BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013113
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/430 (79%), Positives = 377/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
RVRKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TAVAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/430 (78%), Positives = 377/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/430 (78%), Positives = 377/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/430 (78%), Positives = 377/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/430 (78%), Positives = 377/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/430 (78%), Positives = 377/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGFLVF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/430 (78%), Positives = 376/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGF VF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/430 (77%), Positives = 375/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGF VF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/430 (77%), Positives = 375/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGF VF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/430 (77%), Positives = 375/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGF VF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/430 (77%), Positives = 375/430 (87%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG D+FNTFFSET AG+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+RKL+D CTGLQGF VF++ VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RFDGA+NVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 587 bits (1512), Expect = e-168, Method: Compositional matrix adjust.
Identities = 273/431 (63%), Positives = 326/431 (75%), Gaps = 1/431 (0%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSD-NTIGVAHDAFNTFFSETSAG 59
MRE+ISI++GQAG Q+GN+CWELY LEHGI PDG + + + F+TFF ET G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 60 RHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
+ VPRA++VDLEP VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYTVG+EI+ L
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVL 120
Query: 120 DRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVST 179
DR+RKL+D C GLQGFL +++ +YGKKSKL F +YP+PQVST
Sbjct: 121 DRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVST 180
Query: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXX 239
+VVEPYN+VL+TH+ LEH D ++DNEAIYD+C+R+LDI RP++ NLN
Sbjct: 181 SVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVT 240
Query: 240 XXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPS 299
RFDG++NVD+ EFQTNLVPYPRIHF L SY+PV+S KA+HE SV EITNA FEP
Sbjct: 241 ASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPG 300
Query: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQP 359
+ M KCDPR GKYMA CL+YRGDVV +DV AV +K K+TVQ VDWCPTGFK GI Y+P
Sbjct: 301 NQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEP 360
Query: 360 PTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
PT P LA V RAVCM+SN T++AE + RID KFDLMYAKRAFVHWYVGEGMEEGEF+
Sbjct: 361 PTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFT 420
Query: 420 EAREDLAALEK 430
EAREDLAALE+
Sbjct: 421 EAREDLAALER 431
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 347 bits (891), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 165/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 --------RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 250/428 (58%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E + +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
VRK S++C LQGF + +++ +Y + F++ PSP+VS
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 323 bits (829), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 243/428 (56%), Gaps = 10/428 (2%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
MREII I GQ G Q+G + WE C EHG+ +G + I + N +F+E S+G+
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDI--QKERLNVYFNEASSGK 58
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
VPR++ VDLEP ID VR + LF P+ I G+ A N +A+GHYT G E+VD +D
Sbjct: 59 WVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMD 118
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
+R+ ++ C LQGF + +++ ++ + F++ PSP+ S
Sbjct: 119 VIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VEPYN+ LS H L+EH+D +DNEA+YDIC+R+L + +P+Y +LN
Sbjct: 179 RVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTT 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
R+ G +N D+ + NLVP+PR+HF + YAP+ + L+VPE+T +F+ +
Sbjct: 239 SLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMA DPR+G+Y+ +RG V K+V + +++K + FV+W P + +
Sbjct: 299 MMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV----C 354
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
+V P G + A I+N+T++ E+F R+ +F M+ ++AF+HWY EGM+E EFSE
Sbjct: 355 SVAPQG----LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSE 410
Query: 421 AREDLAAL 428
A ++ L
Sbjct: 411 AESNMNDL 418
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 277 bits (709), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 235/425 (55%), Gaps = 21/425 (4%)
Query: 5 ISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVA-HDAFNTFFS---ETSAGR 60
I + IGQAG Q+ S W+ CLEHGI P + GVA +++FFS E+S+G
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDP---LTGQTAPGVAPRGNWSSFFSKLGESSSGS 63
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRA+ VDLEP+VID V+ S LF+P LIS E A NFA G+ G+E++ +
Sbjct: 64 YVPRAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMS 122
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
R+ D C + G +V +A+ YG+ L + PSPQVS+
Sbjct: 123 RLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSV 182
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
V EPYN+V + ++L D ++ DNEA++D+ R +IE PT +LN
Sbjct: 183 VTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITA 242
Query: 241 XXRFDGAINVDIT--EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEP 298
RF G + V+I+ E TNLVP P +HF++ ++AP+ +++ E+L + E+ ++F+
Sbjct: 243 SMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDN 302
Query: 299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDV-NAAVATIKTKRTVQFVDWCPTGFKCGINY 357
S+ A C P G++++ ++YRG + K + +AA+A ++ K + + W PT FK G
Sbjct: 303 GSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVE 360
Query: 358 QPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGE 417
QP ++++ +++NNT +A V RI H FD ++ ++AF +WY+ EGM E +
Sbjct: 361 QPGI--------SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQ 412
Query: 418 FSEAR 422
+ R
Sbjct: 413 INVLR 417
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 227/432 (52%), Gaps = 14/432 (3%)
Query: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
+REI+SIH+GQ G Q+ +S W L EHG+ G + + + A+ FF + G+
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTL-KEGSNAAANSNMEVFFHKVRDGK 59
Query: 61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
+VPRAV VDLEP VI + G QLF ++ AANN+ARG+ G++++D ++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
+ + GLQGFL+ +++ Y KK F++ PSP +S +
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
VEPYN++L+ +L++ D AVLLDNEA++ I + L+ P Y +LN
Sbjct: 180 AVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTA 238
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
RF G +N D++EF TNLVP+P HF+ +S+AP+ A + + + P++ F +
Sbjct: 239 SLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPT--GFKCGINYQ 358
A D + G Y+A ++RGDV KDV+ +ATI ++++ + + P G K G
Sbjct: 299 FTAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAET 356
Query: 359 PPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 418
P LA V N+T +A VF R+ +FD+M+ A+ HWY G+
Sbjct: 357 APEGFASSGLALV--------NHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMM 408
Query: 419 SEAREDLAALEK 430
++AR +A L +
Sbjct: 409 AKARNQIATLAQ 420
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 217/426 (50%), Gaps = 15/426 (3%)
Query: 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRH 61
REII++ +GQ G Q+G W+ C EHGI P+ ++ T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGT--DRKDVFFYQADDEHY 60
Query: 62 VPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCL 119
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G++I +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVS 178
D + + +D L+GF++ +++ Y KK ++++P+ ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 TAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXX 238
VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 239 XXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVPEITNAVFE 297
R+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ + +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 298 PSSMMAKCDPRHGK---YMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCG 354
P ++M Y+A + +G+V P V+ ++ I+ ++ F+ W P +
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
++ + P + ++ + M++N+T+++ +F R ++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 415 EGEFSE 420
+ F E
Sbjct: 415 KDNFDE 420
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 217/426 (50%), Gaps = 15/426 (3%)
Query: 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRH 61
REII++ +GQ G Q+G W+ C EHGI P+ ++ T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGT--DRKDVFFYQADDEHY 60
Query: 62 VPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKED--AANNFARGHYTVGKEIVDLCL 119
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G++I +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSP-QVS 178
D + + +D L+GF++ +++ Y KK ++++P+ ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 TAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXX 238
VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 239 XXXXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVPEITNAVFE 297
R+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ + +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 298 PSSMMAKCDPRHGK---YMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCG 354
P ++M Y+A + +G+V P V+ ++ I+ ++ F+ W P +
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
++ + P + ++ + M++N+T+++ +F R ++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 415 EGEFSE 420
+ F E
Sbjct: 415 KDNFDE 420
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 36
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 14/15 (93%), Positives = 15/15 (100%)
Query: 416 GEFSEAREDLAALEK 430
GEFSEARED+AALEK
Sbjct: 1 GEFSEAREDMAALEK 15
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 40 NTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSY---RQLFHPE---QLI 93
N I A T + H+ + FV EPT+I +V T ++F P +
Sbjct: 347 NCISSAKSEGATILTGGRRPEHLKKGYFV--EPTIITDVTTSMQIWREEVFGPVLAVKTF 404
Query: 94 SGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVF 138
S +E+A N HY +G ++ L+R +LS LQ +V+
Sbjct: 405 STEEEAINLANDTHYGLGSAVMSNDLERCERLSK---ALQAGIVW 446
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 355 INYQPPTVVPGGDLAKVQRAVCM--ISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412
+ +Q P VPG +A R + VAE ++++ +L+ +++ Y+ EG
Sbjct: 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG 143
Query: 413 MEEGE 417
GE
Sbjct: 144 FSGGE 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,987,153
Number of Sequences: 62578
Number of extensions: 467281
Number of successful extensions: 955
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 32
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)