BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013112
         (449 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 183/312 (58%), Gaps = 18/312 (5%)

Query: 120 LWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKI 179
           LWE+  S    W+P +  R       PP  ETNGY+ +   GGLNQQR AICNAV  A+I
Sbjct: 62  LWESAKSG--GWRPSSAPRSDWP---PPTKETNGYLRVRCNGGLNQQRSAICNAVLAARI 116

Query: 180 MNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIR 239
           MNATL+LP L  +  W D + F+ I+DV+HFI+ LK DV+IV  IPD    K+     I+
Sbjct: 117 MNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD--VHKNGKTKKIK 174

Query: 240 RTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALK 299
                 P+ AP ++Y+   L  ++E   + L PF  RL  +   PE  RLRCRVNYHAL+
Sbjct: 175 AFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALR 234

Query: 300 FLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRK 359
           F P I ++S+ +  +++    S   +M++HLRFE  M+  + C  +   EE+  + +YRK
Sbjct: 235 FKPHIMKLSESIVDKLR----SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRK 290

Query: 360 KEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQN 419
           + +  +         +  ++R  G+CPL P EV +ILRAM +   T+IY+A+G+++GG+ 
Sbjct: 291 ENFADKR-------LIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343

Query: 420 RMAPLRNMFPNL 431
            M P R +FP L
Sbjct: 344 FMKPFRTLFPRL 355


>sp|Q2XPU7|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1
          Length = 769

 Score = 35.4 bits (80), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 314 RMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYK---NGS 370
           R+K   G +NPY+     F+   + + F    GT EE+A++ E R+  W  R++   N  
Sbjct: 3   RIKIAEGGNNPYIYSTNNFQGRQIWV-FDPNAGTPEEQAEVEEARQNFWKNRFQVKPNSD 61

Query: 371 HLWQLALQKRK 381
            LWQL   + K
Sbjct: 62  LLWQLQFLREK 72


>sp|A3LNC4|U507_PICST UPF0507 protein PICST_55861 OS=Scheffersomyces stipitis (strain
           ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
           GN=PICST_55861 PE=3 SV=2
          Length = 1194

 Score = 34.3 bits (77), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 11/74 (14%)

Query: 208 DHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQ-----FYIDNVLPRI 262
           D+ +D+L +D +   ++ D+F      FSS++ T+ N   +   +     FYIDN LP++
Sbjct: 743 DNRLDFLLEDSKNCYNVFDYFG-----FSSMKSTIPN-ETFKKIESLIFGFYIDNFLPKV 796

Query: 263 KEKKIMALKPFVDR 276
             KK+ +L    D+
Sbjct: 797 DCKKLFSLNAKYDQ 810


>sp|Q493Q4|MRAY_BLOPB Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Blochmannia
           pennsylvanicus (strain BPEN) GN=mraY PE=3 SV=1
          Length = 362

 Score = 33.9 bits (76), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 94  NHLNAPYLCKKDGIVLHCPRVKEA--PSLWENPYSATTSWKPCAERRLGG 141
           +HLN PY+C    +++ C  +  A    LW N Y A           LGG
Sbjct: 227 SHLNIPYICFSGELIIICSAIIGAGLGFLWFNTYPAQIFMGDVGSLSLGG 276


>sp|P29248|FLIA_PSEAE RNA polymerase sigma factor for flagellar operon OS=Pseudomonas
           aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
           LMG 12228) GN=fliA PE=3 SV=1
          Length = 247

 Score = 33.5 bits (75), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 292 RVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEK 351
           R+ YH L  LP   Q+ DL+ + M     ++  Y A          G SF  + G R   
Sbjct: 32  RIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGK--------GASFETYAGIRIRG 83

Query: 352 AKMAEYRKKEWPRR 365
           A + E RK +W  R
Sbjct: 84  AMLDEVRKGDWAPR 97


>sp|Q5WEM1|Y2654_BACSK UPF0176 protein ABC2654 OS=Bacillus clausii (strain KSM-K16)
           GN=ABC2654 PE=3 SV=1
          Length = 322

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 205 FDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIR 239
           +DV HF   ++ D++  R++PDW     E F + R
Sbjct: 141 YDVGHFRGAIRPDIKAFRELPDWIRQNKEQFENKR 175


>sp|Q6F1X3|KAD_MESFL Adenylate kinase OS=Mesoplasma florum (strain ATCC 33453 / NBRC
           100688 / NCTC 11704 / L1) GN=adk PE=3 SV=1
          Length = 212

 Score = 32.7 bits (73), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 9/58 (15%)

Query: 261 RIKEKKIMALKPFVDRLGYDNVPPEI--NRL-------RCRVNYHALKFLPEIEQMSD 309
           +I E+ ++ L   +D++ Y +VP EI  NR+       +C+V+YH +   P++E + D
Sbjct: 92  KILEENLIELNAKIDKVIYIDVPSEILLNRISGRLICPKCKVSYHIISRKPKLEGICD 149


>sp|A8F9I7|Y205_BACP2 UPF0176 protein BPUM_0205 OS=Bacillus pumilus (strain SAFR-032)
           GN=BPUM_0205 PE=3 SV=1
          Length = 322

 Score = 32.0 bits (71), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 205 FDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSS 237
           FDV HF   ++ D+   R++P+W  D  E+   
Sbjct: 140 FDVGHFRGAVRPDIETFRELPEWIRDNKEILEG 172


>sp|Q67X99|TPPE_ARATH Probable trehalose-phosphate phosphatase E OS=Arabidopsis thaliana
           GN=TPPE PE=2 SV=1
          Length = 354

 Score = 32.0 bits (71), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 232 SELFSSIRRTVKNIPKYAPAQF-YIDNVLPRIKEKKIMALKPFVDRLGYDNVPP--EINR 288
           S+L   +R  +KN PK    Q   +  + P IK  K  AL+  ++ LGYDN      I  
Sbjct: 235 SDLAHQVRSVLKNYPKLMLTQGRKVLEIRPIIKWDKGKALEFLLESLGYDNCTDVFPIYI 294

Query: 289 LRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSS 322
              R +  A K L + +Q   +L S+    T +S
Sbjct: 295 GDDRTDEDAFKILRDKKQGLGILVSKYAKETNAS 328


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,882,624
Number of Sequences: 539616
Number of extensions: 7482053
Number of successful extensions: 16430
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 16384
Number of HSP's gapped (non-prelim): 70
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)