Query 013113
Match_columns 449
No_of_seqs 161 out of 1343
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5E-132 1E-136 950.0 32.0 441 1-448 1-442 (443)
2 PLN00221 tubulin alpha chain; 100.0 1E-114 3E-119 893.6 33.8 449 1-449 1-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1E-112 2E-117 879.2 33.8 443 1-443 1-443 (448)
4 PTZ00010 tubulin beta chain; P 100.0 1E-108 3E-113 849.9 31.9 429 1-439 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 2E-108 5E-113 849.8 32.2 428 1-438 1-428 (447)
6 cd02186 alpha_tubulin The tubu 100.0 3E-108 7E-113 844.9 32.0 434 2-435 1-434 (434)
7 PLN00222 tubulin gamma chain; 100.0 4E-107 9E-112 837.8 32.9 434 1-442 2-448 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 7E-107 2E-111 832.0 30.4 423 2-432 1-431 (431)
9 cd02187 beta_tubulin The tubul 100.0 4E-106 8E-111 828.6 32.4 424 2-435 1-424 (425)
10 PTZ00387 epsilon tubulin; Prov 100.0 1E-105 2E-110 827.9 32.2 419 1-440 1-454 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 6E-103 1E-107 750.8 28.1 430 1-438 2-442 (448)
12 cd02189 delta_tubulin The tubu 100.0 1.9E-98 4E-103 775.0 32.7 412 4-433 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 1.6E-98 4E-103 760.7 28.8 379 2-435 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 1.6E-90 3.4E-95 706.5 29.5 382 3-434 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 1.6E-84 3.4E-89 621.9 16.9 406 1-429 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 1.9E-71 4E-76 534.7 15.4 344 45-436 7-350 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.2E-65 6.9E-70 511.5 23.6 328 3-381 1-328 (328)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.1E-51 2.4E-56 389.8 10.1 215 3-225 1-215 (216)
19 cd06060 misato Human Misato sh 100.0 5.4E-48 1.2E-52 399.0 30.1 415 2-434 1-493 (493)
20 smart00864 Tubulin Tubulin/Fts 100.0 6.5E-38 1.4E-42 290.5 10.1 185 51-246 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.2E-32 2.5E-37 276.5 14.7 221 1-272 1-233 (349)
22 KOG2530 Members of tubulin/Fts 100.0 5.1E-31 1.1E-35 259.6 11.8 238 1-256 1-323 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 1.4E-28 3.1E-33 242.4 13.3 204 4-259 3-206 (303)
24 TIGR00065 ftsZ cell division p 99.9 1.4E-26 3.1E-31 231.7 12.9 205 3-259 19-223 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 4.2E-26 9.2E-31 225.8 12.9 207 4-261 3-209 (304)
26 PRK13018 cell division protein 99.9 1.2E-24 2.6E-29 218.7 13.4 205 4-260 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 2.9E-23 6.2E-28 179.4 10.8 126 263-393 1-126 (126)
28 PRK09330 cell division protein 99.9 6.9E-23 1.5E-27 206.1 11.7 207 3-260 15-221 (384)
29 PF14881 Tubulin_3: Tubulin do 99.8 1.5E-20 3.2E-25 171.5 11.8 132 101-244 41-180 (180)
30 COG0206 FtsZ Cell division GTP 99.5 4E-13 8.6E-18 132.9 12.2 150 98-261 70-219 (338)
31 PF10644 Misat_Tub_SegII: Misa 99.4 1.3E-13 2.8E-18 116.9 4.4 65 2-74 1-69 (115)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.8E-07 3.9E-12 79.3 2.4 114 248-392 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.8 0.00034 7.4E-09 70.8 13.0 102 93-195 99-218 (345)
34 PF06908 DUF1273: Protein of u 72.4 14 0.00031 33.7 7.0 85 114-207 27-111 (177)
35 PRK14484 phosphotransferase ma 69.6 4.5 9.7E-05 34.7 2.9 41 116-160 42-83 (124)
36 PF03610 EIIA-man: PTS system 66.9 6.9 0.00015 32.7 3.6 32 114-145 39-70 (116)
37 PF12953 DUF3842: Domain of un 60.6 7.6 0.00016 33.4 2.6 44 144-201 7-51 (131)
38 PRK13660 hypothetical protein; 60.0 35 0.00076 31.3 7.0 108 114-240 27-135 (182)
39 PLN02847 triacylglycerol lipas 57.7 11 0.00025 40.6 3.9 116 49-170 153-287 (633)
40 cd00741 Lipase Lipase. Lipase 57.5 16 0.00035 31.8 4.3 64 106-173 2-65 (153)
41 cd00006 PTS_IIA_man PTS_IIA, P 57.0 15 0.00032 31.1 3.8 31 115-145 40-70 (122)
42 TIGR00824 EIIA-man PTS system, 54.9 17 0.00038 30.5 3.9 32 115-146 41-72 (116)
43 cd00519 Lipase_3 Lipase (class 49.4 16 0.00035 34.3 3.2 58 102-163 98-155 (229)
44 PF01764 Lipase_3: Lipase (cla 47.8 15 0.00032 31.2 2.5 56 104-163 35-91 (140)
45 PRK09461 ansA cytoplasmic aspa 47.2 57 0.0012 32.9 6.9 95 110-211 63-157 (335)
46 PF12210 Hrs_helical: Hepatocy 46.3 24 0.00051 28.7 3.1 52 378-434 28-88 (96)
47 TIGR02364 dha_pts dihydroxyace 45.7 20 0.00043 30.7 2.9 53 116-173 42-96 (125)
48 PF00710 Asparaginase: Asparag 41.9 84 0.0018 31.3 7.1 93 110-210 54-147 (313)
49 PF01713 Smr: Smr domain; Int 39.7 1E+02 0.0022 23.8 5.9 56 116-174 9-70 (83)
50 PLN02408 phospholipase A1 37.1 65 0.0014 32.9 5.4 62 113-178 179-242 (365)
51 COG0572 Udk Uridine kinase [Nu 36.0 37 0.0008 32.1 3.3 27 137-164 9-35 (218)
52 cd00411 Asparaginase Asparagin 35.2 1.2E+02 0.0025 30.5 6.9 92 111-210 61-154 (323)
53 PF09370 TIM-br_sig_trns: TIM- 34.6 21 0.00044 34.7 1.3 33 117-157 2-34 (268)
54 PF02353 CMAS: Mycolic acid cy 29.6 67 0.0015 31.4 4.0 63 101-170 29-92 (273)
55 PF02879 PGM_PMM_II: Phosphogl 28.3 45 0.00097 27.0 2.2 27 133-159 20-46 (104)
56 TIGR00519 asnASE_I L-asparagin 28.0 1.5E+02 0.0032 29.9 6.3 94 111-211 60-158 (336)
57 PF08259 Periviscerokin: Periv 28.0 27 0.0006 16.7 0.5 8 257-264 3-10 (11)
58 TIGR00262 trpA tryptophan synt 25.5 1.7E+02 0.0037 28.2 6.0 75 120-213 154-234 (256)
59 PF03283 PAE: Pectinacetyleste 25.3 1.4E+02 0.0031 30.4 5.6 50 107-163 132-183 (361)
60 smart00870 Asparaginase Aspara 24.8 2.2E+02 0.0047 28.5 6.8 96 111-211 58-155 (323)
61 PRK15088 PTS system mannose-sp 24.5 88 0.0019 31.4 3.9 32 115-146 42-73 (322)
62 TIGR02153 gatD_arch glutamyl-t 22.7 2.6E+02 0.0057 29.0 7.1 90 111-207 121-211 (404)
63 COG1611 Predicted Rossmann fol 22.7 1.2E+02 0.0025 28.4 4.1 49 114-175 32-80 (205)
64 COG1929 Glycerate kinase [Carb 21.9 1.8E+02 0.0039 29.6 5.4 101 90-210 195-301 (378)
65 COG4962 CpaF Flp pilus assembl 21.8 63 0.0014 32.7 2.2 37 116-160 160-197 (355)
66 CHL00200 trpA tryptophan synth 21.4 2.2E+02 0.0048 27.7 5.9 67 120-203 158-230 (263)
67 PF04695 Pex14_N: Peroxisomal 21.2 41 0.00088 29.2 0.7 28 399-429 24-51 (136)
68 TIGR01732 tiny_TM_bacill conse 21.1 59 0.0013 19.8 1.1 13 142-154 1-13 (26)
69 PTZ00489 glutamate 5-kinase; P 20.8 3.9E+02 0.0085 25.9 7.5 49 157-207 87-135 (264)
70 COG1528 Ftn Ferritin-like prot 20.5 67 0.0014 29.0 1.9 48 383-436 96-145 (167)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=5e-132 Score=950.02 Aligned_cols=441 Identities=59% Similarity=1.055 Sum_probs=423.4
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
||||||||+||||||||.+||+++|.||+|.++|.+...++. +.++.++||+|++.++|+||||+||+||+||+.++.
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~--~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDE--GDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCccc--ccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 999999999999999999999999999999999997665443 568899999999999999999999999999999999
Q ss_pred cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
|+|+.+|+|++++++++|+|||||+|+|+.|+++.+.++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240 (449)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (449)
||||.+.+++|+|.++.++++|||||++|++++|.|+||+++++||.+|+++|.+.|++++|+|.++|++||++|+++|+
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (449)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (449)
++||||++|.||.+|.+||||+||+||+.++|+|+++..+..+++.++.++++++|+++|+|.+|+|+.++|++++.++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113 321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA 400 (449)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 400 (449)
|++.++++++++.+++.|++..|++|.|+++|+++|+.+|.. ..+.+.++|+|+|+|+|.+.|+++.++|++||+
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~ 393 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK 393 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999998832 334588999999999999999999999999999
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCC
Q 013113 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDED-DGEE 448 (449)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~-~~~~ 448 (449)
||||||||+++||||+||.||++++.+|.++|++++++.-+++. ||||
T Consensus 394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~~~~~ 442 (443)
T COG5023 394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEE 442 (443)
T ss_pred hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhhhhcc
Confidence 99999999999999999999999999999999999866554443 4444
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.3e-114 Score=893.65 Aligned_cols=449 Identities=93% Similarity=1.458 Sum_probs=423.1
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|||||+||+||||||||.+||+++++||+++++|....+.......+++++||+|..+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322111345789999999999999999999999999999999
Q ss_pred cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240 (449)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (449)
||++.+.+++|+|+...+++++++||++|++++|.+++|++++|||++|.++|++.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (449)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (449)
++||||.++.|++++++||||||++||++++++|+++.....++.+++.+|++++|++++++++++|+.++||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113 321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA 400 (449)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 400 (449)
|+..+.++.+.+.+++.+++..|++|+|+++++++|.++|..+++..+.+.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888999999999999999999887676666667789999999999999999999999999999
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCC-CCCCCC
Q 013113 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDE-DDGEEY 449 (449)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~-~~~~~~ 449 (449)
||||||||+++||||+||.||+++|++|+++|+++..+..+++ ||.|||
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 450 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEEY 450 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 9999999999999999999999999999999999987766555 577776
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1e-112 Score=879.22 Aligned_cols=443 Identities=91% Similarity=1.455 Sum_probs=417.8
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|||||+||+||||||||.+||+++++||+++++|....+.......++.++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322111245789999999999999999999999999999999
Q ss_pred cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
++++++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240 (449)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (449)
||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|++.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999766799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (449)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (449)
++||||.++.|++++++||||||++||++++++|+.+.....++.+++.+|++++|+++++++.++|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113 321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA 400 (449)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 400 (449)
|+..+.++.+.+.+++.+++..|++|+|+++++++|.++|..++...+.+.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999999887776666666789999999999999999999999999999
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 013113 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDE 443 (449)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~ 443 (449)
||||||||+++||||+||.||+++|++|+++|+++..+..+|+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~ 443 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADEE 443 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 9999999999999999999999999999999999975554443
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.2e-108 Score=849.94 Aligned_cols=429 Identities=43% Similarity=0.847 Sum_probs=407.6
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|||||+||+||||||||.+||+++++||++.++|.+...++. ..++.++||+|+.+++|+||+|+||+||++|+.++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999988876443221 235678999999999999999999999999999999
Q ss_pred cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
++++++|+|++++.+++|+|||||+|||..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240 (449)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (449)
||++.+++++|+|+...+++++|+||++|++++|.+++|++++|||++|+++|++.+++++|+|.++|++||++|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999999776889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (449)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (449)
++||||.+|.|++++.+||||||++||++++++|+.+..+..++.+++.+|++++|++++++.+++|+.++|+++++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113 321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA 400 (449)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 400 (449)
|++.+.++.+.+..++.+++..|++|+|+++++++|.++|... ++++++++|+|+|..+|+++.++|++||+
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNstsi~~~~~~i~~~f~~m~~ 390 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGL--------KMSVTFIGNSTAIQEMFRRVGEQFTAMFR 390 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCc--------cceEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888999999999999999999887532 68899999999999999999999999999
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCC
Q 013113 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEG 439 (449)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~ 439 (449)
||||||||+++||||+||.||+++|++|+++|+++....
T Consensus 391 rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987543
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.4e-108 Score=849.80 Aligned_cols=428 Identities=43% Similarity=0.851 Sum_probs=406.0
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|||||+||+||||||||.+||+++++||+++++|.+....+. ..+++++||+|.++++|+||+|+||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999988876443221 235678999999999999999999999999999999
Q ss_pred cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
++++++|++++++.+++|+|||||+|||+.|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|++.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240 (449)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (449)
||++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|.++|++||+.|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999999767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (449)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (449)
++||||.++.++.+++++|||+|++||+.++++|+.+.....++.+++.+++++++++++++.+++|+.++|+++++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999887766788899999999999999999988999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113 321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA 400 (449)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 400 (449)
|+..+.++.+.+.+++.+++..|++|+|+++++.+|.++|... ++++++|+|+|+|..+|++++++|++||+
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~ 390 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888899999999999999999887533 67899999999999999999999999999
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccC
Q 013113 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 (449)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~ 438 (449)
||||||||+++|||++||.||+++|++++++|+++...
T Consensus 391 rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred cCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988643
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=3.4e-108 Score=844.94 Aligned_cols=434 Identities=86% Similarity=1.401 Sum_probs=411.2
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccc
Q 013113 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTG 81 (449)
Q Consensus 2 ~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~ 81 (449)
||||+||+||||||||.+||+++++||+++++|......+.....+.+++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999999876443221123467899999999999999999999999999999998
Q ss_pred ccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhc
Q 013113 82 SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (449)
Q Consensus 82 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~dey 161 (449)
+++.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccc
Q 013113 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTS 241 (449)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (449)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeecccc
Q 013113 242 LRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRG 321 (449)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (449)
+||||.++.|+++++++|||||++||++++++|+++.....++.+++.+|++++|+++++|+.++|+.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhhc
Q 013113 322 DVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAK 401 (449)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~r 401 (449)
+..+.++.+.+..++.++...|++|+|+++++++|+++|...+...+.+.++++++++|+|+|.++|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999999877766667677899999999999999999999999999999
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHh
Q 013113 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (449)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 435 (449)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=4.2e-107 Score=837.83 Aligned_cols=434 Identities=31% Similarity=0.591 Sum_probs=401.7
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|||||+||+||||||||.+||+++++||+++++|.+..+.+ ...++.++||+|+++++|+|||||||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999998887643222 1246789999999999999999999999999999999
Q ss_pred cccccccCccccccCcc--cCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhh
Q 013113 81 GSYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~ 158 (449)
++++++|+|++++.+++ |+|||||+||+ .|++..++++|+||+++|.||++|||+++||+|||||||+|++|+|.|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88999999999999986 69999999965 6999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeeEEEecCCC-CCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhc
Q 013113 159 VDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISS 237 (449)
Q Consensus 159 deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (449)
|+||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.+++++|+|.++|++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 999999999999999863 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhhcCCCCCcccccccccccccccc-cccccccChhhHHHHhcCCCCCCcccCCCC-----Cc
Q 013113 238 LTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVPEITNAVFEPSSMMAKCDPRH-----GK 311 (449)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~ 311 (449)
+|+++||||.+|.|++++++||||||++||++++++|+.+.. ...++..++.++++++|++++++..++|+. ++
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997652 345677889999999999999999888877 89
Q ss_pred eeeeeecccccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHH
Q 013113 312 YMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRI 391 (449)
Q Consensus 312 ~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l 391 (449)
||++++++||++.+.++.+.+.+++.++++.|++|+|+++++++|.++|...+ +.+.++++|+|+|+|..+|+++
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i 393 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIRHLFSKC 393 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999998875422 1357899999999999999999
Q ss_pred HHHHHHHhhccccccccccCCCC----hhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 013113 392 DHKFDLMYAKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGAEGVDD 442 (449)
Q Consensus 392 ~~~~~~~~~rkAflH~Y~~~Gme----e~eF~Ea~~~l~~li~~Y~~~~~~~~~~ 442 (449)
.++|++||+||||||||+++||+ ++||.||+++|++|+++|++++..+..|
T Consensus 394 ~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 394 LSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred HHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999993 8999999999999999999987555433
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=7.2e-107 Score=832.02 Aligned_cols=423 Identities=35% Similarity=0.672 Sum_probs=398.3
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccc
Q 013113 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTG 81 (449)
Q Consensus 2 ~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~ 81 (449)
||||+||+||||||||.+||+++++||+++++|....+.. ...+..++||+|.++++|+|||||||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999998887644322 13457899999999999999999999999999999999
Q ss_pred ccccccCccccccCcc--cCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhh
Q 013113 82 SYRQLFHPEQLISGKE--DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (449)
Q Consensus 82 ~~~~~~~~~~~~~~~~--gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~d 159 (449)
+++++|+|++++.+++ |+||||++||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 9989999999999987 99999999965 69999999999999999999999999999999999999999999999999
Q ss_pred hcCCcceeeEEEecCCCC-CcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcc
Q 013113 160 DYGKKSKLGFTIYPSPQV-STAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSL 238 (449)
Q Consensus 160 eyp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 238 (449)
+||++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|++.++++.|+|.++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998754 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccchhhhhhcCCCCCcccccccccccccccc-cccccccChhhHHHHhcCCCCCCcccCC-CCCceeeee
Q 013113 239 TTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVPEITNAVFEPSSMMAKCDP-RHGKYMACC 316 (449)
Q Consensus 239 t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~ 316 (449)
|+++||||.+|.|++++++||||||++||++++++|+.+.. ...++..++.+|++.++++.++|+.++| +.++|+|++
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999999877 5677889999999999999999999998 889999999
Q ss_pred ecccccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHH
Q 013113 317 LMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFD 396 (449)
Q Consensus 317 ~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~ 396 (449)
+++||++.+.++.+.+.+++.++++.|++|+|+++++++|.++|...++ .+.++++++|+|+|.++|+++.++|+
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~ 392 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFD 392 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999999999999988764322 25789999999999999999999999
Q ss_pred HHhhccccccccccCCCC---hhhHHHHHHHHHHHHHHH
Q 013113 397 LMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 432 (449)
Q Consensus 397 ~~~~rkAflH~Y~~~Gme---e~eF~Ea~~~l~~li~~Y 432 (449)
+||+||||||||+++||| ++||.||+++|++|+++|
T Consensus 393 ~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 393 KLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999 999999999999999998
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.7e-106 Score=828.56 Aligned_cols=424 Identities=43% Similarity=0.859 Sum_probs=402.2
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccc
Q 013113 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTG 81 (449)
Q Consensus 2 ~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~ 81 (449)
||||+||+||||||||.+||+++++||+++++|.+....+. ..+..++||+|.++++|+||+|+||+||++|+.++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDL--QLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccc--cccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 79999999999999999999999999999988865433221 2356789999999999999999999999999999988
Q ss_pred ccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhc
Q 013113 82 SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (449)
Q Consensus 82 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~dey 161 (449)
+++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccc
Q 013113 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTS 241 (449)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (449)
|++.+++++|+|+...+++++++||++|+|++|.+++|++++|||++|.++|.+.+++..++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999998667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeecccc
Q 013113 242 LRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRG 321 (449)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (449)
+||||.+|.|+.++++||||||++||++++++|+.+.....++.+++.+|++++|++++++..++|+.++|+++++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877677888999999999999999998889999999999999999
Q ss_pred cCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhhc
Q 013113 322 DVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAK 401 (449)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~r 401 (449)
+..+.++.+.+.+++.++...|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~k 390 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMSATFIGNSTAIQELFKRISEQFTAMFRR 390 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCc--------ceeEEEecCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888899999999999999999877532 688999999999999999999999999999
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHh
Q 013113 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (449)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 435 (449)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 391 kAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 391 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1e-105 Score=827.93 Aligned_cols=419 Identities=32% Similarity=0.610 Sum_probs=391.5
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhC-CCCCCCCCCCCCccccccccccccccCCC-----C--CcCccceeeCCCC
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHG-IHPDGMMPSDNTIGVAHDAFNTFFSETSA-----G--RHVPRAVFVDLEP 72 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~f~e~~~-----~--~~~pR~llvD~e~ 72 (449)
|||||+||+||||||||.+||+++++||+ ++++|.. ++++++||+|.++ + +|+|||||||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 6776642 3467899985432 3 4999999999999
Q ss_pred ceeeeccccccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhH
Q 013113 73 TVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSL 152 (449)
Q Consensus 73 ~~i~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~ 152 (449)
++|++++.++++++|++++++.+++|+||||++|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCC-----------
Q 013113 153 LLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER----------- 221 (449)
Q Consensus 153 l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~----------- 221 (449)
|+|.|+|+||++.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 99999999999999999999985 578899999999999999999999999999999999988777653
Q ss_pred ----------------CCcchhhHHHHHHHhccccccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccc
Q 013113 222 ----------------PTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQ 285 (449)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~ 285 (449)
++|+++|++||++|+++|+++||||.+|.|++++.+||||||++||++++++|+.+.....++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 8899999999999999999999999999999999999999999999999999998877777788
Q ss_pred cChhhHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCC
Q 013113 286 LSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPG 365 (449)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~ 365 (449)
.++.+|++++|++.++|..++|+.++|+++++++||+..+.++.+.+.+++. ...|++|+|+++++++|.++|...
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~-- 386 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQ-- 386 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCC--
Confidence 9999999999999999999999999999999999999889999988887764 488999999999999999987543
Q ss_pred CCcccccceeEEeecChhhHHHHHHHHHHHHHHhhccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCCC
Q 013113 366 GDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGV 440 (449)
Q Consensus 366 ~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~ 440 (449)
.+++++++|+|+|.++|++++++|++||+||||||||+ +|||++||.||+++|++|+++|++++..+.
T Consensus 387 ------~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~~~ 454 (465)
T PTZ00387 387 ------PYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAEP 454 (465)
T ss_pred ------ceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 67899999999999999999999999999999999999 799999999999999999999999974433
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=5.6e-103 Score=750.78 Aligned_cols=430 Identities=33% Similarity=0.632 Sum_probs=401.4
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
||||||+|+||||||||.+||++||.||+|.++|..+..+. .+.++.++||+|.+++.|+|||||||+||+||+.+.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 68999999999999999999999999999999998765444 3567899999999999999999999999999999999
Q ss_pred cccccccCccccccC--cccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhh
Q 013113 81 GSYRQLFHPEQLISG--KEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~ 158 (449)
++++++|+++|++.. ..|||||||.|| ..|++..|+|+|.|+|++|.||+++||+++||++||||||+|+.|+|.|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 999999999999754 468999999996 45999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeeEEEecCCC-CCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhc
Q 013113 159 VDYGKKSKLGFTIYPSPQ-VSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISS 237 (449)
Q Consensus 159 deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (449)
|+||||.+.+++|||... .++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+++|+|.++|++||+.|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999863 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhhcCCCCCcccccccccccccccccccc--cccChhhHHHHhcCCCCCCcccCC---CCCce
Q 013113 238 LTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVPEITNAVFEPSSMMAKCDP---RHGKY 312 (449)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ 312 (449)
.|.++||||+++.++..+...|+|+|++||++++++|+++...... +..++.+.++.++.++++|.+..+ .+..|
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 9999999999999999999999999999999999999998765544 778899999999999999987655 33579
Q ss_pred eeeeecccccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHH
Q 013113 313 MACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRID 392 (449)
Q Consensus 313 ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~ 392 (449)
++...++.|.+.+..+...+.+++.++...|+.|.|.++.+++....|..... ++.|+.+|+|||+|..+|++++
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~ 393 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERIL 393 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999887765432 4789999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCChh---hHHHHHHHHHHHHHHHHHhccC
Q 013113 393 HKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGAE 438 (449)
Q Consensus 393 ~~~~~~~~rkAflH~Y~~~Gmee~---eF~Ea~~~l~~li~~Y~~~~~~ 438 (449)
.+|+||++||||||+|.++||+++ ||.|+++.+++++++|..+++.
T Consensus 394 ~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~ 442 (448)
T KOG1374|consen 394 GQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQP 442 (448)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999888 9999999999999999988643
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1.9e-98 Score=774.99 Aligned_cols=412 Identities=26% Similarity=0.472 Sum_probs=377.9
Q ss_pred EEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccccc
Q 013113 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSY 83 (449)
Q Consensus 4 ii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 83 (449)
||+||+||||||||.+||+++++||+++++|.+. ...+.+++||+|..+++|+||+|+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 8999999999999999999999999998877542 1245678999999999999999999999999999998664
Q ss_pred c--cccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhc
Q 013113 84 R--QLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (449)
Q Consensus 84 ~--~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~dey 161 (449)
+ ++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 3 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccc
Q 013113 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTS 241 (449)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (449)
|++.+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|++.++++.++|.++|++||+.|+++|+|
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999976 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-C-------CCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhc---CCCCCCcc------
Q 013113 242 LRF-D-------GAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVF---EPSSMMAK------ 304 (449)
Q Consensus 242 ~r~-~-------~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~------ 304 (449)
.|+ | |..+.++++++++|||+|++||++++++|+++.....++..++.+|++.++ .+.+++..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 986 6 336899999999999999999999999999987777788999999999866 56665544
Q ss_pred -------------cCCCCCceeeeeecccccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccc
Q 013113 305 -------------CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371 (449)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 371 (449)
++++.++|+++++++||+....++...+ ++...|++|+|+++++++|.++|... +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~------~~ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFS------KY 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcC------Cc
Confidence 4567889999999999988777776443 36688999999999999998876531 23
Q ss_pred cceeEEeecChhhHHHHHHHHHHHHHHhhccccccccccCCCChhhHHHHHHHHHHHHHHHH
Q 013113 372 QRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433 (449)
Q Consensus 372 ~~s~~~l~N~t~i~~~l~~l~~~~~~~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~ 433 (449)
++++++++|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 384 ~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.6e-98 Score=760.67 Aligned_cols=379 Identities=35% Similarity=0.709 Sum_probs=362.4
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccc
Q 013113 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTG 81 (449)
Q Consensus 2 ~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~ 81 (449)
||||+||+||||||||.+||+.+++|| |+||+|+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 799999999999999999999999887 679999999999999999999
Q ss_pred ccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhc
Q 013113 82 SYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (449)
Q Consensus 82 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~dey 161 (449)
+++++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccc
Q 013113 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTS 241 (449)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (449)
|++.+++++|+|+.. +++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|++
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 999999999999985 788999999999999999999999999999997 6999999999999999999
Q ss_pred cccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeecccc
Q 013113 242 LRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRG 321 (449)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (449)
+||||.+|.|++++.+||||||++||++++++|+.+.....++..++.+|++.+++++++|+.++|+.++|+++++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877677788999999999999999999889999999999999999
Q ss_pred cCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhhc
Q 013113 322 DVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAK 401 (449)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~r 401 (449)
+..+.++.+.+.+++.+ ..|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+|
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTsI~~~f~~i~~~f~~mf~k 345 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTCIKGTFTELKERFMKLYKR 345 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccHHHHHHHHHHHHHHHHHhc
Confidence 99999999888877665 67999999999999998877532 678999999999999999999999999999
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHh
Q 013113 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (449)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~ 435 (449)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 346 rAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 346 KAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred ccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.6e-90 Score=706.52 Aligned_cols=382 Identities=49% Similarity=0.894 Sum_probs=362.8
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccccc
Q 013113 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGS 82 (449)
Q Consensus 3 eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 82 (449)
|||+||+||||||||.+||+++ |+||+||++|+.++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999873 99999999999999988
Q ss_pred cccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcC
Q 013113 83 YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (449)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp 162 (449)
.+.+|++++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|+.++|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccccc
Q 013113 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSL 242 (449)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (449)
++.+++++|+|+...+++++++||++|+|++|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999987556899999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccccc
Q 013113 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (449)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (449)
||||.++.|++++.++|||||++||++++++|+++.....++..++.+++++++++.+++..++++.++|+++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998777777889999999999999999998999999999999999999
Q ss_pred CChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhhcc
Q 013113 323 VVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKR 402 (449)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~rk 402 (449)
..+.++.+.+.+++.+.... +|+|+++++++|.++|. .+..+++++++|||+|.++|++++++|++||+||
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~r 350 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRK 350 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999888887665443 89999999999998875 0226889999999999999999999999999999
Q ss_pred ccccccccCCCChhhHHHHHHHHHHHHHHHHH
Q 013113 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (449)
Q Consensus 403 AflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~ 434 (449)
||||||+++||||+||.||+++|++++++|++
T Consensus 351 Aflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 351 AFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred cchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999974
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=1.6e-84 Score=621.88 Aligned_cols=406 Identities=83% Similarity=1.369 Sum_probs=388.0
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|||||.|++||.|.|||...|+.+|.||++.++|..+.+.+.....+.+++||.++..++++||+++||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999988765543345578899999999999999999999999 999999
Q ss_pred cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
|.|+.+|+|++++.|+++++||+|+|+|+.|+|+.+..+++||+.++.|..+|||.++||+|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240 (449)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (449)
|++|..+.++++|.+..++.+++|||++|+.....+++|+.+++||++++.+|++++.+++|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR 320 (449)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (449)
++||+|.+|.||.+|.+||||+| + ++|+.+..+..+++.++.+++...|++.++|.+|||+.++|.++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999998888999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113 321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA 400 (449)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 400 (449)
|++.|+++...+..+|.+++..|++ ..+++..+++..+..|+++|+|+|++...++-.+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 9999999999999999999988876 2345667778899999999999999999999999999999
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHH
Q 013113 401 KRAFVHWYVGEGMEEGEFSEAREDLAALE 429 (449)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li 429 (449)
||||+|||.++||||+||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999998763
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=1.9e-71 Score=534.67 Aligned_cols=344 Identities=41% Similarity=0.837 Sum_probs=329.4
Q ss_pred cccccccccccCCCCCcCccceeeCCCCceeeeccccccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHh
Q 013113 45 AHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124 (449)
Q Consensus 45 ~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~ 124 (449)
+..+++++|.+...++|+||+|+||+||.+++++.+++++.+|+|++ +++| .|+|+.|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 46688999999999999999999999999999999999999999999 4433 8889999887776
Q ss_pred hhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEe
Q 013113 125 LSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 204 (449)
Q Consensus 125 ~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~ 204 (449)
.||++||||+.||+|||||||+|+.++..++++||.+++.+++|.|+.. ++++++|||+.|++.+|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred cChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccccccCCCCccchhhhhhcCCCCCccccccccccccccccccccc
Q 013113 205 DNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE 284 (449)
Q Consensus 205 ~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~ 284 (449)
||++|+++|.+.+.+..++ ++|.++||||.+|.|+.++..|++|+|++||+.++++|++.....+++
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999998887 899999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCC
Q 013113 285 QLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVP 364 (449)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~ 364 (449)
.++++++++++|+.+|++..++ ||+++.++|| +.+++++++..++.|++..|++|+|+++|+++|..+|..+
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl- 285 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL- 285 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc-
Confidence 9999999999999999999886 9999999999 8899999999999999999999999999999999999877
Q ss_pred CCCcccccceeEEeecChhhHHHHHHHHHHHHHHhhccccccccccCCCChhhHHHHHHHHHHHHHHHHHhc
Q 013113 365 GGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436 (449)
Q Consensus 365 ~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~ 436 (449)
..+++.++|+|+|.+.|+++.++|..||+||||||||+++||+|+||+||..++++|+.+|+++.
T Consensus 286 -------kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~ 350 (369)
T KOG1375|consen 286 -------KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 350 (369)
T ss_pred -------cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999999993
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.2e-65 Score=511.46 Aligned_cols=328 Identities=45% Similarity=0.822 Sum_probs=303.6
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccccc
Q 013113 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGS 82 (449)
Q Consensus 3 eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 82 (449)
||++||+||||||||.+||+++ |+||+|+++++.++.++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999761 99999999999999888
Q ss_pred cccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcC
Q 013113 83 YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (449)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp 162 (449)
.+.+|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|.|||+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccccc
Q 013113 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSL 242 (449)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (449)
++.+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999997533 699999999999999999999999999999999998888889999999999999999999999
Q ss_pred ccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccccc
Q 013113 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (449)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (449)
||||.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.+++..++++.++++++++++||.
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987666667788899999999999999988888889999999999999
Q ss_pred CChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecC
Q 013113 323 VVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNN 381 (449)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~ 381 (449)
....++.+.+..++.+.+.. +|+|++++++++..++. . +.+.++++++|+
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~-~------~~~~~~~~l~Ns 328 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPA-S------EHKVSALLLSNS 328 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCC-C------CcCeEEEEeccC
Confidence 99999998888887765544 89999999999987664 1 126788999986
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.1e-51 Score=389.76 Aligned_cols=215 Identities=47% Similarity=0.878 Sum_probs=201.4
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccccc
Q 013113 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGS 82 (449)
Q Consensus 3 eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 82 (449)
|||+||+||||||||.+||+++++||+++++.. ......+.++||+|...++|+||+|+||+|+++++.+..++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 899999999999999999999999999988721 11246678999999999999999999999999999999888
Q ss_pred cccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcC
Q 013113 83 YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (449)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp 162 (449)
.+++|++++++.+++|+||||+.||+..|++..++++|+||+++|+||.+|+|+++||+|||||||+++.|++.||++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcc
Q 013113 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 (449)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~ 225 (449)
++++++++|+|+. .++++++||++++|++|.+++|++|+|||++|.++|.+.+++++|+|+
T Consensus 155 ~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 155 KKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp TSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999994 389999999999999999999999999999999999999999888775
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=5.4e-48 Score=399.05 Aligned_cols=415 Identities=18% Similarity=0.244 Sum_probs=285.8
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCC----CCCcCccceeeCCCCceeee
Q 013113 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETS----AGRHVPRAVFVDLEPTVIDE 77 (449)
Q Consensus 2 ~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~llvD~e~~~i~~ 77 (449)
|||||||+||++|+||+||||.+...+...+++. ....+++++|+++. ..+|+||+|++|+++.....
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~--------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP--------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc--------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999999544443333321 13567899999864 56999999999999876543
Q ss_pred cccccc----------------ccccCccccccCc-----ccCCCCccccccc---cchhhHHHHHHHHHhhhhhcCCCC
Q 013113 78 VRTGSY----------------RQLFHPEQLISGK-----EDAANNFARGHYT---VGKEIVDLCLDRVRKLSDNCTGLQ 133 (449)
Q Consensus 78 i~~~~~----------------~~~~~~~~~~~~~-----~gsgnnwa~G~~~---~g~~~~~~~~d~ir~~~E~cD~lq 133 (449)
-+.+.+ +-.|+|+++..-. .+.+++|+.|+-. .+.+..|+++|+||+++|+||++|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 332221 2248898885442 3556677666522 355788999999999999999999
Q ss_pred CeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCC----CcccchhhHHHHHHHHhhhcCCeeEEecCh-h
Q 013113 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV----STAVVEPYNSVLSTHSLLEHTDVAVLLDNE-A 208 (449)
Q Consensus 134 gf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~-~ 208 (449)
|||+++|++||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.++||+++|+.-. .
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999997532 257899999999999999999999999844 4
Q ss_pred hHhhhc-----cCCCCCCCCcchhhHHHHHHHhccccccccCCCCccchhhhhhcCCCCCcccccccccccccccccccc
Q 013113 209 IYDICR-----RSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYH 283 (449)
Q Consensus 209 l~~~~~-----~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~ 283 (449)
.|.... ..+.++..+-.+..+++|.+|.++|.|+|..+.. .+|.++...|.+..| |+...+.+--.+. .
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~----~ 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPM----V 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCC----C
Confidence 443221 2234444566788899999999999999998765 568899999887665 6665544322222 1
Q ss_pred cccChhhHHHHhcCCC--CCCcccC-CCCCceeeeeecccccCChh-------------------hHHHHHHhhhc---c
Q 013113 284 EQLSVPEITNAVFEPS--SMMAKCD-PRHGKYMACCLMYRGDVVPK-------------------DVNAAVATIKT---K 338 (449)
Q Consensus 284 ~~~~~~~l~~~~~~~~--~~~~~~~-~~~~~~ls~~~~~RG~~~~~-------------------~~~~~~~~~~~---~ 338 (449)
....+.++.+.+-... .++ .++ +....++.+.++.||..... .+.+.+....+ +
T Consensus 306 ~~~~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~ 384 (493)
T cd06060 306 GGQDLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYP 384 (493)
T ss_pred CCCcHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccC
Confidence 2234555555432111 222 221 23468899999999943110 01111111100 1
Q ss_pred Ccccccc------cCCCCceeeecCC-CCccC------CCCCc--ccccceeEEeecChhhHHHHHHHHHHHHHHhhccc
Q 013113 339 RTVQFVD------WCPTGFKCGINYQ-PPTVV------PGGDL--AKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRA 403 (449)
Q Consensus 339 ~~~~f~~------w~p~~~~~~~~~~-~~~~~------~~~~~--~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~rkA 403 (449)
.+..... =+|.+|..-++.. ...+. ..... ...-..++.|.|++++..+|+.++.+..|+--+|
T Consensus 385 ~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r- 463 (493)
T cd06060 385 GSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR- 463 (493)
T ss_pred CcchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh-
Confidence 0000000 0111221111100 00000 00000 0112345678999999999999999999999999
Q ss_pred cccccccCCCChhhHHHHHHHHHHHHHHHHH
Q 013113 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (449)
Q Consensus 404 flH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~ 434 (449)
+|.|.+.|+|+|||.|++++|.+++++|++
T Consensus 464 -~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 464 -KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred -hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999963
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=6.5e-38 Score=290.51 Aligned_cols=185 Identities=39% Similarity=0.673 Sum_probs=172.0
Q ss_pred cccccCCCCCcCccceeeCCCCceeeeccccccccccCccccccCcccCCCCccccccc-----cchhhHHHHHHHHHhh
Q 013113 51 TFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYT-----VGKEIVDLCLDRVRKL 125 (449)
Q Consensus 51 ~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~-----~g~~~~~~~~d~ir~~ 125 (449)
++|.++ ++.||+|++|+|+++++.+..++.++.|++.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 456654 78899999999999999998777788899988888999999999999998 8999999999999999
Q ss_pred hhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEec
Q 013113 126 SDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLD 205 (449)
Q Consensus 126 ~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~ 205 (449)
+|+| |+|+++||+|||||||+++.+++.++ +||... ++++|+|. ..|+++++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 36889999999999999999999999999
Q ss_pred ChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccccccCC
Q 013113 206 NEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDG 246 (449)
Q Consensus 206 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 246 (449)
|++|.+.|.+.+.+ .++|.++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999887765 78999999999999999999999996
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.2e-32 Score=276.52 Aligned_cols=221 Identities=22% Similarity=0.300 Sum_probs=189.7
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT 80 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~ 80 (449)
|| |..|.+|+||+.|-+++++. +. ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-------------------------~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-------------------------RSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-------------------------CcCCccceeEEEEECCHHHHHhhhc
Confidence 55 78899999999999999864 10 1123688999999999999887754
Q ss_pred cccccccCccccccCcc-----cCCCCccccccccchhhHHHHHHHHHhhhhhcCC--CCCeeEEeeCCCCccccchhHH
Q 013113 81 GSYRQLFHPEQLISGKE-----DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTG--LQGFLVFNAVGGGTGSGLGSLL 153 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~~~~sl~GGtGSG~~~~l 153 (449)
.+.++.++.+++ |+|+||. .|++..++..|.||+++|.||. +|+|++++|||||||||+++.+
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~i 119 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVL 119 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHH
Confidence 335666766653 6777765 4689999999999999999997 9999999999999999999999
Q ss_pred HHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHH
Q 013113 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ 233 (449)
Q Consensus 154 ~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~ 233 (449)
++.++++|| +++++++++|+.. +..+++||+++++++|.+++|.+|+|||++|.+.+.. + .+.|+.+|++||+
T Consensus 120 ae~lke~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~f~~~N~~Ia~ 192 (349)
T cd02202 120 AKELKERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEAYDRINEEIAR 192 (349)
T ss_pred HHHHHHhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHHHHHHHHHHHH
Confidence 999999999 8999999999874 5689999999999999999999999999999998642 2 4789999999999
Q ss_pred HHhcccccccc-----CCCCccchhhhhhcCCCCCccccccccc
Q 013113 234 IISSLTTSLRF-----DGAINVDITEFQTNLVPYPRIHFMLSSY 272 (449)
Q Consensus 234 ~i~~~t~~~r~-----~~~~~~~l~~~~~~L~p~p~~~fl~~~~ 272 (449)
.|+.++.++|| ||.+|.|++++.++|.+. .+.+.++
T Consensus 193 ~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 193 RIGLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred HHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 99999999999 999999999999999765 3444444
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.97 E-value=5.1e-31 Score=259.62 Aligned_cols=238 Identities=23% Similarity=0.338 Sum_probs=174.2
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCcccccccc-ccccccCC----CCCcCccceeeCCCCcee
Q 013113 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAF-NTFFSETS----AGRHVPRAVFVDLEPTVI 75 (449)
Q Consensus 1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~f~e~~----~~~~~pR~llvD~e~~~i 75 (449)
||||+|||+|+.+|++|+||||++..-.+..++...+. ..... ||+|+.++ ..+|+||+|++|+....-
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~------~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g 74 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPP------GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELG 74 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCCh------hhcCcchhhhhccccccCceeeccceeEEecCcccc
Confidence 99999999999999999999999555555554433221 22333 89999764 459999999999876543
Q ss_pred eeccc----------------c---------------------------------------------------ccccccC
Q 013113 76 DEVRT----------------G---------------------------------------------------SYRQLFH 88 (449)
Q Consensus 76 ~~i~~----------------~---------------------------------------------------~~~~~~~ 88 (449)
...-. | -.+..|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yH 154 (483)
T KOG2530|consen 75 TLKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYH 154 (483)
T ss_pred ccccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcC
Confidence 11000 0 0122366
Q ss_pred ccccccCc-----ccCCCCccccccccch-hhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcC
Q 013113 89 PEQLISGK-----EDAANNFARGHYTVGK-EIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (449)
Q Consensus 89 ~~~~~~~~-----~gsgnnwa~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp 162 (449)
|+.+...+ .++-++|+-|+-..-+ ...+++.|+||+++|+||.+|||+++.++.+|+| |+++.++|.|+|||+
T Consensus 155 p~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys 233 (483)
T KOG2530|consen 155 PRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYS 233 (483)
T ss_pred ccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhc
Confidence 66553322 2334566666544322 4788999999999999999999999999999996 999999999999999
Q ss_pred CcceeeEEEecCCC-CCcc---cch---hhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHH
Q 013113 163 KKSKLGFTIYPSPQ-VSTA---VVE---PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQII 235 (449)
Q Consensus 163 ~~~i~~~~v~P~~~-~~~~---~~~---~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i 235 (449)
++.+++++..|.+. .++. +-. ..|.+|++++|.+.|++++|+.--.. ++ .-....+++|+++
T Consensus 234 ~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ 302 (483)
T KOG2530|consen 234 KKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAF 302 (483)
T ss_pred CCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhc
Confidence 99999999998432 1222 222 46899999999999999999853321 11 2357789999999
Q ss_pred hccccccccCCCCccchhhhh
Q 013113 236 SSLTTSLRFDGAINVDITEFQ 256 (449)
Q Consensus 236 ~~~t~~~r~~~~~~~~l~~~~ 256 (449)
.++|.|.|.-+..+..+.+..
T Consensus 303 ds~tlptr~~ssS~~~~~d~l 323 (483)
T KOG2530|consen 303 DSITLPTRLISSSNLRQRDTL 323 (483)
T ss_pred ccccccceecchhHHHHHHHH
Confidence 999999998887655555544
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=1.4e-28 Score=242.38 Aligned_cols=204 Identities=19% Similarity=0.291 Sum_probs=169.1
Q ss_pred EEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccccc
Q 013113 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSY 83 (449)
Q Consensus 4 ii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 83 (449)
|..|.+|+||+.+-.++++. ++ .+ .+.+.||++...++.+... .
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~---~~~iainTd~~~L~~~~a~-~ 46 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EG---RSAVAVNTDAQDLLGLEAE-N 46 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC---------------------------CC---ccEEEEECcHHHHhcCCCC-c
Confidence 77899999999999999853 00 00 4789999998888766521 2
Q ss_pred ccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCC
Q 013113 84 RQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (449)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~ 163 (449)
+-++.++ .+...|+|+||..| ++..++++++||+.+|.||. |++++|||||||||+++.+++.+++.|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 2122222 13456899999765 68889999999999999994 8999999999999999999999999995
Q ss_pred cceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccccc
Q 013113 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLR 243 (449)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (449)
++++|+|.+...|..+++||+.+++++|.+++|.+++|||++|.+++.+ +.+. ..|+.+|++|++.++++|..+|
T Consensus 116 ---~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 116 ---LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred ---CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555444468899999999999999999999999999999999976 7764 5999999999999999999999
Q ss_pred cCCCCccchhhhhhcC
Q 013113 244 FDGAINVDITEFQTNL 259 (449)
Q Consensus 244 ~~~~~~~~l~~~~~~L 259 (449)
+||.+|.|++++.+.|
T Consensus 191 ~~g~invD~~dv~~~l 206 (303)
T cd02191 191 IEGEINVDFADVKNVM 206 (303)
T ss_pred cCCcccCCHHHHHHHh
Confidence 9999999999998766
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.94 E-value=1.4e-26 Score=231.68 Aligned_cols=205 Identities=15% Similarity=0.292 Sum_probs=165.5
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccccc
Q 013113 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGS 82 (449)
Q Consensus 3 eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 82 (449)
.|..|.+|+||+.+-+.+++. ++ .-.+.+.+|++...++.+...
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a~- 62 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKAD- 62 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCCC-
Confidence 378899999999999999754 00 014678899988776665421
Q ss_pred cccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcC
Q 013113 83 YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (449)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp 162 (449)
.+-++.++ .+...|+|+||+. |++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+
T Consensus 63 ~ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~ 131 (349)
T TIGR00065 63 KKILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG 131 (349)
T ss_pred eEEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC
Confidence 22223222 2334589999885 6789999999999999999986 999999999999998866666654 54
Q ss_pred CcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccccc
Q 013113 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSL 242 (449)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (449)
+..++++++|+. .|..+++||+.++|++|.+++|+++++||++|.++|.+ +.+.. .|+.+|++|++.+.++|.++
T Consensus 132 -~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~i 206 (349)
T TIGR00065 132 -ALTVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELI 206 (349)
T ss_pred -CCEEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhh
Confidence 445555555654 67899999999999999999999999999999999977 77744 99999999999999999999
Q ss_pred ccCCCCccchhhhhhcC
Q 013113 243 RFDGAINVDITEFQTNL 259 (449)
Q Consensus 243 r~~~~~~~~l~~~~~~L 259 (449)
|+||.+|.|+.++.+-|
T Consensus 207 r~~g~iNvDf~dv~~vl 223 (349)
T TIGR00065 207 TKPGLINIDFADVRAVM 223 (349)
T ss_pred ccCCcCcCCHHHHHHHH
Confidence 99999999999998765
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.93 E-value=4.2e-26 Score=225.79 Aligned_cols=207 Identities=14% Similarity=0.276 Sum_probs=169.8
Q ss_pred EEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccccc
Q 013113 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSY 83 (449)
Q Consensus 4 ii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 83 (449)
|..|.+|+||+.+-+.+++. ++ .+ ...+.+|++...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~---~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EG---VEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCC-Cc
Confidence 67899999999999999864 10 00 467899998887776653 22
Q ss_pred ccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCC
Q 013113 84 RQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (449)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~ 163 (449)
+-++.++. +...|+|+||+.| ++..++.+|+||+.+|.||.+ ++++|+|||||||+++.+++..++ |+
T Consensus 47 k~~ig~~~--t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e-~g- 114 (304)
T cd02201 47 KIQLGKEL--TRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKE-MG- 114 (304)
T ss_pred EEEcCCCC--CCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHH-cC-
Confidence 33333322 3456899998866 577888999999999999985 999999999999999997776654 65
Q ss_pred cceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccccc
Q 013113 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLR 243 (449)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (449)
+..+++.++|+. .|..+++||+.+++++|.+++|.++++||++|.++|.+.+.+.. .|+.+|++|++.++++|.++|
T Consensus 115 ~~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 115 ALTVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CCEEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 455666666664 57789999999999999999999999999999999987777766 899999999999999999999
Q ss_pred cCCCCccchhhhhhcCCC
Q 013113 244 FDGAINVDITEFQTNLVP 261 (449)
Q Consensus 244 ~~~~~~~~l~~~~~~L~p 261 (449)
+||.+|.|+.++.+.|-.
T Consensus 192 ~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 192 KPGLINLDFADVKTVMKN 209 (304)
T ss_pred cCccccCCHHHHHHHhcc
Confidence 999999999999887754
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.92 E-value=1.2e-24 Score=218.68 Aligned_cols=205 Identities=19% Similarity=0.337 Sum_probs=168.5
Q ss_pred EEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeecccccc
Q 013113 4 IISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSY 83 (449)
Q Consensus 4 ii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 83 (449)
|..|.+|+||+.+-.++++. ++ .+ ...|.||++...++.+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 77899999999999999853 10 01 4678899988776655432 1
Q ss_pred ccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCC
Q 013113 84 RQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (449)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~ 163 (449)
+-++.++ ++...|+|++|..| ++..++.+|.||+.+|.||. |++++|||||||||+++.+++.+++ ++
T Consensus 75 ki~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-
Confidence 2122222 23446899997765 56778889999999999997 7999999999999999999999987 43
Q ss_pred cceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccccc
Q 013113 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLR 243 (449)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (449)
...+++++.|+. .|...+..|+.++|++|.+++|.++++||++|.++| +.+.+.. .|+.+|++|++.|.++|.++|
T Consensus 143 ~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 567788899986 477889999999999999999999999999999999 7777664 899999999999999999999
Q ss_pred cCCCCccchhhhhhcCC
Q 013113 244 FDGAINVDITEFQTNLV 260 (449)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (449)
+||.+|.|++++.+-|-
T Consensus 219 ~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 219 KPSLINLDFADVKSVMK 235 (378)
T ss_pred cCCceecCHHHHHHHhc
Confidence 99999999999987663
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.89 E-value=2.9e-23 Score=179.44 Aligned_cols=126 Identities=58% Similarity=1.029 Sum_probs=113.6
Q ss_pred CcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCccc
Q 013113 263 PRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQ 342 (449)
Q Consensus 263 p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 342 (449)
||+||++++++|+.......+++.++.+|++++|+++++|.+++|++|+|+++++++||++.+.++.+.+.+++.+.+..
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHH
Q 013113 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDH 393 (449)
Q Consensus 343 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~ 393 (449)
|++|+|+++|+++|.++|...+.+ ..++++|+|+|+|.+.|+++..
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999877543 5679999999999999999863
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.88 E-value=6.9e-23 Score=206.13 Aligned_cols=207 Identities=16% Similarity=0.302 Sum_probs=165.4
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccccc
Q 013113 3 EIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGS 82 (449)
Q Consensus 3 eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 82 (449)
.|..|.+|+||+.+-.++++. ++ .+ ...+.+|+|...++.+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~---------------------------~~---v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI---------------------------QG---VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998754 11 01 2568888887766654322
Q ss_pred cccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcC
Q 013113 83 YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (449)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp 162 (449)
.+-++.++ ++...|+|++|. .|++..++..+.||+.+|.||.+ +++++||||||||.++ ++..+..+|+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC
Confidence 22222222 234458999977 46788899999999999999988 9999999999999999 5555656665
Q ss_pred CcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccccc
Q 013113 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSL 242 (449)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (449)
+++++|+|.+...|..+++||+.++|++|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55666665555578899999999999999999999999999999999977777655 89999999999999999999
Q ss_pred ccCCCCccchhhhhhcCC
Q 013113 243 RFDGAINVDITEFQTNLV 260 (449)
Q Consensus 243 r~~~~~~~~l~~~~~~L~ 260 (449)
++||.+|.|+.++.+-|-
T Consensus 204 ~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 204 TKPGLINLDFADVKTVMS 221 (384)
T ss_pred hcCCcccCCHHHHHHHHh
Confidence 999999999999876553
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.84 E-value=1.5e-20 Score=171.50 Aligned_cols=132 Identities=26% Similarity=0.391 Sum_probs=102.7
Q ss_pred CCccccccccch-hhHHHHHHH-HHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcce-eeEEEecCCCC
Q 013113 101 NNFARGHYTVGK-EIVDLCLDR-VRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK-LGFTIYPSPQV 177 (449)
Q Consensus 101 nnwa~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i-~~~~v~P~~~~ 177 (449)
.+|..|.-.... +..+++.|+ ||.++|+||++||||++.++.+|+| |+++.++|+||||||++.+ +++++.+....
T Consensus 41 d~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~ 119 (180)
T PF14881_consen 41 DTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSSS 119 (180)
T ss_pred ccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCcccc
Confidence 456666533322 334566665 9999999999999999999999997 9999999999999999996 66665544321
Q ss_pred Cc-----ccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccccccc
Q 013113 178 ST-----AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRF 244 (449)
Q Consensus 178 ~~-----~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 244 (449)
.. ...+.+|.++++..|.++|++++|+.... +..+..+...++|.+|.++|.|+|.
T Consensus 120 ~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 120 SRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 11 12456899999999999999999998311 2345569999999999999999984
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.46 E-value=4e-13 Score=132.92 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=129.0
Q ss_pred cCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCC
Q 013113 98 DAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV 177 (449)
Q Consensus 98 gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~ 177 (449)
|+|.| ...|++..++..+.|+..++..| -++++.++|||||+|.++.+++.+++ .....++++++|+..
T Consensus 70 GaGa~-----P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~- 138 (338)
T COG0206 70 GAGAN-----PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF- 138 (338)
T ss_pred CCCCC-----cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh-
Confidence 56655 77789999999999999988777 46889999999999999999999998 478888999999874
Q ss_pred CcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhccccccccCCCCccchhhhhh
Q 013113 178 STAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQT 257 (449)
Q Consensus 178 ~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~ 257 (449)
|.....-|+..++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||.+|.|+.++.+
T Consensus 139 -EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~ 215 (338)
T COG0206 139 -EGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRT 215 (338)
T ss_pred -cCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHH
Confidence 666778899999999999999999999999988764 3222 2368888999999999999999999999999999987
Q ss_pred cCCC
Q 013113 258 NLVP 261 (449)
Q Consensus 258 ~L~p 261 (449)
-+-.
T Consensus 216 vm~~ 219 (338)
T COG0206 216 VMKG 219 (338)
T ss_pred HHhc
Confidence 6655
No 31
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.42 E-value=1.3e-13 Score=116.95 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=51.3
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCC----CCCcCccceeeCCCCce
Q 013113 2 REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETS----AGRHVPRAVFVDLEPTV 74 (449)
Q Consensus 2 ~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~llvD~e~~~ 74 (449)
|||||||+|+.+|+||+||||+ ||..+..+..... ...+++++|+++. ..+|+||+|++|+....
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 7999999999999999999998 6766654432110 2457899999863 45999999999997664
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.36 E-value=1.8e-07 Score=79.28 Aligned_cols=114 Identities=25% Similarity=0.399 Sum_probs=85.6
Q ss_pred CccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHH--HhcCCCCCCcccCCCCCceeeeeecccccCCh
Q 013113 248 INVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITN--AVFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 325 (449)
Q Consensus 248 ~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (449)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 889999998762 34456666666 7888887776655543 677665 6788
Q ss_pred hhHHHHHHhhhccCc-ccccccCC-CCceeeecCCCCccCCCCCcccccceeEEeec-ChhhHHHHHHHH
Q 013113 326 KDVNAAVATIKTKRT-VQFVDWCP-TGFKCGINYQPPTVVPGGDLAKVQRAVCMISN-NTAVAEVFSRID 392 (449)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l~ 392 (449)
.++.+.+..++.+.. ..|+.|.| ..+++ ..+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~------------------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL------------------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC------------------CCCcEEEEEEecccCccccccC
Confidence 899998888877655 77889988 33321 134678999 999999988763
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.77 E-value=0.00034 Score=70.83 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=62.8
Q ss_pred ccCcccCCCCcccccccc---chhhHHHHHHHHHhhhh-----hcC--CCCCeeEEeeCCCCccccchhHHHHHhhhhc-
Q 013113 93 ISGKEDAANNFARGHYTV---GKEIVDLCLDRVRKLSD-----NCT--GLQGFLVFNAVGGGTGSGLGSLLLERLSVDY- 161 (449)
Q Consensus 93 ~~~~~gsgnnwa~G~~~~---g~~~~~~~~d~ir~~~E-----~cD--~lqgf~~~~sl~GGtGSG~~~~l~e~l~dey- 161 (449)
.....|+|...+.|.... -.++.+.+.+.++..++ ... .+ -++|+.|++||||||+---++-.||+.+
T Consensus 99 ~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~V~Vv~SlaGGTGSG~~lDia~~lr~~~~ 177 (345)
T PF13809_consen 99 TPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGL-NVFVVGSLAGGTGSGMFLDIAYLLRDILK 177 (345)
T ss_pred CchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCc-EEEEEEecCCccchhHHHHHHHHHHHHhh
Confidence 445568888877776433 22334444444442111 110 11 2688999999999999888888888866
Q ss_pred ----CCcceeeEEEecCCCCCc---ccchhhHHHHHHHHhh
Q 013113 162 ----GKKSKLGFTIYPSPQVST---AVVEPYNSVLSTHSLL 195 (449)
Q Consensus 162 ----p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~ 195 (449)
....+..+.++|....+. .....-|+.=+|.+|.
T Consensus 178 ~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 178 QPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred cccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 456688999999843221 1333456666666554
No 34
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=72.42 E-value=14 Score=33.68 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHH
Q 013113 114 IVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 (449)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (449)
+...+.+.|+..+|+ .+. -++.+.+-|+- -.++.++-.|+.+||...+ .+++|+...+.. -+-..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~--W~~~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNN--WNEANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTT--S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhc--CCHHHHHHHHH
Confidence 455566677777775 233 23333333332 3477778889999997544 778898643321 11123345667
Q ss_pred hhhcCCeeEEecCh
Q 013113 194 LLEHTDVAVLLDNE 207 (449)
Q Consensus 194 l~e~~d~~i~~~N~ 207 (449)
|.+.||-++++...
T Consensus 98 il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 98 ILEQADFVVVVSER 111 (177)
T ss_dssp HHHH-SEEEESSSS
T ss_pred HHHhCCEEEEccCC
Confidence 77788888888665
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=69.57 E-value=4.5 Score=34.70 Aligned_cols=41 Identities=17% Similarity=0.428 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccc-hhHHHHHhhhh
Q 013113 116 DLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGL-GSLLLERLSVD 160 (449)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~-~~~l~e~l~de 160 (449)
+...++|+..+++++. +|++++.+| ||| =+ ....+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gss--p~n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSA--EMNAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CCh--HHHHHHHHHhcCCC
Confidence 4456889999999999 999999999 765 24 33345555444
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=66.92 E-value=6.9 Score=32.73 Aligned_cols=32 Identities=16% Similarity=0.409 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCc
Q 013113 114 IVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGT 145 (449)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGt 145 (449)
-.+.+.+++++.+++.+.-+|++++.+++|||
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 34567778888888888889999999999986
No 37
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=60.59 E-value=7.6 Score=33.36 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=31.5
Q ss_pred CccccchhHHHHHhhhhcCC-cceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCee
Q 013113 144 GTGSGLGSLLLERLSVDYGK-KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVA 201 (449)
Q Consensus 144 GtGSG~~~~l~e~l~deyp~-~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~ 201 (449)
|-|.|+|..+++.||.++|+ ..+++++. |++-+-.-|...+|..
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~g 51 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANEG 51 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCCc
Confidence 45668999999999999998 55655543 6666666666555543
No 38
>PRK13660 hypothetical protein; Provisional
Probab=60.04 E-value=35 Score=31.29 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHH
Q 013113 114 IVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 (449)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (449)
+...+...|+..+|+ .+.=|++-..+ |+- =.++.++-.|+.+||...+ .+++|+...++. -.-..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wfi~ggal--G~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~--W~e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWVIISGQL--GVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGEN--WNEANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEECCcc--hHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhc--CCHHHHHHHHH
Confidence 445566667777774 34322222111 111 2377778889999996554 567887643221 11112234456
Q ss_pred hhhcCCeeEEecChhhHhhhccCCCCCCC-CcchhhHHHHHHHhcccc
Q 013113 194 LLEHTDVAVLLDNEAIYDICRRSLDIERP-TYTNLNRLISQIISSLTT 240 (449)
Q Consensus 194 l~e~~d~~i~~~N~~l~~~~~~~~~~~~~-~~~~~N~~ia~~i~~~t~ 240 (449)
|...||-++.+....- ++| .|..-|+.+...-..+.+
T Consensus 98 i~~~aD~v~~vs~~~y----------~~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 98 ILKQADFVKSISKRPY----------ESPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred HHHhCCEEEEecCCCC----------CChHHHHHHHHHHHHccCeEEE
Confidence 6778899888854311 011 256677766665544444
No 39
>PLN02847 triacylglycerol lipase
Probab=57.67 E-value=11 Score=40.58 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=64.9
Q ss_pred cccccccCCCCCcCccc-eeeCCCCceeeeccccccc--c-c---------cCccccccCcccCCC----Cccccccccc
Q 013113 49 FNTFFSETSAGRHVPRA-VFVDLEPTVIDEVRTGSYR--Q-L---------FHPEQLISGKEDAAN----NFARGHYTVG 111 (449)
Q Consensus 49 ~~~~f~e~~~~~~~pR~-llvD~e~~~i~~i~~~~~~--~-~---------~~~~~~~~~~~gsgn----nwa~G~~~~g 111 (449)
-|+++...+++.|.|.- |++|-+.+.|=-...|... . + |++.. ....|..+ .=-+|++...
T Consensus 153 eDVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~--l~~gG~~n~~~G~AH~Gml~AA 230 (633)
T PLN02847 153 EDVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSV--LHDGGVSNLVLGYAHCGMVAAA 230 (633)
T ss_pred HHEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCccc--ccccCcccCcCCccCccHHHHH
Confidence 35666656667777665 7888766655433333321 0 0 11111 11111111 1133444444
Q ss_pred hhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhh--hcCCcceeeEE
Q 013113 112 KEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 170 (449)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~d--eyp~~~i~~~~ 170 (449)
+.+.+.+...|++.+++|...+=+++-||||||+ ++.+.-.|++ .|++...++|+
T Consensus 231 rwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 231 RWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 5666777788888889888777777789998865 4444445554 46665555555
No 40
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=57.47 E-value=16 Score=31.82 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=39.6
Q ss_pred cccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEec
Q 013113 106 GHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173 (449)
Q Consensus 106 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P 173 (449)
|++.....+...+...+++...++..-+-+++-||+||+ ++..+...++...+.+.+-.++.-|
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCceEEEEeCC
Confidence 555556666777777777776666666667777999875 5556666666654333333333333
No 41
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=56.95 E-value=15 Score=31.09 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhhcCCCCCeeEEeeCCCCc
Q 013113 115 VDLCLDRVRKLSDNCTGLQGFLVFNAVGGGT 145 (449)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGt 145 (449)
.+.+.+++++.+++.+.-+|++++.++-|||
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 3556777777788877778999999999986
No 42
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=54.92 E-value=17 Score=30.50 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhcCCCCCeeEEeeCCCCcc
Q 013113 115 VDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTG 146 (449)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 146 (449)
.+++.+++++.+++.+.=+|++|+.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677778888887776789999999999973
No 43
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=49.44 E-value=16 Score=34.26 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=40.4
Q ss_pred CccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCC
Q 013113 102 NFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (449)
Q Consensus 102 nwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~ 163 (449)
...+|++.....+.+.+...++...+++...+=++.-|||||+ +++.+.-.|+..++.
T Consensus 98 ~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~ 155 (229)
T cd00519 98 KVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPG 155 (229)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCC
Confidence 3456766666677777788888888877766666777999874 666666666666533
No 44
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=47.81 E-value=15 Score=31.19 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=35.9
Q ss_pred cccccccch-hhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCC
Q 013113 104 ARGHYTVGK-EIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (449)
Q Consensus 104 a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~ 163 (449)
..|++..-. ...+.+.+.|++..++.....=.+.-|||||+ ++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 345544444 66677888888877776543334445899774 677777777666544
No 45
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=47.18 E-value=57 Score=32.90 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=55.7
Q ss_pred cchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHH
Q 013113 110 VGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVL 189 (449)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (449)
...+.+.++.+.|+... +..+||+|+|+..- ---++.+++.+-...++-.+++=+..|....+.....+...++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTDT---meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTDT---MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccch---HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566667777777765 45889999997653 3467777877655545556666677887654433334444444
Q ss_pred HHHHhhhcCCeeEEecChhhHh
Q 013113 190 STHSLLEHTDVAVLLDNEAIYD 211 (449)
Q Consensus 190 sl~~l~e~~d~~i~~~N~~l~~ 211 (449)
.+..-.... .|.++=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 443222223 455544555543
No 46
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=46.29 E-value=24 Score=28.66 Aligned_cols=52 Identities=31% Similarity=0.509 Sum_probs=39.6
Q ss_pred eecChhhHHHHHHH-------HHHHHHHhhccccccccccCCCCh--hhHHHHHHHHHHHHHHHHH
Q 013113 378 ISNNTAVAEVFSRI-------DHKFDLMYAKRAFVHWYVGEGMEE--GEFSEAREDLAALEKDYEE 434 (449)
Q Consensus 378 l~N~t~i~~~l~~l-------~~~~~~~~~rkAflH~Y~~~Gmee--~eF~Ea~~~l~~li~~Y~~ 434 (449)
++|.++|...|..| ++.-.++--+|+|+ ||+.+ .+..||+..|+.|..+++.
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~ 88 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHRE 88 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889988888765 56666667777555 57743 6899999999999999974
No 47
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=45.69 E-value=20 Score=30.71 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhhhcCC-CCCeeEEeeCCCCccccchh-HHHHHhhhhcCCcceeeEEEec
Q 013113 116 DLCLDRVRKLSDNCTG-LQGFLVFNAVGGGTGSGLGS-LLLERLSVDYGKKSKLGFTIYP 173 (449)
Q Consensus 116 ~~~~d~ir~~~E~cD~-lqgf~~~~sl~GGtGSG~~~-~l~e~l~deyp~~~i~~~~v~P 173 (449)
....++|++.+|+++. =+|++++.++ ||+ =+.. ..++.++. ++..+++..=+|
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~--~~~~~v~g~nlP 96 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED--EDRDKVHLVDAP 96 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc--ccccEEEEechh
Confidence 3456788888999866 7899999999 764 2322 45555543 333344444334
No 48
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=41.90 E-value=84 Score=31.32 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=49.7
Q ss_pred cchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCC-cccchhhHHH
Q 013113 110 VGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVS-TAVVEPYNSV 188 (449)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 188 (449)
...+.+.++.+.|++.+++ .+||+|+|+..- --.++.+++.+-+..++-.+++=+..|....+ +....-++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTDT---me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTDT---MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--STT---HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCchH---HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3456667777778777744 899999996643 24566667766555556667777788876533 3333334444
Q ss_pred HHHHHhhhcCCeeEEecChhhH
Q 013113 189 LSTHSLLEHTDVAVLLDNEAIY 210 (449)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~~l~ 210 (449)
....+ .+..-.+++|++ .++
T Consensus 128 ~~A~~-~~~~GV~v~f~~-~i~ 147 (313)
T PF00710_consen 128 RVAAS-PAGPGVLVVFNG-RIY 147 (313)
T ss_dssp HHHHS-GGTSSEEEEETT-EEE
T ss_pred HHHhc-ccCCceEEEeCC-Ccc
Confidence 33333 234444555544 454
No 49
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=39.71 E-value=1e+02 Score=23.84 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhc--CCCCCeeEEeeCC----CCccccchhHHHHHhhhhcCCcceeeEEEecC
Q 013113 116 DLCLDRVRKLSDNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTIYPS 174 (449)
Q Consensus 116 ~~~~d~ir~~~E~c--D~lqgf~~~~sl~----GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~ 174 (449)
+++...++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~~ 70 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAEP 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--C
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecCC
Confidence 34555555666555 3567889999988 554 77788888877666666666654443
No 50
>PLN02408 phospholipase A1
Probab=37.05 E-value=65 Score=32.92 Aligned_cols=62 Identities=10% Similarity=0.275 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhhhhhcCCCC-CeeE-EeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCC
Q 013113 113 EIVDLCLDRVRKLSDNCTGLQ-GFLV-FNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVS 178 (449)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~lq-gf~~-~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~ 178 (449)
.+.+.+.+.|++.+++...-+ .+.+ -||||| .++...+-.|+..++..+.+.+..+=.+..+
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGG----ALAtLaA~dl~~~~~~~~~V~v~tFGsPRVG 242 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGA----ALATLTAYDIKTTFKRAPMVTVISFGGPRVG 242 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHH----HHHHHHHHHHHHhcCCCCceEEEEcCCCCcc
Confidence 467778888888888764322 2444 589976 4888888888888776655555555455444
No 51
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=36.01 E-value=37 Score=32.05 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=21.6
Q ss_pred EEeeCCCCccccchhHHHHHhhhhcCCc
Q 013113 137 VFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (449)
Q Consensus 137 ~~~sl~GGtGSG~~~~l~e~l~deyp~~ 164 (449)
++-+++||+|||= +.+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5668999999998 66788888888744
No 52
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=35.21 E-value=1.2e+02 Score=30.49 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred chhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHH
Q 013113 111 GKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLS 190 (449)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 190 (449)
..+.+..+.+.|++..++ .+||+|+|+..- --.++..+..+-+. ++-.++|=+..|....+....++...++.
T Consensus 61 t~~~w~~l~~~I~~~~~~---~dGiVVtHGTDT---meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~ 133 (323)
T cd00411 61 TDEDWLKIAKDINELYDS---YDGFVITHGTDT---MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVY 133 (323)
T ss_pred CHHHHHHHHHHHHHHHHh---cCcEEEEcCccc---HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 456666777777776653 889999996642 24566667665555 56566777777876544444444445554
Q ss_pred HHHhhh--cCCeeEEecChhhH
Q 013113 191 THSLLE--HTDVAVLLDNEAIY 210 (449)
Q Consensus 191 l~~l~e--~~d~~i~~~N~~l~ 210 (449)
+..-.+ .....|+|++. ++
T Consensus 134 ~A~~~~~~~~gV~V~f~~~-i~ 154 (323)
T cd00411 134 VAANYDSRGRGVLVVFNDR-IF 154 (323)
T ss_pred HHcCcccCCCeEEEEECCE-Ee
Confidence 443322 34455666544 44
No 53
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=34.57 E-value=21 Score=34.71 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHh
Q 013113 117 LCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERL 157 (449)
Q Consensus 117 ~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l 157 (449)
++++++|+.+++-..+ +|+|.|+|++++..|.=
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~g 34 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEKG 34 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHhc
Confidence 6888999999886655 67888999999888764
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=29.56 E-value=67 Score=31.36 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=29.9
Q ss_pred CCccccccccchhhHHHHHH-HHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEE
Q 013113 101 NNFARGHYTVGKEIVDLCLD-RVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT 170 (449)
Q Consensus 101 nnwa~G~~~~g~~~~~~~~d-~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~ 170 (449)
-.|+.|||..+.+-.++.+. ++...+|+++ ++.=.=+-++|.|+| |++-.+ ...| +..+.++.
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~-l~~G~~vLDiGcGwG-~~~~~~----a~~~-g~~v~git 92 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLG-LKPGDRVLDIGCGWG-GLAIYA----AERY-GCHVTGIT 92 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT---TT-EEEEES-TTS-HHHHHH----HHHH---EEEEEE
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhC-CCCCCEEEEeCCCcc-HHHHHH----HHHc-CcEEEEEE
Confidence 45677888777665666555 5777788876 544466778888876 544444 4455 34444333
No 55
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=28.31 E-value=45 Score=27.01 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCeeEEeeCCCCccccchhHHHHHhhh
Q 013113 133 QGFLVFNAVGGGTGSGLGSLLLERLSV 159 (449)
Q Consensus 133 qgf~~~~sl~GGtGSG~~~~l~e~l~d 159 (449)
.+|-|+.+.+.|+|+.+.+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 467999999999999999999888765
No 56
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=28.00 E-value=1.5e+02 Score=29.93 Aligned_cols=94 Identities=13% Similarity=-0.007 Sum_probs=56.4
Q ss_pred chhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHH
Q 013113 111 GKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLS 190 (449)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 190 (449)
..+.+..+.+.|+...+. .+||+|+|+..- =-.++..++.+-+. ++-.++|=+..|....+.....+...++.
T Consensus 60 tp~~w~~la~~I~~~~~~---~dG~VVtHGTDT---me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~ 132 (336)
T TIGR00519 60 KPEYWVEIAEAVKKEYDD---YDGFVITHGTDT---MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVR 132 (336)
T ss_pred CHHHHHHHHHHHHHHHhc---CCeEEEccCCch---HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 456667777778776653 889999997653 35677777765554 56567777777876544344444444444
Q ss_pred HHHhhhc-----CCeeEEecChhhHh
Q 013113 191 THSLLEH-----TDVAVLLDNEAIYD 211 (449)
Q Consensus 191 l~~l~e~-----~d~~i~~~N~~l~~ 211 (449)
+..-.+. -..|+++-|+.+..
T Consensus 133 ~A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 133 AATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred HHcCccccccccCceeEEEccCeEee
Confidence 4432221 22455555666654
No 57
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=27.99 E-value=27 Score=16.71 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=5.8
Q ss_pred hcCCCCCc
Q 013113 257 TNLVPYPR 264 (449)
Q Consensus 257 ~~L~p~p~ 264 (449)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 35788887
No 58
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.54 E-value=1.7e+02 Score=28.23 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=41.5
Q ss_pred HHHHhhhhhcCCCCCeeEEeeCCCCcccc--chhHHHHHh---hhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHh
Q 013113 120 DRVRKLSDNCTGLQGFLVFNAVGGGTGSG--LGSLLLERL---SVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSL 194 (449)
Q Consensus 120 d~ir~~~E~cD~lqgf~~~~sl~GGtGSG--~~~~l~e~l---~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 194 (449)
++++..++. ..||+.+.|+.|-||.. +...+.+.+ |...+....+.++| ++.-....+
T Consensus 154 eri~~i~~~---~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI--------------~~~e~~~~~ 216 (256)
T TIGR00262 154 ERLKQIAEK---SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGI--------------SKPEQVKQA 216 (256)
T ss_pred HHHHHHHHh---CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCC--------------CCHHHHHHH
Confidence 455555554 56889998888888863 555555554 44332211111112 223344567
Q ss_pred hhc-CCeeEEecChhhHhhh
Q 013113 195 LEH-TDVAVLLDNEAIYDIC 213 (449)
Q Consensus 195 ~e~-~d~~i~~~N~~l~~~~ 213 (449)
.++ +|++++= +++.+..
T Consensus 217 ~~~GADgvVvG--Saiv~~~ 234 (256)
T TIGR00262 217 IDAGADGVIVG--SAIVKII 234 (256)
T ss_pred HHcCCCEEEEC--HHHHHHH
Confidence 777 9988774 4454443
No 59
>PF03283 PAE: Pectinacetylesterase
Probab=25.33 E-value=1.4e+02 Score=30.45 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHHHhh-hhhcCCCCCeeEEeeCCCCccccchhHH-HHHhhhhcCC
Q 013113 107 HYTVGKEIVDLCLDRVRKL-SDNCTGLQGFLVFNAVGGGTGSGLGSLL-LERLSVDYGK 163 (449)
Q Consensus 107 ~~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~~~~sl~GGtGSG~~~~l-~e~l~deyp~ 163 (449)
.|..|....+.+++.|... +.+ .+-+++..+-+|| +|+.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~---a~~vlltG~SAGG----~g~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPN---AKQVLLTGCSAGG----LGAILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcc---cceEEEeccChHH----HHHHHHHHHHHHHhcc
Confidence 4556888888888877666 443 3444776666665 55555 7889999985
No 60
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=24.83 E-value=2.2e+02 Score=28.54 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=52.0
Q ss_pred chhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHH
Q 013113 111 GKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLS 190 (449)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 190 (449)
..+.+.++.+.|+..+.. +..+||+|+|+..- --.++..+..+-+..++=.+++=+..|....+.........++.
T Consensus 58 t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTDT---meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALAD-DGYDGVVVTHGTDT---LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhcc-CCCCEEEEecCCcc---HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 345555566666554432 56899999996643 24566667665555455566666677876534333333333333
Q ss_pred HHHhhh--cCCeeEEecChhhHh
Q 013113 191 THSLLE--HTDVAVLLDNEAIYD 211 (449)
Q Consensus 191 l~~l~e--~~d~~i~~~N~~l~~ 211 (449)
+..-.+ .. .|+++=|+.++.
T Consensus 134 ~A~~~~a~~~-GV~V~f~~~i~~ 155 (323)
T smart00870 134 VAASPEARGR-GVLVVFNDEIHR 155 (323)
T ss_pred HHcCcccCCC-EEEEEECCEeee
Confidence 332222 22 444444555553
No 61
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=24.46 E-value=88 Score=31.40 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhhhcCCCCCeeEEeeCCCCcc
Q 013113 115 VDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTG 146 (449)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 146 (449)
.+++.+++++.+++.+.-+|++++.++-|||=
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677777777888777789999999999974
No 62
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=22.73 E-value=2.6e+02 Score=29.00 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCCCCC-cccchhhHHHH
Q 013113 111 GKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVS-TAVVEPYNSVL 189 (449)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~l 189 (449)
..+.+..+.+.|++.++ +..+||+|+|+..- --.++..+..+-+..|+=.+++=+..|....+ +....-++++.
T Consensus 121 tp~~w~~La~~I~~~~~--~~~dGvVVtHGTDT---M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~ 195 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALK--EGADGVVVAHGTDT---MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVR 195 (404)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCcEEEecCChh---HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHH
Confidence 45666777777877765 34689999996642 34566767665444455556666677765433 33333344443
Q ss_pred HHHHhhhcCCeeEEecCh
Q 013113 190 STHSLLEHTDVAVLLDNE 207 (449)
Q Consensus 190 sl~~l~e~~d~~i~~~N~ 207 (449)
+..- ..+-..|+|++.
T Consensus 196 -~A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 196 -AATS-PIAEVTVVMHGE 211 (404)
T ss_pred -HHhC-CCCcEEEEECCc
Confidence 3322 345566666654
No 63
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=22.67 E-value=1.2e+02 Score=28.42 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCcceeeEEEecCC
Q 013113 114 IVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSP 175 (449)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~~~~v~P~~ 175 (449)
+.+...+.-|...+.+ ++|+ .|||+ | +++...+---+....+++|.|..
T Consensus 32 ~~~~a~~lg~~la~~g-----~~V~--tGG~~--G----iMea~~~gA~~~gg~~vGi~p~~ 80 (205)
T COG1611 32 YYELARELGRELAKRG-----LLVI--TGGGP--G----VMEAVARGALEAGGLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHHHHhCC-----cEEE--eCCch--h----hhhHHHHHHHHcCCeEEEecCCC
Confidence 4455555666666665 4554 23333 4 45555544445677888999864
No 64
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=21.87 E-value=1.8e+02 Score=29.64 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=69.6
Q ss_pred cccccCcccCCCCcccccccc--chhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhhcCCccee
Q 013113 90 EQLISGKEDAANNFARGHYTV--GKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKL 167 (449)
Q Consensus 90 ~~~~~~~~gsgnnwa~G~~~~--g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~deyp~~~i~ 167 (449)
+|-++++.|+...|. ... -.+..+++...++.+.|.-..--|..+..-.|+|.+.|+|.-|+-.+.-++
T Consensus 195 ~nPL~G~~GAs~vFG---PQKGat~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l------ 265 (378)
T COG1929 195 DNPLCGPQGASAVFG---PQKGATPEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL------ 265 (378)
T ss_pred CCCCcCCCCceeeec---CccCCCHHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc------
Confidence 344556666655442 222 247788888899998887776667777777888888899999988776443
Q ss_pred eEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEE----ecChhhH
Q 013113 168 GFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVL----LDNEAIY 210 (449)
Q Consensus 168 ~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~----~~N~~l~ 210 (449)
.| -++..-.++-|....+-||+||. +|++.+.
T Consensus 266 ----~~-------Gi~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 266 ----KS-------GIEIVLEATNLEDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred ----cc-------cHHHHHHHhCHHHhhccCCEEEeCCCcccccccC
Confidence 11 12334456677888889999996 6777764
No 65
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=21.85 E-value=63 Score=32.73 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhh-cCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113 116 DLCLDRVRKLSDN-CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (449)
Q Consensus 116 ~~~~d~ir~~~E~-cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de 160 (449)
.+.-+.||..+.. |.-+ ++||||||=++.|-..+..-
T Consensus 160 ~~~a~~L~~av~~r~NIL--------isGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 160 RRAAKFLRRAVGIRCNIL--------ISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred HHHHHHHHHHHhhceeEE--------EeCCCCCCHHHHHHHHHhcC
Confidence 3444556665553 3322 67999999888776665433
No 66
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.37 E-value=2.2e+02 Score=27.66 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=38.1
Q ss_pred HHHHhhhhhcCCCCCeeEEeeCCCCcccc--chh---HHHHHhhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHh
Q 013113 120 DRVRKLSDNCTGLQGFLVFNAVGGGTGSG--LGS---LLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSL 194 (449)
Q Consensus 120 d~ir~~~E~cD~lqgf~~~~sl~GGtGSG--~~~---~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 194 (449)
++|++.++. .+||+.+.|.-|=||.. +.. .+++.+|........+.++| |+.-....+
T Consensus 158 eri~~i~~~---a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI--------------~~~e~~~~~ 220 (263)
T CHL00200 158 SRIQKIARA---APGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGI--------------STSEQIKQI 220 (263)
T ss_pred HHHHHHHHh---CCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCc--------------CCHHHHHHH
Confidence 566666555 46889999988888863 222 23444454322222233333 223344667
Q ss_pred hhc-CCeeEE
Q 013113 195 LEH-TDVAVL 203 (449)
Q Consensus 195 ~e~-~d~~i~ 203 (449)
.++ +|++|+
T Consensus 221 ~~~GADGvVV 230 (263)
T CHL00200 221 KGWNINGIVI 230 (263)
T ss_pred HhcCCCEEEE
Confidence 788 999887
No 67
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.19 E-value=41 Score=29.21 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=18.5
Q ss_pred hhccccccccccCCCChhhHHHHHHHHHHHH
Q 013113 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALE 429 (449)
Q Consensus 399 ~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~li 429 (449)
-+|.+|| ++-||.++|++||+....+-.
T Consensus 24 ~~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 24 EKKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 4567777 345999999999999876654
No 68
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.12 E-value=59 Score=19.77 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=9.0
Q ss_pred CCCccccchhHHH
Q 013113 142 GGGTGSGLGSLLL 154 (449)
Q Consensus 142 ~GGtGSG~~~~l~ 154 (449)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5778888875553
No 69
>PTZ00489 glutamate 5-kinase; Provisional
Probab=20.84 E-value=3.9e+02 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=29.3
Q ss_pred hhhhcCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecCh
Q 013113 157 LSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 207 (449)
Q Consensus 157 l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~ 207 (449)
..+.+.+..+.+.-+++....-....+..|+.-++..|.+. .+||+=|.
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44555555666666776543223334455888888888876 56666443
No 70
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=20.48 E-value=67 Score=28.99 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHH--HhhccccccccccCCCChhhHHHHHHHHHHHHHHHHHhc
Q 013113 383 AVAEVFSRIDHKFDL--MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436 (449)
Q Consensus 383 ~i~~~l~~l~~~~~~--~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~ 436 (449)
.|...+.+|.+-+.. =|..-.||+||++|..||.. .+.+|++.++-++
T Consensus 96 ~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~ag 145 (167)
T COG1528 96 KVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELAG 145 (167)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcC
Confidence 344444444444443 24566899999999986643 2335555555443
Done!