Query 013111
Match_columns 449
No_of_seqs 167 out of 323
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 04:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013111.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013111hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90n_ f.23.27.1 (N:) PetN su 5.0 2.9E+02 0.021 15.0 3.1 12 18-29 4-15 (31)
2 d1pfva1 a.27.1.1 (A:389-550) M 4.0 4.3E+02 0.031 19.8 4.4 39 238-276 83-121 (162)
3 d2bl8a1 a.29.8.2 (A:4-103) Ent 3.6 6.1E+02 0.045 17.9 4.4 40 214-253 21-60 (100)
4 d1eg3a2 a.39.1.7 (A:210-306) D 3.2 6E+02 0.044 17.8 4.0 40 217-256 2-41 (97)
5 d1jb0x_ f.23.20.1 (X:) Subunit 3.2 4.1E+02 0.03 14.0 2.7 19 293-311 10-28 (29)
6 d2d5ba1 a.27.1.1 (A:349-500) M 2.9 5.4E+02 0.04 18.8 3.9 39 236-274 82-120 (152)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 2.9 7.6E+02 0.055 16.6 5.5 10 438-447 94-103 (103)
8 d2axtz1 f.17.5.1 (Z:1-62) Phot 2.2 8.3E+02 0.06 15.6 6.4 51 255-307 11-61 (62)
9 d3cx5d2 f.23.11.1 (D:261-307) 2.2 7.3E+02 0.053 14.9 3.7 20 316-335 6-26 (47)
10 d2e74d2 f.23.12.1 (D:12-45) IS 2.2 6.2E+02 0.045 13.9 3.2 19 17-35 5-23 (34)
No 1
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.97 E-value=2.9e+02 Score=15.03 Aligned_cols=12 Identities=8% Similarity=0.564 Sum_probs=7.8
Q ss_pred HHHHHHHhHhHH
Q 013111 18 KLLKVAWLTLPL 29 (449)
Q Consensus 18 ~~~n~~wl~i~~ 29 (449)
-++|.+|-.+..
T Consensus 4 ~iv~~awaa~~a 15 (31)
T d1q90n_ 4 AIVQIGWAATCV 15 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEEhHHHHHHH
Confidence 368899954433
No 2
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=4.3e+02 Score=19.78 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC
Q 013111 238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK 276 (449)
Q Consensus 238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~ 276 (449)
+++...+...+...-.++..+-||.|-.|.-+...+.-+
T Consensus 83 ~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~ 121 (162)
T d1pfva1 83 ADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 121 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC
Confidence 456667777888888888888899999999998876543
No 3
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=3.61 E-value=6.1e+02 Score=17.90 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=22.9
Q ss_pred hhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHH
Q 013111 214 FLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 253 (449)
Q Consensus 214 f~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~ 253 (449)
..||+++.--...|+-+.+..++++.+.+.+-.+++..+.
T Consensus 21 y~dI~dvL~~V~~K~d~~k~~~~p~al~nrLV~YI~~~a~ 60 (100)
T d2bl8a1 21 YSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFTAY 60 (100)
T ss_dssp GHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHH
Confidence 4489999999998886544334566665555555555544
No 4
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.19 E-value=6e+02 Score=17.81 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHH
Q 013111 217 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGL 256 (449)
Q Consensus 217 Iee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~ 256 (449)
+||-.+-.|+++.+.+..-+.+++...++..+++-..+|=
T Consensus 2 L~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE 41 (97)
T d1eg3a2 2 LEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGE 41 (97)
T ss_dssp HHHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCc
Confidence 4666777888886544444556777778888887776654
No 5
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=3.18 E-value=4.1e+02 Score=14.02 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=13.1
Q ss_pred HHHHHHhhhhHHHHHHhhC
Q 013111 293 YVVVLAMNGTSEAFLHAVA 311 (449)
Q Consensus 293 yi~~la~Ngi~eaf~~a~~ 311 (449)
...++++|-+..++..+.+
T Consensus 10 a~lllainflvaayyfaaa 28 (29)
T d1jb0x_ 10 AVLLLAINFLVAAYYFAAA 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3557788888877766543
No 6
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=2.92 E-value=5.4e+02 Score=18.82 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHc
Q 013111 236 KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 274 (449)
Q Consensus 236 ~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lll 274 (449)
+.++.+.++...+...-.++..+-++.|-.|..+...+.
T Consensus 82 d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg 120 (152)
T d2d5ba1 82 EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALG 120 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcC
Confidence 335566667767777777888888888999999888764
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.88 E-value=7.6e+02 Score=16.63 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=5.2
Q ss_pred HHHHHHhhcC
Q 013111 438 IYKIIRFRNH 447 (449)
Q Consensus 438 l~~~~~~~~~ 447 (449)
..+..++|+|
T Consensus 94 ~~~~~~rr~h 103 (103)
T d1r3jc_ 94 VGREQERRGH 103 (103)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 3334455676
No 8
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.25 E-value=8.3e+02 Score=15.58 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=32.1
Q ss_pred HHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHH
Q 013111 255 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFL 307 (449)
Q Consensus 255 ~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~ 307 (449)
+++++.|....+-|.+ ..-.+.|.+++ ..+++=-..++.+--++|+...|+
T Consensus 11 ALi~~SF~lVVgVPV~-~ASP~gW~~sK-~lvfsG~~~W~~LV~lvgilNsfV 61 (62)
T d2axtz1 11 ALVILSFVMVIGVPVA-YASPQDWDRSK-QLIFLGSGLWIALVLVVGVLNFFV 61 (62)
T ss_dssp HHHHHHHHHHHHHHHH-HHCCTTTTHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHheeceEE-EECCCcccccC-ceEEEchhHHHHHHHHHHhhheee
Confidence 3333334344444443 35678899875 356666667888888888887664
No 9
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.23 E-value=7.3e+02 Score=14.92 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=9.4
Q ss_pred HHHhh-hHHHHHHHHHHHHHH
Q 013111 316 LKRSN-DSLLVFSVIYIVMNV 335 (449)
Q Consensus 316 l~~~~-~~m~~~si~~l~~~~ 335 (449)
=.+.+ +.++++++++..+.|
T Consensus 6 RK~mg~K~~~i~s~l~~~~~y 26 (47)
T d3cx5d2 6 RKRLGLKTVIILSSLYLLSIW 26 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33444 445555555544433
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.18 E-value=6.2e+02 Score=13.90 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHhHhHHHHHHHH
Q 013111 17 AKLLKVAWLTLPLGIFITI 35 (449)
Q Consensus 17 ~~~~n~~wl~i~~g~~~~~ 35 (449)
+|..|+.|....-|..+..
T Consensus 5 rqfmnlltfgt~tg~alg~ 23 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGA 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhh
Confidence 5789999987666665543
Done!