Query 013111
Match_columns 449
No_of_seqs 167 out of 323
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 1.1E-16 3.6E-21 164.8 32.0 353 9-370 80-448 (460)
2 3mkt_A Multi antimicrobial ext 98.7 3.3E-08 1.1E-12 101.1 9.8 201 159-368 11-217 (460)
3 2knc_B Integrin beta-3; transm 5.5 9.1E+02 0.031 17.7 5.0 25 417-441 23-47 (79)
4 3arc_Z Photosystem II reaction 5.3 2.9E+02 0.0099 19.7 1.7 33 273-306 28-60 (62)
5 2ajj_A NS5A, nonstructural pro 4.7 6.4E+02 0.022 15.0 2.6 19 171-189 9-27 (28)
6 3ogl_Q JAZ1 incomplete degron 3.7 6.5E+02 0.022 13.9 1.9 16 433-448 5-20 (21)
7 1s4x_A Integrin beta-3; cell a 3.2 6.5E+02 0.022 18.1 2.2 31 415-445 9-39 (67)
8 4hkr_A Calcium release-activat 3.1 2.3E+03 0.077 18.9 8.0 32 14-45 106-138 (214)
9 2jpj_A Bacteriocin lactococcin 3.0 1.1E+03 0.036 14.8 3.3 31 417-447 9-39 (39)
10 2yiu_B Cytochrome C1, heme pro 2.4 1.7E+03 0.057 20.4 4.5 36 301-336 210-247 (263)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.79 E-value=1.1e-16 Score=164.82 Aligned_cols=353 Identities=13% Similarity=0.029 Sum_probs=254.1
Q ss_pred CcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 013111 9 GASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLL 82 (449)
Q Consensus 9 ~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~~l~ 82 (449)
+..|+++-++..+.+. +.+.++++++++ ..+.-........+|. ..-+++++.+.....+.......+|-.-+
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 158 (460)
T 3mkt_A 80 GAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL 158 (460)
T ss_dssp SSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSC
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344445556666665 777777776654 2222121222223332 13357788888888888888888888889
Q ss_pred hhhHhHHHHHHHHHhHHHHHhHhhh-c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCccccc
Q 013111 83 LRLRLVVETVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYD 159 (449)
Q Consensus 83 f~~~~~~e~~a~~~~~v~~i~la~~-~--~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (449)
+|.-......+.+++.+..+.+... . ++ +++.+.+++.....+...+..+.+..+++..+..+..+...+.+...-
T Consensus 159 ~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (460)
T 3mkt_A 159 TKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL 237 (460)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSST
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHH
Confidence 9999999999999988888776632 1 13 566666666666555544443433333222111111011001111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|++++++.+.+.+++...+..+.|+.+++++ +.++.|.|++++++.+++. .+...+..+..|..++...++|.++
T Consensus 238 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~--- 312 (460)
T 3mkt_A 238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKG--- 312 (460)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCT---
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHH---
Confidence 8899999999999999999999999999999 8899999999999999988 6667999999999999987765554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 319 (449)
Q Consensus 240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~ 319 (449)
.++.+++.++....+++++..+....+++++.++.+|+.....+.+++++++...++.+++.+.+..+++.++++.....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44457778899999999988888899999999888776543335689999999999999999999999999999877776
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013111 320 NDSLLVFSVIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKHYFQ 370 (449)
Q Consensus 320 ~~~m~~~si~~l~~~~~l~~~-------~G~~Gli~an~~nm~~ri~~s~~~i~~~~~ 370 (449)
+..-. .++.++..+.+... +|..|..++..+...++.....+..+|..+
T Consensus 393 ~~~~~--~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 393 TFISY--WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHHH--HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63211 14445666667777 899999999999999888777666655543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.70 E-value=3.3e-08 Score=101.14 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhh
Q 013111 159 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 238 (449)
Q Consensus 159 ~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~ 238 (449)
.|++++++..+..+++...+++-.|..++++ .++++.|.|+.++++..+ ...+...+.....|..++...++|+ +
T Consensus 11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~---~ 85 (460)
T 3mkt_A 11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQ---H 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSST---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCh---h
Confidence 3889999999999999999999999999999 789999999999999554 4555667888888888887655433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111 239 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 318 (449)
Q Consensus 239 ~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~ 318 (449)
+.++.+...+.....+++++... ...+++++.++.++.-....+.+++++++...|+..++....+++++.++++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 45556666777777777775543 56677776644333211112336788888899999999999999999999976665
Q ss_pred hhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111 319 SNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFIKHY 368 (449)
Q Consensus 319 ~~~~m~~~si~~l~~~~~l~~------~~G~~Gli~an~~nm~~ri~~s~~~i~~~ 368 (449)
.+.... ++-+...+.+.. .+|..|.+++..+...+.......+..+.
T Consensus 165 ~~~~~~---~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 165 IGFIGL---LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHH---HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH---HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 553322 333444455554 37999999999888777777776666554
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.54 E-value=9.1e+02 Score=17.75 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 013111 417 SVGLTCFCISSIVIYHRERSFIYKI 441 (449)
Q Consensus 417 ~~G~~~~~~~~~~~~~~e~~~l~~~ 441 (449)
++|++++++.-++...+++.-..++
T Consensus 23 liGllllliwk~~~~i~DrrE~~kF 47 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKF 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333444444444443
No 4
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=5.28 E-value=2.9e+02 Score=19.74 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=22.9
Q ss_pred HccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHH
Q 013111 273 LYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAF 306 (449)
Q Consensus 273 llG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf 306 (449)
.-.+.|.++. ..++.--..++.+--++|+...|
T Consensus 28 Asp~~W~~sK-~~v~~g~~lW~~LV~lvgilnsf 60 (62)
T 3arc_Z 28 ASPQDWDRSK-QLIFLGSGLWIALVLVVGVLNFF 60 (62)
T ss_dssp HCSSCHHHHH-HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ECCcchhhhh-ceeeeHHHHHHHHHHHHHHHHhh
Confidence 3458898864 35777767778777778877544
No 5
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=4.74 E-value=6.4e+02 Score=14.96 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhHhhHhh
Q 013111 171 FQSFRKLLLQEGEKLVLVW 189 (449)
Q Consensus 171 ~q~ilk~lltegdklii~~ 189 (449)
.+++=|++.....|+++|.
T Consensus 9 l~~lh~~~~~~ikk~~lgW 27 (28)
T 2ajj_A 9 IYSLHKQINRGLKKIVLGW 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4677788888888888874
No 6
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=3.70 E-value=6.5e+02 Score=13.92 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHhhcCC
Q 013111 433 RERSFIYKIIRFRNHK 448 (449)
Q Consensus 433 ~e~~~l~~~~~~~~~~ 448 (449)
..+.-++.++.|||+|
T Consensus 5 aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDR 20 (26)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3455677777777665
No 7
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=3.17 E-value=6.5e+02 Score=18.10 Aligned_cols=31 Identities=19% Similarity=-0.008 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 013111 415 HFSVGLTCFCISSIVIYHRERSFIYKIIRFR 445 (449)
Q Consensus 415 ~i~~G~~~~~~~~~~~~~~e~~~l~~~~~~~ 445 (449)
|-++|++++++.=+++...++.-..++-+.|
T Consensus 9 ~~liGl~lLliwKll~~i~DrrEyakFE~Er 39 (67)
T 1s4x_A 9 HSSGLVPRGSHMKLLITIHDRKEFAKFEEER 39 (67)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677887777766666666666666555444
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=3.13 E-value=2.3e+03 Score=18.86 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=22.9
Q ss_pred hhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhh
Q 013111 14 ENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQ 45 (449)
Q Consensus 14 ~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~ 45 (449)
+.+...+..+| .+..+|+++-++-.....|..
T Consensus 106 ~r~~~yIE~AW~fST~lGi~LFL~evall~WVK 138 (214)
T 4hkr_A 106 ERLHWYIETAWAFSTLLGLILFLLEIAILCWVK 138 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEE
Confidence 44888999999 999999888766443333433
No 9
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=3.02 E-value=1.1e+03 Score=14.76 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Q 013111 417 SVGLTCFCISSIVIYHRERSFIYKIIRFRNH 447 (449)
Q Consensus 417 ~~G~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 447 (449)
.+|=..|-+.--+-...+...-.++-+||+|
T Consensus 9 ~vg~aaywv~k~lgnmsdvnqa~rinrkkkh 39 (39)
T 2jpj_A 9 GIGRVAYWVGKALGNLSDVNQASRINRKKKH 39 (39)
T ss_dssp HHHHHHHHHHHHHTSCSHHHHHHHHHGGGCC
T ss_pred cchHHHHHHHHHhcchhhhhHHHHhhhhccC
Confidence 3444444444334444555555666677776
No 10
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=2.39 E-value=1.7e+03 Score=20.42 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=21.3
Q ss_pred hhHHHHHHhhCCHHHHHHhh--hHHHHHHHHHHHHHHH
Q 013111 301 GTSEAFLHAVATEDQLKRSN--DSLLVFSVIYIVMNVI 336 (449)
Q Consensus 301 gi~eaf~~a~~~~~~l~~~~--~~m~~~si~~l~~~~~ 336 (449)
.-+-+|++-++.|+...|.. .+.+++.+++.++.|.
T Consensus 210 ~DVvaFL~waaEP~~~~Rk~lG~~vl~fL~il~~l~y~ 247 (263)
T 2yiu_B 210 TDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYL 247 (263)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888766543 4444444444444444
Done!