Query 013112
Match_columns 449
No_of_seqs 179 out of 381
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 98.7 5.1E-08 1.8E-12 98.3 12.5 68 150-221 20-99 (408)
2 3zy2_A Putative GDP-fucose pro 97.5 0.00019 6.6E-09 72.9 8.0 68 150-221 6-75 (362)
3 2hhc_A NODZ, nodulation fucosy 81.7 1.6 5.5E-05 42.1 5.3 52 151-205 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 69.1 23 0.00077 37.5 10.3 53 151-207 144-199 (526)
5 3l32_A Phosphoprotein; antipar 38.3 16 0.00054 27.0 2.0 21 297-317 2-22 (45)
6 1p3q_Q VPS9P, vacuolar protein 28.3 14 0.00049 28.1 0.4 14 419-432 14-27 (54)
7 2hhc_A NODZ, nodulation fucosy 26.1 36 0.0012 32.6 2.8 35 295-333 145-179 (330)
8 1l2m_A REP protein; A+B fold, 26.1 63 0.0022 28.0 4.1 26 384-410 17-42 (118)
9 1wgl_A TOLL-interacting protei 21.0 24 0.0008 27.0 0.3 16 417-432 9-24 (59)
10 2eqr_A N-COR1, N-COR, nuclear 18.2 61 0.0021 24.2 2.1 35 381-430 9-43 (61)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=98.75 E-value=5.1e-08 Score=98.32 Aligned_cols=68 Identities=18% Similarity=0.412 Sum_probs=52.6
Q ss_pred CCCceEEEEec-C-ChhhHHHHHHHHHHHHHHhcce----EeecccccCccccC------CCCCCccccHHHHHHhccCc
Q 013112 150 ETNGYIFIHAE-G-GLNQQRIAICNAVAVAKIMNAT----LILPVLKQDQIWKD------QTKFEDIFDVDHFIDYLKDD 217 (449)
Q Consensus 150 ~snGYL~V~~n-G-GLNQqR~~IcDAVaVARiLNAT----LViP~Ld~~s~W~D------~S~F~dIFDvdhFI~sL~~d 217 (449)
..++||+-..+ | |.|+||...-.|.++|+.||.| ||||-...-.-|.- .-.|+++||++++. ..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence 46899998764 5 8999999999999999999999 99996543222332 24799999998754 45
Q ss_pred eEEe
Q 013112 218 VRIV 221 (449)
Q Consensus 218 VrIV 221 (449)
|+|+
T Consensus 96 vpVI 99 (408)
T 4ap5_A 96 IPVI 99 (408)
T ss_dssp SCEE
T ss_pred CCee
Confidence 5565
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.49 E-value=0.00019 Score=72.89 Aligned_cols=68 Identities=28% Similarity=0.406 Sum_probs=51.6
Q ss_pred CCCceEEE-EecCChhhHHHHHHHHHHHHHHhcceEeecccccCcccc-CCCCCCccccHHHHHHhccCceEEe
Q 013112 150 ETNGYIFI-HAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWK-DQTKFEDIFDVDHFIDYLKDDVRIV 221 (449)
Q Consensus 150 ~snGYL~V-~~nGGLNQqR~~IcDAVaVARiLNATLViP~Ld~~s~W~-D~S~F~dIFDvdhFI~sL~~dVrIV 221 (449)
.+||||+- -|-|-+.||-...--+.+.||.||.|||||-+-.-..-+ -.-.|++.|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~----l~~yhrvi 75 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGT----VAKYTRVV 75 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHH----HTTTSCEE
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecch----hhhhceee
Confidence 36999988 799999999999999999999999999999665222111 1245888998876 33344555
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=81.65 E-value=1.6 Score=42.08 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=41.1
Q ss_pred CCceEEEEecCChhhHHHHHHHHHHHHHHhcceEeecccccCccccCCCCCCccc
Q 013112 151 TNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIF 205 (449)
Q Consensus 151 snGYL~V~~nGGLNQqR~~IcDAVaVARiLNATLViP~Ld~~s~W~D~S~F~dIF 205 (449)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|- ...|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~--~~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYV--EQPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTC--SSTTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccC--CCCccccC
Confidence 4679999999999999999999999999999998886443 2232 13455666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=69.05 E-value=23 Score=37.46 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCceEEEEe--cCChhhHHHHHHHHHHHHHHhcceEeecccccCccccC-CCCCCccccH
Q 013112 151 TNGYIFIHA--EGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKD-QTKFEDIFDV 207 (449)
Q Consensus 151 snGYL~V~~--nGGLNQqR~~IcDAVaVARiLNATLViP~Ld~~s~W~D-~S~F~dIFDv 207 (449)
+..||+... ..|+..+-..++-+..+|-.+|.||||-.=. |.- ...|+++|..
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P 199 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP 199 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC
Confidence 357888876 5799999999999999999999999994322 332 2467888864
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=38.35 E-value=16 Score=27.01 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.6
Q ss_pred ccccchHHHHHHHHHHHHHHh
Q 013112 297 ALKFLPEIEQMSDLLASRMKN 317 (449)
Q Consensus 297 ALrF~p~I~~lg~~LV~RmR~ 317 (449)
++-|+.-+.++|.++|.|||+
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 456888899999999999987
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=28.25 E-value=14 Score=28.12 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=11.6
Q ss_pred cchhchHHhCCCcc
Q 013112 419 NRMAPLRNMFPNLV 432 (449)
Q Consensus 419 ~~l~pLr~~FPnl~ 432 (449)
..+..|++||||+-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 35788999999984
No 7
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=26.09 E-value=36 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.6
Q ss_pred ccccccchHHHHHHHHHHHHHHhhcCCCCCceEeeechh
Q 013112 295 YHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFE 333 (449)
Q Consensus 295 F~ALrF~p~I~~lg~~LV~RmR~~s~~s~pfiALHLRfE 333 (449)
|.-|+++++|++..+++.+.+-. ..++|+||.|.=
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~----~~~~VGVHIRrg 179 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS----GHSIIGVHVRHG 179 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT----TSEEEEEEECC-
T ss_pred HhcCCccHHHHHHHHHHHHHhcc----CCceEEEEEecC
Confidence 57789999999988888765311 258999999954
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=26.07 E-value=63 Score=27.98 Aligned_cols=26 Identities=12% Similarity=0.460 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCceEEEe
Q 013112 384 RCPLEPGEVAVILRAMGYPKETQIYVA 410 (449)
Q Consensus 384 ~CPLTPeEvgl~LrALGf~~~T~IYlA 410 (449)
+||||+||+...|+.|--+.+ ..||.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~ 42 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeee
Confidence 699999999999999986654 44443
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.01 E-value=24 Score=27.00 Aligned_cols=16 Identities=25% Similarity=0.719 Sum_probs=13.1
Q ss_pred CccchhchHHhCCCcc
Q 013112 417 GQNRMAPLRNMFPNLV 432 (449)
Q Consensus 417 G~~~l~pLr~~FPnl~ 432 (449)
-++.++-|++|||++-
T Consensus 9 ~ee~l~~L~emFP~ld 24 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMD 24 (59)
T ss_dssp CHHHHHHHHHHCSSSC
T ss_pred CHHHHHHHHHHCCCCC
Confidence 3567889999999974
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.24 E-value=61 Score=24.23 Aligned_cols=35 Identities=3% Similarity=-0.071 Sum_probs=25.4
Q ss_pred cCCCCCCChHHHHHHHHHhCCCCCceEEEeeccccCCccchhchHHhCCC
Q 013112 381 KEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPN 430 (449)
Q Consensus 381 ~~G~CPLTPeEvgl~LrALGf~~~T~IYlAsgeiyGG~~~l~pLr~~FPn 430 (449)
.+...|.|++|..+|++++ ..||. .-.-+.++.|+
T Consensus 9 r~~~~~WT~eE~~~F~~~~-------------~~~gk--~w~~Ia~~l~~ 43 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKF-------------IQHPK--NFGLIASYLER 43 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHH-------------HHSTT--CHHHHHHHCTT
T ss_pred cccCCCCCHHHHHHHHHHH-------------HHhCC--CHHHHHHHcCC
Confidence 3577899999999999999 45662 34455566664
Done!