 (449)
Q Consensus 240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~k-W~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~ 318 (449)
.++.++..+++....+.+........+++++.+...++ -.-+.+.+.+.+.++..|+.+++-+...++++.++++....
T Consensus 310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 389 (453)
T PRK09575 310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF 389 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 77778888999999888888888889999998765432 11122347899999999999999999999999999987776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111 319 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 369 (449)
Q Consensus 319 ~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~ 369 (449)
.+.... .+.++..|++...+|..|.-++..+...++........++..
T Consensus 390 ~~~~~~---~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~ 437 (453)
T PRK09575 390 ISIGNM---LIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWRDV 437 (453)
T ss_pred HHHHhH---HHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 663322 234455565555579999989888888887777766665544
No 11
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.21 E-value=8.7e-08 Score=101.06 Aligned_cols=342 Identities=12% Similarity=-0.009 Sum_probs=214.7
Q ss_pred ccCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHh
Q 013111 6 KCDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQN 79 (449)
Q Consensus 6 ~~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~ 79 (449)
|+-|+.+.++-++..+.++ +.+.++++.+++.. ..-........||. ..-+++++.+...-.+.......+|-
T Consensus 75 q~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~ 153 (464)
T PRK00187 75 IRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSA 153 (464)
T ss_pred HHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777 77777776655432 22111222333442 12356666666666777777666777
Q ss_pred hhhhhhHhHHHHHHHHHhHHHHHhHhhhccc--chHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccccc
Q 013111 80 LLLLRLRLVVETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLG 153 (449)
Q Consensus 80 ~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~--~~~v----~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~ 153 (449)
.-+.+.-..+...+.+++.+...++.+..-+ ..|+ ++.++++.. ..+.+..|..+++..+..+......+
T Consensus 154 ~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (464)
T PRK00187 154 LGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNG----MALALALYIRRHPAYAAYPLRKGLSR 229 (464)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHH----HHHHHHHHHHhcchhhhhhhhccccC
Confidence 7677777777777777776666555422111 1333 444444432 22222223332221100000000000
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCC
Q 013111 154 NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQY 233 (449)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~ 233 (449)
.+...-|++++.+.....+.+........|..+++++.+ ++.+.|++++|+.++..-. ..-+..+.-+.-++...+++
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~-~alAa~~i~~~i~~l~~~~-~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS-TQLAAHQIALQIVSVAFMV-PVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCC
Confidence 011123789999999999999999999999999999665 7999999999998874444 44777888888888876653
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC-CCCCCc----hHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013111 234 PQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLH 308 (449)
Q Consensus 234 ~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~-kW~~~~----~~~lL~~yc~yi~~la~Ngi~eaf~~ 308 (449)
. ++.++..+..+++...++++........++++++++.++ +-...+ +.++++++|+..|+.++|.+....+.
T Consensus 308 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lr 384 (464)
T PRK00187 308 L---LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIR 384 (464)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHh
Confidence 3 456666777888888888877777788899999988653 221111 23588888999999999999999999
Q ss_pred hhCCHHHHHHhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHH
Q 013111 309 AVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRII 359 (449)
Q Consensus 309 a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~ 359 (449)
+.|+++.....+.... ..+-++..|++.. .+|..|.-++-.+...++..
T Consensus 385 g~G~~~~~~~~~~~~~--~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~ 435 (464)
T PRK00187 385 GLKDARTTFLIGLACY--WLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAV 435 (464)
T ss_pred ccCccHHHHHHHHHHH--HHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHH
Confidence 9999987777763211 1122333333332 25777777766665555543
No 12
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.16 E-value=9.5e-09 Score=97.98 Aligned_cols=202 Identities=16% Similarity=0.272 Sum_probs=136.4
Q ss_pred cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh
Q 013111 7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLR 84 (449)
Q Consensus 7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~ 84 (449)
|+.+.++++..+..+... .....+++..++..... + ...++. ...+.+.++....+.+.+.....++.+.+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (251)
T PF13440_consen 47 RSAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA-Y----FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFR 121 (251)
T ss_pred HhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 444556666666766665 33333333322222222 1 113443 4567788888899999999999999999999
Q ss_pred hHhHHHHHHHHHhHHHHHhHhhhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHH
Q 013111 85 LRLVVETVATFSRCFTMCILIVKQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA 163 (449)
Q Consensus 85 ~~~~~e~~a~~~~~v~~i~la~~~~~~~~-v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~ 163 (449)
.-...+......+.+..+.+.....+.++ ++++..+++. ..+..+...+.+++ .+++ ... ++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~----~~~-~~~~ 186 (251)
T PF13440_consen 122 AYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAFIISALL----ALLISFYLLRRKLR------LSFK----FSW-RRLL 186 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHhccccC------CCch----hhH-HHHH
Confidence 99999999888885555554433222222 2344444443 22222221111100 1111 011 3479
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 013111 164 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS 228 (449)
Q Consensus 164 ~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~ 228 (449)
+.+.++..+++...+.+++|+++++.+.++++.|.|+.+.++...+...+.+++.+..+|.+||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 187 KYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999779999999999999999999999999999999999974
No 13
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.16 E-value=2.9e-08 Score=99.54 Aligned_cols=253 Identities=17% Similarity=0.069 Sum_probs=171.8
Q ss_pred hHHHHH-HHHHhHhHHHHHHHHHHHHHHHHhhcccC-Cchh----HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhH
Q 013111 15 NAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSY-SNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 88 (449)
Q Consensus 15 ~~~~~~-n~~wl~i~~g~~~~~~~~~~~~~~~~~~~-~~~y----~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~ 88 (449)
+-++.. +..+++..+|+++++++....-+...... +++. ...+++++++.....+.......+|..-+++.-..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (342)
T TIGR00797 67 RLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMY 146 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 334444 44458888888877766544322222222 2222 24578899999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHHHHHH
Q 013111 89 VETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTL 168 (449)
Q Consensus 89 ~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~ 168 (449)
.+....++.....+.+.....+.+++.+.+++.+...+...+.+..+..++++.+.. ..+ +.+.+...-|++++++.+
T Consensus 147 ~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~k~~~~~~~P 224 (342)
T TIGR00797 147 ITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLK-WEG-LLKPDWEVLKRLLKLGLP 224 (342)
T ss_pred HHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-ccc-ccCCCHHHHHHHHHhCch
Confidence 999888887777666543011202344555555554444444333222222111100 000 011011123889999999
Q ss_pred HHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 013111 169 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL 248 (449)
Q Consensus 169 ~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l 248 (449)
....++...+.++.|+.+++. .+.++.|.|+.+.++.+++ ..+...+..+..|..++...++ |.++.++.+.+.+
T Consensus 225 ~~~~~l~~~~~~~~~~~i~~~-~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 299 (342)
T TIGR00797 225 IAFRVILESLSFALLALLVAR-LGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG---DPKRAKEVARVAL 299 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 999999999999999988876 5788999999999998865 4666689999999999987554 3355677788899
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHc
Q 013111 249 KLVLLIGLVFMAFGPSYSYSLVRLLY 274 (449)
Q Consensus 249 r~~~~l~~~~~~~g~~~s~~ll~lll 274 (449)
+....+++++..+....++++++++.
T Consensus 300 ~~~~~~~~~~~~~l~~~~~~i~~~~~ 325 (342)
T TIGR00797 300 KLSLLLGLVLAIILILFREFIARLFT 325 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988888899999887764
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.16 E-value=6.8e-06 Score=86.88 Aligned_cols=299 Identities=15% Similarity=0.050 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchH-HHHHHHHHHHHHHHHHHHHHHHH
Q 013111 58 FINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEK-GIVFALSQVAYAASLFLGYWGYF 136 (449)
Q Consensus 58 ~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~-v~~f~~~ql~~s~~~~~~y~~~~ 136 (449)
++..--.++-++..-....++..-+|..-+.....-.+.-.+..+ +..+..++ .++.++|-++.++...+..+...
T Consensus 137 ~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l---~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l 213 (518)
T COG0728 137 RILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLAL---FLGPYFDPPLLALAWGVLIGGLLQLLVQLPAL 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHH---HhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666667776777777766666555544444433331111 12232234 56778888887777766544332
Q ss_pred HHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhh
Q 013111 137 LLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLP 216 (449)
Q Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~P 216 (449)
+..+ .. ..|+.+.++... |++...........-..|++.-.|..+-+... ....-.+.-++.+-.+|--.+---
T Consensus 214 ~~~g-~~---~~p~~~~~~~~l-k~~~~~~~p~~l~~sisQi~lli~~~iAS~l~-~Gsis~l~YA~rl~qlPlGifgva 287 (518)
T COG0728 214 RKAG-LL---IKPRFGFKDPGL-KRFLKLMLPALLGVSISQINLLIDTAIASFLA-EGSVSWLYYADRLYQLPLGIFGVA 287 (518)
T ss_pred HHcc-cc---cCCCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhhHHHHHHH
Confidence 2221 11 123322211223 56666677777778888888888877766654 334567778899999999999999
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC-CCCCCch---HHHHHHHHH
Q 013111 217 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGEA---STALRYYCL 292 (449)
Q Consensus 217 Iee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~-kW~~~~~---~~lL~~yc~ 292 (449)
+..+.+|.+||..+++|.+ +.++.+..-+|+..++.+|...+....|+|++++++.. +..+.++ ..++..|.+
T Consensus 288 i~tvllP~lSr~~~~~~~~---~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~ 364 (518)
T COG0728 288 LSTVLLPSLSRHAANGDWP---EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSL 364 (518)
T ss_pred HHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 9999999999998776443 35566778999999999999999999999999999986 4444322 368999999
Q ss_pred HHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013111 293 YVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 371 (449)
Q Consensus 293 yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~ 371 (449)
-.|..+++.+.-..+.|..+++.=.+.+..-.+.. +...+.+...+|..|++++-.++-.+.....++..++....
T Consensus 365 gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n---~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~ 440 (518)
T COG0728 365 GLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVN---ILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVY 440 (518)
T ss_pred hhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988777774333333 33334455557888877777666655566666666666543
No 15
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.14 E-value=7.8e-09 Score=99.36 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=114.1
Q ss_pred HHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 013111 54 AQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGY 132 (449)
Q Consensus 54 ~~~~~~~~ls~-iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y 132 (449)
.....++++.. ++...........|...+++.....+....+.+.+..+...... +.++.+..++....+...+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 184 (273)
T PF01943_consen 108 SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFLG---SSLWGFLLGLVISSLVSLIIS 184 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 46777777777788887888888888888877777665554322 225566666666555544433
Q ss_pred HHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHH
Q 013111 133 WGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM 212 (449)
Q Consensus 133 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~ 212 (449)
+.+.+.... +.+...+....|++++++.+++..++...+.++.|+++++++.++++.|.|+.+.++++.+...
T Consensus 185 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~ 257 (273)
T PF01943_consen 185 LFYLRRKLR-------PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFL 257 (273)
T ss_pred HHHHHHHHc-------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 333221100 1111111124489999999999999999999999999999999999999999999999987666
Q ss_pred HhhhhhhhhHHHHHHH
Q 013111 213 VFLPFEESSYATFARS 228 (449)
Q Consensus 213 lf~PIee~~~~~Fs~~ 228 (449)
.. ++..+.+|.++|+
T Consensus 258 ~~-~~~~~~~P~~s~l 272 (273)
T PF01943_consen 258 LS-SISTVLFPRLSRL 272 (273)
T ss_pred HH-HHHHHHHHHHHHh
Confidence 55 7777999999986
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.10 E-value=6.4e-07 Score=94.29 Aligned_cols=355 Identities=17% Similarity=0.095 Sum_probs=242.6
Q ss_pred ccCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCc----hh-HHHHHHHHHHHHHHHhhhHHHHHHHh
Q 013111 6 KCDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSN----PY-AQAIFINGFACVLELLAEPLYILSQN 79 (449)
Q Consensus 6 ~~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~----~y-~~~~~~~~ls~iie~l~ep~~~~~q~ 79 (449)
|+-|+.|.++-+++.+.+. +++.+|++++++.....-........+ ++ ..=+++..++...-.+.+......+-
T Consensus 82 q~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~ 161 (455)
T COG0534 82 QAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRG 161 (455)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777777777777666 898898777776544331211222222 23 23468889999999999999999999
Q ss_pred hhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccc-cCcccc
Q 013111 80 LLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-GNMMSY 158 (449)
Q Consensus 80 ~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~-~~~~~~ 158 (449)
.-|.|.-..+...+.++..+....+.+..-+.+|+.+-+++....-...++.++.+...+.+. ...+..+. +.+...
T Consensus 162 ~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 239 (455)
T COG0534 162 LGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRL--LSLFKKKLLKPDRKL 239 (455)
T ss_pred cCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchh--hhhhhhhccCCCHHH
Confidence 999999999999999999999888775432213443444444333323333333333222110 00110100 101123
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhh
Q 013111 159 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 238 (449)
Q Consensus 159 ~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~ 238 (449)
-|++++.+.....+++....-...-..+++++. .+....|+++.++.++..-..+ -+..+.-+.-.+....++ .+
T Consensus 240 ~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~~~~~-gi~~a~~~lvG~~~Ga~~---~~ 314 (455)
T COG0534 240 LKEILRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIFMPPF-GIAQAVTILVGQNLGAGN---YK 314 (455)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCC---HH
Confidence 478899999999999888888888888888887 6678888888888877655544 677777777777775543 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111 239 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 318 (449)
Q Consensus 239 ~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~ 318 (449)
+.++..+..++....++..........++++..+...+.-....+..++.+.+.+.|+.++|.+....+++.++++.-.-
T Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~ 394 (455)
T COG0534 315 RARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFI 394 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 56777777888888888888888889999999987766211112346888888999999999999999999999976665
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111 319 SNDSLLVFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYF 369 (449)
Q Consensus 319 ~~~~m~~~si~~l~~~~~l~~~-~G~~Gli~an~~nm~~ri~~s~~~i~~~~ 369 (449)
.+.. ....+.++..|++... +|..|+-++-.++..+|........++.-
T Consensus 395 ~~~~--~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 395 ISLL--SYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred HHHH--HHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5511 1112335555556655 89999999999999999888887776654
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.93 E-value=9.4e-06 Score=85.12 Aligned_cols=348 Identities=12% Similarity=0.040 Sum_probs=201.0
Q ss_pred ccCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhh-cccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHH
Q 013111 6 KCDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQ-GLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQ 78 (449)
Q Consensus 6 ~~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~-~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q 78 (449)
|+-|+.|.++-++....+. +++..|+++++....+. .+. .....||. ..-+++++++...-.+.......+|
T Consensus 75 q~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 153 (441)
T PRK10367 75 QAFGAKNPQALARALVQPLLLALGAGALIALLRTPLI-DLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLL 153 (441)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665444 77777776664432221 111 11122332 1335777777788888888878888
Q ss_pred hhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccC
Q 013111 79 NLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGN 154 (449)
Q Consensus 79 ~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v----~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~ 154 (449)
-.-+-|.-..+...+.++..+....+.... + +|+ ++..++|....+... ++.+ ..+..+..+.-+.++..
T Consensus 154 ~~G~~~~~~~~~ii~~~vni~l~~~lI~~~-~-lGv~Gaa~At~is~~~~~i~~~--~~~~--~~~~~~~~~~~~~~~~~ 227 (441)
T PRK10367 154 GVQYARAPVILLVVGNILNIVLDLWLVMGL-H-MNVQGAALATVIAEYATLLIGL--LMVR--KVLKLRGISLEMLKTAW 227 (441)
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHHHHc-C-CccHHHHHHHHHHHHHHHHHHH--HHHH--HHHhhccccHHHhhhhh
Confidence 877788777777777777777666554322 2 344 455555655322221 2221 11111100000011100
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCc
Q 013111 155 MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYP 234 (449)
Q Consensus 155 ~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~ 234 (449)
...+ |++++.+.....+.+...+-...-..+++++. .+..+.|++++|+.++..-. ..-+.++.-|.=++....++.
T Consensus 228 ~~~~-~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G-~~alAa~~I~~~i~~~~~~~-~~gl~~a~~~lvg~~~Ga~~~ 304 (441)
T PRK10367 228 RGNF-RRLLALNRDIMLRSLLLQLCFGAITVLGARLG-SDIIAVNAVLMTLLTFTAYA-LDGFAYAVEAHSGQAYGARDG 304 (441)
T ss_pred HHHH-HHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHcCCCH
Confidence 0012 67788888888888888777777778888765 46899999999988776533 336778888888888766544
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHH
Q 013111 235 QKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 314 (449)
Q Consensus 235 ~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~ 314 (449)
++.++..+..+++...++.+.........++++.+.-.|.-.-..+..++++.+...|..+++-...+.+.+..+..
T Consensus 305 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~ 381 (441)
T PRK10367 305 ---SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA 381 (441)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH
Confidence 44666667678888877777776667788888887642211111123566666654332224444455567777653
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013111 315 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 370 (449)
Q Consensus 315 ~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~ 370 (449)
+ -|..-.+..++... .+.....+|..|+-++-.+...+|........++..+
T Consensus 382 d-t~~~~~~~~~~~~~---~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~~~ 433 (441)
T PRK10367 382 E-MRNSMAVAAAGFAL---TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWR 433 (441)
T ss_pred H-HHHHHHHHHHHHHH---HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12222222222111 1112234688998888888888887766554444443
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.92 E-value=1.1e-05 Score=85.51 Aligned_cols=342 Identities=10% Similarity=-0.048 Sum_probs=199.1
Q ss_pred cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccC--Cchh-----HHHHHHHHHHHHHHHhhhHHHHHHH
Q 013111 7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSY--SNPY-----AQAIFINGFACVLELLAEPLYILSQ 78 (449)
Q Consensus 7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~--~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q 78 (449)
.-|+.+.++.++..+.+. +++.++++++++.....-....... .||. ..-+++..++.....+.......+|
T Consensus 95 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 174 (478)
T PRK10189 95 SLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALR 174 (478)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777766555 7777777776654333211111221 2332 1335667777777777777777777
Q ss_pred hhhhhhhHhHHHHHHHHHhHHHHHhHhhhc---ccchHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccc
Q 013111 79 NLLLLRLRLVVETVATFSRCFTMCILIVKQ---YEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR 151 (449)
Q Consensus 79 ~~l~f~~~~~~e~~a~~~~~v~~i~la~~~---~~~~~v----~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~ 151 (449)
-.-|-+.-..+...+.++..+....+.+.. ++ +|+ ++..++|....+.. .|+.+.+..+..+ ++.+
T Consensus 175 ~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~-lGv~Gaa~At~is~~~~~~~~--~~~~~~~~~~~~~----~~~~ 247 (478)
T PRK10189 175 GAGNTKIPLLINGGMNILNIIISSILIYGLFSWQG-LGFVGAGLGLTISRYIGAVAI--IWVLMIGFNPALR----ISLK 247 (478)
T ss_pred hcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCc-cchHHHHHHHHHHHHHHHHHH--HHHHHhccCccce----eeec
Confidence 777777777777777776666666554322 22 344 45555555432222 2222111010100 1100
Q ss_pred c---cCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 013111 152 L---GNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS 228 (449)
Q Consensus 152 ~---~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~ 228 (449)
. +.+....|++++.+.....+.+.-.+..-.-..+++++ +.+....|+++.|+.++..- ...-+.++.-+.=++.
T Consensus 248 ~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~-G~~~~Aa~~I~~~i~~~~~~-~~~gi~~A~~~lvg~~ 325 (478)
T PRK10189 248 SYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGM-GTSVIAGNFIAFSIAALINL-PGNALGSASTIITGTR 325 (478)
T ss_pred cccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 0 00111225677777665554443333322223334444 34678888888888877543 3446778888888887
Q ss_pred hcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013111 229 ASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLH 308 (449)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~ 308 (449)
...++. ++.++..+..++....++..+..+....++++..+...|.-.-..+...+.+.|++.|+.++|.+....+.
T Consensus 326 ~Ga~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lr 402 (478)
T PRK10189 326 LGKGQI---AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLK 402 (478)
T ss_pred hCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 765433 45666666677777777777666667788888887644321111233688888999999999999999999
Q ss_pred hhCCHHHHHHhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHH
Q 013111 309 AVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSA 362 (449)
Q Consensus 309 a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~ 362 (449)
+.++++.....+..- ..++.++..|++.. .+|..|+-++-.+...+|.....
T Consensus 403 g~G~t~~~~~i~~~~--~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~ 456 (478)
T PRK10189 403 GARDARYAMWVSMLG--MWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFY 456 (478)
T ss_pred cCCCchHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999998777666211 11222333333322 36888988888888877765433
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.68 E-value=1.7e-06 Score=90.76 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|++++++.....+++...+..-.|..+++++ +.++++.++.++++-.. .-.+..-+..+.-|.-|+...+++. ++
T Consensus 12 ~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~~---~~ 86 (456)
T PRK01766 12 RQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGRR---ER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh---HH
Confidence 7899999999999999999999999999996 55678888888877443 3344556788888999998766533 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 319 (449)
Q Consensus 240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~ 319 (449)
.++.+...++....++++..++....+++++.++..++-..+.+.+.++++++..|+.+++.+...++++.++++.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 66677778888888888888888888899988765443221223468999999999999999999999999999888877
Q ss_pred hhHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013111 320 NDSLLVFSVIYIVMNVILI------QSAGSVGLILANSLNMILRIIYSAIFI 365 (449)
Q Consensus 320 ~~~m~~~si~~l~~~~~l~------~~~G~~Gli~an~~nm~~ri~~s~~~i 365 (449)
+....+. -+...+.++ +.+|..|..++..+...+.......++
T Consensus 167 ~~i~~iv---ni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~ 215 (456)
T PRK01766 167 GFLGLLI---NIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYI 215 (456)
T ss_pred HHHHHHH---HHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7433333 333333343 235777887777666555544444444
No 20
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.63 E-value=4e-06 Score=84.02 Aligned_cols=191 Identities=21% Similarity=0.211 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 013111 169 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL 248 (449)
Q Consensus 169 ~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l 248 (449)
.+..++..++..-.|+++++++. .++.|.|+.++++.. +.+.+...+..+..|..++...++|. ++.++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~---~~~~~~~~~~~ 76 (342)
T TIGR00797 2 AILANILQPLLGLVDTAFVGHLG-PVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNY---QRLGRQAQQSL 76 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCCh---HHHHHHHHHHH
Confidence 35678889999999999999965 778999999988755 66777889999999999998765533 44566677788
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHH
Q 013111 249 KLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSV 328 (449)
Q Consensus 249 r~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si 328 (449)
+....+++++..+....++++..++..++=..+.+.+.++++++..|+..++....+.+++.++++.....+.... +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~---~ 153 (342)
T TIGR00797 77 LLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN---V 153 (342)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---H
Confidence 8889999888888889999998765433211122347899999999999999999999999999987776663222 3
Q ss_pred HHHHHHHHHHH-h---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 329 IYIVMNVILIQ-S---AGSVGLILANSLNMILRIIYSAIFIKH 367 (449)
Q Consensus 329 ~~l~~~~~l~~-~---~G~~Gli~an~~nm~~ri~~s~~~i~~ 367 (449)
+.+..++.+.. . +|..|..++..+.-.+.......+.++
T Consensus 154 ~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 154 INIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333443443 3 348888888877776666666666554
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.59 E-value=7.3e-06 Score=86.15 Aligned_cols=202 Identities=11% Similarity=0.007 Sum_probs=154.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111 158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 237 (449)
Q Consensus 158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~ 237 (449)
..|++++++.....++++..+.+=.|.+++|++.+.++.+.|++++++-.+..- +..=+....-+.-++...++|.
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~-~~~~~~~g~~~lvsq~~Ga~~~--- 85 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILG-IGLMVGMGTGSLLSIKRGEGDL--- 85 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHhcCCCH---
Confidence 458999999999999999999999999999999888889999988877665443 3334555555777887765533
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHH
Q 013111 238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 317 (449)
Q Consensus 238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~ 317 (449)
++.++.+++.+++...+++++.......+++++.+..++.-....+.++++++++..|+..++.....++++.++++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 45667788889999999998888888999999987644432222244799999999999999999999999999997666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 318 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK 366 (449)
Q Consensus 318 ~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~~~i~ 366 (449)
..+... .++-+...+.+.. .+|..|..+|..+...+.......++.
T Consensus 166 ~~~~~~---~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~ 213 (453)
T PRK09575 166 GLMVIG---ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFF 213 (453)
T ss_pred HHHHHH---HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655322 2444455555554 379999999999888888777776654
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.50 E-value=2e-05 Score=82.70 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|++++++.....++++..+.+=.|.+.+|++.+.++.+.+++++++-+...-. ..=+....-+.-+|...++ |.++
T Consensus 9 k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~---~~~~ 84 (441)
T PRK10367 9 KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAK---NPQA 84 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC---CHHH
Confidence 88999999999999999999999999999987777888899988876665433 3345666667777776554 3355
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 319 (449)
Q Consensus 240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~ 319 (449)
.++...+.+.+...++.+...++....+++++++..+.-....+.++++++++..|+..++....+++.+.++++.-...
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 66677778888888888888888888899888665443322334579999999999999999999999999999776655
Q ss_pred hhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 320 NDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK 366 (449)
Q Consensus 320 ~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~~~i~ 366 (449)
+... .++-+...+.++. .+|..|..+|..+...+.......+..
T Consensus 165 ~ii~---~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~ 210 (441)
T PRK10367 165 LVVG---NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR 210 (441)
T ss_pred HHHH---HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5322 2444455555543 368999999987776666555544443
No 23
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.35 E-value=6.1e-05 Score=79.37 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=156.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111 158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 237 (449)
Q Consensus 158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~ 237 (449)
..|++++++..+..++++..+++=.|.+.+|++. .++.+.=++++.+-.++--... =+.-..-+..||....+ |.
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~---~~ 89 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAG---DR 89 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCC---ch
Confidence 4489999999999999999999999999999999 6667766677655554443333 55666667777776544 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHH
Q 013111 238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 317 (449)
Q Consensus 238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~ 317 (449)
++.+++.++.+-+...++++....+...+++++.++.+++-..+.+.+++++.++-.|++.++-..++++.+.|+++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 55777788888889999989999999999999999887543444456899999999999999999999999999997766
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 318 RSNDSLLVFSVIYIVMNVILIQS----AGSVGLILANSLNMILRIIYSAIFIKHY 368 (449)
Q Consensus 318 ~~~~~m~~~si~~l~~~~~l~~~----~G~~Gli~an~~nm~~ri~~s~~~i~~~ 368 (449)
.... +..+.=+...++++.. +|..|..+|..++..+-......++.+.
T Consensus 170 ~~~~---~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~ 221 (455)
T COG0534 170 YILL---LGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRK 221 (455)
T ss_pred HHHH---HHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6553 3334445555555543 7899999999888877777776666543
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.34 E-value=0.00013 Score=76.91 Aligned_cols=192 Identities=13% Similarity=0.148 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHH
Q 013111 166 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 245 (449)
Q Consensus 166 ~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~ 245 (449)
+.+.+..+++..+..=.|..++++..++++.|.|+.+..+-++.......-+..+.-...+|...++ |+++.++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~---~~~~~~~~~~ 81 (488)
T TIGR02900 5 TFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKN---DRKNIKKILK 81 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcc---chhhHHHHHH
Confidence 4578888999999999999999999999999999999988777766655567777777777765443 3344556666
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHH
Q 013111 246 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV 325 (449)
Q Consensus 246 ~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~ 325 (449)
....+...+++++.......++.+...+.++. . ....+++++...|+.+++.+.++++++.++.+.....+.....
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDE---R-SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCh---h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 66666666666666666667777666554432 1 2357888889999999999999999999999887766643333
Q ss_pred HHHHHH-HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013111 326 FSVIYI-VMNVILI---QSAGSVGLILANSLNMILRIIYSAIF 364 (449)
Q Consensus 326 ~si~~l-~~~~~l~---~~~G~~Gli~an~~nm~~ri~~s~~~ 364 (449)
..+... ...+.+. ...|..|..+++.+...+-..+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~ 200 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFF 200 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1111111 12566666666655544444444333
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.34 E-value=0.00012 Score=77.46 Aligned_cols=196 Identities=11% Similarity=0.121 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHhhccCccch-hHHHHHhhhhhHHHHHHh-hhhhhhhHHHHHHHhcCCCchhhhHH
Q 013111 163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQ-AVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKI 240 (449)
Q Consensus 163 ~~~~~~~~~q~ilk~lltegdklii~~~~s~~~q-G~Y~la~nlgsl~ar~lf-~PIee~~~~~Fs~~~~~~~~~~~~~l 240 (449)
.+-+..++..+++..++.=.|.+++++..++++. |.|+.+.++-.+....+. .-+..+.-|...+..++ +++.
T Consensus 3 ~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~-----~~~~ 77 (502)
T TIGR01695 3 LKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKK-----EKEA 77 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh-----hhHH
Confidence 4556677888999999999999999999999999 999999887766554443 33555555555443321 1334
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcccchHHHHHHHccCCCCCC---chHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHH
Q 013111 241 GNSLAEALKLVLLI-GLVFMAFGPSYSYSLVRLLYGKKWSDG---EASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 316 (449)
Q Consensus 241 ~~~~~~~lr~~~~l-~~~~~~~g~~~s~~ll~lllG~kW~~~---~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l 316 (449)
++.+...+.....+ +++....+...++++..++ ++...++ .+.++++++++..|+.+++...++++++.++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLL-APGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIP 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHH
Confidence 44444434433333 3334455567777777754 3322232 14578999999999999999999999999998887
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHH
Q 013111 317 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLI--LANSLNMILRIIYSAIFIKH 367 (449)
Q Consensus 317 ~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli--~an~~nm~~ri~~s~~~i~~ 367 (449)
...+....+. .+...+.+...+|..|.+ ++..++..+...+...+.++
T Consensus 157 ~~~~i~~~i~---~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 157 SFSPILFNIG---VILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHHHHHH---HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666433322 222222234457888888 88877777776666655544
No 26
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.29 E-value=4.3e-05 Score=67.03 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013111 286 ALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFI 365 (449)
Q Consensus 286 lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i 365 (449)
++|++|+..+++.++......+++.+++++..+.+.... ++-+...+.+.+.+|..|.+++..+..........+.+
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~---~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA---IVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 378899989999999999999999999999988884333 44455555578889999999999999999999999999
Q ss_pred HHHhccCccccccccCCchHHHHHHHHHHHHHHhHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHH
Q 013111 366 KHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLD----RQDFWATFLIHFSVGLTCFCISSIVI 430 (449)
Q Consensus 366 ~~~~~~~~~~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~----~~~~~~~l~~~i~~G~~~~~~~~~~~ 430 (449)
+|.++.+ .+..++..++...+..+ ++..+..+....+ +.+.+.++...+.+|.+.|.......
T Consensus 78 ~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~ 144 (146)
T PF14667_consen 78 RKKIGIK-INWRRSLIKPILASIVM-AIVLYILNSLLPNIFPSRLSSLLQLLIGIIIGGIVYLLLLLLL 144 (146)
T ss_pred HHHhCCC-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988553 22233555554444444 3333333333311 12456677788888888888776543
No 27
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.25 E-value=0.0002 Score=75.96 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=147.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111 158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 237 (449)
Q Consensus 158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~ 237 (449)
+.|++++++.....++++..+..=.|.+.+|++ +.++.+.+++++++-.+. -.+..-+....-+.-++....+|.
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l-G~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~--- 101 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWL-GKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDR--- 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH---
Confidence 458899999999999999999999999999985 567899999999986553 344446777777888887766533
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcc--CCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHH
Q 013111 238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG--KKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ 315 (449)
Q Consensus 238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG--~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~ 315 (449)
++.++.....+.+...++++...+....+++++.++.| |.-....+.++++++++..|+..++....+++++.++++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 45666677788888888888888888899999988753 2211122347889999999999999999999999999987
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013111 316 LKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI 365 (449)
Q Consensus 316 l~~~~~~m~~~si~~l~~~~~l~~------~~G~~Gli~an~~nm~~ri~~s~~~i 365 (449)
-...+.... ++-+...+.+.. .+|..|..+|..+.-.+.......+.
T Consensus 182 ~~~i~~~~~---~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~ 234 (478)
T PRK10189 182 PLLINGGMN---ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL 234 (478)
T ss_pred hHHHHHHHH---HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 776663322 222233333332 36889999988776666655544443
No 28
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.23 E-value=6.2e-05 Score=79.43 Aligned_cols=185 Identities=16% Similarity=0.060 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|++++++.....+++...+..=.|.+.+|++ +.++++.+++++.+-++.. .+..-+....-+.-+|...+++. ++
T Consensus 10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~---~~ 84 (464)
T PRK00187 10 KAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDI---EG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh---hh
Confidence 8899999999999999999999999999996 6678999999998877654 44456777888888888766533 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 319 (449)
Q Consensus 240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~ 319 (449)
.++.+...+.+...++.+...... .+++++++...|.-.-..+.+.++++++..|+..++.....++++.++++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 667777778887777777666544 5788888653332111223478999999999999999999999999999877666
Q ss_pred hhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHH
Q 013111 320 NDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLN 353 (449)
Q Consensus 320 ~~~m~~~si~~l~~~~~l~~------~~G~~Gli~an~~n 353 (449)
+.... ++-++..|.++. .+|..|..+|..+.
T Consensus 164 ~~~~~---~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~ 200 (464)
T PRK00187 164 SLAGA---VANLLLNYALIEGWFGLPKLGLMGIGLVTALV 200 (464)
T ss_pred HHHHH---HHHHHHHHHHHcCCCCCccccccchHHHHHHH
Confidence 64333 333444444442 25788888887543
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=97.91 E-value=0.0014 Score=67.96 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHH
Q 013111 163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 242 (449)
Q Consensus 163 ~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~ 242 (449)
.+-..+.....+++.+.+=.-.-+++++.++++.|.++...++-++..-....-+.++.-...+|. + +|+++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~---~~~~~~~~ 78 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--H---DQPQQLRA 78 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--C---CCHHHHHH
Confidence 344456666777777777777789999999999999999988777666555555555544444443 1 33345566
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhH
Q 013111 243 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDS 322 (449)
Q Consensus 243 ~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~ 322 (449)
.+...+.+....+++....+...++++...++++. +...++.+.++..+...++...++..++.++++.-...+..
T Consensus 79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT----DYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777788888887776554 23356666666666777777788888877766654444433
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 323 LLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIK 366 (449)
Q Consensus 323 m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~ 366 (449)
..+..+.. ........|..|.++|..+.-.+-..+...++.
T Consensus 155 ~~~~~i~l---~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~ 195 (416)
T PRK15099 155 GSLIGVAA---YYLCYRLGGYEGALLGLALVPALVVLPAGIMLI 195 (416)
T ss_pred HHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 111122248899999887766555555554443
No 30
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.80 E-value=0.02 Score=60.30 Aligned_cols=168 Identities=14% Similarity=0.199 Sum_probs=112.8
Q ss_pred CccchhHHHHHhhhhhHHHHHHh-hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 013111 192 TPYNQAVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLV 270 (449)
Q Consensus 192 s~~~qG~Y~la~nlgsl~ar~lf-~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll 270 (449)
+.++--.|.+|.++-.++.+.+. ..+..+.-|.|++.. ++++++.++ -...++.....+++.+...+...+++++
T Consensus 7 ~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~---f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 7 ASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARR---FISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566689999999999988886 689999999999998 443444333 3445677777777777777788999999
Q ss_pred HHHccCCCCCCc---hHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hH
Q 013111 271 RLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG---SV 344 (449)
Q Consensus 271 ~lllG~kW~~~~---~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G---~~ 344 (449)
+++.+. ..++. +..++++..+++++..++++..+..++..+-..-.-.+.... +..+...+.+....| ..
T Consensus 83 ~~la~g-~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N---~~~I~~~~~~~~~~~~~~i~ 158 (451)
T PF03023_consen 83 RLLAPG-FSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN---LSIILSLLLLSNSWGQENIY 158 (451)
T ss_pred HHHCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH---HHHHHHHHHHHHhcCchHHH
Confidence 876644 43331 235778888899999999999999998876544333332222 222222222344456 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013111 345 GLILANSLNMILRIIYSAIFIKH 367 (449)
Q Consensus 345 Gli~an~~nm~~ri~~s~~~i~~ 367 (449)
++.++..+...++..+-....+|
T Consensus 159 ~la~g~~~g~~~~~l~~l~~~~~ 181 (451)
T PF03023_consen 159 ALAWGVLIGAIIQFLIQLPYLRR 181 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555555444
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.55 E-value=6.3e-05 Score=66.90 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 013111 169 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL 248 (449)
Q Consensus 169 ~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l 248 (449)
...++++..+....|..+++++ +.++.+.|+++.++.++..- +..-+.+..-+.-++...++|.++ .++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~~~~---~~~~~~~~~ 76 (162)
T PF01554_consen 2 IALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGDYKR---AKKVVRQGL 76 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSSTTT---CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh-hcccccccccceeecccccccccc---ccccccccc
Confidence 3567888899999999999999 99999999999999988766 555888998888888876654444 555577789
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhh
Q 013111 249 KLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 320 (449)
Q Consensus 249 r~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~ 320 (449)
++...++++...+....+++++.+...++-....+.+.+++.++..|+.+++....+++++.++++.....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 148 (162)
T PF01554_consen 77 LLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYIS 148 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHH
T ss_pred ccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 999999999888888888888877555543333345788888889999999999999999999997665555
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.54 E-value=0.021 Score=54.05 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=99.6
Q ss_pred HhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013111 184 KLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGP 263 (449)
Q Consensus 184 klii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~ 263 (449)
..+++|..+++|.|.|+.+.+..++........+++...- ..+ +|+++.++.....+.....++.....+.+
T Consensus 8 ~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 8 LILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAA---RDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999888766566555432 111 22223333333333333333333332222
Q ss_pred cchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Q 013111 264 SYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGS 343 (449)
Q Consensus 264 ~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~ 343 (449)
..+. +.++ ++..+++...+...+..+++........+..+.+.....+..............+... .+.
T Consensus 80 ~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 148 (251)
T PF13440_consen 80 LIAY-----FFGD----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLG--LNL 148 (251)
T ss_pred HHHH-----HhCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--hhH
Confidence 2222 2322 2223466777778889999988988899998888766666433333322222211111 367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111 344 VGLILANSLNMILRIIYSAIFIKHYF 369 (449)
Q Consensus 344 ~Gli~an~~nm~~ri~~s~~~i~~~~ 369 (449)
.+.+++.++.......+.....++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRKL 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77888887777776777777655444
No 33
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.34 E-value=0.15 Score=48.41 Aligned_cols=187 Identities=13% Similarity=0.170 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHH
Q 013111 166 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 245 (449)
Q Consensus 166 ~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~ 245 (449)
..+.+..+++..+..=.-..+++|..+++|.|.|+.+.++.++..-...--++++.--..++..++ +++.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~-----~~~~~~~~~ 79 (273)
T PF01943_consen 5 SLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK-----KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----HHHHHHHHH
Confidence 344555666666777677889999999999999999999999888777777777776666665422 111222222
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHH-HHHHhhhhHHHHHHhhCCHHHHHHhhhHHH
Q 013111 246 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV-VVLAMNGTSEAFLHAVATEDQLKRSNDSLL 324 (449)
Q Consensus 246 ~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi-~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~ 324 (449)
..+. ...++..+..+....+ .....+++. ....+++... ++..++...+.+.++..+.+.....+ +
T Consensus 80 ~~~~-~~~~~~~i~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 146 (273)
T PF01943_consen 80 SVLF-LLLIFSLIFLLILLIA----SFFGNPSLS-----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISN---I 146 (273)
T ss_pred HHHH-HHHHHHHHHHHHHHHH----HHcCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 2222 2222222222222111 122222221 2333333322 46777777777777764443333333 2
Q ss_pred HHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013111 325 VFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYFQ 370 (449)
Q Consensus 325 ~~si~~l~~~~~l~~~-~G~~Gli~an~~nm~~ri~~s~~~i~~~~~ 370 (449)
...+........+... .+..+.+.+..+...+...++..+.++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T PF01943_consen 147 ISSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR 193 (273)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2333333333323322 347788888888888877788888776653
No 34
>PRK10459 colanic acid exporter; Provisional
Probab=97.26 E-value=0.029 Score=59.38 Aligned_cols=182 Identities=14% Similarity=0.078 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHH
Q 013111 161 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240 (449)
Q Consensus 161 ~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l 240 (449)
+..+=..|.+..++..++..=.-..+++|..+++|.|.|+.+..+-++..-.....++++. .| +++ +++++.
T Consensus 6 ~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~---~~~-~~~~~~ 77 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQ---RQD-ISHLQL 77 (492)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hh---ccc-CCHHHH
Confidence 3444445566677777777777888999999999999999999988877776666666643 12 221 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhh
Q 013111 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 320 (449)
Q Consensus 241 ~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~ 320 (449)
... .......++.........++++- .++++. +..+++.+.++..++..++....+..+...+-+.....+
T Consensus 78 ~~~----~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 78 STL----YWLNVGLGIVVFVLVFLLSPLIA-DFYHNP----ELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHH-HHcCCh----hhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 222 22333344433333334444443 344432 233577777777777777666666666555544444433
Q ss_pred hHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHH
Q 013111 321 DSLLVFSVIYIVMNVIL-IQSAGSVGLILANSLNMILRIIYSA 362 (449)
Q Consensus 321 ~~m~~~si~~l~~~~~l-~~~~G~~Gli~an~~nm~~ri~~s~ 362 (449)
... .+........+ ...+|.+|+++++.+.-.+......
T Consensus 149 ~~~---~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 188 (492)
T PRK10459 149 ISA---VVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFG 188 (492)
T ss_pred HHH---HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 222 22222222211 2236888999988877666544333
No 35
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=95.87 E-value=3.2 Score=44.46 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCc-cchhHHHHHhhhhhHHHHHHhhhh-hhhhHHHHHHHhcCCCchhh
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-YNQAVYGLVDKLGSLVVRMVFLPF-EESSYATFARSASGQYPQKS 237 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~-~~qG~Y~la~nlgsl~ar~lf~PI-ee~~~~~Fs~~~~~~~~~~~ 237 (449)
+++++-+..+....++..++==....+++..++. ..--.|.+|.++-.+.-|..-... +++.-|.|.|..+++++++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 5567777777777777777766677788888866 667789999999999999888766 78888999998865533332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCc---hHHHHHHHHHHHHHHHhhhhHHHHHHhhC
Q 013111 238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVA 311 (449)
Q Consensus 238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~---~~~lL~~yc~yi~~la~Ngi~eaf~~a~~ 311 (449)
++.++. ..-....+.+.+...+...++.+++.+.++.|.+++ +..+.++.-.|++++.+-....+.+|+..
T Consensus 87 ~~f~~~---v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~ 160 (518)
T COG0728 87 RFFSRL---VTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRN 160 (518)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 333222 233555555566666667888888899999873322 23456777778888888777766666544
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=95.49 E-value=3.7 Score=43.05 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
++..+=..+.+..++.+.++.=.-..+++|..+++|.|.|+.+...-++.......=++++.--.-++..+++ +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~---~~~~ 82 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKG---EYLL 82 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhccc---HHHH
Confidence 4455556667777778888888889999999999999999999999988888775555554443333333221 1111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111 240 IGNS-LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 318 (449)
Q Consensus 240 l~~~-~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~ 318 (449)
.... ....+.....++.+...... ....+ +++....+++.+.+.++........+..++..+-+....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAY----------LLAPI-DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL 151 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------Hhccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 1111 12122222222222211111 11111 222346788888888888888888777777766544333
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013111 319 SNDSL-LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSA 362 (449)
Q Consensus 319 ~~~~m-~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~ 362 (449)
....- ......+.... .....+.++.+.+..........+-.
T Consensus 152 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (480)
T COG2244 152 SIVSSIFLLAAVFALLF--AALGLAVWALVLGAVVSLLVLLILLG 194 (480)
T ss_pred HHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 32111 11111111111 01125677777777776666555443
No 37
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=85.10 E-value=47 Score=35.36 Aligned_cols=185 Identities=18% Similarity=0.114 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|+++.++.......+.+....-.+...+|+..+. +....+++++......+.+..=+..+.=+..+|.-..++- +.
T Consensus 28 k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~---~~ 103 (473)
T KOG1347|consen 28 KELARLALPAILTFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF---TA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch-HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc---ch
Confidence 7789999999999999999999999999999999 9999999998887765655555555555555555432211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHH----HHHHHHhhhhHHHHHHhhCCHHH
Q 013111 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCL----YVVVLAMNGTSEAFLHAVATEDQ 315 (449)
Q Consensus 240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~----yi~~la~Ngi~eaf~~a~~~~~~ 315 (449)
+.....+..-.....++ .......++++++..+..+.=.+ ..-+.|+. .++-.+++-.++.|.++.+....
T Consensus 104 lg~~lqrs~~~l~~~~~-~~~~l~~~~~~il~~lgq~~~i~----~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~ 178 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGL-PISLLILNSEPILLLLGQDPDIS----RDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLP 178 (473)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHhCCChhHH----HHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchH
Confidence 22221111111111222 22233356678877666554333 34444443 33444455555556664443322
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHH
Q 013111 316 LKRSNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMIL 356 (449)
Q Consensus 316 l~~~~~~m~~~si~~l~~~~~l~~~--~G~~Gli~an~~nm~~ 356 (449)
+.-. -.......+..+|.+... +|..|..++..++--.
T Consensus 179 ~~~~---~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~ 218 (473)
T KOG1347|consen 179 LLVI---GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWL 218 (473)
T ss_pred HHHH---HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHH
Confidence 2222 223336677788877654 5766766666554433
No 38
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=43.27 E-value=32 Score=29.79 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=46.6
Q ss_pred CcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCch----h-HHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 013111 9 GASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNP----Y-AQAIFINGFACVLELLAEPLYILSQNLLL 82 (449)
Q Consensus 9 ~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~----y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~ 82 (449)
|+.+.++.++..+.+. +++.+|++++++...+.-+....+..|| . ..-++..+++.....+.+.....+|-.-+
T Consensus 61 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 140 (162)
T PF01554_consen 61 GAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGR 140 (162)
T ss_dssp CSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCST
T ss_pred ccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCc
Confidence 3344444444544444 8888888887765544322223333343 2 23456667777777766666555555555
Q ss_pred hhhHhHHHHHHH
Q 013111 83 LRLRLVVETVAT 94 (449)
Q Consensus 83 f~~~~~~e~~a~ 94 (449)
.|.-...+..+.
T Consensus 141 ~~~~~~~~~~~~ 152 (162)
T PF01554_consen 141 TKIAMYISIISF 152 (162)
T ss_dssp HCCCHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444444
No 39
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=41.02 E-value=1.5e+02 Score=25.73 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 013111 411 TFLIHFSVGLTCFCISSIVIYHRERS 436 (449)
Q Consensus 411 ~l~~~i~~G~~~~~~~~~~~~~~e~~ 436 (449)
-+..|+....++.-..++.+...-+.
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~ 102 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRG 102 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35678888887777777766655554
No 40
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=33.71 E-value=1.6e+02 Score=29.89 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHhHhHHHHHHHHHHHH--HHHHhhcccCCchhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh
Q 013111 12 REENAAKLLKVAWLTLPLGIFITIGACF--FVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLR 84 (449)
Q Consensus 12 ~~~~~~~~~n~~wl~i~~g~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~ 84 (449)
+++.|....+..|-.+.++.++.++... .| +..+....+.-..++.+...-.++..+..=...+.+|++.|+
T Consensus 188 ~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY-~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA~~ 261 (340)
T PF12794_consen 188 KPDSWIHRLRYLWWPLLILAPLALIVLALLGY-YYTALQLLERLILSLYLLLGWLLVYQLILRWLLVARRRLAYE 261 (340)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888666666666654422 22 222323233335677888888888888888888888888775
No 41
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.44 E-value=2.4e+02 Score=23.03 Aligned_cols=56 Identities=11% Similarity=-0.096 Sum_probs=37.0
Q ss_pred HHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHH
Q 013111 66 LELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFL 130 (449)
Q Consensus 66 ie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~ 130 (449)
+|.+-+|+. .++..+||.-+=++|=...++=.+.+++- -+++|+.+|+.+.+....
T Consensus 2 ~~~l~~~~~-kL~~~iDf~gQkkaEr~~q~ilti~aiVg--------~i~Gf~~Qqls~tvy~vg 57 (101)
T KOG4112|consen 2 SEILQDVQR-KLVFPIDFPGQKKAERFQQLILTIGAIVG--------FIYGFAQQQLSVTVYIVG 57 (101)
T ss_pred hhHHHHHHH-hCCCcccCcchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 355556653 35667899999999977666544444331 256788888887766544
No 42
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=23.08 E-value=6.6e+02 Score=23.92 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111 341 AGSVGLILANSLNMILRIIYSAIFIKHYF 369 (449)
Q Consensus 341 ~G~~Gli~an~~nm~~ri~~s~~~i~~~~ 369 (449)
.|.++..-+|++||..--..+.+++.|..
T Consensus 100 ~GGi~~LG~N~l~ma~v~~~~~y~i~r~l 128 (230)
T PRK11909 100 DGGITAIGANCFNMAFVLPFVGYYVYKLL 128 (230)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788999999887666666666654
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=21.96 E-value=4.7e+02 Score=21.83 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHH
Q 013111 57 IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASL 128 (449)
Q Consensus 57 ~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~ 128 (449)
+.+++++.+...+..|.....|-.-+-|...+....+.+++.+..+.+. +. +|..+-+++.....++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li---~~-~G~~Gaa~a~~i~~~~~ 69 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI---PR-FGIYGAAIATAISEIVS 69 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH---HH-HHHhHHHHHHHHHHHHH
Confidence 4678899999999999998899888888888888888888888887764 22 45555555555544343
No 44
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=21.86 E-value=1.2e+03 Score=26.43 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhccCcc---------ccccccCCchHHHHHHHHHHHHHHhHHhccccchHHHHHHHHHHHHH
Q 013111 355 ILRIIYSAIFIKHYFQGSSS---------FSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLT 421 (449)
Q Consensus 355 ~~ri~~s~~~i~~~~~~~~~---------~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~ 421 (449)
++-+-|+.++++|++....+ +.+++..|+.+.+.+. .++...+-.. ...+....+.+...+|+.
T Consensus 261 giGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lT-T~~GF~Sl~~--s~i~~i~~~Gi~~siGi~ 333 (727)
T COG1033 261 GIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALT-TAAGFLSLLT--SSIPAIKEFGILLSIGII 333 (727)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHH-HHHHHHHHHH--cccHHHHHHHHHHHHHHH
Confidence 45588999999999965322 2367778876655433 2233322221 123444555555555554
Done!