BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013112
         (449 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
          Length = 485

 Score = 31.6 bits (70), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 109 LHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENE---TNGYIFIHAEGGLNQ 165
           LH   ++ A  L E   S + +  P  E + G +S   P N    T+G IF+ AE     
Sbjct: 278 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 337

Query: 166 QRIAICNAVAVAKIMNATLILPVLKQ 191
            R AI   ++V+++ +A  +   LKQ
Sbjct: 338 IRPAINVGLSVSRVGSAAQV-KALKQ 362


>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
          Length = 486

 Score = 31.6 bits (70), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 109 LHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENE---TNGYIFIHAEGGLNQ 165
           LH   ++ A  L E   S + +  P  E + G +S   P N    T+G IF+ AE     
Sbjct: 279 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 338

Query: 166 QRIAICNAVAVAKIMNATLILPVLKQ 191
            R AI   ++V+++ +A  +   LKQ
Sbjct: 339 IRPAINVGLSVSRVGSAAQV-KALKQ 363


>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
 pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
 pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
          Length = 545

 Score = 31.6 bits (70), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 109 LHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENE---TNGYIFIHAEGGLNQ 165
           LH   ++ A  L E   S + +  P  E + G +S   P N    T+G IF+ AE     
Sbjct: 338 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 397

Query: 166 QRIAICNAVAVAKIMNATLILPVLKQ 191
            R AI   ++V+++ +A  +   LKQ
Sbjct: 398 IRPAINVGLSVSRVGSAAQV-KALKQ 422


>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
          Length = 510

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 109 LHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENE---TNGYIFIHAEGGLNQ 165
           LH   ++ A  L E   S + +  P  E + G +S   P N    T+G IF+ AE     
Sbjct: 303 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 362

Query: 166 QRIAICNAVAVAKIMNATLILPVLKQ 191
            R AI   ++V+++ +A  +   LKQ
Sbjct: 363 IRPAINVGLSVSRVGSAAQV-KALKQ 387


>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
          Length = 510

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 109 LHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENE---TNGYIFIHAEGGLNQ 165
           LH   ++ A  L E   S + +  P  E + G +S   P N    T+G IF+ AE     
Sbjct: 303 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 362

Query: 166 QRIAICNAVAVAKIMNATLILPVLKQ 191
            R AI   ++V+++ +A  +   LKQ
Sbjct: 363 IRPAINVGLSVSRVGSAAQV-KALKQ 387


>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
          Length = 510

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 109 LHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENE---TNGYIFIHAEGGLNQ 165
           LH   ++ A  L E   S + +  P  E + G +S   P N    T+G IF+ AE     
Sbjct: 303 LHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKG 362

Query: 166 QRIAICNAVAVAKIMNATLILPVLKQ 191
            R AI   ++V+++ +A  +   LKQ
Sbjct: 363 IRPAINVGLSVSRVGSAAQV-KALKQ 387


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,504,156
Number of Sequences: 62578
Number of extensions: 562243
Number of successful extensions: 1302
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 10
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)