Query 013112
Match_columns 449
No_of_seqs 179 out of 381
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 04:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013112.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013112hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 41.0 12 0.00084 30.7 4.0 30 384-414 17-47 (118)
2 d2ihoa2 d.3.1.18 (A:156-293) A 35.2 2.6 0.00019 35.3 -1.0 36 183-218 31-71 (138)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 30.6 5.7 0.00042 29.0 0.3 17 417-433 9-25 (59)
4 d1oqya2 a.5.2.1 (A:317-360) DN 30.5 4.7 0.00034 28.0 -0.2 26 388-413 1-30 (44)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 26.2 7.7 0.00056 27.8 0.4 15 418-432 13-27 (54)
6 d1vjna_ d.157.1.4 (A:) Hypothe 21.4 56 0.0041 27.4 5.2 66 154-227 130-200 (209)
7 d1fcda2 c.3.1.5 (A:115-255) Fl 19.2 24 0.0017 28.4 2.1 53 383-435 45-101 (141)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 17.3 32 0.0023 25.1 2.3 24 378-402 12-35 (75)
9 d1sfsa_ c.1.8.8 (A:) Unnamed h 17.0 28 0.0021 30.7 2.2 22 392-413 81-102 (213)
10 d2fr5a1 c.97.1.1 (A:11-146) mo 16.2 46 0.0034 26.8 3.3 99 325-437 27-132 (136)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=40.97 E-value=12 Score=30.65 Aligned_cols=30 Identities=10% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCceEEEe-eccc
Q 013112 384 RCPLEPGEVAVILRAMGYPKETQIYVA-SGQV 414 (449)
Q Consensus 384 ~CPLTPeEvgl~LrALGf~~~T~IYlA-sgei 414 (449)
+||||+||+...|+.|==+.+.. ||. +-|.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~v~rE~ 47 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIKICREL 47 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEEEcccc
Confidence 69999999999999997766654 443 4343
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=35.24 E-value=2.6 Score=35.27 Aligned_cols=36 Identities=42% Similarity=0.609 Sum_probs=30.0
Q ss_pred eEeecccccCccccCC-----CCCCccccHHHHHHhccCce
Q 013112 183 TLILPVLKQDQIWKDQ-----TKFEDIFDVDHFIDYLKDDV 218 (449)
Q Consensus 183 TLViP~Ld~~s~W~D~-----S~F~dIFDvdhFI~sL~~dV 218 (449)
-||+|...-+++|+++ ..=++|||-|.|--..+..|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 4999999999999984 34579999999988777655
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.59 E-value=5.7 Score=28.99 Aligned_cols=17 Identities=24% Similarity=0.706 Sum_probs=13.9
Q ss_pred CccchhchHHhCCCccc
Q 013112 417 GQNRMAPLRNMFPNLVR 433 (449)
Q Consensus 417 G~~~l~pLr~~FPnl~t 433 (449)
-++.+.-|++|||++-.
T Consensus 9 ~Ee~i~~LkeMFP~~D~ 25 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQ 25 (59)
T ss_dssp CHHHHHHHHHHCSSSCH
T ss_pred cHHHHHHHHHHCCCCCH
Confidence 45679999999999853
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.53 E-value=4.7 Score=28.04 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=18.7
Q ss_pred ChHHHHH--HHHHhCCCCCc--eEEEeecc
Q 013112 388 EPGEVAV--ILRAMGYPKET--QIYVASGQ 413 (449)
Q Consensus 388 TPeEvgl--~LrALGf~~~T--~IYlAsge 413 (449)
||+|..- =|.+|||+.+. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5666443 48999999987 46777655
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.17 E-value=7.7 Score=27.81 Aligned_cols=15 Identities=33% Similarity=0.809 Sum_probs=12.3
Q ss_pred ccchhchHHhCCCcc
Q 013112 418 QNRMAPLRNMFPNLV 432 (449)
Q Consensus 418 ~~~l~pLr~~FPnl~ 432 (449)
++.++.|++|||++-
T Consensus 13 ~e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 346889999999984
No 6
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=21.40 E-value=56 Score=27.38 Aligned_cols=66 Identities=23% Similarity=0.406 Sum_probs=39.1
Q ss_pred eEEEEecCChhhHHHHHHHHHHHHHHhcceEeecccccCccccCCCCCCccccHHHHHHhccC-----ceEEeccCChh
Q 013112 154 YIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKD-----DVRIVRDIPDW 227 (449)
Q Consensus 154 YL~V~~nGGLNQqR~~IcDAVaVARiLNATLViP~Ld~~s~W~D~S~F~dIFDvdhFI~sL~~-----dVrIVk~LP~~ 227 (449)
.+++.+.|.. .+.--+|+-+|+.|++-.|||-= |+.....| ++=.+|.|++.++. ++-.+.++|++
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 4445443332 23457899999999999999941 22222233 34457888887664 23334455543
No 7
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=19.21 E-value=24 Score=28.36 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=35.9
Q ss_pred CCCCCChHHHHHHH----HHhCCCCCceEEEeeccccCCccchhchHHhCCCccccc
Q 013112 383 GRCPLEPGEVAVIL----RAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVRPL 435 (449)
Q Consensus 383 G~CPLTPeEvgl~L----rALGf~~~T~IYlAsgeiyGG~~~l~pLr~~FPnl~tKe 435 (449)
=+||=-|.|+++|+ |.-|-..++.|..+......+..-...+.+++..+..+.
T Consensus 45 ~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T d1fcda2 45 FRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENA 101 (141)
T ss_dssp CSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSC
T ss_pred ccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhc
Confidence 37999999999887 777999999888776654333222234455666555444
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.34 E-value=32 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.4
Q ss_pred hhhcCCCCCCChHHHHHHHHHhCCC
Q 013112 378 QKRKEGRCPLEPGEVAVILRAMGYP 402 (449)
Q Consensus 378 ~~R~~G~CPLTPeEvgl~LrALGf~ 402 (449)
-.+..|.. ++++|+.-+|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 34666777 9999999999999995
No 9
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.99 E-value=28 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCCceEEEeecc
Q 013112 392 VAVILRAMGYPKETQIYVASGQ 413 (449)
Q Consensus 392 vgl~LrALGf~~~T~IYlAsge 413 (449)
..-.=++||||+.|.||.+=-.
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEEecc
Confidence 3446678999999999998754
No 10
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.25 E-value=46 Score=26.83 Aligned_cols=99 Identities=12% Similarity=0.263 Sum_probs=54.7
Q ss_pred ceEeeechhhhhhhhcccc-----C-CCCHHHHHHHHHHHhhcccccccCCCcchhhhHhhhcCCCCCCChHH-HHHHHH
Q 013112 325 YMALHLRFEKGMVGLSFCD-----F-VGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGE-VAVILR 397 (449)
Q Consensus 325 fiALHLRfE~DMLAfSgC~-----~-gg~~~E~~eL~~~R~~~w~~k~~~~~~~~~~~~~~R~~G~CPLTPeE-vgl~Lr 397 (449)
-|+-=++.+ |=-.|+||. | .+.-+|+..+.++-...-+ +++. . .......+. +++|=- ---+|.
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~~-~-----~~~~~~~~~-~~~PCG~CRQ~l~ 97 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DFRA-I-----AISSDLQEE-FISPCGACRQVMR 97 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEEE-E-----EEEESCSSS-CCCCCHHHHHHHH
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cEEE-E-----EeecccCCC-CCCcchhhhHHHH
Confidence 355556665 444566663 2 2446788888776532211 1110 0 000011111 233311 113455
Q ss_pred HhCCCCCceEEEeeccccCCccchhchHHhCCCcccccch
Q 013112 398 AMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVRPLNS 437 (449)
Q Consensus 398 ALGf~~~T~IYlAsgeiyGG~~~l~pLr~~FPnl~tKe~~ 437 (449)
- |..++.||+...+ |+.....|+++.|.-++++++
T Consensus 98 E--~~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L 132 (136)
T d2fr5a1 98 E--FGTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDL 132 (136)
T ss_dssp H--TCSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGG
T ss_pred h--hCCCceEEEECCC---CCEEEeEHHHhCcCCCChHHh
Confidence 5 4578999998776 666777999999999998875
Done!