Query 013114
Match_columns 449
No_of_seqs 263 out of 2633
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 00:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02374 ArsA_ATPase: Anion-tr 100.0 1.3E-56 2.9E-61 447.6 24.2 283 49-367 1-304 (305)
2 COG0003 ArsA Predicted ATPase 100.0 1.4E-54 2.9E-59 432.8 27.2 294 48-378 1-313 (322)
3 KOG2825 Putative arsenite-tran 100.0 5.1E-44 1.1E-48 335.7 19.4 283 47-366 17-321 (323)
4 TIGR00345 arsA arsenite-activa 100.0 1.1E-41 2.5E-46 337.4 24.8 263 65-365 1-283 (284)
5 cd00550 ArsA_ATPase Oxyanion-t 100.0 1.1E-40 2.4E-45 325.3 23.0 235 50-363 1-253 (254)
6 cd02035 ArsA ArsA ATPase funct 99.9 1.2E-23 2.5E-28 200.8 19.7 201 51-340 1-217 (217)
7 cd02037 MRP-like MRP (Multiple 99.8 2.2E-18 4.8E-23 157.7 16.2 65 278-343 93-168 (169)
8 KOG3022 Predicted ATPase, nucl 99.8 2.4E-18 5.2E-23 165.3 13.9 189 48-342 47-257 (300)
9 PRK11670 antiporter inner memb 99.7 4.1E-17 8.8E-22 167.4 18.1 195 48-343 107-316 (369)
10 COG0489 Mrp ATPases involved i 99.7 1.1E-16 2.4E-21 157.2 18.1 172 47-318 56-230 (265)
11 cd02117 NifH_like This family 99.7 9E-17 1.9E-21 152.6 12.9 64 278-342 143-211 (212)
12 PRK13232 nifH nitrogenase redu 99.7 1.9E-16 4E-21 156.1 15.1 64 278-342 143-210 (273)
13 PRK13233 nifH nitrogenase redu 99.7 1.4E-16 3E-21 157.1 12.6 65 278-343 145-214 (275)
14 TIGR01969 minD_arch cell divis 99.7 6.5E-16 1.4E-20 149.3 16.7 47 50-98 2-51 (251)
15 PRK13236 nitrogenase reductase 99.7 4.6E-16 1E-20 155.3 15.0 41 48-90 5-45 (296)
16 PRK13235 nifH nitrogenase redu 99.7 7.2E-16 1.6E-20 152.0 15.1 44 49-95 2-47 (274)
17 PRK13230 nitrogenase reductase 99.7 4.5E-16 9.7E-21 153.9 13.5 46 49-96 1-48 (279)
18 cd02040 NifH NifH gene encodes 99.7 1.3E-15 2.8E-20 149.2 16.5 65 278-343 143-212 (270)
19 CHL00175 minD septum-site dete 99.7 2.4E-15 5.2E-20 148.7 18.5 48 49-98 16-66 (281)
20 PRK13185 chlL protochlorophyll 99.7 1.4E-15 3.1E-20 149.3 16.5 47 48-96 1-49 (270)
21 PRK13869 plasmid-partitioning 99.7 2.6E-15 5.5E-20 156.1 18.0 51 46-98 119-171 (405)
22 COG2894 MinD Septum formation 99.7 2.5E-16 5.3E-21 146.9 9.1 192 50-344 4-214 (272)
23 COG0455 flhG Antiactivator of 99.7 2.4E-15 5.3E-20 147.1 16.6 192 48-344 2-206 (262)
24 TIGR01281 DPOR_bchL light-inde 99.6 2.1E-15 4.5E-20 148.0 14.9 45 49-96 1-47 (268)
25 TIGR03029 EpsG chain length de 99.6 1.3E-15 2.8E-20 150.1 13.3 168 49-316 104-274 (274)
26 CHL00072 chlL photochlorophyll 99.6 4.6E-15 9.9E-20 147.7 16.5 44 49-95 1-46 (290)
27 TIGR01287 nifH nitrogenase iro 99.6 2.1E-15 4.5E-20 148.7 13.9 39 50-90 1-39 (275)
28 cd02032 Bchl_like This family 99.6 4.2E-15 9E-20 145.9 15.7 45 49-96 1-47 (267)
29 TIGR01007 eps_fam capsular exo 99.6 6.8E-15 1.5E-19 138.7 15.7 171 48-317 17-190 (204)
30 PRK13234 nifH nitrogenase redu 99.6 2.7E-15 5.9E-20 149.7 13.3 40 49-90 4-43 (295)
31 TIGR03018 pepcterm_TyrKin exop 99.6 7.5E-15 1.6E-19 139.0 14.2 167 48-315 35-207 (207)
32 cd03110 Fer4_NifH_child This p 99.6 3.2E-14 7E-19 131.1 17.9 43 50-98 1-46 (179)
33 TIGR03371 cellulose_yhjQ cellu 99.6 2.3E-14 5E-19 138.3 17.8 49 48-98 1-51 (246)
34 PRK10818 cell division inhibit 99.6 1.5E-14 3.3E-19 142.0 16.4 48 49-98 3-53 (270)
35 cd02036 MinD Bacterial cell di 99.6 1.8E-14 3.9E-19 131.8 15.3 63 279-342 87-152 (179)
36 TIGR01968 minD_bact septum sit 99.6 1.1E-14 2.4E-19 141.3 14.4 48 49-98 2-52 (261)
37 TIGR03815 CpaE_hom_Actino heli 99.6 1.1E-14 2.4E-19 146.9 14.8 50 47-98 92-144 (322)
38 TIGR03453 partition_RepA plasm 99.6 4.3E-14 9.4E-19 146.2 17.9 51 46-98 102-154 (387)
39 PRK13705 plasmid-partitioning 99.6 3.8E-14 8.3E-19 146.5 16.6 51 46-98 104-157 (388)
40 PRK13849 putative crown gall t 99.6 5.7E-14 1.2E-18 135.4 16.1 47 48-96 1-49 (231)
41 PHA02518 ParA-like protein; Pr 99.6 7.4E-14 1.6E-18 131.4 15.1 45 50-96 2-48 (211)
42 PF01656 CbiA: CobQ/CobB/MinD/ 99.6 5.3E-14 1.1E-18 130.4 13.6 38 51-90 1-38 (195)
43 cd02033 BchX Chlorophyllide re 99.5 1.4E-13 3E-18 138.9 17.2 50 47-98 29-81 (329)
44 TIGR02016 BchX chlorophyllide 99.5 9.8E-14 2.1E-18 138.6 15.4 38 51-90 2-39 (296)
45 PRK11519 tyrosine kinase; Prov 99.5 8.3E-14 1.8E-18 154.7 16.1 168 49-316 526-697 (719)
46 PRK10037 cell division protein 99.5 5.3E-14 1.2E-18 136.9 12.3 49 48-98 1-51 (250)
47 PHA02519 plasmid partition pro 99.5 2E-14 4.3E-19 148.5 9.2 52 45-98 103-157 (387)
48 COG1192 Soj ATPases involved i 99.5 6.4E-14 1.4E-18 136.7 12.2 49 48-98 2-53 (259)
49 TIGR01005 eps_transp_fam exopo 99.5 1.6E-13 3.4E-18 153.5 16.5 169 49-317 547-718 (754)
50 PRK13231 nitrogenase reductase 99.5 3.1E-13 6.7E-18 132.4 14.0 63 279-342 141-204 (264)
51 PRK09841 cryptic autophosphory 99.5 3.1E-13 6.6E-18 150.3 15.5 168 49-316 531-702 (726)
52 PF09140 MipZ: ATPase MipZ; I 99.4 4.6E-13 9.9E-18 128.3 8.8 46 50-97 2-50 (261)
53 COG3640 CooC CO dehydrogenase 99.4 1.6E-11 3.4E-16 116.4 18.7 48 51-100 2-52 (255)
54 COG1149 MinD superfamily P-loo 99.4 2.7E-12 5.8E-17 123.8 10.8 63 279-344 188-250 (284)
55 cd03111 CpaE_like This protein 99.4 8.3E-12 1.8E-16 105.9 11.8 38 51-90 2-40 (106)
56 PF06564 YhjQ: YhjQ protein; 99.3 9.5E-13 2.1E-17 127.0 6.2 51 48-100 1-53 (243)
57 cd02042 ParA ParA and ParB of 99.3 1.1E-11 2.3E-16 104.1 11.8 38 51-90 2-39 (104)
58 PF07015 VirC1: VirC1 protein; 99.3 1.1E-10 2.4E-15 111.3 16.6 41 48-90 1-41 (231)
59 cd06470 ACD_IbpA-B_like Alpha- 99.3 1E-11 2.3E-16 102.3 7.7 67 379-449 1-89 (90)
60 cd02038 FleN-like FleN is a me 99.2 1.3E-10 2.9E-15 103.2 13.5 37 51-89 2-38 (139)
61 PRK10743 heat shock protein Ib 99.2 6E-11 1.3E-15 105.2 9.6 68 378-449 34-122 (137)
62 PF00142 Fer4_NifH: 4Fe-4S iro 99.2 2.9E-10 6.3E-15 110.1 14.4 87 279-368 144-247 (273)
63 PRK11597 heat shock chaperone 99.2 1E-10 2.2E-15 104.2 9.7 69 377-449 31-120 (142)
64 COG0071 IbpA Molecular chapero 99.2 8.1E-11 1.8E-15 105.6 8.4 71 377-449 39-131 (146)
65 TIGR00064 ftsY signal recognit 99.2 2.8E-09 6.1E-14 105.3 19.7 40 48-89 71-110 (272)
66 cd06471 ACD_LpsHSP_like Group 99.2 9.2E-11 2E-15 97.0 7.7 67 380-449 2-92 (93)
67 cd06472 ACD_ScHsp26_like Alpha 99.1 3.7E-10 8.1E-15 93.3 7.8 68 381-449 2-91 (92)
68 COG1348 NifH Nitrogenase subun 99.1 2.1E-09 4.5E-14 101.7 13.4 65 279-344 145-214 (278)
69 PF13614 AAA_31: AAA domain; P 99.0 4E-10 8.6E-15 101.1 7.2 48 50-99 1-52 (157)
70 cd02034 CooC The accessory pro 99.0 7.6E-10 1.6E-14 95.5 8.3 44 52-97 2-46 (116)
71 cd06475 ACD_HspB1_like Alpha c 99.0 5.4E-10 1.2E-14 91.3 6.9 62 386-449 10-85 (86)
72 PRK10867 signal recognition pa 99.0 1.9E-08 4E-13 105.3 20.1 40 48-89 99-139 (433)
73 cd06481 ACD_HspB9_like Alpha c 99.0 5.5E-10 1.2E-14 91.5 6.8 62 386-449 7-86 (87)
74 cd06498 ACD_alphaB-crystallin_ 99.0 5.9E-10 1.3E-14 90.7 6.8 66 382-449 3-82 (84)
75 cd06476 ACD_HspB2_like Alpha c 99.0 7.6E-10 1.7E-14 89.8 6.6 63 385-449 6-82 (83)
76 cd06479 ACD_HspB7_like Alpha c 99.0 8.8E-10 1.9E-14 89.0 6.2 62 386-449 8-80 (81)
77 PRK10416 signal recognition pa 99.0 5.2E-08 1.1E-12 98.4 20.1 40 48-89 113-152 (318)
78 cd06497 ACD_alphaA-crystallin_ 99.0 1.3E-09 2.9E-14 89.0 7.0 62 386-449 10-85 (86)
79 cd06478 ACD_HspB4-5-6 Alpha-cr 99.0 1.6E-09 3.6E-14 87.9 7.1 64 384-449 5-82 (83)
80 TIGR00959 ffh signal recogniti 98.9 6.6E-08 1.4E-12 101.1 19.7 40 48-89 98-138 (428)
81 cd06482 ACD_HspB10 Alpha cryst 98.9 2.6E-09 5.6E-14 87.4 6.7 63 385-449 7-86 (87)
82 cd06477 ACD_HspB3_Like Alpha c 98.9 3.4E-09 7.3E-14 86.0 6.6 60 386-447 7-80 (83)
83 cd06464 ACD_sHsps-like Alpha-c 98.9 4E-09 8.7E-14 85.3 6.9 62 386-449 7-87 (88)
84 TIGR01425 SRP54_euk signal rec 98.9 9.8E-08 2.1E-12 99.5 17.8 40 48-89 99-138 (429)
85 cd06526 metazoan_ACD Alpha-cry 98.8 5E-09 1.1E-13 84.9 6.2 62 386-449 7-82 (83)
86 cd03115 SRP The signal recogni 98.8 2.1E-07 4.6E-12 85.2 17.7 37 51-89 2-38 (173)
87 PRK13768 GTPase; Provisional 98.8 3.6E-08 7.9E-13 96.4 12.0 41 48-90 1-41 (253)
88 PRK13886 conjugal transfer pro 98.8 1.6E-08 3.4E-13 97.8 9.1 47 49-97 2-49 (241)
89 TIGR00347 bioD dethiobiotin sy 98.8 7E-08 1.5E-12 87.8 12.7 36 279-315 131-166 (166)
90 cd01983 Fer4_NifH The Fer4_Nif 98.8 7.4E-08 1.6E-12 78.1 11.2 33 51-83 1-33 (99)
91 PRK00771 signal recognition pa 98.8 1.9E-07 4.2E-12 97.9 17.1 40 48-89 94-133 (437)
92 PRK11889 flhF flagellar biosyn 98.8 1.7E-07 3.8E-12 96.1 16.0 39 49-89 241-279 (436)
93 PF00011 HSP20: Hsp20/alpha cr 98.8 2.3E-08 4.9E-13 83.8 7.4 62 386-449 7-86 (102)
94 PF00448 SRP54: SRP54-type pro 98.8 3.2E-07 7E-12 86.4 15.8 39 49-89 1-39 (196)
95 cd03114 ArgK-like The function 98.7 3.3E-08 7.2E-13 88.9 8.4 37 52-90 2-38 (148)
96 PRK00090 bioD dithiobiotin syn 98.6 6.6E-07 1.4E-11 85.3 14.5 66 278-345 134-204 (222)
97 PRK12726 flagellar biosynthesi 98.6 2.8E-06 6E-11 87.1 17.7 39 49-89 206-244 (407)
98 PRK05703 flhF flagellar biosyn 98.5 2.2E-06 4.7E-11 90.0 16.2 39 49-89 221-261 (424)
99 COG0541 Ffh Signal recognition 98.5 3.6E-06 7.8E-11 86.7 17.0 41 47-89 98-138 (451)
100 PRK14974 cell division protein 98.5 5.4E-06 1.2E-10 84.3 16.9 40 48-89 139-178 (336)
101 COG0552 FtsY Signal recognitio 98.5 1.7E-06 3.7E-11 86.5 12.9 40 47-88 137-176 (340)
102 PRK12723 flagellar biosynthesi 98.5 2.8E-06 6.1E-11 87.9 14.7 40 48-89 173-216 (388)
103 PRK12724 flagellar biosynthesi 98.5 4.9E-06 1.1E-10 86.4 16.4 39 49-89 223-262 (432)
104 TIGR03499 FlhF flagellar biosy 98.4 1.9E-06 4.1E-11 85.7 10.9 40 48-89 193-234 (282)
105 PRK12727 flagellar biosynthesi 98.3 2.7E-05 5.9E-10 83.0 18.1 39 49-89 350-390 (559)
106 COG4963 CpaE Flp pilus assembl 98.3 1.1E-05 2.3E-10 82.0 13.6 64 278-344 241-308 (366)
107 cd06480 ACD_HspB8_like Alpha-c 98.3 2.2E-06 4.8E-11 70.6 6.7 62 386-449 15-90 (91)
108 TIGR00750 lao LAO/AO transport 98.3 4.4E-06 9.5E-11 83.8 10.0 41 48-90 33-73 (300)
109 PRK06731 flhF flagellar biosyn 98.2 4.8E-05 1E-09 75.2 15.8 39 49-89 75-113 (270)
110 PRK12374 putative dithiobiotin 98.2 5.2E-05 1.1E-09 73.1 15.2 67 278-345 136-205 (231)
111 cd03109 DTBS Dethiobiotin synt 98.1 5.9E-05 1.3E-09 66.6 13.3 58 279-338 70-130 (134)
112 cd00298 ACD_sHsps_p23-like Thi 98.1 9.4E-06 2E-10 63.1 7.0 62 386-449 6-79 (80)
113 KOG0780 Signal recognition par 98.0 5.2E-05 1.1E-09 76.9 11.2 39 48-88 100-138 (483)
114 PRK14723 flhF flagellar biosyn 98.0 0.00015 3.1E-09 80.7 15.7 39 49-89 185-225 (767)
115 PF10609 ParA: ParA/MinD ATPas 97.9 2.2E-05 4.8E-10 63.1 6.1 41 278-319 26-66 (81)
116 COG0132 BioD Dethiobiotin synt 97.9 0.00029 6.4E-09 67.5 14.8 38 278-316 137-174 (223)
117 PRK01077 cobyrinic acid a,c-di 97.9 0.00048 1E-08 73.0 17.8 36 48-83 3-38 (451)
118 COG1419 FlhF Flagellar GTP-bin 97.8 0.00018 3.8E-09 74.2 12.4 39 49-89 203-243 (407)
119 cd06469 p23_DYX1C1_like p23_li 97.8 9.5E-05 2.1E-09 58.6 7.5 62 386-449 6-67 (78)
120 PRK09435 membrane ATPase/prote 97.7 0.00023 5E-09 72.3 9.8 40 49-90 56-95 (332)
121 cd01120 RecA-like_NTPases RecA 97.6 0.00051 1.1E-08 60.7 10.5 39 51-91 1-39 (165)
122 PRK14722 flhF flagellar biosyn 97.6 0.00039 8.4E-09 71.7 10.4 39 49-89 137-177 (374)
123 PF13500 AAA_26: AAA domain; P 97.6 0.0025 5.3E-08 59.7 14.9 63 278-344 130-193 (199)
124 PLN02974 adenosylmethionine-8- 97.6 0.0034 7.3E-08 71.0 18.1 66 278-347 215-281 (817)
125 COG1703 ArgK Putative periplas 97.6 0.00022 4.7E-09 70.6 7.6 40 49-90 51-90 (323)
126 PRK06995 flhF flagellar biosyn 97.5 0.00065 1.4E-08 72.3 10.8 39 49-89 256-296 (484)
127 TIGR00313 cobQ cobyric acid sy 97.4 0.0034 7.4E-08 67.0 15.5 32 52-83 1-33 (475)
128 PRK05632 phosphate acetyltrans 97.4 0.0068 1.5E-07 67.6 18.0 36 48-83 1-37 (684)
129 cd01122 GP4d_helicase GP4d_hel 97.3 0.0018 4E-08 63.4 11.3 39 49-89 30-69 (271)
130 PF05455 GvpH: GvpH; InterPro 97.3 0.00091 2E-08 61.3 7.9 61 387-448 103-165 (177)
131 PRK14493 putative bifunctional 97.3 0.00031 6.8E-09 69.6 4.9 38 49-89 1-38 (274)
132 COG0529 CysC Adenylylsulfate k 97.3 0.0031 6.7E-08 58.1 10.8 39 49-89 23-61 (197)
133 KOG0710 Molecular chaperone (s 97.3 0.00034 7.3E-09 66.0 4.8 70 379-449 85-178 (196)
134 cd01394 radB RadB. The archaea 97.2 0.0013 2.7E-08 62.5 8.5 42 47-90 17-58 (218)
135 cd00984 DnaB_C DnaB helicase C 97.2 0.0044 9.6E-08 59.5 11.9 43 47-89 11-54 (242)
136 PRK06067 flagellar accessory p 97.2 0.0057 1.2E-07 58.8 12.4 44 44-89 20-63 (234)
137 PHA02542 41 41 helicase; Provi 97.1 0.0036 7.7E-08 66.8 11.7 42 47-90 188-229 (473)
138 KOG1532 GTPase XAB1, interacts 97.1 0.0033 7.1E-08 61.6 9.8 112 47-197 17-128 (366)
139 KOG1533 Predicted GTPase [Gene 97.1 0.0019 4.2E-08 61.8 7.9 36 53-90 6-41 (290)
140 cd03113 CTGs CTP synthetase (C 97.1 0.022 4.8E-07 55.2 15.0 38 51-90 2-41 (255)
141 PRK00889 adenylylsulfate kinas 97.0 0.0012 2.7E-08 60.4 6.0 40 48-89 3-42 (175)
142 PF03029 ATP_bind_1: Conserved 97.0 0.00048 1E-08 66.9 3.2 35 54-90 1-35 (238)
143 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0054 1.2E-07 60.2 10.6 41 46-88 33-73 (259)
144 PF01583 APS_kinase: Adenylyls 97.0 0.00072 1.6E-08 61.4 3.9 38 49-88 2-39 (156)
145 PRK07952 DNA replication prote 97.0 0.00095 2.1E-08 65.0 4.8 34 50-83 100-133 (244)
146 TIGR02012 tigrfam_recA protein 97.0 0.0053 1.2E-07 62.1 10.3 45 44-90 50-94 (321)
147 cd01124 KaiC KaiC is a circadi 96.9 0.0013 2.9E-08 60.3 5.4 38 51-90 1-38 (187)
148 KOG0781 Signal recognition par 96.9 0.0041 8.8E-08 65.0 9.3 39 49-89 378-416 (587)
149 COG1341 Predicted GTPase or GT 96.9 0.0064 1.4E-07 62.6 10.6 43 50-94 74-116 (398)
150 cd00983 recA RecA is a bacter 96.9 0.0062 1.3E-07 61.7 10.4 44 45-90 51-94 (325)
151 PRK09361 radB DNA repair and r 96.8 0.0044 9.5E-08 59.1 8.4 40 47-88 21-60 (225)
152 PF06745 KaiC: KaiC; InterPro 96.8 0.004 8.7E-08 59.4 8.0 41 47-89 17-58 (226)
153 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0016 3.5E-08 59.3 4.9 33 50-83 4-36 (159)
154 PRK03846 adenylylsulfate kinas 96.8 0.0021 4.5E-08 60.3 5.7 41 47-89 22-62 (198)
155 TIGR01618 phage_P_loop phage n 96.8 0.0031 6.8E-08 60.5 6.9 39 49-96 12-50 (220)
156 cd00477 FTHFS Formyltetrahydro 96.8 0.002 4.3E-08 68.1 5.5 52 48-101 37-92 (524)
157 PRK05973 replicative DNA helic 96.7 0.00098 2.1E-08 64.6 3.0 74 12-85 24-100 (237)
158 PRK13505 formate--tetrahydrofo 96.7 0.0027 5.8E-08 67.9 6.3 51 48-100 54-108 (557)
159 PRK06696 uridine kinase; Valid 96.7 0.0028 6.2E-08 60.6 6.0 39 48-88 21-59 (223)
160 COG1484 DnaC DNA replication p 96.7 0.002 4.3E-08 63.2 5.0 35 49-83 105-139 (254)
161 cd06463 p23_like Proteins cont 96.7 0.0086 1.9E-07 47.2 7.8 62 386-449 6-72 (84)
162 PRK07667 uridine kinase; Provi 96.7 0.0028 6.1E-08 59.3 5.5 39 49-89 17-55 (193)
163 TIGR03574 selen_PSTK L-seryl-t 96.7 0.002 4.2E-08 62.7 4.5 37 51-89 1-37 (249)
164 PRK05595 replicative DNA helic 96.7 0.011 2.3E-07 62.7 10.3 40 48-89 200-240 (444)
165 PRK06762 hypothetical protein; 96.6 0.0024 5.1E-08 57.9 4.7 37 48-89 1-37 (166)
166 PRK14721 flhF flagellar biosyn 96.6 0.056 1.2E-06 56.8 15.2 40 48-89 190-231 (420)
167 PF13245 AAA_19: Part of AAA d 96.6 0.0045 9.9E-08 49.2 5.4 40 49-90 10-53 (76)
168 PF03308 ArgK: ArgK protein; 96.6 0.0025 5.3E-08 62.3 4.6 40 49-90 29-68 (266)
169 PRK08006 replicative DNA helic 96.6 0.015 3.2E-07 62.1 10.8 41 48-90 223-264 (471)
170 PRK08760 replicative DNA helic 96.5 0.013 2.9E-07 62.5 10.2 42 47-90 227-269 (476)
171 TIGR02237 recomb_radB DNA repa 96.5 0.0049 1.1E-07 57.9 6.2 42 45-88 8-49 (209)
172 PF03796 DnaB_C: DnaB-like hel 96.5 0.014 3E-07 57.0 9.1 39 49-89 19-58 (259)
173 cd02028 UMPK_like Uridine mono 96.4 0.0035 7.7E-08 58.0 4.4 36 51-88 1-36 (179)
174 cd02027 APSK Adenosine 5'-phos 96.4 0.0038 8.1E-08 56.0 4.5 38 51-90 1-38 (149)
175 TIGR00708 cobA cob(I)alamin ad 96.4 0.0053 1.2E-07 56.7 5.5 34 49-83 6-39 (173)
176 PRK06526 transposase; Provisio 96.4 0.0023 5E-08 62.7 3.3 35 49-83 98-132 (254)
177 PF13207 AAA_17: AAA domain; P 96.4 0.0037 7.9E-08 53.2 4.2 30 51-83 1-30 (121)
178 TIGR03600 phage_DnaB phage rep 96.4 0.02 4.3E-07 60.1 10.4 40 48-89 193-233 (421)
179 TIGR00176 mobB molybdopterin-g 96.4 0.0046 1E-07 56.0 4.8 33 51-83 1-33 (155)
180 PRK14494 putative molybdopteri 96.4 0.0053 1.1E-07 59.3 5.4 35 49-83 1-35 (229)
181 PRK09165 replicative DNA helic 96.3 0.023 5E-07 61.0 10.4 41 47-89 215-270 (497)
182 COG4088 Predicted nucleotide k 96.3 0.0036 7.7E-08 59.1 3.6 39 49-89 1-39 (261)
183 PRK07004 replicative DNA helic 96.3 0.024 5.2E-07 60.4 10.3 41 48-90 212-253 (460)
184 PF01695 IstB_IS21: IstB-like 96.3 0.0054 1.2E-07 56.8 4.7 35 49-83 47-81 (178)
185 TIGR00665 DnaB replicative DNA 96.2 0.028 6.1E-07 59.1 10.5 41 47-89 193-234 (434)
186 PRK08840 replicative DNA helic 96.2 0.029 6.2E-07 59.8 10.5 42 47-90 215-257 (464)
187 KOG3591 Alpha crystallins [Pos 96.2 0.012 2.5E-07 54.4 6.5 69 379-449 65-147 (173)
188 KOG1534 Putative transcription 96.2 0.015 3.2E-07 55.1 7.1 38 51-90 5-42 (273)
189 PRK08506 replicative DNA helic 96.2 0.03 6.4E-07 59.8 10.4 40 48-89 191-230 (472)
190 smart00382 AAA ATPases associa 96.2 0.0046 1E-07 52.2 3.5 39 49-89 2-40 (148)
191 PRK04296 thymidine kinase; Pro 96.2 0.0082 1.8E-07 56.1 5.5 36 48-83 1-36 (190)
192 PF03205 MobB: Molybdopterin g 96.2 0.0076 1.6E-07 53.7 4.8 37 51-89 2-39 (140)
193 PHA00729 NTP-binding motif con 96.2 0.005 1.1E-07 59.2 3.9 26 49-74 17-42 (226)
194 cd01393 recA_like RecA is a b 96.1 0.067 1.5E-06 50.7 11.5 40 47-88 17-62 (226)
195 PF06418 CTP_synth_N: CTP synt 96.1 0.21 4.5E-06 49.0 14.5 40 49-90 1-42 (276)
196 PRK05748 replicative DNA helic 96.0 0.037 7.9E-07 58.7 10.2 41 47-89 201-242 (448)
197 PRK06321 replicative DNA helic 96.0 0.043 9.3E-07 58.6 10.6 42 47-90 224-266 (472)
198 PRK05636 replicative DNA helic 96.0 0.035 7.6E-07 59.8 10.0 42 47-90 263-305 (505)
199 PRK06904 replicative DNA helic 96.0 0.04 8.8E-07 58.8 10.4 42 47-90 219-261 (472)
200 PRK12377 putative replication 96.0 0.0079 1.7E-07 58.8 4.6 34 50-83 102-135 (248)
201 TIGR00455 apsK adenylylsulfate 96.0 0.013 2.8E-07 54.1 5.8 41 47-89 16-56 (184)
202 cd03116 MobB Molybdenum is an 96.0 0.011 2.4E-07 53.8 5.3 35 49-83 1-35 (159)
203 PRK05541 adenylylsulfate kinas 96.0 0.011 2.3E-07 54.2 5.1 39 48-88 6-44 (176)
204 PF13481 AAA_25: AAA domain; P 96.0 0.0098 2.1E-07 54.9 4.9 40 49-90 32-81 (193)
205 COG1110 Reverse gyrase [DNA re 95.9 0.15 3.2E-06 58.1 14.5 32 52-83 100-131 (1187)
206 COG0467 RAD55 RecA-superfamily 95.9 0.015 3.2E-07 56.9 6.0 46 44-89 18-63 (260)
207 PRK09183 transposase/IS protei 95.8 0.011 2.4E-07 58.1 4.8 34 50-83 103-136 (259)
208 PRK08533 flagellar accessory p 95.8 0.02 4.3E-07 55.3 6.2 42 47-90 22-63 (230)
209 PRK10751 molybdopterin-guanine 95.8 0.018 4E-07 53.2 5.7 39 47-85 4-42 (173)
210 PRK08939 primosomal protein Dn 95.7 0.013 2.8E-07 59.0 5.0 35 49-83 156-190 (306)
211 PRK13506 formate--tetrahydrofo 95.7 0.018 3.9E-07 61.6 6.1 51 49-101 54-108 (578)
212 COG1763 MobB Molybdopterin-gua 95.7 0.014 3.1E-07 53.2 4.7 37 48-84 1-37 (161)
213 PRK05480 uridine/cytidine kina 95.7 0.018 3.8E-07 54.3 5.5 38 48-89 5-42 (209)
214 KOG0635 Adenosine 5'-phosphosu 95.7 0.016 3.6E-07 52.1 4.8 39 49-89 31-69 (207)
215 PRK09354 recA recombinase A; P 95.6 0.13 2.8E-06 52.7 11.8 44 45-90 56-99 (349)
216 PF05729 NACHT: NACHT domain 95.6 0.013 2.8E-07 52.0 3.9 28 50-77 1-28 (166)
217 cd02019 NK Nucleoside/nucleoti 95.5 0.02 4.3E-07 44.4 4.3 31 51-83 1-31 (69)
218 COG4240 Predicted kinase [Gene 95.5 0.019 4.1E-07 55.1 4.8 38 49-88 50-88 (300)
219 PRK05439 pantothenate kinase; 95.5 0.026 5.7E-07 56.9 6.0 39 48-88 85-125 (311)
220 PRK06835 DNA replication prote 95.5 0.014 3E-07 59.4 4.0 34 50-83 184-217 (329)
221 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.017 3.7E-07 54.7 4.4 38 49-88 38-75 (226)
222 PF13479 AAA_24: AAA domain 95.4 0.05 1.1E-06 51.7 7.6 31 50-90 4-34 (213)
223 PRK08903 DnaA regulatory inact 95.4 0.022 4.8E-07 54.3 5.2 39 49-89 42-80 (227)
224 TIGR03575 selen_PSTK_euk L-ser 95.4 0.017 3.7E-07 59.0 4.6 37 51-89 1-38 (340)
225 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.037 8E-07 52.8 6.6 41 47-89 18-58 (229)
226 cd01672 TMPK Thymidine monopho 95.4 0.023 4.9E-07 52.3 5.0 34 50-83 1-34 (200)
227 PRK08233 hypothetical protein; 95.4 0.015 3.3E-07 53.0 3.8 36 49-88 3-38 (182)
228 PRK14495 putative molybdopteri 95.4 0.02 4.4E-07 60.0 5.1 37 49-85 1-37 (452)
229 PRK08727 hypothetical protein; 95.4 0.017 3.7E-07 55.7 4.3 34 50-83 42-75 (233)
230 PRK08181 transposase; Validate 95.4 0.018 3.9E-07 56.9 4.5 34 50-83 107-140 (269)
231 PRK09519 recA DNA recombinatio 95.4 0.088 1.9E-06 59.2 10.2 44 45-90 56-99 (790)
232 PF00485 PRK: Phosphoribulokin 95.4 0.015 3.2E-07 54.3 3.6 33 51-83 1-37 (194)
233 cd02025 PanK Pantothenate kina 95.3 0.021 4.5E-07 54.7 4.6 36 51-88 1-38 (220)
234 PF13086 AAA_11: AAA domain; P 95.3 0.018 4E-07 53.9 4.1 33 51-83 19-59 (236)
235 cd02029 PRK_like Phosphoribulo 95.3 0.023 4.9E-07 56.1 4.8 37 51-89 1-37 (277)
236 cd00009 AAA The AAA+ (ATPases 95.3 0.027 5.8E-07 48.1 4.8 35 49-83 19-53 (151)
237 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.045 9.7E-07 52.1 6.7 41 47-89 14-54 (224)
238 PRK15453 phosphoribulokinase; 95.3 0.029 6.4E-07 55.7 5.5 39 48-88 4-42 (290)
239 COG1066 Sms Predicted ATP-depe 95.2 0.055 1.2E-06 56.1 7.5 90 47-155 91-190 (456)
240 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.042 9.1E-07 53.1 6.4 44 46-89 18-61 (237)
241 PF08190 PIH1: pre-RNA process 95.2 0.067 1.4E-06 54.0 8.1 61 387-449 262-327 (328)
242 COG1618 Predicted nucleotide k 95.2 0.029 6.3E-07 51.1 4.8 35 49-83 5-39 (179)
243 PF08433 KTI12: Chromatin asso 95.1 0.025 5.5E-07 56.0 4.6 35 49-83 1-35 (270)
244 TIGR00041 DTMP_kinase thymidyl 95.1 0.036 7.8E-07 51.3 5.4 35 49-83 3-37 (195)
245 PRK07773 replicative DNA helic 95.1 0.11 2.3E-06 59.9 10.1 42 47-90 215-257 (886)
246 PRK06893 DNA replication initi 95.1 0.028 6.2E-07 54.0 4.7 35 49-83 39-73 (229)
247 cd02023 UMPK Uridine monophosp 95.1 0.025 5.4E-07 52.8 4.2 35 51-89 1-35 (198)
248 COG3598 RepA RecA-family ATPas 95.1 0.12 2.7E-06 52.0 9.0 26 50-75 90-115 (402)
249 TIGR02655 circ_KaiC circadian 95.0 0.044 9.5E-07 58.7 6.2 47 45-93 259-305 (484)
250 PF07728 AAA_5: AAA domain (dy 94.9 0.053 1.2E-06 47.4 5.7 43 52-97 2-44 (139)
251 PRK00131 aroK shikimate kinase 94.9 0.026 5.6E-07 50.9 3.7 35 48-89 3-37 (175)
252 PF13604 AAA_30: AAA domain; P 94.9 0.04 8.6E-07 51.8 5.1 35 49-83 18-52 (196)
253 PRK05642 DNA replication initi 94.9 0.029 6.2E-07 54.2 4.1 35 49-83 45-79 (234)
254 PRK00784 cobyric acid synthase 94.8 0.03 6.5E-07 60.1 4.5 36 48-83 1-37 (488)
255 PF13238 AAA_18: AAA domain; P 94.8 0.027 5.8E-07 47.9 3.3 22 52-73 1-22 (129)
256 PRK08084 DNA replication initi 94.8 0.036 7.8E-07 53.6 4.5 34 50-83 46-79 (235)
257 KOG1805 DNA replication helica 94.8 0.092 2E-06 59.3 8.1 38 51-90 687-724 (1100)
258 PRK11823 DNA repair protein Ra 94.8 0.049 1.1E-06 57.8 5.8 45 44-90 75-119 (446)
259 PRK06921 hypothetical protein; 94.7 0.04 8.6E-07 54.4 4.8 35 49-83 117-152 (266)
260 PRK08116 hypothetical protein; 94.7 0.04 8.8E-07 54.4 4.8 34 50-83 115-148 (268)
261 PRK06851 hypothetical protein; 94.7 0.063 1.4E-06 55.4 6.3 43 47-89 212-254 (367)
262 cd01121 Sms Sms (bacterial rad 94.7 0.066 1.4E-06 55.5 6.5 41 47-89 80-120 (372)
263 PRK12339 2-phosphoglycerate ki 94.6 0.039 8.5E-07 52.0 4.2 35 49-89 3-37 (197)
264 cd01123 Rad51_DMC1_radA Rad51_ 94.6 0.11 2.4E-06 49.6 7.3 43 45-89 15-63 (235)
265 PRK04328 hypothetical protein; 94.6 0.071 1.5E-06 52.0 6.0 44 46-89 20-63 (249)
266 TIGR00416 sms DNA repair prote 94.5 0.058 1.2E-06 57.4 5.7 44 45-90 90-133 (454)
267 PRK05986 cob(I)alamin adenolsy 94.5 0.06 1.3E-06 50.5 5.2 34 49-83 23-56 (191)
268 PRK06761 hypothetical protein; 94.5 0.038 8.3E-07 55.0 4.0 36 48-83 2-37 (282)
269 PRK09270 nucleoside triphospha 94.5 0.067 1.4E-06 51.3 5.6 40 48-89 32-72 (229)
270 PRK06217 hypothetical protein; 94.5 0.046 1E-06 50.5 4.3 32 50-88 2-33 (183)
271 PF01268 FTHFS: Formate--tetra 94.3 0.063 1.4E-06 57.6 5.4 50 48-99 53-106 (557)
272 TIGR02238 recomb_DMC1 meiotic 94.3 0.18 3.9E-06 51.0 8.5 44 44-89 91-140 (313)
273 PF00154 RecA: recA bacterial 94.3 0.21 4.5E-06 50.7 8.9 43 46-90 50-92 (322)
274 TIGR00235 udk uridine kinase. 94.3 0.06 1.3E-06 50.8 4.8 38 48-89 5-42 (207)
275 PLN03187 meiotic recombination 94.3 0.25 5.4E-06 50.6 9.6 44 44-89 121-170 (344)
276 PHA02530 pseT polynucleotide k 94.3 0.04 8.6E-07 54.8 3.7 36 48-89 1-36 (300)
277 cd01125 repA Hexameric Replica 94.2 0.061 1.3E-06 51.9 4.7 33 51-83 3-47 (239)
278 cd02021 GntK Gluconate kinase 94.2 0.045 9.7E-07 48.5 3.4 32 51-89 1-32 (150)
279 PRK05506 bifunctional sulfate 94.2 0.066 1.4E-06 59.3 5.5 40 48-89 459-498 (632)
280 PRK08118 topology modulation p 94.2 0.046 1E-06 50.0 3.6 22 52-73 4-25 (167)
281 PRK10536 hypothetical protein; 94.1 0.049 1.1E-06 53.4 3.8 49 49-100 74-125 (262)
282 PF12846 AAA_10: AAA-like doma 94.1 0.078 1.7E-06 51.8 5.3 37 52-90 4-40 (304)
283 PRK06547 hypothetical protein; 94.1 0.065 1.4E-06 49.4 4.4 25 48-72 14-38 (172)
284 PRK07414 cob(I)yrinic acid a,c 94.0 0.084 1.8E-06 49.0 5.0 34 49-83 22-55 (178)
285 PTZ00035 Rad51 protein; Provis 94.0 0.27 5.9E-06 50.3 9.1 69 45-116 114-193 (337)
286 PF03266 NTPase_1: NTPase; In 94.0 0.071 1.5E-06 49.0 4.4 30 52-81 2-31 (168)
287 PRK04301 radA DNA repair and r 94.0 0.25 5.3E-06 49.9 8.8 42 46-89 99-146 (317)
288 TIGR00554 panK_bact pantothena 94.0 0.1 2.3E-06 52.1 5.9 40 48-89 61-102 (290)
289 PRK14489 putative bifunctional 93.9 0.083 1.8E-06 54.5 5.3 38 48-85 204-241 (366)
290 PRK00652 lpxK tetraacyldisacch 93.9 0.08 1.7E-06 53.8 5.1 35 49-83 49-85 (325)
291 PLN02348 phosphoribulokinase 93.9 0.097 2.1E-06 54.3 5.6 29 48-76 48-76 (395)
292 PRK05537 bifunctional sulfate 93.9 0.093 2E-06 57.4 5.8 45 43-89 386-431 (568)
293 COG1102 Cmk Cytidylate kinase 93.9 0.052 1.1E-06 49.5 3.2 28 51-81 2-29 (179)
294 PF13671 AAA_33: AAA domain; P 93.9 0.033 7.1E-07 48.6 1.9 32 51-89 1-32 (143)
295 PLN02796 D-glycerate 3-kinase 93.8 0.088 1.9E-06 53.8 5.0 38 47-84 98-135 (347)
296 PF13401 AAA_22: AAA domain; P 93.8 0.077 1.7E-06 45.4 4.0 36 48-83 3-43 (131)
297 cd06466 p23_CS_SGT1_like p23_l 93.8 0.24 5.3E-06 39.3 6.7 61 387-449 8-73 (84)
298 PRK04040 adenylate kinase; Pro 93.7 0.068 1.5E-06 49.9 3.9 32 48-80 1-32 (188)
299 PLN02924 thymidylate kinase 93.7 0.15 3.3E-06 48.9 6.3 37 47-83 14-50 (220)
300 PRK12338 hypothetical protein; 93.7 0.076 1.7E-06 53.7 4.4 35 49-89 4-38 (319)
301 PRK00698 tmk thymidylate kinas 93.6 0.12 2.7E-06 48.0 5.5 35 49-83 3-37 (205)
302 COG2109 BtuR ATP:corrinoid ade 93.6 0.095 2.1E-06 48.9 4.5 33 50-83 30-62 (198)
303 PF02572 CobA_CobO_BtuR: ATP:c 93.6 0.097 2.1E-06 48.3 4.6 34 49-83 4-37 (172)
304 PRK13946 shikimate kinase; Pro 93.6 0.088 1.9E-06 48.7 4.4 36 49-91 10-45 (184)
305 TIGR02640 gas_vesic_GvpN gas v 93.6 0.13 2.7E-06 50.6 5.7 44 50-98 22-67 (262)
306 PRK04220 2-phosphoglycerate ki 93.6 0.11 2.3E-06 52.2 5.2 35 49-89 92-126 (301)
307 PRK13947 shikimate kinase; Pro 93.6 0.092 2E-06 47.5 4.4 39 51-96 3-41 (171)
308 PRK13507 formate--tetrahydrofo 93.6 0.077 1.7E-06 56.8 4.3 50 48-99 62-115 (587)
309 TIGR00376 DNA helicase, putati 93.5 0.098 2.1E-06 58.0 5.3 34 50-83 174-207 (637)
310 PF02562 PhoH: PhoH-like prote 93.4 0.096 2.1E-06 49.8 4.3 35 49-83 19-54 (205)
311 PRK06749 replicative DNA helic 93.4 0.11 2.4E-06 54.8 5.2 41 47-89 184-224 (428)
312 PF00931 NB-ARC: NB-ARC domain 93.4 0.077 1.7E-06 52.0 3.8 29 47-75 17-45 (287)
313 PF13173 AAA_14: AAA domain 93.4 0.11 2.4E-06 45.0 4.3 36 50-88 3-38 (128)
314 PRK07933 thymidylate kinase; V 93.3 0.13 2.7E-06 49.1 5.0 33 51-83 2-34 (213)
315 COG2874 FlaH Predicted ATPases 93.3 0.64 1.4E-05 44.4 9.5 41 47-89 26-66 (235)
316 PF00004 AAA: ATPase family as 93.3 0.11 2.3E-06 44.3 4.1 29 52-83 1-29 (132)
317 cd02024 NRK1 Nicotinamide ribo 93.3 0.085 1.8E-06 49.4 3.7 32 51-88 1-32 (187)
318 cd00227 CPT Chloramphenicol (C 93.3 0.086 1.9E-06 48.2 3.7 25 49-73 2-26 (175)
319 TIGR00379 cobB cobyrinic acid 93.2 0.11 2.4E-06 55.1 4.9 32 52-83 2-34 (449)
320 cd02020 CMPK Cytidine monophos 93.2 0.076 1.6E-06 46.4 3.1 23 51-73 1-23 (147)
321 PF09848 DUF2075: Uncharacteri 93.2 0.12 2.7E-06 52.9 5.1 41 49-91 1-43 (352)
322 COG2403 Predicted GTPase [Gene 93.2 0.11 2.3E-06 53.1 4.5 27 59-85 137-163 (449)
323 COG1797 CobB Cobyrinic acid a, 93.2 0.093 2E-06 54.7 4.1 60 50-117 2-65 (451)
324 PLN03046 D-glycerate 3-kinase; 93.2 0.13 2.8E-06 53.9 5.1 39 47-85 210-248 (460)
325 TIGR02655 circ_KaiC circadian 93.1 0.16 3.6E-06 54.4 6.1 46 44-89 16-62 (484)
326 TIGR02880 cbbX_cfxQ probable R 93.1 0.096 2.1E-06 52.2 4.0 29 50-78 59-87 (284)
327 cd00046 DEXDc DEAD-like helica 93.1 0.14 3E-06 43.1 4.5 33 51-83 2-36 (144)
328 PF13191 AAA_16: AAA ATPase do 93.1 0.095 2.1E-06 47.5 3.6 35 49-83 24-58 (185)
329 PLN02759 Formate--tetrahydrofo 93.0 0.12 2.6E-06 55.9 4.8 50 48-99 68-122 (637)
330 PTZ00301 uridine kinase; Provi 93.0 0.2 4.2E-06 47.8 5.8 38 49-88 3-42 (210)
331 PRK09302 circadian clock prote 93.0 0.15 3.2E-06 55.0 5.5 44 46-89 28-72 (509)
332 TIGR01359 UMP_CMP_kin_fam UMP- 92.9 0.082 1.8E-06 48.4 2.9 23 51-73 1-23 (183)
333 TIGR01360 aden_kin_iso1 adenyl 92.8 0.12 2.5E-06 47.3 3.9 25 49-73 3-27 (188)
334 COG1936 Predicted nucleotide k 92.8 0.12 2.7E-06 47.5 3.8 29 51-83 2-30 (180)
335 COG0305 DnaB Replicative DNA h 92.7 1.1 2.4E-05 47.2 11.3 41 48-90 195-236 (435)
336 TIGR00337 PyrG CTP synthase. C 92.7 4.4 9.6E-05 43.8 15.9 40 49-90 1-42 (525)
337 PRK14491 putative bifunctional 92.6 0.19 4E-06 55.4 5.7 38 48-85 9-46 (597)
338 PRK09302 circadian clock prote 92.6 0.23 4.9E-06 53.6 6.2 42 46-89 270-311 (509)
339 PRK05380 pyrG CTP synthetase; 92.6 3.5 7.6E-05 44.6 15.0 41 48-90 1-43 (533)
340 PRK02496 adk adenylate kinase; 92.5 0.13 2.8E-06 47.4 3.7 25 48-73 1-25 (184)
341 TIGR01313 therm_gnt_kin carboh 92.5 0.11 2.4E-06 46.7 3.2 31 52-89 1-31 (163)
342 PRK06851 hypothetical protein; 92.3 0.29 6.3E-06 50.6 6.4 42 48-89 29-70 (367)
343 PRK13975 thymidylate kinase; P 92.3 0.15 3.2E-06 47.2 4.0 27 48-74 1-27 (196)
344 PRK01184 hypothetical protein; 92.3 0.16 3.5E-06 46.6 4.2 29 49-81 1-29 (184)
345 CHL00181 cbbX CbbX; Provisiona 92.3 0.14 3.1E-06 51.0 4.1 29 50-78 60-88 (287)
346 PRK03731 aroL shikimate kinase 92.3 0.14 3E-06 46.4 3.7 42 48-96 1-42 (171)
347 PRK13948 shikimate kinase; Pro 92.3 0.19 4.1E-06 46.8 4.5 43 48-97 9-51 (182)
348 cd02022 DPCK Dephospho-coenzym 92.3 0.15 3.2E-06 47.0 3.7 31 51-89 1-31 (179)
349 PRK14531 adenylate kinase; Pro 92.2 0.15 3.3E-06 47.1 3.8 26 48-73 1-26 (183)
350 PRK14527 adenylate kinase; Pro 92.2 0.15 3.2E-06 47.4 3.8 26 48-73 5-30 (191)
351 cd01131 PilT Pilus retraction 92.2 0.22 4.8E-06 46.7 5.0 33 51-83 3-36 (198)
352 PRK07261 topology modulation p 92.2 0.13 2.8E-06 47.2 3.3 22 52-73 3-24 (171)
353 PRK03839 putative kinase; Prov 92.1 0.15 3.2E-06 46.8 3.6 23 51-73 2-24 (180)
354 COG0237 CoaE Dephospho-CoA kin 92.1 0.19 4.1E-06 47.6 4.4 34 48-89 1-34 (201)
355 PF06414 Zeta_toxin: Zeta toxi 92.1 0.15 3.4E-06 47.7 3.8 39 47-89 13-51 (199)
356 TIGR02881 spore_V_K stage V sp 92.1 0.15 3.3E-06 49.8 3.9 28 50-77 43-70 (261)
357 PF00910 RNA_helicase: RNA hel 92.0 0.15 3.3E-06 42.9 3.3 25 52-76 1-25 (107)
358 PLN02200 adenylate kinase fami 92.0 0.2 4.3E-06 48.5 4.5 25 49-73 43-67 (234)
359 TIGR02236 recomb_radA DNA repa 92.0 0.24 5.1E-06 49.8 5.2 43 45-89 91-139 (310)
360 COG0468 RecA RecA/RadA recombi 91.9 0.48 1E-05 47.1 7.1 47 42-90 53-99 (279)
361 PRK13973 thymidylate kinase; P 91.9 0.28 6.1E-06 46.5 5.4 34 50-83 4-37 (213)
362 PTZ00386 formyl tetrahydrofola 91.9 0.16 3.4E-06 54.8 3.9 50 48-99 67-121 (625)
363 PRK00081 coaE dephospho-CoA ki 91.9 0.21 4.5E-06 46.8 4.3 34 48-89 1-34 (194)
364 COG2074 2-phosphoglycerate kin 91.8 0.16 3.4E-06 49.6 3.4 35 49-89 89-123 (299)
365 PRK10490 sensor protein KdpD; 91.7 7.8 0.00017 44.9 17.7 35 49-83 23-58 (895)
366 PRK13695 putative NTPase; Prov 91.7 0.27 5.9E-06 44.8 4.8 30 52-81 3-32 (174)
367 PRK14528 adenylate kinase; Pro 91.5 0.19 4.2E-06 46.7 3.7 24 50-73 2-25 (186)
368 TIGR00682 lpxK tetraacyldisacc 91.5 0.19 4.1E-06 50.8 3.9 27 57-83 38-64 (311)
369 TIGR02322 phosphon_PhnN phosph 91.5 0.18 3.8E-06 46.1 3.4 28 50-77 2-29 (179)
370 PF05970 PIF1: PIF1-like helic 91.5 0.22 4.7E-06 51.4 4.4 35 49-83 22-56 (364)
371 PRK00091 miaA tRNA delta(2)-is 91.5 0.2 4.4E-06 50.5 4.1 35 48-89 3-37 (307)
372 PRK13896 cobyrinic acid a,c-di 91.5 0.25 5.3E-06 52.2 4.8 35 49-83 2-36 (433)
373 KOG0744 AAA+-type ATPase [Post 91.4 0.15 3.3E-06 51.3 3.0 35 49-83 177-215 (423)
374 smart00763 AAA_PrkA PrkA AAA d 91.4 0.23 5.1E-06 51.0 4.4 28 48-75 77-104 (361)
375 COG2759 MIS1 Formyltetrahydrof 91.3 0.14 3E-06 53.5 2.7 49 49-99 52-104 (554)
376 cd03112 CobW_like The function 91.3 1.1 2.3E-05 40.5 8.3 31 51-83 2-32 (158)
377 PRK14730 coaE dephospho-CoA ki 91.3 0.27 5.9E-06 46.1 4.5 33 50-89 2-34 (195)
378 PF00437 T2SE: Type II/IV secr 91.3 0.24 5.2E-06 48.5 4.3 35 49-83 127-161 (270)
379 TIGR03263 guanyl_kin guanylate 91.2 0.18 3.9E-06 46.0 3.1 24 50-73 2-25 (180)
380 PF07724 AAA_2: AAA domain (Cd 91.1 0.29 6.2E-06 45.1 4.3 35 49-83 3-38 (171)
381 PF01935 DUF87: Domain of unkn 91.1 0.35 7.5E-06 46.1 5.1 38 50-89 24-62 (229)
382 PLN02327 CTP synthase 91.1 6.3 0.00014 42.9 14.9 40 49-90 1-42 (557)
383 PRK01906 tetraacyldisaccharide 91.1 0.22 4.7E-06 51.0 3.8 34 50-83 57-92 (338)
384 COG0125 Tmk Thymidylate kinase 91.0 0.42 9.1E-06 45.5 5.5 36 48-83 2-37 (208)
385 KOG3347 Predicted nucleotide k 91.0 0.2 4.2E-06 45.3 2.9 29 52-83 10-38 (176)
386 PRK12422 chromosomal replicati 91.0 0.24 5.1E-06 52.6 4.1 34 50-83 142-175 (445)
387 TIGR02239 recomb_RAD51 DNA rep 90.9 0.83 1.8E-05 46.3 7.8 42 46-89 93-140 (316)
388 PLN02748 tRNA dimethylallyltra 90.8 0.38 8.2E-06 51.3 5.4 40 43-89 16-55 (468)
389 TIGR02782 TrbB_P P-type conjug 90.8 0.32 7E-06 48.8 4.7 35 49-83 132-168 (299)
390 COG0504 PyrG CTP synthase (UTP 90.8 3 6.4E-05 44.4 11.8 39 49-89 1-41 (533)
391 PF05496 RuvB_N: Holliday junc 90.7 0.19 4.2E-06 48.3 2.8 26 49-74 50-75 (233)
392 PRK12337 2-phosphoglycerate ki 90.7 0.24 5.2E-06 52.5 3.8 36 48-89 254-289 (475)
393 COG1855 ATPase (PilT family) [ 90.6 0.28 6E-06 51.5 4.1 30 49-78 263-292 (604)
394 CHL00060 atpB ATP synthase CF1 90.6 11 0.00024 40.5 16.2 43 256-299 297-341 (494)
395 PRK13764 ATPase; Provisional 90.5 0.34 7.3E-06 53.2 4.9 35 49-83 257-291 (602)
396 COG1072 CoaA Panthothenate kin 90.5 0.51 1.1E-05 46.6 5.7 41 47-89 80-122 (283)
397 PF13555 AAA_29: P-loop contai 90.5 0.37 7.9E-06 36.9 3.7 25 50-74 24-48 (62)
398 PF02606 LpxK: Tetraacyldisacc 90.5 0.25 5.3E-06 50.3 3.6 35 49-83 35-71 (326)
399 PRK00625 shikimate kinase; Pro 90.4 0.3 6.5E-06 45.0 3.9 36 51-93 2-37 (173)
400 TIGR03015 pepcterm_ATPase puta 90.4 0.24 5.2E-06 48.1 3.4 27 49-75 43-69 (269)
401 COG0572 Udk Uridine kinase [Nu 90.4 0.33 7.1E-06 46.5 4.1 36 49-88 8-43 (218)
402 TIGR00362 DnaA chromosomal rep 90.4 0.27 5.8E-06 51.3 3.9 34 50-83 137-172 (405)
403 PRK14530 adenylate kinase; Pro 90.4 0.28 6.1E-06 46.4 3.7 24 50-73 4-27 (215)
404 KOG2004 Mitochondrial ATP-depe 90.2 0.19 4.1E-06 55.4 2.6 29 49-77 438-466 (906)
405 PRK14532 adenylate kinase; Pro 90.0 0.26 5.6E-06 45.5 3.0 22 52-73 3-24 (188)
406 PTZ00088 adenylate kinase 1; P 90.0 0.32 7E-06 47.0 3.8 24 49-73 7-30 (229)
407 PRK08356 hypothetical protein; 89.9 0.35 7.6E-06 45.1 3.8 28 49-80 5-32 (195)
408 PRK10078 ribose 1,5-bisphospho 89.8 0.3 6.5E-06 45.2 3.3 24 49-72 2-25 (186)
409 TIGR00073 hypB hydrogenase acc 89.7 0.62 1.4E-05 43.8 5.5 38 49-89 22-59 (207)
410 PLN03186 DNA repair protein RA 89.7 1.4 3.1E-05 45.1 8.5 43 45-89 119-167 (342)
411 PRK14738 gmk guanylate kinase; 89.7 0.38 8.2E-06 45.4 4.0 23 48-70 12-34 (206)
412 PLN03210 Resistant to P. syrin 89.7 0.45 9.7E-06 56.4 5.4 30 48-77 206-235 (1153)
413 cd01428 ADK Adenylate kinase ( 89.7 0.3 6.4E-06 44.9 3.2 22 52-73 2-23 (194)
414 cd00464 SK Shikimate kinase (S 89.6 0.34 7.3E-06 42.7 3.4 27 52-81 2-28 (154)
415 PF05707 Zot: Zonular occluden 89.6 0.31 6.8E-06 45.5 3.3 32 51-82 2-34 (193)
416 PRK00149 dnaA chromosomal repl 89.6 0.34 7.3E-06 51.4 3.9 35 49-83 148-184 (450)
417 PRK05057 aroK shikimate kinase 89.6 0.52 1.1E-05 43.2 4.7 41 49-96 4-44 (172)
418 PLN02422 dephospho-CoA kinase 89.6 0.42 9E-06 46.3 4.2 33 49-89 1-33 (232)
419 PF13521 AAA_28: AAA domain; P 89.5 0.37 7.9E-06 43.4 3.6 21 52-72 2-22 (163)
420 PRK14734 coaE dephospho-CoA ki 89.5 0.48 1E-05 44.6 4.5 33 49-89 1-33 (200)
421 TIGR02768 TraA_Ti Ti-type conj 89.5 0.51 1.1E-05 53.3 5.4 35 49-83 368-402 (744)
422 KOG1969 DNA replication checkp 89.5 0.56 1.2E-05 51.9 5.5 43 43-88 320-362 (877)
423 cd00544 CobU Adenosylcobinamid 89.5 0.46 9.9E-06 43.7 4.2 30 51-83 1-30 (169)
424 PRK04182 cytidylate kinase; Pr 89.4 0.33 7.2E-06 43.9 3.3 23 51-73 2-24 (180)
425 PLN03025 replication factor C 89.4 0.4 8.7E-06 48.4 4.1 32 52-83 37-68 (319)
426 PRK14490 putative bifunctional 89.4 0.49 1.1E-05 48.9 4.8 36 49-85 5-40 (369)
427 cd01129 PulE-GspE PulE/GspE Th 89.3 0.44 9.6E-06 46.9 4.3 35 49-83 80-114 (264)
428 PRK14737 gmk guanylate kinase; 89.0 0.42 9.2E-06 44.5 3.7 25 48-72 3-27 (186)
429 TIGR01650 PD_CobS cobaltochela 89.0 0.6 1.3E-05 47.5 5.0 46 50-98 65-110 (327)
430 PF08423 Rad51: Rad51; InterP 88.9 0.52 1.1E-05 46.2 4.4 79 47-128 36-125 (256)
431 TIGR01351 adk adenylate kinase 88.8 0.36 7.8E-06 45.5 3.2 22 52-73 2-23 (210)
432 PRK00300 gmk guanylate kinase; 88.8 0.4 8.7E-06 44.7 3.4 26 48-73 4-29 (205)
433 COG0194 Gmk Guanylate kinase [ 88.7 0.42 9E-06 44.6 3.4 31 48-81 3-33 (191)
434 smart00487 DEXDc DEAD-like hel 88.7 0.56 1.2E-05 41.9 4.2 34 50-83 25-60 (201)
435 PRK14088 dnaA chromosomal repl 88.6 0.43 9.4E-06 50.5 3.9 33 51-83 132-166 (440)
436 PRK12608 transcription termina 88.4 3.4 7.5E-05 42.8 10.1 31 49-80 134-164 (380)
437 TIGR02173 cyt_kin_arch cytidyl 88.3 0.45 9.8E-06 42.7 3.3 27 51-80 2-28 (171)
438 cd01918 HprK_C HprK/P, the bif 88.2 0.42 9.1E-06 43.1 3.0 26 50-79 15-40 (149)
439 COG0563 Adk Adenylate kinase a 88.1 0.47 1E-05 44.0 3.3 21 52-72 3-23 (178)
440 PRK00279 adk adenylate kinase; 88.1 0.46 1E-05 44.9 3.4 22 52-73 3-24 (215)
441 COG0703 AroK Shikimate kinase 88.1 0.36 7.8E-06 44.5 2.5 42 49-97 2-43 (172)
442 PRK06278 cobyrinic acid a,c-di 88.0 0.73 1.6E-05 49.3 5.1 63 278-342 351-418 (476)
443 cd01133 F1-ATPase_beta F1 ATP 88.0 3.7 8E-05 40.8 9.7 34 49-83 70-103 (274)
444 TIGR00017 cmk cytidylate kinas 87.9 0.58 1.3E-05 44.7 3.9 26 48-73 1-26 (217)
445 KOG2878 Predicted kinase [Gene 87.9 0.54 1.2E-05 44.5 3.5 43 44-88 26-71 (282)
446 TIGR01041 ATP_syn_B_arch ATP s 87.8 28 0.0006 37.3 16.7 45 256-300 273-320 (458)
447 PRK04196 V-type ATP synthase s 87.7 26 0.00055 37.5 16.5 44 256-299 275-321 (460)
448 PRK05416 glmZ(sRNA)-inactivati 87.7 0.7 1.5E-05 46.2 4.5 28 47-78 4-31 (288)
449 PF07726 AAA_3: ATPase family 87.7 0.34 7.4E-06 42.6 1.9 45 52-99 2-46 (131)
450 PRK07413 hypothetical protein; 87.7 1.1 2.5E-05 46.4 6.1 34 49-83 20-59 (382)
451 TIGR00152 dephospho-CoA kinase 87.6 0.57 1.2E-05 43.3 3.6 32 51-89 1-32 (188)
452 PRK05800 cobU adenosylcobinami 87.6 0.65 1.4E-05 42.7 3.9 31 50-83 2-32 (170)
453 PRK13949 shikimate kinase; Pro 87.5 0.55 1.2E-05 43.0 3.4 35 50-91 2-36 (169)
454 PLN02840 tRNA dimethylallyltra 87.4 0.79 1.7E-05 48.2 4.8 26 48-73 20-45 (421)
455 TIGR00635 ruvB Holliday juncti 87.3 0.57 1.2E-05 46.6 3.7 31 50-83 31-61 (305)
456 TIGR03172 probable selenium-de 87.3 0.84 1.8E-05 44.2 4.6 30 52-83 2-31 (232)
457 PRK00080 ruvB Holliday junctio 87.2 0.58 1.3E-05 47.4 3.7 32 49-83 51-82 (328)
458 PRK13976 thymidylate kinase; P 87.1 0.96 2.1E-05 43.0 4.8 33 51-83 2-36 (209)
459 COG2256 MGS1 ATPase related to 87.0 0.52 1.1E-05 48.9 3.2 22 52-73 51-72 (436)
460 COG1428 Deoxynucleoside kinase 87.0 0.6 1.3E-05 44.4 3.4 41 49-92 4-44 (216)
461 PRK12402 replication factor C 87.0 0.79 1.7E-05 46.0 4.5 33 51-83 38-72 (337)
462 TIGR03783 Bac_Flav_CT_G Bacter 87.0 1.2 2.7E-05 50.9 6.5 44 50-95 439-485 (829)
463 TIGR02524 dot_icm_DotB Dot/Icm 87.0 1.1 2.3E-05 46.3 5.5 36 48-83 133-171 (358)
464 PHA02544 44 clamp loader, smal 86.9 1 2.2E-05 45.1 5.1 32 49-83 43-74 (316)
465 PLN02165 adenylate isopentenyl 86.9 1.2 2.5E-05 45.5 5.6 25 49-73 43-67 (334)
466 PRK14963 DNA polymerase III su 86.6 0.76 1.6E-05 49.6 4.3 30 48-77 35-64 (504)
467 PF01745 IPT: Isopentenyl tran 86.6 1.1 2.4E-05 42.9 4.9 32 49-83 1-32 (233)
468 PF10662 PduV-EutP: Ethanolami 86.3 0.63 1.4E-05 41.7 3.0 22 49-70 1-22 (143)
469 PF13476 AAA_23: AAA domain; P 86.3 0.81 1.7E-05 41.8 3.8 27 49-75 19-45 (202)
470 smart00072 GuKc Guanylate kina 86.2 0.7 1.5E-05 42.6 3.4 25 49-73 2-26 (184)
471 PRK04195 replication factor C 86.2 0.85 1.8E-05 48.9 4.4 32 49-83 39-70 (482)
472 PRK14958 DNA polymerase III su 86.0 0.79 1.7E-05 49.5 4.1 27 49-75 38-64 (509)
473 PRK07413 hypothetical protein; 86.0 1.1 2.4E-05 46.4 5.0 35 48-83 200-240 (382)
474 PF06309 Torsin: Torsin; Inte 85.8 1.4 3E-05 38.6 4.8 35 46-80 50-84 (127)
475 cd00071 GMPK Guanosine monopho 85.8 0.63 1.4E-05 41.0 2.7 23 51-73 1-23 (137)
476 TIGR03346 chaperone_ClpB ATP-d 85.6 1.1 2.5E-05 51.4 5.3 35 49-83 595-629 (852)
477 cd04163 Era Era subfamily. Er 85.5 1.3 2.8E-05 38.4 4.6 29 49-83 3-31 (168)
478 TIGR00150 HI0065_YjeE ATPase, 85.5 0.89 1.9E-05 40.2 3.5 26 49-74 22-47 (133)
479 TIGR00390 hslU ATP-dependent p 85.5 0.84 1.8E-05 48.0 3.8 25 49-73 47-71 (441)
480 PRK00411 cdc6 cell division co 85.5 1.2 2.6E-05 45.9 5.1 37 50-88 56-94 (394)
481 PRK14733 coaE dephospho-CoA ki 85.3 1.1 2.4E-05 42.5 4.3 35 49-90 6-40 (204)
482 PRK10865 protein disaggregatio 85.2 0.91 2E-05 52.2 4.3 35 52-88 202-243 (857)
483 PRK14960 DNA polymerase III su 85.2 0.96 2.1E-05 50.2 4.2 27 49-75 37-63 (702)
484 PF01580 FtsK_SpoIIIE: FtsK/Sp 85.2 1.1 2.4E-05 41.8 4.3 35 52-88 41-79 (205)
485 PF02492 cobW: CobW/HypB/UreG, 85.0 1.3 2.9E-05 40.6 4.6 32 51-83 2-33 (178)
486 PRK14526 adenylate kinase; Pro 85.0 0.93 2E-05 43.2 3.6 24 49-73 1-24 (211)
487 PRK14961 DNA polymerase III su 85.0 1 2.3E-05 46.3 4.3 26 49-74 38-63 (363)
488 PRK13342 recombination factor 85.0 0.86 1.9E-05 47.8 3.7 30 51-83 38-67 (413)
489 TIGR01448 recD_rel helicase, p 85.0 1.4 3E-05 49.8 5.5 35 49-83 338-374 (720)
490 KOG0991 Replication factor C, 84.8 0.82 1.8E-05 44.4 3.1 33 51-83 50-82 (333)
491 PF00625 Guanylate_kin: Guanyl 84.7 0.84 1.8E-05 42.0 3.1 25 49-73 2-26 (183)
492 TIGR01420 pilT_fam pilus retra 84.7 1.2 2.7E-05 45.4 4.6 35 49-83 122-157 (343)
493 PRK14529 adenylate kinase; Pro 84.6 1 2.2E-05 43.4 3.7 25 49-74 1-25 (223)
494 PRK14962 DNA polymerase III su 84.6 1.1 2.3E-05 48.0 4.3 27 49-75 36-62 (472)
495 cd02026 PRK Phosphoribulokinas 84.6 0.8 1.7E-05 45.4 3.1 31 51-83 1-31 (273)
496 PRK14086 dnaA chromosomal repl 84.5 1 2.2E-05 49.6 4.0 34 50-83 315-350 (617)
497 PRK06645 DNA polymerase III su 84.5 1 2.2E-05 48.6 4.1 27 49-75 43-69 (507)
498 PRK14731 coaE dephospho-CoA ki 84.5 1.5 3.3E-05 41.4 4.8 31 50-88 6-36 (208)
499 COG1663 LpxK Tetraacyldisaccha 84.5 0.77 1.7E-05 46.6 2.9 30 57-88 57-86 (336)
500 PRK14964 DNA polymerase III su 84.4 1.1 2.3E-05 48.2 4.2 27 49-75 35-61 (491)
No 1
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=100.00 E-value=1.3e-56 Score=447.56 Aligned_cols=283 Identities=28% Similarity=0.385 Sum_probs=228.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMFLEP 124 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~~~ 124 (449)
||+++|+|||||||||+|+|+|+++|++|+||||+ |+|| +++|+||.+++++|++|. +||+++|+|+...++++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv--S~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~ 78 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLV--STDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEY 78 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE--ESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe--ecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHH
Confidence 69999999999999999999999999999999999 7777 499999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhh
Q 013114 125 LNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGV 204 (449)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~l 204 (449)
|.++.+.....+.. ...+.++..++..+||++|++++.++.++++ +++||+|||||||||||||||++
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~-----------~~~~D~IVvDt~ptg~tLrlL~l 146 (305)
T PF02374_consen 79 WEEVQKDLSSLLPL-IGLERILDEELSSLPGLDELAALLRLADLLE-----------SGEYDLIVVDTPPTGHTLRLLSL 146 (305)
T ss_dssp HHHHHHGCSTCHHC-HHHHHHHHHHTTSSTTHHHHHHHHHHHHHHH-----------HCSTSEEEEESSSSHHHHHHHHH
T ss_pred HHHHHhhhccchhh-hhhHHHHHHHHhcCCcHHHHHHHHHHHHHHH-----------hCCCCEEEECCCCcHHHHHHHhH
Confidence 99998876544421 1224566677888899999999988887765 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHH---HHHHHHHHhhcCCCceEEE
Q 013114 205 SSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMD---RMLERGSSALAEPHKFGCF 281 (449)
Q Consensus 205 P~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~---~~~~~~~~~L~dp~~t~v~ 281 (449)
|+.+.||+++++++++++ .++.+++.. +.. + +.+.+++++.+. +.+++++++|+||+.|+|+
T Consensus 147 P~~l~~~l~~l~~~~~~~--~~~~~~~~~------~~~-~------~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~ 211 (305)
T PF02374_consen 147 PERLRWWLDRLLKLRRKI--RSLARPLSG------LGL-G------AVPLDEILEELEEMRERLERLRELLRDPERTSFR 211 (305)
T ss_dssp HHHHHHHHHHHHHHHHCH--HHHHHHHCH------SHC-C------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHhh--cchhhhhhc------ccc-c------ccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999999865 333333211 000 0 011234555554 4578899999999999999
Q ss_pred EEecCCCcchHHHHHHHHHHHHHcCCcccEEEEec--------Cccc------cHHHHHHHHHhcCCCCeeeccCCCCCC
Q 013114 282 LVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTA--------SPHL------DEESAERVRKNFSPLPLSFLPHLPTDS 347 (449)
Q Consensus 282 LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~--------~~~~------q~~~l~~i~~~F~~lpi~~vP~~~~e~ 347 (449)
+|+||| ++++.||+|++++|+++|++|++||||+ ++++ |+.|++++++.|+++||+++|+++.||
T Consensus 212 lV~~pE-~l~i~Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~~~~ev 290 (305)
T PF02374_consen 212 LVTNPE-PLAIAETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPLLPEEV 290 (305)
T ss_dssp EEEESS-HHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--SS-S
T ss_pred EEecCC-cchHHHHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 999999 7999999999999999999999999993 1232 556999999999999999999999999
Q ss_pred ccchhhhhccccHHHHHHHh
Q 013114 348 SLDWNTIMLNPAGKEARDLL 367 (449)
Q Consensus 348 ~~~~~~~g~~~L~~la~~lf 367 (449)
+|++.|+.+++.+|
T Consensus 291 ------~G~~~L~~~~~~L~ 304 (305)
T PF02374_consen 291 ------RGLDALEALADHLY 304 (305)
T ss_dssp -------SHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHhc
Confidence 99999999999887
No 2
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-54 Score=432.84 Aligned_cols=294 Identities=26% Similarity=0.358 Sum_probs=249.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
++||++|+|||||||||+|||+|+++|+.|+||||| |+||+ |+|+|+.++++.|.+|.+||+++++|+...+++||
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv--StDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~ 78 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV--STDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYW 78 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE--EeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHH
Confidence 479999999999999999999999999999999999 88884 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
+++++.+..++...+ +..++.+++..+||++|++++.++.+++. +++||+|||||||||||||||++|
T Consensus 79 ~~v~~~~~~~~~~~~-l~~~~~~e~~~~PGidE~~~l~~i~e~~~-----------~~~yD~IV~DtaPTG~TLRlL~lP 146 (322)
T COG0003 79 DEVKDYLARLLRTRG-LGGIYADELATLPGIDEALALLKILEYYV-----------SGEYDVIVVDTAPTGHTLRLLSLP 146 (322)
T ss_pred HHHHHHHHhhccccc-cchhHHHHHhhCCCHHHHHHHHHHHHHHh-----------ccCCCEEEEcCCChHHHHHHhccH
Confidence 999998888774443 35788899999999999999998887754 578999999999999999999999
Q ss_pred HHHHHHHHHHHH-HhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHH---HHHHHHhhcCCCceEEE
Q 013114 206 SKARLYLKYLRN-VAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRM---LERGSSALAEPHKFGCF 281 (449)
Q Consensus 206 ~~l~~~l~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~---~~~~~~~L~dp~~t~v~ 281 (449)
+.+.||++++++ .+++. .... +.. .+..+. +.+.|+++++++++ +..+++.|.||..|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~--~~~~-~~~-------~~~~~~-----~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~ 211 (322)
T COG0003 147 EVLGWYLEKLFKPRRKRM--VKAL-KSL-------STAAGS-----PLPDDAVLEALEELKERIADVREVLTNPDGTSFR 211 (322)
T ss_pred HHHHHHHHhhhhhHHHHH--HHhh-hhc-------ccccCC-----cCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 999999999885 44332 1110 100 010011 13367788888766 55888999999999999
Q ss_pred EEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecC-------cc------ccHHHHHHHHHhcCCCCeeeccCCCCCCc
Q 013114 282 LVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTAS-------PH------LDEESAERVRKNFSPLPLSFLPHLPTDSS 348 (449)
Q Consensus 282 LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~-------~~------~q~~~l~~i~~~F~~lpi~~vP~~~~e~~ 348 (449)
+|++|| .+++.|+.|++.+|.+||+++++|++|+- ++ .|+.++.++++.|.++.+..+|++.+|+
T Consensus 212 lV~~pe-~l~l~e~~ra~~~l~~~~i~v~~vi~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~~ee~- 289 (322)
T COG0003 212 LVSIPE-KLSLYETKRAVERLSLYGIPVDAVIVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLLAEEP- 289 (322)
T ss_pred EEeccc-ccchHHHHHHHHHHHHcCCchheeeeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEeccccccc-
Confidence 999999 79999999999999999999999999932 12 2345899999999999999999999998
Q ss_pred cchhhhhccccHHHHHHHhcccccccccCC
Q 013114 349 LDWNTIMLNPAGKEARDLLSLQAKRSSSLM 378 (449)
Q Consensus 349 ~~~~~~g~~~L~~la~~lf~~~~dp~~~~~ 378 (449)
.|.+.|.++++.+++ ..+|..+.+
T Consensus 290 -----~g~~~l~~l~~~l~~-~~~~~~~~~ 313 (322)
T COG0003 290 -----VGLEALEKLGDLLYG-DESPAPVGP 313 (322)
T ss_pred -----ccHHHHHHHHHhccC-CCCcccccc
Confidence 888999999998775 556766655
No 3
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-44 Score=335.68 Aligned_cols=283 Identities=20% Similarity=0.274 Sum_probs=227.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhccCCCCeeec--CCcceeecCchhhhh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCKIGNSPVVCN--SNLSAVRIETTKMFL 122 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~ 122 (449)
...+.||++|||||||||+||.+|..+|.-+.+||+| |+||+ ++|.|+.+....|+++. +||+++|||+..++.
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiI--STDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~ 94 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLII--STDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMG 94 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEe--ecCcccchHHHHHHHhcCCCccccChhhheeeecCCchhhh
Confidence 3468999999999999999999999999999999999 99996 99999999999999886 799999999997665
Q ss_pred hhHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHh
Q 013114 123 EPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMI 202 (449)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL 202 (449)
+.-+.......+.. ..| .....+....+||+||.++...+-+++. +.+||+|||||||||||||||
T Consensus 95 ~~~~m~~~~~~n~~-~~g--~g~l~e~~~~~Pgideamsfae~~klvk-----------~~~F~~vVFDTAPTGHTLRlL 160 (323)
T KOG2825|consen 95 DMPEMFGNAANNEG-SDG--KGMLQELANAFPGIDEAMSFAEVMKLVK-----------GMNFDVVVFDTAPTGHTLRLL 160 (323)
T ss_pred hhHHHhhccccccc-ccc--hhHHHHHHhcCCChhHHHhHHHHHHHhh-----------ccccceEEeccCCCcceehhh
Confidence 43322222111100 011 2344555667899999999888877764 457999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHH---HHHHHHHhhcCCCceE
Q 013114 203 GVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDR---MLERGSSALAEPHKFG 279 (449)
Q Consensus 203 ~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~---~~~~~~~~L~dp~~t~ 279 (449)
.+|..+..-+.++.++..++ +|++.++ .+.++.. +...|.+.+.+++ .++++++.++||+.|+
T Consensus 161 ~fP~~lek~lgKl~~l~~k~------~pm~sq~-~sm~g~~-------~~~~~~l~~kle~~~~~i~~vn~qFkdpd~Tt 226 (323)
T KOG2825|consen 161 QFPTTLEKGLGKLLSLKNKI------GPMLSQM-GSMFGME-------DAGADDLAGKLEELLEVIEKVNEQFKDPDCTT 226 (323)
T ss_pred ccchHHHHHHHHHHHHHHHH------HHHHHHH-hhhhccc-------cCCHHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 99999999999999988774 4554322 2344321 1223445555554 4779999999999999
Q ss_pred EEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEec----C-----------ccccHHHHHHHHHhcCCCCeeeccCCC
Q 013114 280 CFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTA----S-----------PHLDEESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 280 v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~----~-----------~~~q~~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
|+.|+.|| -+++.||.|+...|..+|+.+.-+|||. + ...|.+|+..|++.+.+..+.++|+.+
T Consensus 227 FVcVcI~e-flslyEteRliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~ 305 (323)
T KOG2825|consen 227 FVCVCIAE-FLSLYETERLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLP 305 (323)
T ss_pred EEEEEHHH-HHhHHHHHHHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccch
Confidence 99999999 8999999999999999999999999992 1 124677999999999999999999999
Q ss_pred CCCccchhhhhccccHHHHHHH
Q 013114 345 TDSSLDWNTIMLNPAGKEARDL 366 (449)
Q Consensus 345 ~e~~~~~~~~g~~~L~~la~~l 366 (449)
.|+ +|.++|+.+.+.+
T Consensus 306 ~Ev------rG~~al~~fse~l 321 (323)
T KOG2825|consen 306 MEV------RGVEALNFFSEIL 321 (323)
T ss_pred hhh------cCHHHHHHHHHHh
Confidence 999 8989998876644
No 4
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=100.00 E-value=1.1e-41 Score=337.39 Aligned_cols=263 Identities=21% Similarity=0.299 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhhhhhHHHHHHHHHhhhhccc
Q 013114 65 SAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMFLEPLNWLKQADARLNMTQG 140 (449)
Q Consensus 65 vAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~~~~~~~~~~~~~~~~~~~ 140 (449)
+|+++|..+|++|+|||+| |+|| +++++||.+++++|+.+. +||+++++|+...++++|+++++.........+
T Consensus 1 ~a~a~a~~~a~~g~~vllv--~~Dp~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~ 78 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLV--STDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEEYRAKLVEQIKGNLPDGD 78 (284)
T ss_pred CHHHHHHHHHHCCCeEEEE--ECCCCCCHHHHhCCccCCCCeeccCCCCceEEEcCHHHHHHHHHHHHHHHHhhhccccc
Confidence 5899999999999999999 7777 599999999999999999 999999999999999999999887765442222
Q ss_pred ccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhHHHHHHHHHHHHHHhh
Q 013114 141 VLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAE 220 (449)
Q Consensus 141 ~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP~~l~~~l~~l~~~~~ 220 (449)
....+.+++...||++|++++.++.++++.. +++||+|||||||||||||||++|+.+.||+++++++++
T Consensus 79 -~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~---------~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~ 148 (284)
T TIGR00345 79 -MLGDQLEGAALSPGIDEIAAFDEFLKHMTDA---------ENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRS 148 (284)
T ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh---------hccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2234456678899999999988887776421 267999999999999999999999999999999999988
Q ss_pred hhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHH---HHHHHHHHHhhcCCCceEEEEEecCCCcchHHHHHH
Q 013114 221 KTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAM---DRMLERGSSALAEPHKFGCFLVMNPNNRTSVNSALR 297 (449)
Q Consensus 221 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l---~~~~~~~~~~L~dp~~t~v~LVt~PE~~~~i~Ea~r 297 (449)
+. + |+..++ .+ . .+.+++++.+ .+.+++++++|+||++|+|++|++|| .+++.|+.+
T Consensus 149 ~~--~----~~~~~~----~~---~------~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe-~~si~e~~r 208 (284)
T TIGR00345 149 KL--G----PMLKLF----MG---A------GESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPE-KMSLYESER 208 (284)
T ss_pred HH--H----HHHHHh----cC---C------CcchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCC-CCcHHHHHH
Confidence 75 2 322211 11 0 1224455555 44577899999999999999999999 799999999
Q ss_pred HHHHHHHcCCcccEEEEecC-------cc------ccHHHHHHHHHhcCCCCeeeccCCCCCCccchhhhhccccHHHHH
Q 013114 298 YWGCTIQAGAQVAGAICTAS-------PH------LDEESAERVRKNFSPLPLSFLPHLPTDSSLDWNTIMLNPAGKEAR 364 (449)
Q Consensus 298 ~~~~L~~~Gi~V~~vvvN~~-------~~------~q~~~l~~i~~~F~~lpi~~vP~~~~e~~~~~~~~g~~~L~~la~ 364 (449)
+++.|+.+|+++.++|+|+- ++ .|+.+++++++.|.++|++++|+++.|| .|.+.|..+++
T Consensus 209 l~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~~~e~------~G~~~L~~l~~ 282 (284)
T TIGR00345 209 AHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQKEEM------VGLEALKRLSK 282 (284)
T ss_pred HHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCCCC------CCHHHHHHHHh
Confidence 99999999999999999941 12 2455999999999999999999999999 88899998876
Q ss_pred H
Q 013114 365 D 365 (449)
Q Consensus 365 ~ 365 (449)
.
T Consensus 283 ~ 283 (284)
T TIGR00345 283 T 283 (284)
T ss_pred h
Confidence 4
No 5
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=100.00 E-value=1.1e-40 Score=325.34 Aligned_cols=235 Identities=28% Similarity=0.391 Sum_probs=196.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccC--CCCeeecCCcceeecCchhhhhhhH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIG--NSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~--~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
|+++|+||||+||||+|+++|.++|++|+||||| |+|| +++++||.+.+ .++....+||++.++|+...++++|
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlv--d~D~~~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~ 78 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLV--STDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR 78 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEE--eCCCcccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHH
Confidence 6899999999999999999999999999999999 8887 59999999854 4455667999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
.++.+.+.... ....+..+...++.. ||++|++++.++.++++ +.+||+|||||||||+++|+|++|
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-Pg~~e~l~~~~~~~~l~-----------~~~yD~VVvDtpPtg~tlrlL~lp 145 (254)
T cd00550 79 QEVLEPIEANL-LLEMLKGILEEELES-PGIEEIAAFDEFSRYID-----------EAEYDVVVFDTAPTGHTLRLLSLP 145 (254)
T ss_pred HHHHHHHHhhc-cchhHHHHHHHHhcC-CCHHHHHHHHHHHHHHh-----------cCCCCEEEECCCCcHHHHHHHHhH
Confidence 88877665432 111122344445555 99999998888777764 357999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEec
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMN 285 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~ 285 (449)
+.+.| +++++.||..|++++|++
T Consensus 146 ~~l~~---------------------------------------------------------~~~~l~d~~~~~~vlV~~ 168 (254)
T cd00550 146 TVLSW---------------------------------------------------------AREILSDPERTSFRLVCI 168 (254)
T ss_pred HHHHH---------------------------------------------------------HHHHhcCCcceEEEEEeC
Confidence 98776 012356899999999999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCcccEEEEecC--------cc------ccHHHHHHHHHhcCCCCeeeccCCCCCCccch
Q 013114 286 PNNRTSVNSALRYWGCTIQAGAQVAGAICTAS--------PH------LDEESAERVRKNFSPLPLSFLPHLPTDSSLDW 351 (449)
Q Consensus 286 PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~--------~~------~q~~~l~~i~~~F~~lpi~~vP~~~~e~~~~~ 351 (449)
|+ .+++.|++|++++|+.+|+++.++|+|+. ++ .|+.+++++++.|++.|++++|+++.|+
T Consensus 169 p~-~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~e~---- 243 (254)
T cd00550 169 PE-KMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPEEV---- 243 (254)
T ss_pred CC-hhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCCCC----
Confidence 99 79999999999999999999999999941 22 2456999999999999999999999999
Q ss_pred hhhhccccHHHH
Q 013114 352 NTIMLNPAGKEA 363 (449)
Q Consensus 352 ~~~g~~~L~~la 363 (449)
.|.++|+.++
T Consensus 244 --~g~~~L~~~~ 253 (254)
T cd00550 244 --VGLEKLEQFA 253 (254)
T ss_pred --CCHHHHHHHh
Confidence 8888887754
No 6
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.92 E-value=1.2e-23 Score=200.76 Aligned_cols=201 Identities=25% Similarity=0.307 Sum_probs=137.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccCCCCeeecCCcceeec--CchhhhhhhHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNSNLSAVRI--ETTKMFLEPLNWL 128 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~~~p~~i~~~L~~~ei--d~~~~~~~~~~~~ 128 (449)
|++++||||+||||+|+++|.++|++|+||+++ |+||..+-.. ...++|+.... +.+...+.+..++
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~--~~d~~~~~~~---------~~~~~L~~~l~~~~~~~~~~~~~~~~ 69 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLV--STDPAHNLSD---------KGLPNLSDAFIVEDPEIAPNLYREEV 69 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE--ECCCCccccc---------ccCCCchhhhccCChHHHHHHHHHHH
Confidence 579999999999999999999999999999999 9998532110 12345554432 1111122222222
Q ss_pred HHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhHHHH
Q 013114 129 KQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKA 208 (449)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP~~l 208 (449)
..... ..............+....||.+|++.+. ++++.+++ .+||+|||||||++++++++.
T Consensus 70 ~~~~~-~~~~~~~~~~~~~~~~~~~p~~~ell~~~---~l~~~l~~--------~~yD~IIiD~pp~~~~~~~l~----- 132 (217)
T cd02035 70 DATRR-VERAWGGEGGLMLELAAALPGIEELASLL---AVFREFSE--------GLYDVIVFDTAPTGHTLRLLV----- 132 (217)
T ss_pred HHHHH-hhhcccchhhhHHhHhccCCCHHHHHHHH---HHHHHHhc--------CCCCEEEECCCCchHHHHHHH-----
Confidence 11100 00000001123344556789999988754 44444432 349999999999998766550
Q ss_pred HHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCCC
Q 013114 209 RLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMNPNN 288 (449)
Q Consensus 209 ~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~PE~ 288 (449)
.+.+.|+..+.+++|++|+
T Consensus 133 ------------------------------------------------------------~~~l~~~~~~~vllV~~p~- 151 (217)
T cd02035 133 ------------------------------------------------------------RELLTDPERTSFRLVTLPE- 151 (217)
T ss_pred ------------------------------------------------------------HHHccCCCceEEEEEeCCC-
Confidence 0114467678999999999
Q ss_pred cchHHHHHHHHHHHHHcCCcccEEEEecCc--------c------ccHHHHHHHHHhcCCCCeeec
Q 013114 289 RTSVNSALRYWGCTIQAGAQVAGAICTASP--------H------LDEESAERVRKNFSPLPLSFL 340 (449)
Q Consensus 289 ~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~--------~------~q~~~l~~i~~~F~~lpi~~v 340 (449)
..++.+++++++.++.+|+++.++|+|+.. + .|+++++++++.|.+.|++++
T Consensus 152 ~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~ 217 (217)
T cd02035 152 KLPLYETERAITELALYGIPVDAVVVNRVLPAEVDDDPFLAARRQIQQKYLAEIEELFDDLPIVPV 217 (217)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccCCCHHHHHHHHHHHHHHHHHHHHcCCCceecC
Confidence 799999999999999999999999999421 1 245699999999999998753
No 7
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.79 E-value=2.2e-18 Score=157.74 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=56.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc-----------ccHHHHHHHHHhcCCCCeeeccCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH-----------LDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~-----------~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
..+++|++|+ ..++.++.+++..++..|+++.++|+|+... ++..+++++.+.|....+..+|+.
T Consensus 93 d~viiV~~p~-~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ 168 (169)
T cd02037 93 DGAVIVTTPQ-EVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLD 168 (169)
T ss_pred CeEEEEECCc-hhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCC
Confidence 4889999999 7999999999999999999999999996421 234578999999988889998874
No 8
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.4e-18 Score=165.26 Aligned_cols=189 Identities=22% Similarity=0.283 Sum_probs=129.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC---cchhhhhhhcc--------CCCCeeecCCcceeecC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD---PTAEYILNCKI--------GNSPVVCNSNLSAVRIE 116 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D---psl~d~~g~~~--------~~~p~~i~~~L~~~eid 116 (449)
+.+|++.+|||||||||+|+++|.+||+.|++|.++ |.| |++..++|.+. +..|+.+..||..+.+-
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL--D~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~g 124 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL--DADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMG 124 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE--eecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEee
Confidence 368999999999999999999999999999999999 888 68888888762 22333344444444322
Q ss_pred chhhhhhhHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCch
Q 013114 117 TTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPE 196 (449)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg 196 (449)
.+.. ..++..++-|.- .+..|++++.. ..+++.||+||||||.-
T Consensus 125 ------------------------fLl~-~~~~~vIwRGpk---k~~~I~qflk~--------vdwg~lDyLviDtPPGt 168 (300)
T KOG3022|consen 125 ------------------------FLLK-PRDDSVIWRGPK---KNSMIKQFLKD--------VDWGELDYLVIDTPPGT 168 (300)
T ss_pred ------------------------eecC-CCCccceeechH---HHHHHHHHHhc--------CCCCCcCEEEEeCCCCC
Confidence 1110 012234566632 35567777654 34689999999999954
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 013114 197 ETLRMIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPH 276 (449)
Q Consensus 197 ~tlrlL~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~ 276 (449)
.- +.+ .+.. .+ +.
T Consensus 169 sD---------------------ehl---s~~~-----------------------------------------~~--~~ 181 (300)
T KOG3022|consen 169 SD---------------------EHL---SLVQ-----------------------------------------FL--RE 181 (300)
T ss_pred Ch---------------------hhh---heee-----------------------------------------cc--cc
Confidence 31 010 0100 01 11
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccc-----------cHHHHHHHHHhcCCCCeeeccC
Q 013114 277 KFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHL-----------DEESAERVRKNFSPLPLSFLPH 342 (449)
Q Consensus 277 ~t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~-----------q~~~l~~i~~~F~~lpi~~vP~ 342 (449)
.+..++||||. .+++.+++|-.......|+++=|+|.|+..|. ...--+++.+.+.=.-+..+|+
T Consensus 182 ~~gAviVTTPQ-~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPl 257 (300)
T KOG3022|consen 182 SDGAVIVTTPQ-EVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPL 257 (300)
T ss_pred cCceEEEeCch-hhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCC
Confidence 16789999999 69999999999999999999999999976542 2223466777774334455555
No 9
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.75 E-value=4.1e-17 Score=167.42 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=115.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhccCCCCeeecCCcceeecCchhhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEP 124 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~ 124 (449)
++.|.+++|||||||||+|+|+|.+||+.|+||+|| |+||. +..+||.... .+. ..++.....+....
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI--D~D~qgps~~~~lg~~~~-~~~-~~~~~~i~p~~~~g----- 177 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL--DADIYGPSIPTMLGAEDQ-RPT-SPDGTHMAPIMAHG----- 177 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE--eCCCCCCCcchhcCCccc-CCc-ccCCceeeeeeccC-----
Confidence 356677889999999999999999999999999999 99974 5567876421 111 11121111100000
Q ss_pred HHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHH-HHhcccccccCcCCCccEEEEcCCCchHHHHHhh
Q 013114 125 LNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLV-GFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIG 203 (449)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~-~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~ 203 (449)
+......++ .. .+....+.|.. ....+.+++ +.+ +++||||||||||+.+...+
T Consensus 178 ---~~~~~~~~l------~~--~~~~~i~~g~~---~~~~l~~~l~~~~---------~~~yDyvIID~PPg~gd~~l-- 232 (369)
T PRK11670 178 ---LATNSIGYL------VT--DDNAMVWRGPM---ASKALMQMLQETL---------WPDLDYLVLDMPPGTGDIQL-- 232 (369)
T ss_pred ---cccccHHHh------cC--cCcceeecCcc---hHHHHHHHHHHHh---------hccCCEEEEeCCCCCchHHH--
Confidence 000000000 00 00001112211 112333333 221 46799999999996541100
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Q 013114 204 VSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLV 283 (449)
Q Consensus 204 lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LV 283 (449)
... .++ + ...+++|
T Consensus 233 -----------------------~~~----------------------------------------~l~--a-ad~viiV 246 (369)
T PRK11670 233 -----------------------TLA----------------------------------------QNI--P-VTGAVVV 246 (369)
T ss_pred -----------------------HHh----------------------------------------hhc--c-CCeEEEE
Confidence 000 000 1 1478999
Q ss_pred ecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc-----------ccHHHHHHHHHhcCCCCeeeccCC
Q 013114 284 MNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH-----------LDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 284 t~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~-----------~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
++|+ ..++.++.+....+...++++-|+|+|+..+ |.....+++.+.|...-+..||+.
T Consensus 247 ~tp~-~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~ 316 (369)
T PRK11670 247 TTPQ-DIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLH 316 (369)
T ss_pred ecCc-hhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCC
Confidence 9999 7999999999999999999999999996422 122247888888865455566654
No 10
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.73 E-value=1.1e-16 Score=157.21 Aligned_cols=172 Identities=21% Similarity=0.231 Sum_probs=116.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC---cchhhhhhhccCCCCeeecCCcceeecCchhhhhh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD---PTAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLE 123 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D---psl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~ 123 (449)
....|.+.+||||+||||+|+++|.++|+.|+||+++ |+| |++..+||.+.......+..+-. +.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli--DaD~~gps~~~~l~~~~~~g~~~~~~g~~---~~------- 123 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL--DADLRGPSIPRMLGLENLPGLTELLAGEA---LE------- 123 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE--eCcCCCCchHHHhCCCCCCCcccccCCCc---cc-------
Confidence 4577888999999999999999999999999999999 888 57999999853222222221110 11
Q ss_pred hHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhh
Q 013114 124 PLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIG 203 (449)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~ 203 (449)
.+..... ...+.-+........| .+.+...++.+++...+ +++||||||||||......
T Consensus 124 ---~~~~~~~-----~~~lsi~~~~~~p~~~--r~~l~s~~~~qll~~~~--------~~~~D~vIID~PP~~g~~d--- 182 (265)
T COG0489 124 ---PVIQHDG-----IKVLSILPLGPVPVIP--RGLLGSKAMLQLLEDVL--------WGEYDYVIIDTPPGTGDAD--- 182 (265)
T ss_pred ---cceecCc-----cceEEEEecCCCCCCC--hHhhhhHHHHHHHHHHh--------ccCCCEEEEeCCCCchHHH---
Confidence 0111000 0001111111122233 26777888888887664 4679999999999654210
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Q 013114 204 VSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLV 283 (449)
Q Consensus 204 lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LV 283 (449)
..++ +.+.| .+++|
T Consensus 183 ---------------------~~i~-----------------------------------------~~~~~----g~viV 196 (265)
T COG0489 183 ---------------------ATVL-----------------------------------------QRIPD----GVVIV 196 (265)
T ss_pred ---------------------HHHH-----------------------------------------hccCC----eEEEE
Confidence 0000 00223 89999
Q ss_pred ecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc
Q 013114 284 MNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP 318 (449)
Q Consensus 284 t~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~ 318 (449)
++|+ ..+..+++++...++..+.+|-|||.|+..
T Consensus 197 t~p~-~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~ 230 (265)
T COG0489 197 TTPG-KTALEDVKKAIDMLEKAGIPVLGVVENMSY 230 (265)
T ss_pred eCCc-cchHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 9999 699999999999999999999999999543
No 11
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.71 E-value=9e-17 Score=152.60 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=50.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHc----CCcccEEEEecCc-cccHHHHHHHHHhcCCCCeeeccC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQA----GAQVAGAICTASP-HLDEESAERVRKNFSPLPLSFLPH 342 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~----Gi~V~~vvvN~~~-~~q~~~l~~i~~~F~~lpi~~vP~ 342 (449)
..+.+|++|+ ..++..+.++...++.+ +.++.++|+|+.. ..+...++++.+.|+...+..||+
T Consensus 143 d~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~vl~~IP~ 211 (212)
T cd02117 143 DEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIHFVPR 211 (212)
T ss_pred cEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCEEEecCC
Confidence 3789999999 79999888888877765 6678899999643 234456789999997777777775
No 12
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.70 E-value=1.9e-16 Score=156.12 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=48.1
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHc---CCcccEEEEecCccc-cHHHHHHHHHhcCCCCeeeccC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQA---GAQVAGAICTASPHL-DEESAERVRKNFSPLPLSFLPH 342 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~---Gi~V~~vvvN~~~~~-q~~~l~~i~~~F~~lpi~~vP~ 342 (449)
..+++|++|| ..++..+.++...++.. ++++.++|+|+.... +...++++++.|+..-...||.
T Consensus 143 d~vlip~~p~-~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~~~e~l~~~~~~~vl~~Ip~ 210 (273)
T PRK13232 143 KEIYIVASGE-LMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQLIHFVPR 210 (273)
T ss_pred ceEEEecCch-HHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHHHHHHHHHHhCCCeEEECCC
Confidence 3789999999 89999988888888754 677889999964322 3456788888887644555564
No 13
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.69 E-value=1.4e-16 Score=157.06 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=47.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHH----HHcCCcccEEEEecCc-cccHHHHHHHHHhcCCCCeeeccCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCT----IQAGAQVAGAICTASP-HLDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L----~~~Gi~V~~vvvN~~~-~~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
..+++|+.|+ ..++.-+.++...+ ...++++-++|+|+.. ..+...++++.+.|+...+..||..
T Consensus 145 d~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~e~l~~~~~~~~l~~Ip~~ 214 (275)
T PRK13233 145 QEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQMIHFVPRD 214 (275)
T ss_pred ceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHHHHHHHHcCCceeeecCcc
Confidence 4789999999 79998888886555 3557888899999643 2334578889988876555566653
No 14
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.69 E-value=6.5e-16 Score=149.29 Aligned_cols=47 Identities=32% Similarity=0.343 Sum_probs=41.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
.|.++++||||||||+|+++|.++|++|+||++| |+||. ++..||.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli--D~D~~~~~~~~~~g~~ 51 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL--DADITMANLELILGME 51 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE--eCCCCCccceeEeCCC
Confidence 5788899999999999999999999999999999 99983 66666654
No 15
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.68 E-value=4.6e-16 Score=155.31 Aligned_cols=41 Identities=34% Similarity=0.491 Sum_probs=38.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
.+|++.|+|||||||||+|+|+|..||++|+||||+ |+||.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli--D~D~q 45 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV--GCDPK 45 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE--EccCC
Confidence 359999999999999999999999999999999999 99995
No 16
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.67 E-value=7.2e-16 Score=152.03 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=37.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYIL 95 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~ 95 (449)
+.|.++ |||||||||+|+|+|.+||++|+||||| |+||. ..+.+
T Consensus 2 ~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlI--D~Dpq~~~t~~l 47 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVV--GCDPKADSTRLL 47 (274)
T ss_pred CEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEE--ecCCcccccccc
Confidence 344555 9999999999999999999999999999 99995 44444
No 17
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.67 E-value=4.5e-16 Score=153.87 Aligned_cols=46 Identities=33% Similarity=0.411 Sum_probs=39.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
|+.|.+.|||||||||+|+++|.+||++|+||||| |.||. ++..|+
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli--D~Dpq~n~t~~l~ 48 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV--GCDPKADCTRNLV 48 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE--eeCCccccccccc
Confidence 34555559999999999999999999999999999 99995 555554
No 18
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.67 E-value=1.3e-15 Score=149.21 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=45.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHH----cCCcccEEEEecCcc-ccHHHHHHHHHhcCCCCeeeccCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQ----AGAQVAGAICTASPH-LDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~----~Gi~V~~vvvN~~~~-~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
..+++|++|+ ..++..+.++...+.. .+.++.+||+|+... .+...++++.+.|....+..||+.
T Consensus 143 D~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~~~~~~~~l~~~~g~~vl~~Ip~~ 212 (270)
T cd02040 143 QEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQMIHFVPRD 212 (270)
T ss_pred cEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecCCChhHHHHHHHHHHHcCCCeEeecCCc
Confidence 3789999998 7999888777766544 367888888886432 234567778787765444556654
No 19
>CHL00175 minD septum-site determining protein; Validated
Probab=99.67 E-value=2.4e-15 Score=148.70 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=41.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
..|.+++|||||||||+|+++|.++|+.|+||++| |+||. ++..||.+
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli--D~D~~~~~l~~~lg~~ 66 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI--DADIGLRNLDLLLGLE 66 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE--eCCCCCCChhhhcCCC
Confidence 45666677999999999999999999999999999 99983 66777765
No 20
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.67 E-value=1.4e-15 Score=149.33 Aligned_cols=47 Identities=26% Similarity=0.466 Sum_probs=40.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
|++||.+.|||||||||+|+|+|.++|++|+||||| |.||. ++..++
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli--D~Dpq~~~t~~l~ 49 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI--GCDPKHDSTFTLT 49 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eccCCcchhhhhc
Confidence 457777779999999999999999999999999999 99995 555554
No 21
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.66 E-value=2.6e-15 Score=156.09 Aligned_cols=51 Identities=31% Similarity=0.365 Sum_probs=45.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
+++..|.+++.||||||||+|+++|.++|++|+||||| |+||. ++..||..
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI--DlDpQ~~lt~~~g~~ 171 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV--DLDPQASLSALLGVL 171 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE--cCCCCCCHHHHcCCC
Confidence 35677888889999999999999999999999999999 99994 77888764
No 22
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.66 E-value=2.5e-16 Score=146.87 Aligned_cols=192 Identities=20% Similarity=0.205 Sum_probs=115.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhccCCCCeeecCCcceeecCchhhhhhhHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLN 126 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~~ 126 (449)
-|++.+|||||||||++||++.+||++|+||+|| |+|-. |.-++|++..- +-+-..+++-+ +.+
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li--D~DiGLRNLDlimGlE~Ri----VYd~vdVi~g~--~~l----- 70 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI--DFDIGLRNLDLIMGLENRI----VYDLVDVIEGE--ATL----- 70 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE--ecCcCchhhhhhhccccee----eeeehhhhcCc--cch-----
Confidence 3555669999999999999999999999999999 99974 66677775211 11111122111 111
Q ss_pred HHHHHHHhhhhcccccCCccccccCCCCChH----HHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHh
Q 013114 127 WLKQADARLNMTQGVLGGVVGEELGVLPGMD----SIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMI 202 (449)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~----e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL 202 (449)
.+.+.. .--.+.|..+|... +.+.-..+.++++.++. ..|||||+|||..-+.
T Consensus 71 --~QALIk---------DKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~--------~~fDyIi~DsPAGIE~---- 127 (272)
T COG2894 71 --NQALIK---------DKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA--------MDFDYIIIDSPAGIEQ---- 127 (272)
T ss_pred --hhHhhc---------cccCCceEecccccccCcccCCHHHHHHHHHHHHh--------cCCCEEEecCcchHHH----
Confidence 111110 00001111122211 12223345556666542 5799999999998872
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 013114 203 GVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFL 282 (449)
Q Consensus 203 ~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~L 282 (449)
.. ..+. ..+| ...+
T Consensus 128 ------------------G~--~~A~------------------------------------------~~Ad----~AiV 141 (272)
T COG2894 128 ------------------GF--KNAV------------------------------------------YFAD----EAIV 141 (272)
T ss_pred ------------------HH--Hhhh------------------------------------------hccc----eEEE
Confidence 00 0000 0224 5599
Q ss_pred EecCCCcchHHHHHHHHHHHHHcCC----cc---cEEEEecCcc-c----cHHHHHHHHHhcCCCCeeeccCCC
Q 013114 283 VMNPNNRTSVNSALRYWGCTIQAGA----QV---AGAICTASPH-L----DEESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 283 Vt~PE~~~~i~Ea~r~~~~L~~~Gi----~V---~~vvvN~~~~-~----q~~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
||||| --|++++-|.++.|...+. .- ..+++|+... . +--.++++.+-..-..|..+|...
T Consensus 142 VtnPE-vSsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~ 214 (272)
T COG2894 142 VTNPE-VSSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQ 214 (272)
T ss_pred EcCCC-ccccccchhheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceEEeecCch
Confidence 99999 7999999999999987773 32 5789995321 1 112567777777555566667643
No 23
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.66 E-value=2.4e-15 Score=147.11 Aligned_cols=192 Identities=21% Similarity=0.249 Sum_probs=116.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHH-HHHHHHcCCceEEEecCCCcc---hhhhhhhccCCCCeeecCCcceeecCchhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFA-AQHYAMAGLSTCLVLHSQDPT---AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLE 123 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaal-A~~lA~~G~rvLLv~~d~Dps---l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~ 123 (449)
++.|.+.+|||||||||+++|+ |..++.+|++|+++ |+|++ ++..||... .++.+.+-|+. +.+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~i--DaD~g~~nL~~~~g~~~--~~~~l~dvL~~-~~~------- 69 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLI--DADLGLGNLSLLLGVES--KPTTLHDVLAG-EAS------- 69 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEE--ecCCCCCcHHHHhCCCC--CcccHHHHHhC-CCC-------
Confidence 3578888899999999999999 55555568888999 99984 788888763 22222222221 111
Q ss_pred hHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHH--HHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHH
Q 013114 124 PLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFS--AFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRM 201 (449)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~--l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrl 201 (449)
+.+. ..... ..++ .-+....+++++.. ...+..++..+ ...||||++||||..+-
T Consensus 70 ----~~Di---~~~~~--~~gl--~vipg~~~~~~~~~~~~~~~~~~~~~l---------~~~~D~iliD~~aGl~~--- 126 (262)
T COG0455 70 ----IEDI---IYETP--QDGL--YVLPGGSGLEDLAKLDPEDLEDVIKEL---------EELYDYILIDTGAGLSR--- 126 (262)
T ss_pred ----HhHe---eeecC--cCCE--EEeeCCCChHHHhhcCHHHHHHHHHHH---------HhcCCEEEEeCCCCccH---
Confidence 1110 00000 0011 11222333444322 12333444443 24689999999998761
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 013114 202 IGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCF 281 (449)
Q Consensus 202 L~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~ 281 (449)
. .. ..++.. ..++
T Consensus 127 -------------------~-----~~----------------------------------------~~~~~s---d~~v 139 (262)
T COG0455 127 -------------------D-----TL----------------------------------------SFILSS---DELV 139 (262)
T ss_pred -------------------H-----HH----------------------------------------HHHHhc---CcEE
Confidence 0 00 001222 4889
Q ss_pred EEecCCCcchHHHHHHHHHHHHHcCCcccE--EEEecCc-cccH----HHHHHHHHhcCCCCeeeccCCC
Q 013114 282 LVMNPNNRTSVNSALRYWGCTIQAGAQVAG--AICTASP-HLDE----ESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 282 LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~--vvvN~~~-~~q~----~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
+|++|| .-++..|..+...+..+|++..+ +|+|+-. ..+. ..+.+..+.|. ++..+|+.+
T Consensus 140 iVt~pe-~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~--~~~~i~~~~ 206 (262)
T COG0455 140 IVTTPE-PTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVP--VLQVIPFDP 206 (262)
T ss_pred EEeCCC-cchHHHHHHHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCC--ceeEeccCh
Confidence 999999 89999999999999999999998 9999642 2221 13444455554 677777766
No 24
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.65 E-value=2.1e-15 Score=148.04 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=38.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
|+|.++ |||||||||+|+++|.++|++|+||||| |+||. ++..|+
T Consensus 1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLli--D~D~q~~~~~~l~ 47 (268)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQI--GCDPKHDSTFTLT 47 (268)
T ss_pred CEEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEE--ecCccccccceec
Confidence 466666 9999999999999999999999999999 99995 444443
No 25
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.65 E-value=1.3e-15 Score=150.09 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=106.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
..|.+.++|||+||||+|+++|..+|+.|+||||| |+|+ +++..||.+... +|...-.. +.+
T Consensus 104 ~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI--D~D~~~~~~~~~~~~~~~~-------gl~~~l~~------~~~ 168 (274)
T TIGR03029 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI--DANLRDPVQHRNFKLSEQR-------GLSDILAG------RSD 168 (274)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE--eCCCCCccHHHhcCCCCCC-------CHHHHhCC------CCC
Confidence 56777778999999999999999999999999999 9986 366667653221 22111000 001
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
. .. ..... ....+.-+.+... .+...+++....+..+++.++ ++||||||||||..+. +
T Consensus 169 ~--~~-i~~~~-~~~~l~~lp~g~~--~~~~~~~~~~~~~~~~l~~l~---------~~yD~ViiD~pp~~~~------~ 227 (274)
T TIGR03029 169 L--EV-ITHIP-ALENLSVLPAGAI--PPNPQELLARPAFTDLLNKVM---------GDYDVVIVDTPSAEHS------S 227 (274)
T ss_pred H--HH-eeecC-CCCCEEEEeCcCC--CCCHHHHhCcHHHHHHHHHHH---------hcCCEEEEeCCCcccc------c
Confidence 0 00 00000 0011111222211 223334554555666666553 5799999999997541 1
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEec
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMN 285 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~ 285 (449)
+. . .+ .-..| .+.+|++
T Consensus 228 d~---------------------~---------------------------~~-----------~~~~d----~vilV~~ 244 (274)
T TIGR03029 228 DA---------------------Q---------------------------IV-----------ATRAR----GTLIVSR 244 (274)
T ss_pred HH---------------------H---------------------------HH-----------HHhCC----eEEEEEE
Confidence 00 0 00 00224 7889999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 286 PNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 286 PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
++ ..+..++.++...|...|.++-|+|+|.
T Consensus 245 ~~-~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 245 VN-ETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CC-CCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99 6999999999999999999999999993
No 26
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.64 E-value=4.6e-15 Score=147.74 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYIL 95 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~ 95 (449)
|+ +.+.|||||||||+|+++|.++|++|+||||| |+||. ++..+
T Consensus 1 m~-ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI--D~DpQ~n~t~~l 46 (290)
T CHL00072 1 MK-LAVYGKGGIGKSTTSCNISIALARRGKKVLQI--GCDPKHDSTFTL 46 (290)
T ss_pred Ce-EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE--eccCCCcccccc
Confidence 35 56677999999999999999999999999999 99995 44444
No 27
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.64 E-value=2.1e-15 Score=148.68 Aligned_cols=39 Identities=36% Similarity=0.487 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|+|.+.|||||||||+|+++|.+||++|+||||| |.||.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli--D~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV--GCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE--eCCCC
Confidence 4566679999999999999999999999999999 99995
No 28
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.64 E-value=4.2e-15 Score=145.91 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
|.|.++ |||||||||+|+|+|.++|++|+||||| |+||. ++..++
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlli--D~Dpq~~~~~~l~ 47 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQI--GCDPKHDSTFTLT 47 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEE--ecCCCCCcceecc
Confidence 455555 8999999999999999999999999999 99995 344443
No 29
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.63 E-value=6.8e-15 Score=138.66 Aligned_cols=171 Identities=18% Similarity=0.180 Sum_probs=104.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhccCCCCeeecCCcceeecCchhhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEP 124 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~ 124 (449)
+..|.+.++|||+||||+|+++|.++|+.|+|||+| |+|+. ++..|+.+.. . .++..+- ... ..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI--D~D~~~~~l~~~~~~~~~--~----~~l~~~l-~~~----~~ 83 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI--DGDMRNSVMSGTFKSQNK--I----TGLTNFL-SGT----TD 83 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE--eCCCCChhHHHHhCCCCC--C----CCHHHHh-cCC----CC
Confidence 456777778999999999999999999999999999 99974 4455554310 0 1111100 000 01
Q ss_pred HHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhh
Q 013114 125 LNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGV 204 (449)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~l 204 (449)
+. +..... ....+.-+..... .+...+.+....+.++++.++ .+||+|||||||.+..
T Consensus 84 l~---~~i~~~--~~~~l~~l~~g~~--~~~~~~~l~~~~l~~~l~~l~---------~~yD~ViiD~pp~~~~------ 141 (204)
T TIGR01007 84 LS---DAICDT--NIENLFVITSGPV--PPNPTELLQSSNFKTLIETLR---------KYFDYIIIDTPPIGTV------ 141 (204)
T ss_pred HH---HhcccC--CCCCEEEEeCCCC--CCCHHHHhCcHHHHHHHHHHH---------hcCCEEEEeCCCcccc------
Confidence 11 111000 0011111111111 233333343445566666553 5799999999994321
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 013114 205 SSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVM 284 (449)
Q Consensus 205 P~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt 284 (449)
++. . .+ .-..| .+.+|+
T Consensus 142 ~~~--------------------------~----------------------~~-----------~~~~D----~vilV~ 158 (204)
T TIGR01007 142 TDA--------------------------A----------------------II-----------ARACD----ASILVT 158 (204)
T ss_pred chH--------------------------H----------------------HH-----------HHhCC----eEEEEE
Confidence 100 0 00 00224 789999
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCcccEEEEecC
Q 013114 285 NPNNRTSVNSALRYWGCTIQAGAQVAGAICTAS 317 (449)
Q Consensus 285 ~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~ 317 (449)
.|+ ..+..++.++.+.++..|.++-|+|+|+.
T Consensus 159 ~~~-~~~~~~~~~~~~~l~~~~~~~~gvVlN~~ 190 (204)
T TIGR01007 159 DAG-EIKKRDVQKAKEQLEQTGSNFLGVVLNKV 190 (204)
T ss_pred ECC-CCCHHHHHHHHHHHHhCCCCEEEEEEeCc
Confidence 999 69999999999999999999999999953
No 30
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.63 E-value=2.7e-15 Score=149.72 Aligned_cols=40 Identities=33% Similarity=0.475 Sum_probs=36.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
||++.|+|||||||||+|+|+|..+|++|+|||+| |+||.
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli--D~D~q 43 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV--GCDPK 43 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE--ecccc
Confidence 56666679999999999999999999999999999 99995
No 31
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.61 E-value=7.5e-15 Score=139.03 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=100.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc---hhhhhhhccCCCCeeecCCcceeecCchhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT---AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLE 123 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps---l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~ 123 (449)
+..|.+.++|||+||||+|+++|.++|+ .|+||||| |+|+. ++..|+.+... ++..+--+...
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv--D~D~~~~~~~~~~~~~~~~-------~l~~~l~~~~~---- 101 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI--DADLRRPSLHRTLGLEAEP-------GLSDCLLDPVL---- 101 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE--ECCCCChhhhheeCCCCCC-------CHHHHHcCCCC----
Confidence 3456666679999999999999999997 69999999 99974 56666654221 22111000000
Q ss_pred hHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCc--cEEEEcCCCchHHHHH
Q 013114 124 PLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKF--DVIVYDGISPEETLRM 201 (449)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~y--D~IVvD~pPtg~tlrl 201 (449)
.|++. .... ....+.-+..... .+...+.+....+.++++.++ .+| |||||||||....-
T Consensus 102 ~l~~~---i~~~--~~~~l~vl~~g~~--~~~~~~~~~~~~l~~~l~~l~---------~~y~~D~IiiD~pp~~~~~-- 163 (207)
T TIGR03018 102 DLADV---LVPT--NIGRLSLLPAGRR--HPNPTELLASQRMRSLLHELA---------RRYPDRIIIIDTPPLLVFS-- 163 (207)
T ss_pred CHHHH---hccC--CCCCEEEEeCCCC--CCCHHHHhCcHHHHHHHHHHH---------hhCCCCEEEEECCCCcchh--
Confidence 11111 1000 0011111111111 122234444455666666554 346 99999999988520
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 013114 202 IGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCF 281 (449)
Q Consensus 202 L~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~ 281 (449)
+ .. . ++ ...| .++
T Consensus 164 ----~---------------------~~----~----------------------l~------------~~aD----~vi 176 (207)
T TIGR03018 164 ----E---------------------AR----A----------------------LA------------RLVG----QIV 176 (207)
T ss_pred ----H---------------------HH----H----------------------HH------------HhCC----EEE
Confidence 0 00 0 00 0224 789
Q ss_pred EEecCCCcchHHHHHHHHHHHHHcCCcccEEEEe
Q 013114 282 LVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICT 315 (449)
Q Consensus 282 LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN 315 (449)
+|+.|+ ..+...+.+++..++ +.++-|+|+|
T Consensus 177 iV~~~~-~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 177 LVVEEG-RTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred EEEECC-CCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 999999 799999999999998 7899999998
No 32
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.61 E-value=3.2e-14 Score=131.14 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=38.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCK 98 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~ 98 (449)
+|.+.+||||+||||+|+|+|..+ +||+|+ |+|+ +++..||.+
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlli--D~D~~~~~~~~~~~~~ 46 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLA--DCDVDAPNLHLFLKPE 46 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEE--ECCCCCCchhhhcCCC
Confidence 588999999999999999999999 899999 9995 477788865
No 33
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.61 E-value=2.3e-14 Score=138.29 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=42.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
|..|.++++||||||||+|+++|..+|++|+||||| |+||. ++..||.+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli--D~D~q~~l~~~~~~~ 51 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI--DLDPQNLLRLHFGMD 51 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE--eCCCcchHHHHhCCC
Confidence 356778888999999999999999999999999999 99994 66677754
No 34
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.61 E-value=1.5e-14 Score=142.01 Aligned_cols=48 Identities=33% Similarity=0.502 Sum_probs=41.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
..|.++++||||||||+|+++|.++|++|+||+|| |+||. ++..||.+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv--D~D~~~~~~~~~lg~~ 53 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI--DFDIGLRNLDLIMGCE 53 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE--ECCCCCCChhhhhCCC
Confidence 45777788999999999999999999999999999 99983 66677764
No 35
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.60 E-value=1.8e-14 Score=131.81 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=46.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc---ccHHHHHHHHHhcCCCCeeeccC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH---LDEESAERVRKNFSPLPLSFLPH 342 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~---~q~~~l~~i~~~F~~lpi~~vP~ 342 (449)
.+++|+.|+ ..++.++.++.+.++..+.+..++|+|+... .....++++++.++...+..+|+
T Consensus 87 ~viiv~~~~-~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~~~~~v~~~Ip~ 152 (179)
T cd02036 87 EALLVTTPE-ISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLLGVIPE 152 (179)
T ss_pred cEEEEeCCC-cchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHHhCCCEEEEecC
Confidence 579999999 7999999999999999888888999995322 12233577887775333445554
No 36
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.60 E-value=1.1e-14 Score=141.32 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
..|.++++||||||||+|+++|.++|++|+||++| |.||. ++..||..
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli--D~D~~~~~~~~~lg~~ 52 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI--DADIGLRNLDLLLGLE 52 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE--ECCCCCCCeeEEeCCC
Confidence 35777888999999999999999999999999999 99984 55566653
No 37
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.60 E-value=1.1e-14 Score=146.86 Aligned_cols=50 Identities=32% Similarity=0.450 Sum_probs=42.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
.+..|.++++||||||||+|+++|.++|++|+||+|| |+||. ++..||.+
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv--D~D~~~~~~~~~lg~~ 144 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV--DADPWGGGLDLLLGAE 144 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE--ecCCCCCCeeeeecCC
Confidence 3456777778999999999999999999999999999 99985 34456654
No 38
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.59 E-value=4.3e-14 Score=146.23 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=44.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCK 98 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~ 98 (449)
+++..|.+++.||||||||+|+++|.++|++|+||||| |+|| +++..||..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI--D~DpQ~~ls~~~g~~ 154 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI--DLDPQASLSALFGYQ 154 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE--ecCCCCCHHHHcCCC
Confidence 45567778889999999999999999999999999999 9998 477777753
No 39
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.58 E-value=3.8e-14 Score=146.48 Aligned_cols=51 Identities=31% Similarity=0.290 Sum_probs=43.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCC-Ccc--hhhhhhhc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQ-DPT--AEYILNCK 98 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~-Dps--l~d~~g~~ 98 (449)
.....|.+++.||||||||+|+++|.++|.+|+||||| |+ ||. ++..||..
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI--D~~DpQ~nlt~~~g~~ 157 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV--EGNDPQGTASMYHGWV 157 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE--cCCCCCCchhhhcCcC
Confidence 44566778889999999999999999999999999999 96 993 67777653
No 40
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.57 E-value=5.7e-14 Score=135.41 Aligned_cols=47 Identities=26% Similarity=0.184 Sum_probs=40.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
|+.|.+++.||||||||+|+++|.++|++|+||++| |+||. +...++
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli--D~DpQ~s~~~w~~ 49 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF--EADENRPLTRWKE 49 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE--eCCCCCCHHHHHH
Confidence 457888889999999999999999999999999999 99994 444443
No 41
>PHA02518 ParA-like protein; Provisional
Probab=99.56 E-value=7.4e-14 Score=131.41 Aligned_cols=45 Identities=31% Similarity=0.348 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
.|.+++.||||||||+|+++|.++|++|+||++| |+||. +...++
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli--D~D~q~~~~~~~~ 48 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV--DLDPQGSSTDWAE 48 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE--eCCCCCChHHHHH
Confidence 5788889999999999999999999999999999 99984 444443
No 42
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.55 E-value=5.3e-14 Score=130.35 Aligned_cols=38 Identities=42% Similarity=0.500 Sum_probs=35.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|.+.++||||||||+|+++|.++|++|+|||++ |+||.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~Vlli--D~D~~ 38 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLI--DLDPQ 38 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE--EESTT
T ss_pred CEEEcCCCCccHHHHHHHHHhcccccccccccc--ccCcc
Confidence 678999999999999999999999999999999 99884
No 43
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.55 E-value=1.4e-13 Score=138.93 Aligned_cols=50 Identities=30% Similarity=0.449 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
+..+++.++||||+||||+|+++|.++|++|+||++| |+||. ++.+||..
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli--d~D~~~~~~~~~~g~~ 81 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI--GCDPKSDTTSLLFGGK 81 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--Eeeecccccchhcccc
Confidence 4578999999999999999999999999999999999 99974 67778754
No 44
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.54 E-value=9.8e-14 Score=138.59 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=34.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+|.|.|||||||||+|+++|.++|++|+||||| |+||.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI--D~Dpq 39 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL--GCDPK 39 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--EecCC
Confidence 444449999999999999999999999999999 99994
No 45
>PRK11519 tyrosine kinase; Provisional
Probab=99.54 E-value=8.3e-14 Score=154.68 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=112.0
Q ss_pred cEEEEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhh
Q 013114 49 TTLITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEP 124 (449)
Q Consensus 49 ~rii~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~ 124 (449)
.+++++++ +||+||||+|+++|..+|+.|+||||| |+|+ +++..||.+... +|...-.+. . .
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI--D~Dlr~~~~~~~~~~~~~~-------gl~~~l~~~-~----~ 591 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI--DCDMRKGYTHELLGTNNVN-------GLSDILIGQ-G----D 591 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE--eCCCCCCcHHHHhCCCCCC-------CHHHHhCCC-C----C
Confidence 46666666 999999999999999999999999999 9996 478888865322 221111110 0 1
Q ss_pred HHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhh
Q 013114 125 LNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGV 204 (449)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~l 204 (449)
|++.-. .. ....+.-+..+.. .|...+++....+.++++.++ .+||+|||||||....
T Consensus 592 l~~~i~---~~--~~~~l~~lp~g~~--~~~~~ell~s~~~~~ll~~l~---------~~yD~ViiDtpP~~~v------ 649 (719)
T PRK11519 592 ITTAAK---PT--SIANFDLIPRGQV--PPNPSELLMSERFAELVNWAS---------KNYDLVLIDTPPILAV------ 649 (719)
T ss_pred HHHhec---cc--CcCCEEEEeCCCC--CCCHHHHhhHHHHHHHHHHHH---------hcCCEEEEeCCCcccc------
Confidence 211100 00 0011121222222 344457777888888888764 4799999999998741
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 013114 205 SSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVM 284 (449)
Q Consensus 205 P~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt 284 (449)
++.. +++ -+.| .+.+|+
T Consensus 650 ~Da~------------------~l~-----------------------------------------~~~d----~~l~Vv 666 (719)
T PRK11519 650 TDAA------------------IVG-----------------------------------------RHVG----TTLMVA 666 (719)
T ss_pred hHHH------------------HHH-----------------------------------------HHCC----eEEEEE
Confidence 1100 000 0234 678999
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 285 NPNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 285 ~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
.+. .....+...+...+...|.++.|+|+|.
T Consensus 667 r~~-~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 697 (719)
T PRK11519 667 RYA-VNTLKEVETSLSRFEQNGIPVKGVILNS 697 (719)
T ss_pred eCC-CCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 998 6999999999999999999999999994
No 46
>PRK10037 cell division protein; Provisional
Probab=99.53 E-value=5.3e-14 Score=136.95 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=43.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
|+.|.+++.||||||||+|+++|..+|++|+||||| |+||. ++..||.+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI--D~D~q~~~s~~~g~~ 51 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI--DACPDNLLRLSFNVD 51 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE--eCChhhhHHHHhCCC
Confidence 567889999999999999999999999999999999 99995 67777764
No 47
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.53 E-value=2e-14 Score=148.46 Aligned_cols=52 Identities=35% Similarity=0.410 Sum_probs=44.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCC-Cc--chhhhhhhc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQ-DP--TAEYILNCK 98 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~-Dp--sl~d~~g~~ 98 (449)
+.++..|.+++.||||||||+|+++|.++|.+|+|||+| |+ || +++..||..
T Consensus 103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI--Dl~DpQ~nlt~~~g~~ 157 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI--EGNDPQGTASMYHGYV 157 (387)
T ss_pred CCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE--eCCCCCCCcccccCcC
Confidence 344567788899999999999999999999999999999 96 99 366677753
No 48
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.53 E-value=6.4e-14 Score=136.72 Aligned_cols=49 Identities=33% Similarity=0.352 Sum_probs=42.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCcc--hhhhhhhc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
|+.|.+++-||||||||+|.++|.++| ..|+||||| |.||. ++..||..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLli--DlDpQ~s~t~~~~~~ 53 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLI--DLDPQGSLTSWLGLR 53 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEE--eCCCcchhhHhcCCC
Confidence 467888889999999999999999999 567999999 99994 67777765
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.52 E-value=1.6e-13 Score=153.47 Aligned_cols=169 Identities=18% Similarity=0.047 Sum_probs=107.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
..|.+.+.|||+||||+|+++|..+|+.|+||||| |+|+ +++..||.....+..++ |.. +. .|
T Consensus 547 kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI--D~D~~~~~l~~~~~~~~~~gl~~~---l~~-~~--------~~ 612 (754)
T TIGR01005 547 EVVETQRPRPVLGKSDIEANAAALIASGGKRALLI--DADGRKAALSQILVAREVSGLLDL---LAG-LR--------SL 612 (754)
T ss_pred eEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE--eCCCCchhHHHHhCCcccCChHHH---HcC-Cc--------cH
Confidence 34556667999999999999999999999999999 9996 47888886422211111 100 00 11
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
++... . .....+.-+.+.. ..++..+++....+.++++.++ ++||+|||||||........
T Consensus 613 ~~~i~---~--~~~~~l~~l~~g~--~~~~~~~ll~~~~~~~~l~~l~---------~~yD~IiID~pp~~~~~d~~--- 673 (754)
T TIGR01005 613 LLDLT---A--SGAASLPMLDSGL--FPHGITELLASPAMFSLVIHAR---------LYSDCVVVDVGTADPVRDMR--- 673 (754)
T ss_pred HHHhc---c--CCCCCeeEecCCC--CCCCHHHHhccHHHHHHHHHHH---------hhCCEEEEcCCCcchhHHHH---
Confidence 11100 0 0001111111221 1234445555556666666553 57999999999987621000
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEec
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMN 285 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~ 285 (449)
.+. .+.| .+.+|+.
T Consensus 674 ---------------------~l~-----------------------------------------~~~D----~vl~v~~ 687 (754)
T TIGR01005 674 ---------------------AAA-----------------------------------------RLAI----IMLLVTA 687 (754)
T ss_pred ---------------------Hhh-----------------------------------------hhCC----eEEEEEE
Confidence 000 0223 5679999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCcccEEEEecC
Q 013114 286 PNNRTSVNSALRYWGCTIQAGAQVAGAICTAS 317 (449)
Q Consensus 286 PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~ 317 (449)
++ ..+.....+++..++..|.++.|+|+|+.
T Consensus 688 ~~-~~~~~~~~~~~~~l~~~~~~~~GvvlN~~ 718 (754)
T TIGR01005 688 YD-RVVVECGRADAQGISRLNGEVTGVFLNML 718 (754)
T ss_pred eC-ceeHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 98 69999999999999999999999999953
No 50
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.49 E-value=3.1e-13 Score=132.44 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=42.8
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc-cccHHHHHHHHHhcCCCCeeeccC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP-HLDEESAERVRKNFSPLPLSFLPH 342 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~-~~q~~~l~~i~~~F~~lpi~~vP~ 342 (449)
.+++|++|+ ..++..+.++...++..+-+..++++|+.. ..+...++++.+.|+...+..||.
T Consensus 141 ~vlip~~p~-~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~vl~~I~~ 204 (264)
T PRK13231 141 EVYIVTSGE-YMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVSEFASRIGSRIIGVIPR 204 (264)
T ss_pred eeEEEecCc-hhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHHHHHHHhCCCeEEeCCC
Confidence 788899998 799999988888888777666777777432 123345666777665433344444
No 51
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.49 E-value=3.1e-13 Score=150.32 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=109.2
Q ss_pred cEEEEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhh
Q 013114 49 TTLITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEP 124 (449)
Q Consensus 49 ~rii~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~ 124 (449)
.+++++++ +||+||||+|+++|.++|+.|+||||| |+|+ .++..|+..... +|..+-.+ .. .
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI--D~D~r~~~l~~~~~~~~~~-------gl~~~l~~-~~----~ 596 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI--DADLRRGYSHNLFTVSNEH-------GLSEYLAG-KD----E 596 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE--eCCCCCCcHHHHcCCCCCC-------CHHHHhCC-CC----C
Confidence 46666665 889999999999999999999999999 9997 477777764222 22111101 00 1
Q ss_pred HHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhh
Q 013114 125 LNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGV 204 (449)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~l 204 (449)
|++.-. .. ....++-+..... .|...+++....+.++++.++ .+||+|||||||....
T Consensus 597 ~~~~i~---~~--~~~~l~vl~~g~~--~~~p~ell~~~~~~~ll~~l~---------~~yD~IIIDtPP~~~~------ 654 (726)
T PRK09841 597 LNKVIQ---HF--GKGGFDVITRGQV--PPNPSELLMRDRMRQLLEWAN---------DHYDLVIVDTPPMLAV------ 654 (726)
T ss_pred HHHhee---cc--CCCCEEEEeCCCC--CCCHHHHhCcHHHHHHHHHHH---------hcCCEEEEeCCCcccc------
Confidence 111100 00 0011122222222 233447776677777777664 4799999999997651
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 013114 205 SSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVM 284 (449)
Q Consensus 205 P~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt 284 (449)
++.. + + ..+.| .+++|+
T Consensus 655 ~Da~------------------~------------------------------l-----------a~~ad----~~llVv 671 (726)
T PRK09841 655 SDAA------------------V------------------------------V-----------GRSVG----TSLLVA 671 (726)
T ss_pred chHH------------------H------------------------------H-----------HHhCC----eEEEEE
Confidence 1100 0 0 01224 668999
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 285 NPNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 285 ~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
.+. .....+..+....|...|.++.|+|+|.
T Consensus 672 r~~-~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 702 (726)
T PRK09841 672 RFG-LNTAKEVSLSMQRLEQAGVNIKGAILNG 702 (726)
T ss_pred eCC-CCCHHHHHHHHHHHHhCCCceEEEEEeC
Confidence 998 6999999999999999999999999994
No 52
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.42 E-value=4.6e-13 Score=128.28 Aligned_cols=46 Identities=33% Similarity=0.322 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhh
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNC 97 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~ 97 (449)
.|++.+|||||||||+|+++|.+||.+|+||.++ |+|. ++...++.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l--D~Di~q~S~~r~l~n 50 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL--DLDIRQPSLPRYLEN 50 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE--E--TTT-HHHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE--ecCCCCCCHHHHHhc
Confidence 5788899999999999999999999999999999 8875 56666654
No 53
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.41 E-value=1.6e-11 Score=116.35 Aligned_cols=48 Identities=31% Similarity=0.409 Sum_probs=41.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcC-CceEEEecCCCc--chhhhhhhccC
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAG-LSTCLVLHSQDP--TAEYILNCKIG 100 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G-~rvLLv~~d~Dp--sl~d~~g~~~~ 100 (449)
.|.++|||||||||+|+.+|..+.++| ++||+| |+|| +|+..||++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV--DaDpd~nL~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV--DADPDSNLPEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE--eCCCCCChHHhcCCCCC
Confidence 467899999999999999888888875 999999 7777 59999998854
No 54
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.37 E-value=2.7e-12 Score=123.83 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=47.0
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccHHHHHHHHHhcCCCCeeeccCCC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
.+++||-|. +.++.+.+|+++.++.+|++. ++|+|+...... -+++..+.-.--.+.++|+..
T Consensus 188 ~ai~VTEPT-p~glhD~kr~~el~~~f~ip~-~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 188 LAILVTEPT-PFGLHDLKRALELVEHFGIPT-GIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred EEEEEecCC-ccchhHHHHHHHHHHHhCCce-EEEEecCCCCch-HHHHHHHHcCCCeeEECCcch
Confidence 789999999 899999999999999999998 899997521112 244444454334456888744
No 55
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.36 E-value=8.3e-12 Score=105.90 Aligned_cols=38 Identities=34% Similarity=0.283 Sum_probs=35.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dps 90 (449)
|.+.++|||+||||+|.++|.++++. |++|+|+ |+||.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~--d~d~~ 40 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLV--DLDLQ 40 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEE--ECCCC
Confidence 56778999999999999999999998 9999999 98885
No 56
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.35 E-value=9.5e-13 Score=127.00 Aligned_cols=51 Identities=25% Similarity=0.245 Sum_probs=45.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhccC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCKIG 100 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~~~ 100 (449)
|++|.+.+-||||||||++||+|..|++.|++||+| |.||. |.-.||.+..
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaI--D~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAI--DLDPQNLLRLHFGLPLD 53 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEE--eCCcHHHHHHhcCCCCc
Confidence 567777778999999999999999999999999999 99994 8888998753
No 57
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.35 E-value=1.1e-11 Score=104.11 Aligned_cols=38 Identities=39% Similarity=0.453 Sum_probs=35.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|.+.+.|||+||||+|+++|..++++|++|+++ |+||.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~--d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLI--DLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE--eCCCC
Confidence 567788999999999999999999999999999 88875
No 58
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.29 E-value=1.1e-10 Score=111.34 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=38.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|+.|.+.+.|||+||||.+.++|..+|++|.+|+|| |+||+
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI--DaDpn 41 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALI--DADPN 41 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE--eCCCC
Confidence 567889999999999999999999999999999999 99996
No 59
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.28 E-value=1e-11 Score=102.28 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=60.2
Q ss_pred cceEEec---CceEEEEEcCCCCCCceEEEeecCCCeEEEE-------------------ECCeeeeecCCcccccCccc
Q 013114 379 SSVKFDA---AKKSVTLLMPGFDKSEIKLYQYRGGSELLVE-------------------AGDQRRVIHLPPQIQGKVGG 436 (449)
Q Consensus 379 ~~~~i~~---~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~-------------------~g~~rR~i~LP~~L~~~~~~ 436 (449)
|+++|.+ +.|.+++.|||++|++|+|... |+.|+|+ .|+|+|+|.||..+.. .+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~--~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~--~~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE--NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKV--KG 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceE--Ce
Confidence 5778865 4899999999999999999996 9999999 6999999999997654 49
Q ss_pred eEEeCCEEEEEcC
Q 013114 437 ARFIERNLIVTMG 449 (449)
Q Consensus 437 A~~~~g~L~I~f~ 449 (449)
|+|+||+|+|+|+
T Consensus 77 A~~~~GvL~I~l~ 89 (90)
T cd06470 77 AELENGLLTIDLE 89 (90)
T ss_pred eEEeCCEEEEEEE
Confidence 9999999999985
No 60
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.24 E-value=1.3e-10 Score=103.20 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=34.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|.+.++|||+||||+|+++|..++++|++|+++ |.|+
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~v--d~D~ 38 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLL--DADL 38 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE--ECCC
Confidence 678889999999999999999999999999999 8886
No 61
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.21 E-value=6e-11 Score=105.17 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=62.0
Q ss_pred CcceEEec---CceEEEEEcCCCCCCceEEEeecCCCeEEEEE------------------CCeeeeecCCcccccCccc
Q 013114 378 MSSVKFDA---AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA------------------GDQRRVIHLPPQIQGKVGG 436 (449)
Q Consensus 378 ~~~~~i~~---~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~------------------g~~rR~i~LP~~L~~~~~~ 436 (449)
+||+++.+ +.|.+++.|||++|++|+|+.. ++.|+|++ |.|+|+|.||..+..+ +
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~--~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQ--DNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 48999973 4899999999999999999996 99999996 8999999999999876 4
Q ss_pred eEEeCCEEEEEcC
Q 013114 437 ARFIERNLIVTMG 449 (449)
Q Consensus 437 A~~~~g~L~I~f~ 449 (449)
|+|+||+|+|++|
T Consensus 110 A~~~dGVL~I~lP 122 (137)
T PRK10743 110 ANLVNGLLYIDLE 122 (137)
T ss_pred CEEeCCEEEEEEe
Confidence 9999999999986
No 62
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.20 E-value=2.9e-10 Score=110.13 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=56.4
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHc----CCcccEEEEec-CccccHHHHHHHHHhcCCCCeeeccCCCC--------
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQA----GAQVAGAICTA-SPHLDEESAERVRKNFSPLPLSFLPHLPT-------- 345 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~----Gi~V~~vvvN~-~~~~q~~~l~~i~~~F~~lpi~~vP~~~~-------- 345 (449)
.+++||.-| .||+.-|-.+...++.+ +.++.|+|+|. +...+...++++.+...-.-+..||+...
T Consensus 144 evyIVtSge-~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~ 222 (273)
T PF00142_consen 144 EVYIVTSGE-FMSLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYG 222 (273)
T ss_dssp EEEEEEBSS-HHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEEEE---HHHHHHHHCT
T ss_pred EEEEEecCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEEecCchHHHHHHHHcC
Confidence 889999999 79999999888888766 46899999994 33344556677777765556666775431
Q ss_pred ----CCccchhhhhccccHHHHHHHhc
Q 013114 346 ----DSSLDWNTIMLNPAGKEARDLLS 368 (449)
Q Consensus 346 ----e~~~~~~~~g~~~L~~la~~lf~ 368 (449)
|.-.++ .--...++||+.++.
T Consensus 223 ~TVie~~P~s--~~a~~yr~LA~~I~~ 247 (273)
T PF00142_consen 223 KTVIEAAPDS--EQAQEYRELARKILE 247 (273)
T ss_dssp S-CCCC-TTS--HHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCc--HHHHHHHHHHHHHHh
Confidence 100111 112466788888874
No 63
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.19 E-value=1e-10 Score=104.20 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=62.9
Q ss_pred CCcceEEec--C-ceEEEEEcCCCCCCceEEEeecCCCeEEEEE------------------CCeeeeecCCcccccCcc
Q 013114 377 LMSSVKFDA--A-KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA------------------GDQRRVIHLPPQIQGKVG 435 (449)
Q Consensus 377 ~~~~~~i~~--~-~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~------------------g~~rR~i~LP~~L~~~~~ 435 (449)
.+|+++|.+ + .|.+++.|||++|++|+|+.. ++.|+|++ |.|+|+|.||..+...
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~--~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE--GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE--CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 458999986 2 799999999999999999996 99999996 8999999999998776
Q ss_pred ceEEeCCEEEEEcC
Q 013114 436 GARFIERNLIVTMG 449 (449)
Q Consensus 436 ~A~~~~g~L~I~f~ 449 (449)
+|+|+||+|+|++|
T Consensus 107 ~A~~~nGVL~I~lP 120 (142)
T PRK11597 107 GATFVNGLLHIDLI 120 (142)
T ss_pred cCEEcCCEEEEEEe
Confidence 79999999999986
No 64
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8.1e-11 Score=105.65 Aligned_cols=71 Identities=25% Similarity=0.430 Sum_probs=66.5
Q ss_pred CCcceEEecC--ceEEEEEcCCCCCCceEEEeecCCCeEEEEE--------------------CCeeeeecCCcccccCc
Q 013114 377 LMSSVKFDAA--KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA--------------------GDQRRVIHLPPQIQGKV 434 (449)
Q Consensus 377 ~~~~~~i~~~--~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~--------------------g~~rR~i~LP~~L~~~~ 434 (449)
..|+++|.+. .|++.+.|||++|++|+|+.. ++.|+|++ |.|+|.|.||..+..+.
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~--~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVE--GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE--CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 5699999984 899999999999999999996 99999995 89999999999999989
Q ss_pred cceEEeCCEEEEEcC
Q 013114 435 GGARFIERNLIVTMG 449 (449)
Q Consensus 435 ~~A~~~~g~L~I~f~ 449 (449)
++|+|+||.|+|++|
T Consensus 117 ~~A~~~nGvL~I~lp 131 (146)
T COG0071 117 IKAKYKNGLLTVTLP 131 (146)
T ss_pred eeeEeeCcEEEEEEe
Confidence 999999999999986
No 65
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.16 E-value=2.8e-09 Score=105.29 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++++|++|+||||+++++|.++++.|+||+|+ |+|+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li--~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA--AGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE--eCCC
Confidence 368999999999999999999999999999999999 8887
No 66
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.16 E-value=9.2e-11 Score=97.01 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=58.9
Q ss_pred ceEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEE----------------------ECCeeeeecCCcccccCcc
Q 013114 380 SVKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVE----------------------AGDQRRVIHLPPQIQGKVG 435 (449)
Q Consensus 380 ~~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~----------------------~g~~rR~i~LP~~L~~~~~ 435 (449)
.+++.+ +.|.+.+.|||+++++|+|... ++.|+|+ .|+|+|.|.||. +..+.+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~--~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp~-v~~~~i 78 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYK--DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLPN-VDEEEI 78 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECCC-CCHHHC
Confidence 466766 4899999999999999999996 9999993 478999999994 566679
Q ss_pred ceEEeCCEEEEEcC
Q 013114 436 GARFIERNLIVTMG 449 (449)
Q Consensus 436 ~A~~~~g~L~I~f~ 449 (449)
.|+|+||+|+|++|
T Consensus 79 ~A~~~dGvL~I~lP 92 (93)
T cd06471 79 KAKYENGVLKITLP 92 (93)
T ss_pred EEEEECCEEEEEEc
Confidence 99999999999987
No 67
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.08 E-value=3.7e-10 Score=93.29 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=59.6
Q ss_pred eEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEEE--------------------CCeeeeecCCcccccCccceE
Q 013114 381 VKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA--------------------GDQRRVIHLPPQIQGKVGGAR 438 (449)
Q Consensus 381 ~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~--------------------g~~rR~i~LP~~L~~~~~~A~ 438 (449)
+++.+ +.|.+.+.|||++|++|+|... .++.|+|++ |.|.|.|.||..+..+.+.|+
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~-~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVE-DGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEe-CCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 45555 4899999999999999999984 234799985 799999999999988888999
Q ss_pred EeCCEEEEEcC
Q 013114 439 FIERNLIVTMG 449 (449)
Q Consensus 439 ~~~g~L~I~f~ 449 (449)
|+||.|+|++|
T Consensus 81 ~~nGvL~I~lP 91 (92)
T cd06472 81 LENGVLTVTVP 91 (92)
T ss_pred EECCEEEEEec
Confidence 99999999987
No 68
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.1e-09 Score=101.69 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=48.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHH----HHcCCcccEEEEecCc-cccHHHHHHHHHhcCCCCeeeccCCC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCT----IQAGAQVAGAICTASP-HLDEESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L----~~~Gi~V~~vvvN~~~-~~q~~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
.+++||.-| .|++.-|-.....+ ...|+++.|+|+|... ..+...++++.+...-.-|..||+.+
T Consensus 145 eiyIVtSge-~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li~~vPr~~ 214 (278)
T COG1348 145 EIYIVTSGE-MMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVPRDN 214 (278)
T ss_pred EEEEEecCc-hHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceEeeccchH
Confidence 789999999 79999877766644 4456889999999644 33455677777777777777788644
No 69
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.04 E-value=4e-10 Score=101.13 Aligned_cols=48 Identities=31% Similarity=0.312 Sum_probs=36.7
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhcc
Q 013114 50 TLITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCKI 99 (449)
Q Consensus 50 rii~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~~ 99 (449)
|++.|.| +||+||||+|.++|..+|+.|++||+| |+|.. +...++.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vlli--d~~~~~~~~~~~~~~~~ 52 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLI--DFDFFSPSLSRLLGIEP 52 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEE--E--SSS-HHHHHTTSSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEE--ECCCCCCCccccccccc
Confidence 3445554 999999999999999999999999999 88863 667777653
No 70
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.03 E-value=7.6e-10 Score=95.54 Aligned_cols=44 Identities=36% Similarity=0.458 Sum_probs=38.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc-chhhhhhh
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP-TAEYILNC 97 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp-sl~d~~g~ 97 (449)
++++||||+||||++.++|.+++++|++|+++ |+|| ++...++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i--d~D~~~~~~~~~~ 46 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI--DADPDDLPERLSV 46 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--ECCchhhHHHHhh
Confidence 68899999999999999999999999999999 9998 34444443
No 71
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.03 E-value=5.4e-10 Score=91.34 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEEe-CCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARFI-ERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~~-~g~L~I~f~ 449 (449)
+.|.+.+.|||++|++|+|... ++.|+|++ +.|+|+|.||..+....+.|+|+ ||.|+|++|
T Consensus 10 ~~~~v~~dlPG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 10 DRWKVSLDVNHFAPEELVVKTK--DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAP 85 (86)
T ss_pred CeEEEEEECCCCCHHHEEEEEE--CCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEec
Confidence 4899999999999999999996 99999996 66999999999999999999997 999999987
No 72
>PRK10867 signal recognition particle protein; Provisional
Probab=99.03 E-value=1.9e-08 Score=105.28 Aligned_cols=40 Identities=33% Similarity=0.333 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
.+++++++|++|+||||+++.+|.+++++ |++|++| |+|+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV--~~D~ 139 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV--AADV 139 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE--Eccc
Confidence 46899999999999999999999999998 9999999 8886
No 73
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.03 E-value=5.5e-10 Score=91.47 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-----------------CCeeeeecCCcccccCccceEE-eCCEEEEE
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-----------------GDQRRVIHLPPQIQGKVGGARF-IERNLIVT 447 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-----------------g~~rR~i~LP~~L~~~~~~A~~-~~g~L~I~ 447 (449)
+.|.+.+.|||+++++|+|... ++.|+|++ |.|+|.|.||..+..+.+.|.| +||+|+|+
T Consensus 7 d~~~v~~dlpG~~~edI~V~v~--~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 7 EGFSLKLDVRGFSPEDLSVRVD--GRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ceEEEEEECCCCChHHeEEEEE--CCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 4899999999999999999996 99999985 7899999999999999999999 99999999
Q ss_pred cC
Q 013114 448 MG 449 (449)
Q Consensus 448 f~ 449 (449)
+|
T Consensus 85 ~P 86 (87)
T cd06481 85 AP 86 (87)
T ss_pred cC
Confidence 87
No 74
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.03 E-value=5.9e-10 Score=90.69 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=59.6
Q ss_pred EEecCceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEEe-CCEEEEE
Q 013114 382 KFDAAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARFI-ERNLIVT 447 (449)
Q Consensus 382 ~i~~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~~-~g~L~I~ 447 (449)
...++.|.+++.|||++|++|+|... |+.|+|++ +.|+|.|.||..+..+.+.|+|+ ||+|+|+
T Consensus 3 ~~~~~~~~v~~dlpG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 3 RLEKDKFSVNLDVKHFSPEELKVKVL--GDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred EeCCceEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 34456999999999999999999996 99999997 33999999999999999999995 9999999
Q ss_pred cC
Q 013114 448 MG 449 (449)
Q Consensus 448 f~ 449 (449)
+|
T Consensus 81 lP 82 (84)
T cd06498 81 GP 82 (84)
T ss_pred Ee
Confidence 86
No 75
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.00 E-value=7.6e-10 Score=89.81 Aligned_cols=63 Identities=22% Similarity=0.169 Sum_probs=58.7
Q ss_pred cCceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEEe-CCEEEEEcC
Q 013114 385 AAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARFI-ERNLIVTMG 449 (449)
Q Consensus 385 ~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~~-~g~L~I~f~ 449 (449)
++.|.+.+.|||+++++|+|... ++.|+|++ +.|+|+|.||..+....+.|+|+ ||.|+|++|
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~P 82 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTV--DNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEE--CCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEec
Confidence 35899999999999999999996 99999986 77999999999999999999996 999999987
No 76
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=98.98 E-value=8.8e-10 Score=88.97 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE----------CCeeeeecCCcccccCccceEE-eCCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA----------GDQRRVIHLPPQIQGKVGGARF-IERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~----------g~~rR~i~LP~~L~~~~~~A~~-~~g~L~I~f~ 449 (449)
+.|.+.+.|||++|++|+|+.. ++.|+|++ |.|.|.|.||..+..+.+.|+| +||.|+|+++
T Consensus 8 ~~~~v~~dlpG~~pedi~V~v~--~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 8 DTYQFAVDVSDFSPEDIIVTTS--NNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CeEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 4899999999999999999996 99999996 8999999999999999999997 9999999874
No 77
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.98 E-value=5.2e-08 Score=98.38 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|++|+||||+++++|..++..|++|+|+ ++|+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li--~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA--AGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE--ecCc
Confidence 368999999999999999999999999999999999 8887
No 78
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=98.97 E-value=1.3e-09 Score=89.01 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEE-eCCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARF-IERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~-~~g~L~I~f~ 449 (449)
+.|.+.+.|||+++++|+|+.. ++.|+|++ ..|+|+|.||..+..+.+.|+| +||.|+|++|
T Consensus 10 ~~~~v~~dlpG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 10 DKFTIYLDVKHFSPEDLTVKVL--DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred CEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 5899999999999999999996 99999996 2399999999999999999999 8999999987
No 79
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=98.96 E-value=1.6e-09 Score=87.88 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=58.2
Q ss_pred ecCceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEE-eCCEEEEEcC
Q 013114 384 DAAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARF-IERNLIVTMG 449 (449)
Q Consensus 384 ~~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~-~~g~L~I~f~ 449 (449)
+++.|.+.+.|||++|++|+|... ++.|+|++ ..|+|.|.||..+....+.|+| +||.|+|++|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~--~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 5 DKDRFSVNLDVKHFSPEELSVKVL--GDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred cCceEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 346999999999999999999996 99999987 2399999999999999899999 7999999987
No 80
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.94 E-value=6.6e-08 Score=101.10 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
.+.+++++|..|+||||+|+++|.+++ +.|++|++| |+|+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV--~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV--ACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE--eccc
Confidence 468999999999999999999999987 589999999 8886
No 81
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.92 E-value=2.6e-09 Score=87.39 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=58.2
Q ss_pred cCceEEEEEcCCCCCCceEEEeecCCCeEEEEE----------------CCeeeeecCCcccccCccceEEeCC-EEEEE
Q 013114 385 AAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA----------------GDQRRVIHLPPQIQGKVGGARFIER-NLIVT 447 (449)
Q Consensus 385 ~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~----------------g~~rR~i~LP~~L~~~~~~A~~~~g-~L~I~ 447 (449)
.+.|.+++.|||++|++|+|+.. ++.|+|++ |.|+|.|.||..+..+.+.|+|+|| +|+|.
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~--~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVK--DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 35899999999999999999996 99999996 8999999999999999999999998 99996
Q ss_pred cC
Q 013114 448 MG 449 (449)
Q Consensus 448 f~ 449 (449)
=|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 43
No 82
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.90 E-value=3.4e-09 Score=85.97 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEE-eCCEEEEE
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARF-IERNLIVT 447 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~-~~g~L~I~ 447 (449)
+.|.+++.|||++|++|+|... ++.|+|++ +.|+|+|.||..+....+.|+| +||+|+|+
T Consensus 7 ~~~~v~~dlpG~~~edI~V~v~--~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 7 PMFQILLDVVQFRPEDIIIQVF--EGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred ceEEEEEEcCCCCHHHeEEEEE--CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 4899999999999999999996 99999996 6899999999999999999998 89999997
No 83
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.89 E-value=4e-09 Score=85.27 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEE-------------------ECCeeeeecCCcccccCccceEEeCCEEEE
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVE-------------------AGDQRRVIHLPPQIQGKVGGARFIERNLIV 446 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~-------------------~g~~rR~i~LP~~L~~~~~~A~~~~g~L~I 446 (449)
+.|.+.+.|||+++++|+|... ++.|.|+ .|.|+|.|.||..+....+.|.|+||.|+|
T Consensus 7 ~~~~i~~~lpg~~~~~i~V~v~--~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I 84 (88)
T cd06464 7 DAYVVEADLPGFKKEDIKVEVE--DGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENGVLTI 84 (88)
T ss_pred CEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCCEEEE
Confidence 4899999999999999999996 8999999 699999999999999999999999999999
Q ss_pred EcC
Q 013114 447 TMG 449 (449)
Q Consensus 447 ~f~ 449 (449)
++|
T Consensus 85 ~~p 87 (88)
T cd06464 85 TLP 87 (88)
T ss_pred EEc
Confidence 986
No 84
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.86 E-value=9.8e-08 Score=99.48 Aligned_cols=40 Identities=40% Similarity=0.630 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.++++++.|..|+||||+++.+|.+++++|+||+|| ++|+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV--~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV--CADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cCcc
Confidence 368999999999999999999999999999999999 8887
No 85
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.85 E-value=5e-09 Score=84.89 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEEeC-CEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARFIE-RNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~~~-g~L~I~f~ 449 (449)
+.|.+.+.|||+++++|+|... ++.|+|++ |.|+|.|.||..+..+.+.|+|.+ |.|+|++|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~--~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVS--DNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEE--CCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 3899999999999999999996 99999996 699999999999999999999998 99999986
No 86
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.85 E-value=2.1e-07 Score=85.23 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=35.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+++++|+.|+||||++.++|..+++.|++|+++ |+|+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i--~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV--AADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--EcCC
Confidence 678999999999999999999999999999999 8886
No 87
>PRK13768 GTPase; Provisional
Probab=98.81 E-value=3.6e-08 Score=96.41 Aligned_cols=41 Identities=32% Similarity=0.488 Sum_probs=39.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|+.+++++|+||+||||++.+++.+++++|++|+++ |.||+
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i--~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV--NLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE--ECCCc
Confidence 578999999999999999999999999999999999 99986
No 88
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.81 E-value=1.6e-08 Score=97.80 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=38.8
Q ss_pred cEEE-EEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhh
Q 013114 49 TTLI-TFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNC 97 (449)
Q Consensus 49 ~rii-~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~ 97 (449)
++|+ +.+|||||||||+|+++|.+++++|++|+++ |+||.-++..+.
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~i--D~D~~n~~~~~~ 49 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCI--DTDPVNATFEGY 49 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ECCCCCchhhhH
Confidence 4444 5558999999999999999999999999999 999964444443
No 89
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.80 E-value=7e-08 Score=87.82 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.6
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEe
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICT 315 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN 315 (449)
.+.+|+.+. .-.+.++......|+..|+++-|+|+|
T Consensus 131 ~vilV~~~~-~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 131 PVILVVRVK-LGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CEEEEECCC-CcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 579999998 688999999999999999999999998
No 90
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.79 E-value=7.4e-08 Score=78.09 Aligned_cols=33 Identities=42% Similarity=0.498 Sum_probs=31.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++++||+|+||||+++++|..+++.|++|+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478899999999999999999999999999999
No 91
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.79 E-value=1.9e-07 Score=97.88 Aligned_cols=40 Identities=38% Similarity=0.493 Sum_probs=37.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.++++.|..|+||||+++.+|.++++.|++|++| ++|+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV--~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV--AADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe--cCCC
Confidence 468999999999999999999999999999999999 8875
No 92
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.78 E-value=1.7e-07 Score=96.13 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=36.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++.+.|.+|+||||+++.+|..++.+|++|+++ ++|+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI--~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI--TTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE--ecCC
Confidence 58899999999999999999999999999999999 8887
No 93
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=98.76 E-value=2.3e-08 Score=83.82 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE------------------CCeeeeecCCcccccCccceEEeCCEEEEE
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA------------------GDQRRVIHLPPQIQGKVGGARFIERNLIVT 447 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~------------------g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~ 447 (449)
+.|.+.+.|||+++++|+|... ++.|+|++ |+|.|.|.||..+....+.|+|+||.|+|+
T Consensus 7 ~~~~i~~~lpG~~~edi~I~~~--~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~ 84 (102)
T PF00011_consen 7 DEYIIKVDLPGFDKEDIKIKVD--DNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGVLTIT 84 (102)
T ss_dssp SEEEEEEE-TTS-GGGEEEEEE--TTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSEEEEE
T ss_pred CEEEEEEECCCCChHHEEEEEe--cCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCEEEEE
Confidence 5899999999999999999996 99999995 689999999999988999999999999999
Q ss_pred cC
Q 013114 448 MG 449 (449)
Q Consensus 448 f~ 449 (449)
+|
T Consensus 85 ~p 86 (102)
T PF00011_consen 85 IP 86 (102)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 94
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.75 E-value=3.2e-07 Score=86.38 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=33.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++++++.|..||||||+++-+|.++..+|++|.++ ++|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li--s~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI--SADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee--cCCC
Confidence 48999999999999999999999999999999999 5554
No 95
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.74 E-value=3.3e-08 Score=88.92 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=34.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+.+.||||+||||++.+++..+++.|.|++++ +.||+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii--~~D~~ 38 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVL--AIDPS 38 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE--EeCCC
Confidence 67889999999999999999999999999999 88874
No 96
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.64 E-value=6.6e-07 Score=85.34 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=50.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc----ccHHHHHHHHHhcCCCCee-eccCCCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH----LDEESAERVRKNFSPLPLS-FLPHLPT 345 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~----~q~~~l~~i~~~F~~lpi~-~vP~~~~ 345 (449)
+.+.+|+.++ .-++..+...+..++..|+++.++|+|+... ..+...+.+++.|. .|+. .+|++..
T Consensus 134 ~pvilV~~~~-~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~g-i~vlg~ip~~~~ 204 (222)
T PRK00090 134 LPVILVVGVK-LGCINHTLLTLEAIRARGLPLAGWVANGIPPEPGLRHAENLATLERLLP-APLLGELPYLAE 204 (222)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHHHHCCCCeEEEEEccCCCcchhHHHHHHHHHHHHcC-CCeEEecCCCCC
Confidence 4578999998 6889999999999999999999999995322 22346778888875 5544 6888754
No 97
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=2.8e-06 Score=87.10 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=37.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++.|..|+||||+++.+|.++.++|++|.++ ++|+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI--taDt 244 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI--TTDT 244 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--eCCc
Confidence 68999999999999999999999999999999999 8887
No 98
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=2.2e-06 Score=89.95 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA--MAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA--~~G~rvLLv~~d~Dp 89 (449)
.++++|.|++||||||+++.+|.+++ ..|++|++| ++|+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li--~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI--TLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE--ECCc
Confidence 46899999999999999999999998 468999999 8887
No 99
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.53 E-value=3.6e-06 Score=86.67 Aligned_cols=41 Identities=39% Similarity=0.432 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..+.+|++.|=-|.||||+|+-+|.++.++|+||+|| ++|.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllV--aaD~ 138 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLV--AADT 138 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEE--eccc
Confidence 3468999999999999999999999999999999999 7764
No 100
>PRK14974 cell division protein FtsY; Provisional
Probab=98.48 E-value=5.4e-06 Score=84.26 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=37.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++|+|..|+||||+++.+|.++.+.|++|+++ ++|+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li--~~Dt 178 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA--AGDT 178 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe--cCCc
Confidence 368999999999999999999999999999999999 8775
No 101
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.7e-06 Score=86.46 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..+-+++|.|-.||||||+-+-+|.++.++|++|++. -+|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla--A~D 176 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA--AGD 176 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE--ecc
Confidence 4478999999999999999999999999999999999 544
No 102
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=2.8e-06 Score=87.89 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=35.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH----cCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM----AGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~----~G~rvLLv~~d~Dp 89 (449)
..+++++.|+.||||||+++.+|.+++. .|++|+++ ++|+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~li--t~Dt 216 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKII--TIDN 216 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEE--eccC
Confidence 3589999999999999999999998874 58999999 7776
No 103
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=4.9e-06 Score=86.43 Aligned_cols=39 Identities=38% Similarity=0.508 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH-HHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY-AMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l-A~~G~rvLLv~~d~Dp 89 (449)
.+++++.|++|+||||+++.+|..+ ...|++|+++ ++|+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Li--t~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLY--TTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEe--cccc
Confidence 5789999999999999999999876 5789999999 8887
No 104
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.40 E-value=1.9e-06 Score=85.68 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-G-LSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-G-~rvLLv~~d~Dp 89 (449)
..++++|.|.+||||||+++.+|.+++.+ | ++|++| ++|+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li--~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALI--TTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEE--ECCc
Confidence 46899999999999999999999999986 5 999999 8876
No 105
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=2.7e-05 Score=82.97 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv~~d~Dp 89 (449)
.+++.+.|++|+||||+++++|..++.+ |++|.++ ++|+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLI--dtDt 390 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALV--TTDT 390 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEE--eccc
Confidence 5888999999999999999999998876 6899999 8876
No 106
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=98.29 E-value=1.1e-05 Score=81.99 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=47.7
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCccc--EEEEecC--ccccHHHHHHHHHhcCCCCeeeccCCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVA--GAICTAS--PHLDEESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~--~vvvN~~--~~~q~~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
..+++|+.|+ -++++.+++++..+...+.+-. -.|+|+- +...+ .+++.+.|.--++..+|.-+
T Consensus 241 d~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~--~~dl~~~~~i~~~~~~p~d~ 308 (366)
T COG4963 241 DEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE--PSDLEEILGIESLLVLPFDP 308 (366)
T ss_pred CeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC--HHHHHHHhCCchhccccCCc
Confidence 4899999998 8999999999999998887643 6777832 22223 56777777766777777654
No 107
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.27 E-value=2.2e-06 Score=70.63 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEEe-CCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARFI-ERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~~-~g~L~I~f~ 449 (449)
+.|.+.+.+.++.++||+|... |+.|+|++ +.|+|.+.||..+....+.|.+. ||.|+|..|
T Consensus 15 ~~f~v~ldv~gF~pEDL~Vkv~--~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 15 EPWKVCVNVHSFKPEELTVKTK--DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred CcEEEEEEeCCCCHHHcEEEEE--CCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 4899999999999999999996 99999986 78999999999999987777877 999999875
No 108
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.26 E-value=4.4e-06 Score=83.78 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
.+.++.++|++|+||||+..+++..+.++|++|.++ +.||.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i--~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI--AVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--ecCCC
Confidence 368888899999999999999999999999999999 88874
No 109
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=4.8e-05 Score=75.15 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=35.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...+.+.|++|+||||+...+|..+..+|+++.++ ++|+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i--~~D~ 113 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI--TTDH 113 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE--ecCC
Confidence 47889999999999999999999999889999999 8876
No 110
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.18 E-value=5.2e-05 Score=73.09 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=48.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcccc---HHHHHHHHHhcCCCCeeeccCCCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLD---EESAERVRKNFSPLPLSFLPHLPT 345 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q---~~~l~~i~~~F~~lpi~~vP~~~~ 345 (449)
..+.+|+... .-.+..+.-...++...|+.+.|+|+|+-+... ....+.+++.....++..+|+.+.
T Consensus 136 ~pvilV~~~~-lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~lg~iP~~~~ 205 (231)
T PRK12374 136 LPVLMVVGIQ-EGCINHALLTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPR 205 (231)
T ss_pred CCEEEEECCC-cChHHHHHHHHHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCEEEEeCCCCC
Confidence 5778898665 456899999999999999999999999643211 123456666655556778888654
No 111
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.13 E-value=5.9e-05 Score=66.57 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=44.5
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccH---HHHHHHHHhcCCCCee
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDE---ESAERVRKNFSPLPLS 338 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~---~~l~~i~~~F~~lpi~ 338 (449)
.+.+|++|+ .-++..+......++..|+.+.+++.|+....+. ..++.+.+.+ +.|+.
T Consensus 70 ~vllV~~~~-~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~~i~~~~-gip~L 130 (134)
T cd03109 70 PAILVTSAG-LGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVETIERLT-GIPVL 130 (134)
T ss_pred CEEEEEcCC-CCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHHHHHHhc-CCCEE
Confidence 579999999 6899999999999999999999999996432221 2366777665 34443
No 112
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.11 E-value=9.4e-06 Score=63.06 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEE------------ECCeeeeecCCcccccCccceEEeCCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVE------------AGDQRRVIHLPPQIQGKVGGARFIERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~------------~g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f~ 449 (449)
+.|.+++.+|++.++++++... ++.|.|+ .++|.+.+.||..+......|++.+|.|+|+++
T Consensus 6 ~~v~i~i~~~~~~~~~i~v~~~--~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 6 DEVVVTVDLPGVKKEDIKVEVE--DNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 4899999999999999999986 8999999 479999999999999999999999999999985
No 113
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=5.2e-05 Score=76.95 Aligned_cols=39 Identities=38% Similarity=0.544 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
.+.+|+|.|=-|+||||+++-+|.++.++|+|++|| -+|
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lv--caD 138 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALV--CAD 138 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEE--eec
Confidence 468999999999999999999999999999999999 554
No 114
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00015 Score=80.67 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=34.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAG-LSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G-~rvLLv~~d~Dp 89 (449)
.+|+.|.|..||||||+.+.+|..+. ..| ++|.++ ++|.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li--t~Dt 225 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL--TTDS 225 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe--cCcc
Confidence 58999999999999999999999885 566 699999 7775
No 115
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=97.94 E-value=2.2e-05 Score=63.13 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=33.5
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH 319 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~ 319 (449)
+.+++||||. .++..+++|....+++.++++-|+|.|++.+
T Consensus 26 ~g~ivVTTPq-~la~~dv~r~~~~~~~~~vpilGvVENMs~~ 66 (81)
T PF10609_consen 26 DGAIVVTTPQ-ELALADVRRAIDMFRKLNVPILGVVENMSYF 66 (81)
T ss_dssp SEEEEEE-CC-C--HHHHHHHHHHHHCTT-EEEEEEECT-EE
T ss_pred CeEEEEeCCH-HHHHHHHHHHHHHHHhcCCCcEEEEECCCcc
Confidence 5889999999 6999999999999999999999999998644
No 116
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=97.93 E-value=0.00029 Score=67.47 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=33.9
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
.-++||+... -=++.-|.-.+++++..|+++.|+|+|.
T Consensus 137 lpvILV~~~~-LGtINHtlLt~eal~~~gl~l~G~I~n~ 174 (223)
T COG0132 137 LPVILVVGIK-LGTINHTLLTVEALRARGLPLAGWVANG 174 (223)
T ss_pred CCEEEEecCC-ccHHHHHHHHHHHHHHCCCCEEEEEEcc
Confidence 3568888886 5789999999999999999999999994
No 117
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.92 E-value=0.00048 Score=73.01 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=31.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+++++.+.++|+||||++++++.+|+++|++|..+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~f 38 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPF 38 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCccee
Confidence 445666666899999999999999999999999988
No 118
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.85 E-value=0.00018 Score=74.16 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA--MAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA--~~G~rvLLv~~d~Dp 89 (449)
.+++.+.|..||||||+-|-||..++ ..-+||-+| ++|-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiI--TtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAII--TTDT 243 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEE--Eecc
Confidence 79999999999999999999999999 457899999 6653
No 119
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=97.79 E-value=9.5e-05 Score=58.61 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEECCeeeeecCCcccccCccceEEeCCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEAGDQRRVIHLPPQIQGKVGGARFIERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f~ 449 (449)
+.+.+++.+|++.++++++... ++-|.|++..|.+.+.||..+..+...|++++|.|.|+++
T Consensus 6 ~~v~i~i~~p~v~~~~v~v~~~--~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~ 67 (78)
T cd06469 6 EDVKISVPLKGVKTSKVDIFCS--DLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLV 67 (78)
T ss_pred CEEEEEEEeCCCccccceEEEe--cCEEEEcCCCEEEEEeCcccccccccEEEEeCCEEEEEEE
Confidence 4688999999999999999985 8889999999999999999999889999999999999874
No 120
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.66 E-value=0.00023 Score=72.31 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=37.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++-++|..|+||||+..+++..+.+.|++|.++ +.||+
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi--~~Dp~ 95 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVL--AVDPS 95 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--EeCCC
Confidence 57999999999999999999999999999999999 88985
No 121
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.62 E-value=0.00051 Score=60.74 Aligned_cols=39 Identities=36% Similarity=0.376 Sum_probs=34.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
++++.|+.|+||||++.+++..++..|.+|+.+ +.+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~--~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV--DIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE--ECCcch
Confidence 467899999999999999999999999999999 766543
No 122
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00039 Score=71.69 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=33.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cC-CceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-AG-LSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-~G-~rvLLv~~d~Dp 89 (449)
..++++.|..||||||+++.+|..+.. .| ++|.++ ++|.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li--t~D~ 177 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL--TTDS 177 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE--eccc
Confidence 579999999999999999999998764 47 699999 6664
No 123
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=97.57 E-value=0.0025 Score=59.70 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=45.5
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccHHHHHHHHHhcCCCCee-eccCCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNFSPLPLS-FLPHLP 344 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~~~l~~i~~~F~~lpi~-~vP~~~ 344 (449)
+.+++|+... .-++.++.-.++++...|+++-|+|+|+-... ..++.+++.+ ++|+. .||+.+
T Consensus 130 a~vIlV~~~~-~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~--~~~~~l~~~~-~i~vlg~iP~~~ 193 (199)
T PF13500_consen 130 APVILVASGR-LGTINHTLLTIEALKQRGIRVLGVILNRVPEP--ENLEALREKS-GIPVLGVIPEDP 193 (199)
T ss_dssp -EEEEEEESS-TTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC--HHHHHHHHHH-CCEECE---SST
T ss_pred CCEEEEeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHhC-CCCEEEECCCCc
Confidence 5789999998 58899999999999999999999999963211 4567777776 45554 567644
No 124
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.55 E-value=0.0034 Score=71.03 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=51.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccHHHHHHHHHhc-CCCCeeeccCCCCCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNF-SPLPLSFLPHLPTDS 347 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~~~l~~i~~~F-~~lpi~~vP~~~~e~ 347 (449)
.-++||+.+. -=.|+-|.-++++|+..|++|.+||+|...+...++++ +.| .++|++.+|..+..+
T Consensus 215 lPvILV~~~~-LG~INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~---~~~~~~~pv~~lp~~p~~~ 281 (817)
T PLN02974 215 LPAILVGDGR-LGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALL---SYLSNRVPVFVLPPVPEDP 281 (817)
T ss_pred CCEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHH---HHHhcCCcEEeCCCCCCCc
Confidence 3579999996 66899999999999999999999999954433333444 443 389999999877665
No 125
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00022 Score=70.56 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++=+||-+|+||||+--++...+.++|+||-++ ..||+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl--AVDPS 90 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL--AVDPS 90 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE--EECCC
Confidence 37889999999999999999999999999999999 88996
No 126
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00065 Score=72.25 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=34.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcC-CceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAG-LSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G-~rvLLv~~d~Dp 89 (449)
.+|+.|.|..||||||+++.+|.++. ++| ++|.++ ++|+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI--~~Dt 296 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL--TTDS 296 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE--eCCc
Confidence 47999999999999999999999885 456 599999 7776
No 127
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.43 E-value=0.0034 Score=67.03 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=28.5
Q ss_pred EEEeCC-CCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGK-GGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GK-GGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|++|- .+||||+++++++..+.++|++|.-+
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~f 33 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPF 33 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 467775 58999999999999999999999977
No 128
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.40 E-value=0.0068 Score=67.64 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=30.6
Q ss_pred CcEEEEEeCC-CCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGK-GGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GK-GGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|++-++++|- .|+|||+++++++.+|.++|+||...
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~f 37 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFF 37 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 3555666664 58999999999999999999999987
No 129
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.34 E-value=0.0018 Score=63.38 Aligned_cols=39 Identities=26% Similarity=0.206 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
..+++++|..|+||||++.++|..++.. |.+|+.+ |++.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i--S~E~ 69 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI--SLEE 69 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE--Eccc
Confidence 5799999999999999999999999887 9999999 5543
No 130
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.30 E-value=0.00091 Score=61.34 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCCCc-eEEEeecCCCeEEEEECC-eeeeecCCcccccCccceEEeCCEEEEEc
Q 013114 387 KKSVTLLMPGFDKSE-IKLYQYRGGSELLVEAGD-QRRVIHLPPQIQGKVGGARFIERNLIVTM 448 (449)
Q Consensus 387 ~y~l~l~LP~~~~~~-l~l~~~~~gdeL~I~~g~-~rR~i~LP~~L~~~~~~A~~~~g~L~I~f 448 (449)
...|.+.|||+.+++ |++.......+|+|++|+ +-+.|.||.. ..+...+.|.||+|.|++
T Consensus 103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nNgILEIri 165 (177)
T PF05455_consen 103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNNGILEIRI 165 (177)
T ss_pred cEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeCceEEEEE
Confidence 478899999998888 777774346888888876 9999999976 457889999999999986
No 131
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.26 E-value=0.00031 Score=69.59 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=34.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+++.+.|.+|+||||++.+++..|+++| +|.+| +.||
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I--Khd~ 38 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV--KHMD 38 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE--EEcC
Confidence 57899999889999999999999999999 89999 7666
No 132
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0031 Score=58.14 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=36.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++-|||=.|.||||+|.+++..|-++|++|-++ |.|-
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L--DGDn 61 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL--DGDN 61 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe--cChh
Confidence 57999999999999999999999999999999999 9884
No 133
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00034 Score=65.97 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=59.9
Q ss_pred cceEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEEE----------------------CCeeeeecCCcccccCc
Q 013114 379 SSVKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA----------------------GDQRRVIHLPPQIQGKV 434 (449)
Q Consensus 379 ~~~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~----------------------g~~rR~i~LP~~L~~~~ 434 (449)
++..+.+ +.|.+.+.+|++.++++++... .++.|+|+. |.|.|.+.||..+..+.
T Consensus 85 ~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~-~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 85 VPWDVKESPDAHEFKVDLPGLKKEDIKVEVE-DEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred CCcccccCCCceEEEeeCCCCCchhceEEec-cCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 4555555 4999999999999999999985 333699984 99999999999997789
Q ss_pred cceEEeCCEEEEEcC
Q 013114 435 GGARFIERNLIVTMG 449 (449)
Q Consensus 435 ~~A~~~~g~L~I~f~ 449 (449)
+.|.|+||+|+|..|
T Consensus 164 ikA~~~nGVL~Vvvp 178 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVP 178 (196)
T ss_pred HHHHhhCCeEEEEEe
Confidence 999999999999875
No 134
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.23 E-value=0.0013 Score=62.46 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=38.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+.-+++.++|.+|+||||+|..+|..++.+|.+|+.+ |++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi--~~e~~ 58 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI--DTEGL 58 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE--ECCCC
Confidence 4569999999999999999999999999999999999 77653
No 135
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.18 E-value=0.0044 Score=59.52 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=36.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
+...+++++|..|+||||++.++|..++.. |.+|+.++.+..+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 346899999999999999999999999998 9999999443333
No 136
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.17 E-value=0.0057 Score=58.77 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++-+...++++.|..|+||||+|.+++...+++|.+|+.+ +++-
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~--~~e~ 63 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVI--TTEN 63 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEE--EcCC
Confidence 3445679999999999999999999999988899999999 5543
No 137
>PHA02542 41 41 helicase; Provisional
Probab=97.15 E-value=0.0036 Score=66.77 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
....+++++|..|+||||+|.++|..+|+.|++|+++ |.+.+
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~f--SLEM~ 229 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYI--SMEMA 229 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEE--eccCC
Confidence 3457999999999999999999999999999999999 66653
No 138
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.10 E-value=0.0033 Score=61.60 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=71.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccCCCCeeecCCcceeecCchhhhhhhHH
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLN 126 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~~ 126 (449)
+.+.+|++.|-.|+||||..-.|-.++.+++.+-.+| ..||+...+ + +...+|....+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi--NLDPAv~~v---p------------y~aniDIRDtV----- 74 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI--NLDPAVRNV---P------------YPANIDIRDTV----- 74 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE--eCCHHHhcC---C------------CccCCchhhhh-----
Confidence 3478999999999999999999999999999999999 999974322 1 22334433222
Q ss_pred HHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchH
Q 013114 127 WLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEE 197 (449)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~ 197 (449)
..++.+.++.. |-...| .-++ .++ ..+++++++++++ ..+++|+||||||.--+
T Consensus 75 kYkEvMkqY~L--GPNGgI-------~TsL-NLF-~tk~dqv~~~iek------~~~~~~~~liDTPGQIE 128 (366)
T KOG1532|consen 75 KYKEVMKQYQL--GPNGGI-------VTSL-NLF-ATKFDQVIELIEK------RAEEFDYVLIDTPGQIE 128 (366)
T ss_pred hHHHHHHHhCC--CCCcch-------hhhH-HHH-HHHHHHHHHHHHH------hhcccCEEEEcCCCceE
Confidence 12333333321 100111 1111 333 3467777777765 34679999999998655
No 139
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.08 E-value=0.0019 Score=61.85 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=34.1
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 53 TFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 53 ~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++.|..|+||||-+..+..-+++.|.++.+| ..||+
T Consensus 6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vV--NLDPa 41 (290)
T KOG1533|consen 6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV--NLDPA 41 (290)
T ss_pred EEEcCCCCCccchhhhHHHHHHHhCCceEEE--ecCCc
Confidence 6789999999999999999999999999999 99996
No 140
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=97.06 E-value=0.022 Score=55.16 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=33.2
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
.+|++| -.|.||-.+|+.++..|-.+|++|..+ -.||=
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~--K~DpY 41 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQ--KLDPY 41 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEE--eeccc
Confidence 567776 369999999999999999999999999 77773
No 141
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.02 E-value=0.0012 Score=60.36 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|-.|+||||+|.++|..+...|.++.++ |.|.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i--d~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL--DGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--cCcc
Confidence 357999999999999999999999999999999999 8885
No 142
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.00 E-value=0.00048 Score=66.87 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=28.6
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 54 FLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 54 ~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+.|..|+||||.+.++..++...|+++.+| -.||+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v--NLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV--NLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE--E--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE--EcchH
Confidence 468899999999999999999999999999 99997
No 143
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.99 E-value=0.0054 Score=60.23 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=36.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
-+...+++++|..|+||||+|..+|...+++|.+++.+ |++
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyi--s~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFV--TVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEE--Eec
Confidence 34578999999999999999999999999999999999 554
No 144
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.97 E-value=0.00072 Score=61.37 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..+|.++|-.|+||||+|.++...|-+.|.+|.++ |.|
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L--DgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL--DGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE--EHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe--cCc
Confidence 36899999999999999999999999999999999 766
No 145
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.00095 Score=65.04 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|++|+|||++++++|.++.++|++|+++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4789999999999999999999999999999988
No 146
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.95 E-value=0.0053 Score=62.12 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++-+..+++.+.|..|+||||+|..++...++.|.+++.| |+..+
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yI--d~E~~ 94 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI--DAEHA 94 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE--cccch
Confidence 3445679999999999999999999999999999999999 87654
No 147
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.93 E-value=0.0013 Score=60.30 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=34.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++++.|..|+|||++|..++...++.|.+|+.+ +++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~--s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYV--TLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE--ECCCC
Confidence 468899999999999999999999999999999 66654
No 148
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0041 Score=65.01 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=37.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+-+|.|.|-.||||||.=|-+|.+|-+.+.|||+. -+|+
T Consensus 378 PYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIA--ACDT 416 (587)
T KOG0781|consen 378 PYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIA--ACDT 416 (587)
T ss_pred CeEEEEEeecCccccchHHHHHHHHHhCCceEEEE--eccc
Confidence 68999999999999999999999999999999999 8887
No 149
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.92 E-value=0.0064 Score=62.63 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhh
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYI 94 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~ 94 (449)
-++++.|.-++||||+++-+|..+-++|+||.++ |+|+.-+++
T Consensus 74 ~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ii--DaDvGQ~ei 116 (398)
T COG1341 74 GVVMVVGPVDSGKSTLTTYLANKLLARGRKVAII--DADVGQSEI 116 (398)
T ss_pred cEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEE--eCCCCCccc
Confidence 3455555557999999999999999999999999 999864444
No 150
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.91 E-value=0.0062 Score=61.74 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=38.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+-+.-+|+.+.|..|+||||+|..++...++.|.+++.| |+..+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyI--d~E~~ 94 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFI--DAEHA 94 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE--Ccccc
Confidence 345678999999999999999999999999999999999 87554
No 151
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.85 E-value=0.0044 Score=59.10 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
+.-.++.++|.+|+|||++|.++|...++.|.+|+.+ |++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi--~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYI--DTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--ECC
Confidence 4568999999999999999999999999999999999 766
No 152
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.83 E-value=0.004 Score=59.42 Aligned_cols=41 Identities=27% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
+...++++.|..|+|||++|..++...+++ |.+|+.+ +++-
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyv--s~ee 58 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYV--SFEE 58 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEE--ESSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEE--EecC
Confidence 456899999999999999999999999999 9999999 5554
No 153
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.83 E-value=0.0016 Score=59.31 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.|.+++|. |.||||.|.++|+..+.+|+||+++
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 68889998 8999999999999999999999996
No 154
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.81 E-value=0.0021 Score=60.34 Aligned_cols=41 Identities=32% Similarity=0.384 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+...++.++|+.|+||||+|.+++..+...|..++++ |.|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l--d~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL--DGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE--cCEe
Confidence 4468999999999999999999999999999999999 8876
No 155
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.80 E-value=0.0031 Score=60.48 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=30.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILN 96 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g 96 (449)
+..+++.|+.|+||||+|.+++ .+++++ +.|-+...+.|
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~--~~d~~~~~l~g 50 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVL--SFDMSSKVLIG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEE--eccccchhccC
Confidence 3568999999999999998874 578999 88876444333
No 156
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=96.75 E-value=0.002 Score=68.08 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=44.4
Q ss_pred CcEEEEEeC-CC---CCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccCC
Q 013114 48 STTLITFLG-KG---GSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGN 101 (449)
Q Consensus 48 ~~rii~~~G-KG---GVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~~ 101 (449)
..++|++++ -. |.||||+|+++|..+++.|+||+++ =-.|+++..||.+-+.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kgga 92 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKGGA 92 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCCCC
Confidence 357777776 56 9999999999999999999999988 6678999999988543
No 157
>PRK05973 replicative DNA helicase; Provisional
Probab=96.74 E-value=0.00098 Score=64.62 Aligned_cols=74 Identities=16% Similarity=0.072 Sum_probs=48.3
Q ss_pred cccccccccccCCccCCCcceeeeccCCCCC---CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 12 PLTSFHHLKGRRKSRSRRPRAMPISASDAGT---DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
|+|..+-.-++.+.=+.|-++....+....- .++-+.-.++++.|..|+||||+|.++|...++.|++|+.+|.
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 3444444444444434455444333321111 1122456899999999999999999999999999999999933
No 158
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=96.73 E-value=0.0027 Score=67.86 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=43.9
Q ss_pred CcEEEEEeC-CC---CCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccC
Q 013114 48 STTLITFLG-KG---GSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIG 100 (449)
Q Consensus 48 ~~rii~~~G-KG---GVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~ 100 (449)
..+++++++ -. |.||||+|+++|..+++.|+||+++ =--|+++..||.+-+
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~kgg 108 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIKGG 108 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCCCC
Confidence 357777776 56 9999999999999999999999999 567899999988744
No 159
>PRK06696 uridine kinase; Validated
Probab=96.72 E-value=0.0028 Score=60.59 Aligned_cols=39 Identities=28% Similarity=0.152 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
.+.||.++|.+|+||||+|..+|..+...|..++.+ ++|
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~--~~D 59 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRA--SID 59 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe--ccc
Confidence 368999999999999999999999999889999988 655
No 160
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.002 Score=63.21 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..=+++.|+.|||||.+|+|+|..+.+.|.+|+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 34678999999999999999999999889999999
No 161
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=96.70 E-value=0.0086 Score=47.18 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-----CCeeeeecCCcccccCccceEEeCCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-----GDQRRVIHLPPQIQGKVGGARFIERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-----g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f~ 449 (449)
+.+.+.+.+|+..++++++... ++.|.|++ +.|.+.+.|+..+..+...+++++|.|.|++.
T Consensus 6 ~~v~i~v~~~~~~~~~~~v~~~--~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~ 72 (84)
T cd06463 6 DEVTITIPLKDVTKKDVKVEFT--PKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLK 72 (84)
T ss_pred cEEEEEEEcCCCCccceEEEEe--cCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEE
Confidence 4678999999999999999985 89999997 67899999999999989999999999999873
No 162
>PRK07667 uridine kinase; Provisional
Probab=96.67 E-value=0.0028 Score=59.31 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=35.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..||.++|-.|+||||+|..++..+.+.|.+|.++ +.|-
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i--~~Dd 55 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIF--HIDD 55 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE--EcCc
Confidence 37889999999999999999999999999999999 7775
No 163
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.66 E-value=0.002 Score=62.70 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=33.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+|+++|..|+||||+|.++|..+...|.++.++ |.|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i--~~D~ 37 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIIL--GTDL 37 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE--ccHH
Confidence 589999999999999999999999999999999 7653
No 164
>PRK05595 replicative DNA helicase; Provisional
Probab=96.65 E-value=0.011 Score=62.74 Aligned_cols=40 Identities=28% Similarity=0.240 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
...+++++|-.|+|||++|.++|..+| ++|++|+++ |...
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~f--SlEm 240 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIF--SLEM 240 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEE--ecCC
Confidence 357999999999999999999999877 569999999 5554
No 165
>PRK06762 hypothetical protein; Provisional
Probab=96.65 E-value=0.0024 Score=57.87 Aligned_cols=37 Identities=51% Similarity=0.536 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+++++++|..|+||||+|..++..+ |..+.++ +.|-
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i--~~D~ 37 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLV--SQDV 37 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEe--cHHH
Confidence 57899999999999999999999887 4567777 7654
No 166
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.056 Score=56.76 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-c-CCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-A-GLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~-G~rvLLv~~d~Dp 89 (449)
...++.+.|..|+||||+.+.+|..+.. . +.++.++ .+|.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i--~~d~ 231 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALL--TTDS 231 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE--ecCC
Confidence 3589999999999999999999986543 3 4778888 4443
No 167
>PF13245 AAA_19: Part of AAA domain
Probab=96.60 E-value=0.0045 Score=49.24 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc----CCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA----GLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~----G~rvLLv~~d~Dps 90 (449)
.++.++.|-.|+|||+++++.+.++... |++|+++ ...-.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~--a~t~~ 53 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVL--APTRA 53 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE--CCCHH
Confidence 4677889999999999999998888876 8999999 65543
No 168
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.59 E-value=0.0025 Score=62.26 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++=+||.+|+||||+.-+++..+.++|+||-++ ..||+
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl--AVDPS 68 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL--AVDPS 68 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE--EE-GG
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE--EECCC
Confidence 47889999999999999999999999999999999 88996
No 169
>PRK08006 replicative DNA helicase; Provisional
Probab=96.58 E-value=0.015 Score=62.11 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=35.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
...++++.|-.|+|||+.|.++|..+|. +|++|+++ |...+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~f--SlEM~ 264 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIF--SLEMP 264 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEE--eccCC
Confidence 3589999999999999999999999985 69999999 55543
No 170
>PRK08760 replicative DNA helicase; Provisional
Probab=96.54 E-value=0.013 Score=62.50 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
....++++.|..|+||||.+.++|...|. .|++|+++ |...+
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~f--SlEMs 269 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVF--SMEMS 269 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEE--eccCC
Confidence 33589999999999999999999999985 59999999 66553
No 171
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.54 E-value=0.0049 Score=57.94 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=37.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
+-+..+++.+.|.+|+|||++|..+|...++.|.+|+.+ |++
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi--~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYI--DTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE--ECC
Confidence 334579999999999999999999999999999999999 664
No 172
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.47 E-value=0.014 Score=57.00 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=34.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
..++++.|..|+|||+.+.++|..++.. |++|+.+ |.+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~--SlEm 58 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYF--SLEM 58 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEE--ESSS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEE--cCCC
Confidence 5799999999999999999999999997 6999999 5554
No 173
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.43 E-value=0.0035 Score=58.02 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=33.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
|+.++|..|+||||+|..++..+...|.++.++ ++|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i--~~D 36 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVI--SLD 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE--ehh
Confidence 578899999999999999999999999999999 665
No 174
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.43 E-value=0.0038 Score=56.03 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=34.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+++++|..|+||||+|..++..+...|.++.++ +.|+-
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i--~~d~~ 38 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVL--DGDNV 38 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE--cCHHH
Confidence 478899999999999999999999999999888 87763
No 175
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.43 E-value=0.0053 Score=56.65 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-.|.+++| .|.||||.|..+|+.++.+|+||+++
T Consensus 6 Gli~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 46788888 78999999999999999999999998
No 176
>PRK06526 transposase; Provisional
Probab=96.43 E-value=0.0023 Score=62.73 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|++|+|||++|+++|..+.++|++|+.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 45689999999999999999999999999999766
No 177
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0037 Score=53.24 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=25.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|+++|..|+||||+|..+|..+ |..++-+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~ 30 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISM 30 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEe
Confidence 68999999999999999998777 7666544
No 178
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.40 E-value=0.02 Score=60.12 Aligned_cols=40 Identities=28% Similarity=0.239 Sum_probs=35.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
...+++++|..|+|||+.+.++|..+| +.|++|+.+ |.+.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f--SlEm 233 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF--SLEM 233 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE--ECCC
Confidence 357999999999999999999999998 679999999 5554
No 179
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.38 E-value=0.0046 Score=56.00 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+.+.|+.|+||||++.+++..+.++|+||.++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 567889999999999999999999999999999
No 180
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.38 E-value=0.0053 Score=59.28 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+++.++|..|+||||++.+++..|.++|+||.++
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 57899999889999999999999999999999999
No 181
>PRK09165 replicative DNA helicase; Provisional
Probab=96.31 E-value=0.023 Score=61.04 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc---------------CCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA---------------GLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~---------------G~rvLLv~~d~Dp 89 (449)
....++++.|-.|+||||.|.++|...|.. |++|+++ |...
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f--SlEM 270 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF--SLEM 270 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE--eCcC
Confidence 335799999999999999999999999864 8999999 5554
No 182
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0036 Score=59.12 Aligned_cols=39 Identities=31% Similarity=0.227 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|.+++++|-.|+||||.|-++|..|.+.+.+|..+ +.|-
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l--~kdy 39 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHL--EKDY 39 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhcccc--chhh
Confidence 57899999999999999999999999999999988 6654
No 183
>PRK07004 replicative DNA helicase; Provisional
Probab=96.28 E-value=0.024 Score=60.36 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=35.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
...+++++|..|+|||+.|.++|...|. .|+.|+++ |...+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~f--SlEM~ 253 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVF--SMEMP 253 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEE--eCCCC
Confidence 3579999999999999999999999885 69999999 66553
No 184
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.28 E-value=0.0054 Score=56.85 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|+.|+|||.+|+++|..+.++|++|+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 45688889999999999999999999999999988
No 185
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.25 E-value=0.028 Score=59.15 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dp 89 (449)
....+++++|..|+||||.+.++|..+|. .|++|+.+ |.+.
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~--SlEm 234 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFF--SLEM 234 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEE--eCcC
Confidence 34689999999999999999999999986 69999999 5554
No 186
>PRK08840 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.029 Score=59.81 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
....++++.|..|+|||+.|.++|..+|. +|++|+++ |...+
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~f--SlEMs 257 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIF--SLEMP 257 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEE--eccCC
Confidence 34689999999999999999999999985 69999999 66654
No 187
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.012 Score=54.41 Aligned_cols=69 Identities=23% Similarity=0.201 Sum_probs=58.1
Q ss_pred cceEEecCceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCccccc-CccceEEeCCEE
Q 013114 379 SSVKFDAAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQG-KVGGARFIERNL 444 (449)
Q Consensus 379 ~~~~i~~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~-~~~~A~~~~g~L 444 (449)
.++...+++|.|.+..-.+.++||.+... |+.|.|++ -.|.|.+.||..+.. .+...=-.||.|
T Consensus 65 ~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~--~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvL 142 (173)
T KOG3591|consen 65 SEIVNDKDKFEVNLDVHQFKPEELKVKTD--DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVL 142 (173)
T ss_pred cccccCCCcEEEEEEcccCcccceEEEeC--CCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceE
Confidence 44455557999999999999999999984 88899996 578899999999999 577777788999
Q ss_pred EEEcC
Q 013114 445 IVTMG 449 (449)
Q Consensus 445 ~I~f~ 449 (449)
+|.-|
T Consensus 143 tI~ap 147 (173)
T KOG3591|consen 143 TIEAP 147 (173)
T ss_pred EEEcc
Confidence 99743
No 188
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.20 E-value=0.015 Score=55.12 Aligned_cols=38 Identities=32% Similarity=0.430 Sum_probs=35.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-.++.|..|+||||-+.++-.+.-.-|+++-+| ..||+
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vV--NLDPA 42 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVV--NLDPA 42 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEe--ecCHH
Confidence 357789999999999999999999999999999 99997
No 189
>PRK08506 replicative DNA helicase; Provisional
Probab=96.20 E-value=0.03 Score=59.85 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++++.|-.|+|||+.|.++|..+++.|++|+++ |...
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f--SlEM 230 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF--SLEM 230 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE--eCcC
Confidence 357999999999999999999999999999999999 5554
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.19 E-value=0.0046 Score=52.23 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.+++.|..|+||||++..+|..+...++.++.+ +.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~--~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE--CCEE
Confidence 36788999999999999999999998887788888 6554
No 191
>PRK04296 thymidine kinase; Provisional
Probab=96.19 E-value=0.0082 Score=56.09 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=33.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|..|++++|.-|+||||.+..++..++.+|++|+++
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 357899999999999999999999999999999988
No 192
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.15 E-value=0.0076 Score=53.69 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceE-EEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTC-LVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvL-Lv~~d~Dp 89 (449)
++.+.|.-|+||||++..+...+.++|+||. +. +.|+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik--~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK--HTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE--E-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE--EccC
Confidence 5667777799999999999999999999999 55 5555
No 193
>PHA00729 NTP-binding motif containing protein
Probab=96.15 E-value=0.005 Score=59.19 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
..-++++|..||||||+|.++|..+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999875
No 194
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.12 E-value=0.067 Score=50.72 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=35.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC------CceEEEecCCC
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAG------LSTCLVLHSQD 88 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G------~rvLLv~~d~D 88 (449)
+.-.++.+.|..|+|||+++..+|...+..| .+|+.+ |++
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi--~~e 62 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI--DTE 62 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEE--ecC
Confidence 4468999999999999999999999988877 899999 654
No 195
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=96.07 E-value=0.21 Score=48.99 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=32.1
Q ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++.||++| -.|.||-.+|++++..|..+|++|..+ -.||=
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~--K~DPY 42 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI--KIDPY 42 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE--EEE-S
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee--eeccc
Confidence 47788887 479999999999999999999999999 77774
No 196
>PRK05748 replicative DNA helicase; Provisional
Probab=96.04 E-value=0.037 Score=58.68 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dp 89 (449)
....+++++|..|+||||.|.++|...|. .|++|+++ |...
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~f--SlEm 242 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIF--SLEM 242 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEE--eCCC
Confidence 34589999999999999999999999885 59999999 5554
No 197
>PRK06321 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.043 Score=58.60 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
....++++.|..|+|||+.|.++|..+|. .|++|+++ |...+
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~f--SLEMs 266 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIF--SLEMT 266 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEE--eccCC
Confidence 33579999999999999999999999985 69999999 55543
No 198
>PRK05636 replicative DNA helicase; Provisional
Probab=96.02 E-value=0.035 Score=59.76 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
....++++.|..|+||||.|.++|..+|. .|++|+++ |...+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~f--SlEMs 305 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIF--SLEMS 305 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE--EeeCC
Confidence 34679999999999999999999998884 69999999 65543
No 199
>PRK06904 replicative DNA helicase; Validated
Probab=96.02 E-value=0.04 Score=58.81 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dps 90 (449)
....++++.|-.|+|||+.|.++|..+|. .|++|+++ |...+
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~f--SlEMs 261 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVF--SLEMP 261 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEE--eccCC
Confidence 44689999999999999999999999986 59999999 66654
No 200
>PRK12377 putative replication protein; Provisional
Probab=96.01 E-value=0.0079 Score=58.80 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=31.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|+.|+|||++|.|+|..+.+.|++|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 5688999999999999999999999999999887
No 201
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.01 E-value=0.013 Score=54.14 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+..++.++|..|+||||+|..++..+...|..++++ +.|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l--~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVL--DGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE--CChH
Confidence 3468999999999999999999999998889888888 7775
No 202
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.00 E-value=0.011 Score=53.78 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=33.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+++.+.|..|+||||++..++..+..+|++|.++
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 57899999999999999999999999999999988
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.98 E-value=0.011 Score=54.23 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
...++++.|-.|+||||+|..++..+...|..+.++ |.|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~--~~d 44 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL--DGD 44 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE--ecH
Confidence 357999999999999999999999999888888888 655
No 204
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.97 E-value=0.0098 Score=54.92 Aligned_cols=40 Identities=30% Similarity=0.244 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH----------cCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM----------AGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~----------~G~rvLLv~~d~Dps 90 (449)
..+.++.|.+|+||||++.++|..++. .+.+||.+ +++-+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i--~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYI--SLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEE--ESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEE--eccCC
Confidence 468999999999999999999999997 67899999 65543
No 205
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.15 Score=58.12 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=28.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.......||||||.-+.+|+++|.+|+|+++|
T Consensus 100 FaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii 131 (1187)
T COG1110 100 FAIIAPTGVGKTTFGLLMSLYLAKKGKRVYII 131 (1187)
T ss_pred eEEEcCCCCchhHHHHHHHHHHHhcCCeEEEE
Confidence 34456789999999999999999999999988
No 206
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.90 E-value=0.015 Score=56.93 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++-+.-++++++|..|+|||+.+.+++...++.|.+|+.|+.+-+|
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 4446789999999999999999999999999999999999555555
No 207
>PRK09183 transposase/IS protein; Provisional
Probab=95.83 E-value=0.011 Score=58.09 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+++.|+.|+|||++|.++|..+..+|++|+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5677899999999999999999988999999988
No 208
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.78 E-value=0.02 Score=55.26 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=36.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+...++.+.|..|+||||+|.+++..++++|.+++.+ +++-+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi--~~e~~ 63 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYV--STQLT 63 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE--eCCCC
Confidence 4467999999999999999999999999999999999 65543
No 209
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.78 E-value=0.018 Score=53.18 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
.++.++.+.|..|+||||+...+...+..+|+||..|-+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 357899999999999999999999999999999998843
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.75 E-value=0.013 Score=59.05 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+=+++.|+-|+|||.+++|+|..++++|++|..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 35688999999999999999999999999999988
No 211
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=95.73 E-value=0.018 Score=61.63 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=41.6
Q ss_pred cEEEEEeC-CC---CCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccCC
Q 013114 49 TTLITFLG-KG---GSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGN 101 (449)
Q Consensus 49 ~rii~~~G-KG---GVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~~ 101 (449)
.++|.+++ -. |.||||+|+++|..+++.|+||+.. =-.|+++..||.+-+.
T Consensus 54 ~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i~~--LR~Pslg~~fg~kgga 108 (578)
T PRK13506 54 GKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVCAC--IRQPSMGPVFGVKGGA 108 (578)
T ss_pred CeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceEEE--eccCCcCCccCCCCCC
Confidence 57888877 45 9999999999999999999999433 3457899999887543
No 212
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.73 E-value=0.014 Score=53.20 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVL 84 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~ 84 (449)
||+|+-++|.-|+||||+...+...+.++|+||.+|-
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 5899999999999999999999999999999999993
No 213
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.71 E-value=0.018 Score=54.31 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=32.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.++|..|+||||+|.+++..+ .+..+.++ +.|.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i--~~D~ 42 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVI--PQDS 42 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEE--eCCc
Confidence 35799999999999999999999888 46678888 7765
No 214
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.016 Score=52.05 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=35.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
--+|-++|=.|+||||+|+|+..+|-++|+-+..+ |.|-
T Consensus 31 GcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~L--DGDN 69 (207)
T KOG0635|consen 31 GCVIWITGLSGSGKSTLACALSQALLQRGKLTYIL--DGDN 69 (207)
T ss_pred CcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEe--cCcc
Confidence 45788899999999999999999999999999999 8874
No 215
>PRK09354 recA recombinase A; Provisional
Probab=95.63 E-value=0.13 Score=52.71 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=39.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+-+.-+|+.+.|..|+||||+|..++...++.|.+++.| |+..+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yI--d~E~s 99 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFI--DAEHA 99 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE--CCccc
Confidence 345679999999999999999999999999999999999 87654
No 216
>PF05729 NACHT: NACHT domain
Probab=95.57 E-value=0.013 Score=51.99 Aligned_cols=28 Identities=32% Similarity=0.296 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
|+++++|++|+||||++..++..+++.+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 6889999999999999999999999875
No 217
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.54 E-value=0.02 Score=44.41 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++.++|..|+||||++.+++..+ .|.++.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 46778999999999999999999 67888877
No 218
>COG4240 Predicted kinase [General function prediction only]
Probab=95.53 E-value=0.019 Score=55.08 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG-LSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G-~rvLLv~~d~D 88 (449)
+-|+.++|.-|+||||+|+.+-..++++| +||+-. |.|
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l--SLD 88 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL--SLD 88 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe--ehh
Confidence 58999999999999999999999999998 799988 665
No 219
>PRK05439 pantothenate kinase; Provisional
Probab=95.48 E-value=0.026 Score=56.93 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH--cCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM--AGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~--~G~rvLLv~~d~D 88 (449)
.+.||.++|-.|+||||+|..++..+.+ .|.+|.++ ++|
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi--~~D 125 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELV--TTD 125 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEE--ecc
Confidence 3588999999999999999999998877 47899999 666
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.46 E-value=0.014 Score=59.44 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||++|.++|..+..+|++|+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~ 217 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR 217 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5688999999999999999999999999999988
No 221
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.45 E-value=0.017 Score=54.70 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=33.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
.+.+++.|+.|+|||++|.+++..+-+.|.+++.+ +++
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i--~~~ 75 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL--PLA 75 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE--eHH
Confidence 57889999999999999999999988888888888 543
No 222
>PF13479 AAA_24: AAA domain
Probab=95.45 E-value=0.05 Score=51.69 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-.+++-|..|+||||+|..+ .++|++ |+|.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~i--d~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL--------PKPLFI--DTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC--------CCeEEE--EeCCC
Confidence 45677799999999998777 799999 88764
No 223
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.45 E-value=0.022 Score=54.31 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=34.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.+++.|+.|+|||++|.+++..+.+.|.++..+ ++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i--~~~~ 80 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYL--DAAS 80 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE--ehHH
Confidence 46789999999999999999999998899999988 6543
No 224
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.43 E-value=0.017 Score=58.98 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=33.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
+.+++|-.|+||||++.+++.++. +.|.+|.++ |.|-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~--~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVI--TYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEE--cccc
Confidence 468999999999999999999998 589999999 8774
No 225
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.42 E-value=0.037 Score=52.82 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.-.++++.|..|+||||++.+++...+++|.+++.+ +++-
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~i--s~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYV--TTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEE--EccC
Confidence 4568999999999999999999999888899999999 5543
No 226
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.42 E-value=0.023 Score=52.26 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|++.|.-|+||||++..+|..+...|++|..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3788999999999999999999999999999776
No 227
>PRK08233 hypothetical protein; Provisional
Probab=95.41 E-value=0.015 Score=53.00 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..|+.++|..|+||||+|.++|..+. +..++.. |.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~--d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK--NSKALYF--DRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEE--CCE
Confidence 47888899999999999999998874 2356655 544
No 228
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.41 E-value=0.02 Score=59.98 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=34.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
|+|+-++|+-|+||||+...+...|.++|+||.+|-+
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 5799999988999999999999999999999999853
No 229
>PRK08727 hypothetical protein; Validated
Probab=95.40 E-value=0.017 Score=55.73 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+++.|+.|+|||.++.+++..+.++|++|..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4589999999999999999999999999999998
No 230
>PRK08181 transposase; Validated
Probab=95.40 E-value=0.018 Score=56.95 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+-+++.|+.|+|||.+|.++|..+.++|++|+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999999999999999888
No 231
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.36 E-value=0.088 Score=59.21 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+-+..+|+.+.|..|+||||+|..++...++.|.+++.+ |+..+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yI--d~E~t 99 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFI--DAEHA 99 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE--CCccc
Confidence 445679999999999999999999999988999999999 87654
No 232
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.35 E-value=0.015 Score=54.30 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCc----eEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLS----TCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~r----vLLv 83 (449)
||.++|-+|+||||+|..++..+.+.|.. +.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~ 37 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIIL 37 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEE
Confidence 68899999999999999999999998877 5566
No 233
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.33 E-value=0.021 Score=54.72 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=30.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH--cCCceEEEecCCC
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAM--AGLSTCLVLHSQD 88 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~--~G~rvLLv~~d~D 88 (449)
|+-++|..|+||||+|..++..+.. .+.++.++ +.|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi--~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELI--TTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEE--ecC
Confidence 4678899999999999999999876 56789999 555
No 234
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.31 E-value=0.018 Score=53.93 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=26.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH--------HHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY--------AMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l--------A~~G~rvLLv 83 (449)
+.++.|..|+||||+.++++..+ ...+.++|++
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~ 59 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVV 59 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceee
Confidence 78999999999999999988888 5679999998
No 235
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.30 E-value=0.023 Score=56.11 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=33.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
||.++|-.|+||||++.+++..+.+.|.++.++ +.|.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI--~~D~ 37 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVV--EGDS 37 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEE--eccc
Confidence 467899999999999999999999999999999 7764
No 236
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.30 E-value=0.027 Score=48.08 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.+++.|..|+||||++..++..+...+..+..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 46789999999999999999999998888888877
No 237
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.27 E-value=0.045 Score=52.14 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+...++++.|..|+|||++|..++...+++|++++.+ +++-
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~--s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYI--SLEE 54 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE--ECCC
Confidence 3468999999999999999999999999999999999 5554
No 238
>PRK15453 phosphoribulokinase; Provisional
Probab=95.27 E-value=0.029 Score=55.70 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..-||.++|-.|+||||+|.+++..+.+.|.++.++ +.|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi--~~D 42 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV--EGD 42 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE--ecc
Confidence 346889999999999999999999998888889999 666
No 239
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.055 Score=56.06 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch------hhhhhhccCCCCeeecCCccee-ecCchh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA------EYILNCKIGNSPVVCNSNLSAV-RIETTK 119 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl------~d~~g~~~~~~p~~i~~~L~~~-eid~~~ 119 (449)
-.-.+++++|-.|+||||+-..+|..+|++| |||.| +..-|. ++-+|++. +|++.. |.+
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYV--sGEES~~QiklRA~RL~~~~--------~~l~l~aEt~--- 156 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYV--SGEESLQQIKLRADRLGLPT--------NNLYLLAETN--- 156 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEE--eCCcCHHHHHHHHHHhCCCc--------cceEEehhcC---
Confidence 3357899999999999999999999999999 99999 877663 34455431 444433 233
Q ss_pred hhhhhHHHHHHHHHhhhhc---ccccCCccccccCCCCC
Q 013114 120 MFLEPLNWLKQADARLNMT---QGVLGGVVGEELGVLPG 155 (449)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~el~~~Pg 155 (449)
++++.+.+...... -...+.++.+++...||
T Consensus 157 -----~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapG 190 (456)
T COG1066 157 -----LEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPG 190 (456)
T ss_pred -----HHHHHHHHHhcCCCEEEEeccceeecccccCCCC
Confidence 44444443332111 11224567788899999
No 240
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.22 E-value=0.042 Score=53.06 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
-+...++++.|..|+|||++|..++...+++|.+++.++.+-.|
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHP 61 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCH
Confidence 34579999999999999999999999988999999999443333
No 241
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.22 E-value=0.067 Score=53.97 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=56.1
Q ss_pred ceEEEEEcCCC-CCCceEEEeecCCCeEEEEECC--eeeeecCCcccccCccceEEeC--CEEEEEcC
Q 013114 387 KKSVTLLMPGF-DKSEIKLYQYRGGSELLVEAGD--QRRVIHLPPQIQGKVGGARFIE--RNLIVTMG 449 (449)
Q Consensus 387 ~y~l~l~LP~~-~~~~l~l~~~~~gdeL~I~~g~--~rR~i~LP~~L~~~~~~A~~~~--g~L~I~f~ 449 (449)
..++++.||++ +-++|+|.+. ++.|.|...+ |+=.++||-.+..+.+.|+|.. ..|+|++|
T Consensus 262 ~lvv~i~LP~~~s~~~i~LdV~--~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 262 ELVVEIELPGVESASDIDLDVS--EDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred eEEEEEECCCcCccceeEEEEe--CCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 57789999999 7788999996 9999999988 9999999999999999999987 89999986
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.029 Score=51.09 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+.=+++||..||||||++.-+|-.+.+.|++|.=+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 34457899999999999999999999999999755
No 243
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.13 E-value=0.025 Score=55.97 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|-+++++|-.|+||||.|..++.++.+.|++|.++
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 56899999999999999999999999999999999
No 244
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.12 E-value=0.036 Score=51.34 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|++.|--|+||||.+..+|.++...|++|..+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 37899999999999999999999999999999766
No 245
>PRK07773 replicative DNA helicase; Validated
Probab=95.09 E-value=0.11 Score=59.91 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dps 90 (449)
....++++.|..|+|||+.|.++|...|.+ |++|+++ |.+.+
T Consensus 215 ~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~f--SlEms 257 (886)
T PRK07773 215 HPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIF--SLEMS 257 (886)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEE--ecCCC
Confidence 345899999999999999999999999865 8999999 66553
No 246
>PRK06893 DNA replication initiation factor; Validated
Probab=95.09 E-value=0.028 Score=54.02 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...+++.|+.|+|||+++.++|..+.++|.++..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~ 73 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYI 73 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEe
Confidence 35688999999999999999999999999999988
No 247
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.08 E-value=0.025 Score=52.76 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=29.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+.++|..|+||||+|..++..+ .|.++.++ +.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~--~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII--SQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE--Eecc
Confidence 57889999999999999998888 56688889 6663
No 248
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.12 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
...++-|-||+||||++.-+.+++|.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~Ialaa 115 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAA 115 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHh
Confidence 34455599999999999999988875
No 249
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.98 E-value=0.044 Score=58.73 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=40.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhh
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEY 93 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d 93 (449)
+-+.-.+++++|..|+||||++..++...|++|.+++.+ +.+-+..+
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~--s~eEs~~~ 305 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILF--AYEESRAQ 305 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--EeeCCHHH
Confidence 335578999999999999999999999999999999999 77765433
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.93 E-value=0.053 Score=47.36 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=34.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhh
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNC 97 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~ 97 (449)
+++.|..|+|||+++-.+|..+ |.++..+..+.+-.-.+++|.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceee
Confidence 5788999999999999999988 888888855555556677664
No 251
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.92 E-value=0.026 Score=50.88 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+..|+++|..|+||||+|.++|..+ |. .++ |.|-
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l---~~--~~~--d~d~ 37 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL---GY--DFI--DTDH 37 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh---CC--CEE--EChH
Confidence 36789999999999999999999887 43 345 6654
No 252
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.91 E-value=0.04 Score=51.78 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++.++.|..|+||||+...++..+...|++|+++
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 47899999999999999999999999999999988
No 253
>PRK05642 DNA replication initiation factor; Validated
Probab=94.89 E-value=0.029 Score=54.25 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.+++.|+.|+|||.++.+++..+.++|++|+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~ 79 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL 79 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 46778999999999999999999999899999998
No 254
>PRK00784 cobyric acid synthase; Provisional
Probab=94.83 E-value=0.03 Score=60.06 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=30.9
Q ss_pred CcEEEEEeCC-CCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGK-GGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GK-GGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
||+-++++|- .|||||+++++++.++.++|++|.-.
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~ 37 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPF 37 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecc
Confidence 3566777775 69999999999999999999998865
No 255
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.79 E-value=0.027 Score=47.89 Aligned_cols=22 Identities=45% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|+++|..|+||||+|..++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887
No 256
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.78 E-value=0.036 Score=53.55 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+.+++.|+.|+|||+++.++|..+.+.|++|..+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4688999999999999999999999999999998
No 257
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.77 E-value=0.092 Score=59.27 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=33.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++.|-.|+||||+=+.+-..|...|++|||. +.-++
T Consensus 687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLt--syThs 724 (1100)
T KOG1805|consen 687 YALILGMPGTGKTTTISLLIKILVALGKKVLLT--SYTHS 724 (1100)
T ss_pred hheeecCCCCCchhhHHHHHHHHHHcCCeEEEE--ehhhH
Confidence 457789999999999999999999999999999 76553
No 258
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.75 E-value=0.049 Score=57.79 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++-....++++.|..|+||||++..+|..++++|.+|+.+ +..-+
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYv--s~Ees 119 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYV--SGEES 119 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE--Ecccc
Confidence 3345578999999999999999999999999999999999 66543
No 259
>PRK06921 hypothetical protein; Provisional
Probab=94.74 E-value=0.04 Score=54.43 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
..-+++.|+.|+|||+++.++|..+.++ |++|+.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~ 152 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF 152 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE
Confidence 3568899999999999999999999988 9999888
No 260
>PRK08116 hypothetical protein; Validated
Probab=94.73 E-value=0.04 Score=54.41 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=31.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+-+++.|..|+|||.+|.++|..+.++|++|+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5688999999999999999999999999999887
No 261
>PRK06851 hypothetical protein; Provisional
Probab=94.72 E-value=0.063 Score=55.38 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...|+++++|..|+||||+...++..+.++|++|.+.--+.||
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3479999999999999999999999999999999998555677
No 262
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.72 E-value=0.066 Score=55.46 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
....++++.|..|+||||++..+|..+++.|.+|+.+ +...
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYv--s~EE 120 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYV--SGEE 120 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE--ECCc
Confidence 4468999999999999999999999999999999999 6543
No 263
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.60 E-value=0.039 Score=52.02 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+++++++|..|+||||+|..+|..+ |..+ ++ +.|.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~--~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VL--SGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-Ee--hhHH
Confidence 5799999999999999999998774 6655 45 6664
No 264
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.59 E-value=0.11 Score=49.59 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCceEEEecCCCc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMA------GLSTCLVLHSQDP 89 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~------G~rvLLv~~d~Dp 89 (449)
+-+.-.++.+.|..|+|||+++..+|...+.. +.+|+.+ |++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi--~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI--DTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEE--eCCC
Confidence 34456899999999999999999999876554 4789999 7654
No 265
>PRK04328 hypothetical protein; Provisional
Probab=94.56 E-value=0.071 Score=51.98 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=37.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
-+...++++.|..|+|||++|..++...+++|.+++.++.+-.|
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP 63 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH
Confidence 34578999999999999999999999988999999999443334
No 266
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.52 E-value=0.058 Score=57.37 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=38.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+-....++++.|..|+||||++..+|..+++.|.+|+.+ +..-+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYv--s~EEs 133 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYV--SGEES 133 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEE--ECcCC
Confidence 345578999999999999999999999999999999999 76544
No 267
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.52 E-value=0.06 Score=50.49 Aligned_cols=34 Identities=32% Similarity=0.321 Sum_probs=29.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-.|++++|. |.||||.|.++|+.++.+|+||+++
T Consensus 23 g~v~v~~g~-GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 23 GLLIVHTGN-GKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred CeEEEECCC-CCChHHHHHHHHHHHHHCCCeEEEE
Confidence 356666665 5999999999999999999999999
No 268
>PRK06761 hypothetical protein; Provisional
Probab=94.49 E-value=0.038 Score=54.99 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=32.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|.++++++|..|+||||++..++..+...|.++-..
T Consensus 2 m~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 2 MTKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 357999999999999999999999998889888764
No 269
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.47 E-value=0.067 Score=51.34 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=33.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEE-EecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCL-VLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLL-v~~d~Dp 89 (449)
...|+.++|..|+||||++..++..+...+-.+.+ + +.|.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i--~~D~ 72 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQV--PMDG 72 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEE--eccc
Confidence 46899999999999999999999999887777666 7 5554
No 270
>PRK06217 hypothetical protein; Validated
Probab=94.46 E-value=0.046 Score=50.47 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=24.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..|+++|-.|+||||+|.++|..+ |.. .+ |.|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l---~~~--~~--~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL---DIP--HL--DTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc---CCc--EE--EcC
Confidence 347788999999999999999766 554 45 655
No 271
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=94.34 E-value=0.063 Score=57.55 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcEEEEEeC----CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhcc
Q 013114 48 STTLITFLG----KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 48 ~~rii~~~G----KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
.-++|++|+ +-|.||||++..|+.+|++.|+++.+. =-.||++-+||.+-
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~--lRePSlGP~fG~KG 106 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA--LREPSLGPVFGIKG 106 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE--E----CHHHHCST-
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE--EecCCCCCccCccc
Confidence 368889988 349999999999999999999999988 67899999999984
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.33 E-value=0.18 Score=51.00 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.4
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDP 89 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dp 89 (449)
++-+..+|+.+.|..|+|||+++..+|...+. .|.+|+-| |+.-
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYI--dtE~ 140 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYI--DTEG 140 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEE--EcCC
Confidence 34456799999999999999999999876542 36799999 7764
No 273
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.33 E-value=0.21 Score=50.69 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=35.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-|.-+|+-+.|..|+||||+|..+...+.+.|..++.| |...+
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~I--D~e~~ 92 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFI--DAEHA 92 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEE--ESSS-
T ss_pred cccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEe--cCccc
Confidence 34578998999999999999999988888889999999 76554
No 274
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.31 E-value=0.06 Score=50.76 Aligned_cols=38 Identities=34% Similarity=0.383 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.++|..|+||||++.+++..+.. ..+.++ +.|.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i--~~D~ 42 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVII--SQDN 42 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEe--cccc
Confidence 4589999999999999999999877654 466777 6664
No 275
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.31 E-value=0.25 Score=50.63 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=35.2
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH----c--CCceEEEecCCCc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAM----A--GLSTCLVLHSQDP 89 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~----~--G~rvLLv~~d~Dp 89 (449)
++-+...|+.+.|..|+|||+++..+|+..+. . +.+|+.| |+.-
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyI--dTE~ 170 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYI--DTEG 170 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEE--EcCC
Confidence 34456799999999999999999999987753 1 3699999 7743
No 276
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.30 E-value=0.04 Score=54.77 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+++++++|..|+||||+|..+|..+. ....+ |.|-
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~----~~~~l--~~D~ 36 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP----KAVNV--NRDD 36 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEE--eccH
Confidence 578999999999999999999887762 45667 6664
No 277
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.23 E-value=0.061 Score=51.87 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH------------cCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAM------------AGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~------------~G~rvLLv 83 (449)
+.++.|.||+||||++..+|.+.|. .+.+|+.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi 47 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYL 47 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEE
Confidence 5688999999999999999999874 45678888
No 278
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.19 E-value=0.045 Score=48.50 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=25.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|++++|..|+||||+|..++..+ | ..++ |.|.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~--~~~i--~~D~ 32 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---G--APFI--DGDD 32 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---C--CEEE--eCcc
Confidence 57899999999999999998764 3 3456 7775
No 279
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.19 E-value=0.066 Score=59.28 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++.+++++|..|+||||+|.+++..+...|..+.++ |.|-
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l--~~D~ 498 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLL--DGDN 498 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEE--cChh
Confidence 478999999999999999999999998889888988 7764
No 280
>PRK08118 topology modulation protein; Reviewed
Probab=94.17 E-value=0.046 Score=49.99 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=18.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|++.|.+|+||||+|..++..+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999888665
No 281
>PRK10536 hypothetical protein; Provisional
Probab=94.13 E-value=0.049 Score=53.44 Aligned_cols=49 Identities=27% Similarity=0.267 Sum_probs=34.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCcc--hhhhhhhccC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDPT--AEYILNCKIG 100 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dps--l~d~~g~~~~ 100 (449)
..+++++|.-|+|||++|.++|...- ...++.+++ +.|. .++.+|.-.|
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI---~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV---TRPVLQADEDLGFLPG 125 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE---eCCCCCchhhhCcCCC
Confidence 35999999999999999999999643 445666666 3453 4555554433
No 282
>PF12846 AAA_10: AAA-like domain
Probab=94.10 E-value=0.078 Score=51.83 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=33.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+++.|+.|+||||++.++...++..|.+++++ |....
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~ 40 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGD 40 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCch
Confidence 57889999999999999999999999999999 76654
No 283
>PRK06547 hypothetical protein; Provisional
Probab=94.07 E-value=0.065 Score=49.39 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
.+.++.++|..|+||||+|..+|..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3678889999999999999999876
No 284
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.05 E-value=0.084 Score=48.95 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-.|.+|+|-| =||||.|.-+|++.+-+|+||+++
T Consensus 22 Gli~VYtGdG-KGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 22 GLVQVFTSSQ-RNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred CEEEEEeCCC-CCchHHHHHHHHHHhcCCCEEEEE
Confidence 5788999865 899999999999999999999999
No 285
>PTZ00035 Rad51 protein; Provisional
Probab=93.99 E-value=0.27 Score=50.25 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCcc-----hhhhhhhccCCCCeeecCCccee
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDPT-----AEYILNCKIGNSPVVCNSNLSAV 113 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dps-----l~d~~g~~~~~~p~~i~~~L~~~ 113 (449)
+-+...++.+.|..|+||||++..++..... .|.+++.| |+..+ +..++.. .+..+.++.+|+...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyI--dtE~~f~~eri~~ia~~-~g~~~~~~l~nI~~~ 190 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYI--DTEGTFRPERIVQIAER-FGLDPEDVLDNIAYA 190 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEE--EccCCCCHHHHHHHHHH-hCCChHhHhhceEEE
Confidence 3456799999999999999999998877652 46689999 77542 3333221 122233455666555
Q ss_pred ecC
Q 013114 114 RIE 116 (449)
Q Consensus 114 eid 116 (449)
...
T Consensus 191 ~~~ 193 (337)
T PTZ00035 191 RAY 193 (337)
T ss_pred ccC
Confidence 433
No 286
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.99 E-value=0.071 Score=48.96 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=25.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
+++||+.|+||||+...+...+...|.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 689999999999999999999987776664
No 287
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.98 E-value=0.25 Score=49.92 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMA------GLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~------G~rvLLv~~d~Dp 89 (449)
-+...++.+.|..|+|||+++..+|...+.. +.+|+.| |++-
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi--~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI--DTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEE--eCCC
Confidence 3457899999999999999999999887653 3589999 7765
No 288
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.95 E-value=0.1 Score=52.12 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv~~d~Dp 89 (449)
.+.|+-+.|..|+||||+|..++..+.+. +.+|.++ +.|.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi--~~D~ 102 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELI--TTDG 102 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEE--eccc
Confidence 45899999999999999999888888753 4579899 6664
No 289
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=93.93 E-value=0.083 Score=54.53 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=35.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
+++++-++|+.|+||||+...+...+.++|+||.+|-+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 36799999999999999999999999999999999944
No 290
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=93.92 E-value=0.08 Score=53.81 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=31.1
Q ss_pred cEEEEE--eCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITF--LGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~--~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+|.+ .+-||+|||+++..+|..+.++|+||.++
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 346666 46899999999999999999999999999
No 291
>PLN02348 phosphoribulokinase
Probab=93.89 E-value=0.097 Score=54.33 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
...||-+.|-.|+||||+|..++..+...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35888899999999999999999999754
No 292
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.89 E-value=0.093 Score=57.36 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCc
Q 013114 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDP 89 (449)
Q Consensus 43 ~~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dp 89 (449)
+...+...+|+++|-.|+||||+|.++|..+.. .|..+.++ |.|-
T Consensus 386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~l--D~D~ 431 (568)
T PRK05537 386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLL--DGDV 431 (568)
T ss_pred ccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEe--CCcH
Confidence 333444578999999999999999999999987 78888888 8774
No 293
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.052 Score=49.50 Aligned_cols=28 Identities=50% Similarity=0.566 Sum_probs=22.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
+|+++|+.|+||||+|.-+|-.+ |++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCcee
Confidence 67899999999999998888665 55543
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.86 E-value=0.033 Score=48.61 Aligned_cols=32 Identities=41% Similarity=0.508 Sum_probs=24.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++++.|..|+||||+|..++..+. ..++ |.|-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i--~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVI--SQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEE--EHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEE--eHHH
Confidence 689999999999999988875543 5556 5543
No 295
>PLN02796 D-glycerate 3-kinase
Probab=93.79 E-value=0.088 Score=53.79 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVL 84 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~ 84 (449)
..+-|+.++|..|+||||++.+++..+...|.++..++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~Is 135 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLS 135 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEE
Confidence 34688899999999999999999999988888888883
No 296
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.78 E-value=0.077 Score=45.43 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-----GLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-----G~rvLLv 83 (449)
..+++++.|+.|+|||+++..++..+... ..+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYV 43 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEE
Confidence 35789999999999999999999998764 4566655
No 297
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=93.77 E-value=0.24 Score=39.32 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCCCceEEEeecCCCeEEEEE-----CCeeeeecCCcccccCccceEEeCCEEEEEcC
Q 013114 387 KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-----GDQRRVIHLPPQIQGKVGGARFIERNLIVTMG 449 (449)
Q Consensus 387 ~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-----g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f~ 449 (449)
...+.+.+|++.++++++... ++.|.|++ +.|.-.+.|+..+..+...+++.++.+.|++.
T Consensus 8 ~v~i~v~~~~~~~~~v~v~~~--~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~ 73 (84)
T cd06466 8 SVTVTIYAKNVDKEDVKVEFN--EQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLK 73 (84)
T ss_pred EEEEEEEECCCCHHHCEEEEe--cCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEE
Confidence 567889999999999999985 88999975 25899999999999888889999999999873
No 298
>PRK04040 adenylate kinase; Provisional
Probab=93.73 E-value=0.068 Score=49.93 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
++++++++|..|+||||++..++..+. .|.++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 368999999999999999999998885 34444
No 299
>PLN02924 thymidylate kinase
Probab=93.72 E-value=0.15 Score=48.86 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+..+|++-|--|+||||.+..++.++..+|++|.++
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 4568999999999999999999999999999999766
No 300
>PRK12338 hypothetical protein; Provisional
Probab=93.71 E-value=0.076 Score=53.71 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.+++++|.+|+||||+|.++|..+ |.+. ++ ++|-
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l---~~~~-~~--~tD~ 38 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL---NIKH-LI--ETDF 38 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC---CCeE-Ec--cChH
Confidence 4799999999999999999999876 5554 45 5664
No 301
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.64 E-value=0.12 Score=47.96 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|++.|--|+||||++..++..+...|+.+...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 47899999999999999999999999999776654
No 302
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.63 E-value=0.095 Score=48.85 Aligned_cols=33 Identities=39% Similarity=0.469 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-|++|+|.| -||||.|.-+|+...-.|+||++|
T Consensus 30 li~V~TG~G-KGKTTAAlG~alRa~GhG~rv~vv 62 (198)
T COG2109 30 LIIVFTGNG-KGKTTAALGLALRALGHGLRVGVV 62 (198)
T ss_pred eEEEEecCC-CChhHHHHHHHHHHhcCCCEEEEE
Confidence 588999986 899999999999999999999999
No 303
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.61 E-value=0.097 Score=48.33 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=27.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-.|.+++|.| =||||.|.-+|+..+-.|.||+++
T Consensus 4 G~i~vytG~G-KGKTTAAlGlalRA~G~G~rV~iv 37 (172)
T PF02572_consen 4 GLIQVYTGDG-KGKTTAALGLALRAAGHGMRVLIV 37 (172)
T ss_dssp --EEEEESSS-S-HHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEEeCCC-CCchHHHHHHHHHHHhCCCEEEEE
Confidence 3688999876 799999999999999999999999
No 304
>PRK13946 shikimate kinase; Provisional
Probab=93.60 E-value=0.088 Score=48.73 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
++.|++.|-.|+||||++..+|..+ |... + |+|-.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L---g~~~--i--d~D~~~ 45 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML---GLPF--L--DADTEI 45 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCe--E--CcCHHH
Confidence 5789999999999999999999877 6664 5 888533
No 305
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.60 E-value=0.13 Score=50.61 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCK 98 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~ 98 (449)
+-+++.|..|+|||++|.++|. ..|.++..+ .+++ ..++++|..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~---~lg~~~~~i--~~~~~~~~~dllg~~ 67 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR---KRDRPVMLI--NGDAELTTSDLVGSY 67 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH---HhCCCEEEE--eCCccCCHHHHhhhh
Confidence 3456789999999999999986 348899988 6655 356777643
No 306
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.59 E-value=0.11 Score=52.20 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+-+++++|..|+||||+|..+|..+ |..+ ++ ++|.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l---~~~~-vi--~~D~ 126 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL---GIRS-VI--GTDS 126 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh---CCCE-EE--echH
Confidence 4688999999999999999999887 5554 56 6664
No 307
>PRK13947 shikimate kinase; Provisional
Probab=93.57 E-value=0.092 Score=47.51 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhh
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILN 96 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g 96 (449)
-|++.|..|+||||+|..+|..+ |.+. + |.|--+...+|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~--i--d~d~~~~~~~g 41 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGF--I--DTDKEIEKMTG 41 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCE--E--ECchhhhhhcC
Confidence 47889999999999999998776 6665 4 77654433333
No 308
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=93.56 E-value=0.077 Score=56.85 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=44.5
Q ss_pred CcEEEEEeCC----CCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhcc
Q 013114 48 STTLITFLGK----GGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 48 ~~rii~~~GK----GGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
.-++|++++- -|.||||++..|+.+|.+.|+++++. =-.||++-+||++-
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~--lRePSlGP~FGiKG 115 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA--IRQPSGGPTMNIKG 115 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE--EecCCcCCcCCccc
Confidence 3688999883 49999999999999999999999998 67899999999884
No 309
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.53 E-value=0.098 Score=57.97 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++++.|..|+||||+.+++...+.++|++||++
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~ 207 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVT 207 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5788999999999999999999999999999998
No 310
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.44 E-value=0.096 Score=49.75 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=26.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC-ceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGL-STCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~-rvLLv 83 (449)
..++++.|+-|+|||.+|.+.|+.+...|. +-+++
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii 54 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIII 54 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999998887653 34444
No 311
>PRK06749 replicative DNA helicase; Provisional
Probab=93.43 E-value=0.11 Score=54.83 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
....++++.|..|+|||+.+.++|...|++|++|+++ |...
T Consensus 184 ~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~f--SlEM 224 (428)
T PRK06749 184 QEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLF--SLEM 224 (428)
T ss_pred CCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEE--EeeC
Confidence 3457999999999999999999999999999999999 5444
No 312
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.39 E-value=0.077 Score=51.99 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
+..+++.+.|-||+||||+|.+++.....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~ 45 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRI 45 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccc
Confidence 45799999999999999999999877543
No 313
>PF13173 AAA_14: AAA domain
Probab=93.37 E-value=0.11 Score=45.01 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
+++++.|.-||||||++..++..+- ...+++.+ +.|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi--~~~ 38 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI--NFD 38 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceee--ccC
Confidence 6889999999999999999998777 66788888 665
No 314
>PRK07933 thymidylate kinase; Validated
Probab=93.32 E-value=0.13 Score=49.08 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=31.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|+|-|--|+||||.+..++.+|..+|++|.+.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 688999999999999999999999999999987
No 315
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.30 E-value=0.64 Score=44.42 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|-..+++.-|-.|+|||-++..++..+-+.|+++..+ ++.-
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yv--sTe~ 66 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYV--STEL 66 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEE--Eech
Confidence 4468999999999999999999999999999999999 6654
No 316
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.30 E-value=0.11 Score=44.30 Aligned_cols=29 Identities=38% Similarity=0.390 Sum_probs=24.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++.|..|+||||++..+|..+ |..++-+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccc
Confidence 5789999999999999999887 5666655
No 317
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.27 E-value=0.085 Score=49.36 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
||.++|..|+||||+|..++..+. .+.++ +.|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i--~~D 32 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVI--HQD 32 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEE--ccc
Confidence 477889999999999999988762 46777 665
No 318
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.26 E-value=0.086 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+||+++|-.|+||||+|-.++..+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4799999999999999999997665
No 319
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=93.21 E-value=0.11 Score=55.10 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=27.9
Q ss_pred EEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++++| ..||||||++++++.+|+++|+||...
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~f 34 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPF 34 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEE
Confidence 35555 569999999999999999999999887
No 320
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.21 E-value=0.076 Score=46.38 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
||+++|..|+||||+|..+|..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 321
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.20 E-value=0.12 Score=52.89 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=34.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH--HHcCCceEEEecCCCcch
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY--AMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l--A~~G~rvLLv~~d~Dpsl 91 (449)
.++++++|-.|+|||.+|.++|..+ ...|.+++++ ....++
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l--~~n~~l 43 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYL--CGNHPL 43 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEE--EecchH
Confidence 3689999999999999999999999 7788898888 544443
No 322
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.20 E-value=0.11 Score=53.14 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 59 GSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 59 GVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
|+|||++|+.+|..+.++|+|+|+|-+
T Consensus 137 g~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 137 GVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred ccchhHHHHHHHHHHHHcCCceEEEec
Confidence 699999999999999999999999944
No 323
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=93.17 E-value=0.093 Score=54.74 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE--ecC-CCcch-hhhhhhccCCCCeeecCCcceeecCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV--LHS-QDPTA-EYILNCKIGNSPVVCNSNLSAVRIET 117 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv--~~d-~Dpsl-~d~~g~~~~~~p~~i~~~L~~~eid~ 117 (449)
+|++..--.|+||||++..+..+|+++|++|=-. ..| .||+. ..+-|.+ .-||+-+-+..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~atG~~--------srNLD~~mm~~ 65 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAATGRP--------SRNLDSWMMGE 65 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhHhhCCc--------cCCCchhhcCH
Confidence 4555555679999999999999999998777544 123 36763 3333432 34666555553
No 324
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.17 E-value=0.13 Score=53.95 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
..+-|+-++|..|.||||++..+...+...|+++..|++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISi 248 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSI 248 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEE
Confidence 346888999999999999999998888778999999943
No 325
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.13 E-value=0.16 Score=54.36 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
++-+..+++++.|-.|+||||+|..++..-+++ |.+++.|+.+-.|
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~ 62 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP 62 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH
Confidence 344567999999999999999999999887776 9999999443333
No 326
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.13 E-value=0.096 Score=52.17 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=25.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGL 78 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~ 78 (449)
.-+++.|..|+||||+|.++|..+.+.|.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 35788899999999999999999998775
No 327
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.08 E-value=0.14 Score=43.08 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH--cCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAM--AGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~--~G~rvLLv 83 (449)
.+++.|.-|+|||+++.+++..+.. .+.+++++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 4678899999999999999999987 45788887
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.06 E-value=0.095 Score=47.50 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+++++.|..|+||||+..++...+++.+.-++-+
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~ 58 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISI 58 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 59999999999999999999999998875446655
No 329
>PLN02759 Formate--tetrahydrofolate ligase
Probab=93.05 E-value=0.12 Score=55.86 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=44.2
Q ss_pred CcEEEEEeCC----CCCcHHHHHHHHHHHHHH-cCCceEEEecCCCcchhhhhhhcc
Q 013114 48 STTLITFLGK----GGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 48 ~~rii~~~GK----GGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
.-++|++++- -|.||||++..|+.+|.+ .|+++++. =-.||++-+||++-
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~--lRePSlGP~FGiKG 122 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC--LRQPSQGPTFGIKG 122 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE--eecCCcCCcCCccc
Confidence 3588888883 499999999999999998 89999998 67899999999884
No 330
>PTZ00301 uridine kinase; Provisional
Probab=93.01 E-value=0.2 Score=47.79 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCC-ceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-AGL-STCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-~G~-rvLLv~~d~D 88 (449)
..||-++|-.|+||||+|.+++..+.. .|- .++++ ..|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi--~~D 42 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVI--CED 42 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEe--CCC
Confidence 478889999999999999999988854 343 46677 555
No 331
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.00 E-value=0.15 Score=55.01 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
-+.-+++++.|-.|+||||+|.+++...+++ |.+++.++.+-++
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 3457999999999999999999999988888 9999999444344
No 332
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.89 E-value=0.082 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
++++.|..|+||||+|..+|..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998766
No 333
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.84 E-value=0.12 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..++++.|..|+||||+|..+|..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 334
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.76 E-value=0.12 Score=47.55 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=23.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|.++|-.||||||+|-.++ +.|+++.=+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~i~l 30 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKVIEL 30 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCceeeH
Confidence 57889999999999998776 667777643
No 335
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=92.70 E-value=1.1 Score=47.20 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dps 90 (449)
...+++..+-.|.|||+.|.++|..+|.. ++.|.+. |.-.+
T Consensus 195 ~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iF--SLEM~ 236 (435)
T COG0305 195 PGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIF--SLEMS 236 (435)
T ss_pred cCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEE--EccCC
Confidence 35788999999999999999999999985 5668999 65543
No 336
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=92.68 E-value=4.4 Score=43.78 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=35.3
Q ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++.||++| -.|.||-.+|+.++..|-.+|++|-.+ -.||=
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~--K~DpY 42 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTII--KIDPY 42 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEE--eeccc
Confidence 36788887 479999999999999999999999999 78874
No 337
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=92.63 E-value=0.19 Score=55.36 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
+++++-+.|+-|+||||+...+...|.++|+||.+|-+
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 47899999999999999999999999999999999954
No 338
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.58 E-value=0.23 Score=53.56 Aligned_cols=42 Identities=24% Similarity=0.157 Sum_probs=36.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
-+...++++.|..|+|||+++..++...++.|.+++.+ +++-
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yi--s~e~ 311 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLF--AFEE 311 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEE--EecC
Confidence 34567888899999999999999999999999999999 5543
No 339
>PRK05380 pyrG CTP synthetase; Validated
Probab=92.57 E-value=3.5 Score=44.57 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=36.6
Q ss_pred CcEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|++.||+|| -.|.||-.+|+.++..|-.+|++|-.+ -.||=
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~--K~DpY 43 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ--KLDPY 43 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEE--eeccc
Confidence 478889988 479999999999999999999999999 77773
No 340
>PRK02496 adk adenylate kinase; Provisional
Probab=92.51 E-value=0.13 Score=47.35 Aligned_cols=25 Identities=48% Similarity=0.699 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|+| +++.|..|+||||+|..+|..+
T Consensus 1 ~~~-i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTR-LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeE-EEEECCCCCCHHHHHHHHHHHh
Confidence 456 5668899999999999998766
No 341
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.50 E-value=0.11 Score=46.72 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=24.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+++.|..|+||||+|..++..+ | ..++ |.|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l---~--~~~v--~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL---G--AKFI--EGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc---C--CeEE--eCcc
Confidence 4678999999999999999876 3 3456 6665
No 342
>PRK06851 hypothetical protein; Provisional
Probab=92.34 E-value=0.29 Score=50.57 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=37.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++++++|-.|+||||+...++..+.++|++|-.+-.+.||
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 479999999999999999999999999999998776557888
No 343
>PRK13975 thymidylate kinase; Provisional
Probab=92.34 E-value=0.15 Score=47.19 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
|.++|++.|--|+||||+|..+|..+-
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999998884
No 344
>PRK01184 hypothetical protein; Provisional
Probab=92.33 E-value=0.16 Score=46.60 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
|.+++++|..|+||||+|. + +.+.|..++
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~---~~~~g~~~i 29 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-I---AREMGIPVV 29 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-H---HHHcCCcEE
Confidence 4689999999999999864 3 345676664
No 345
>CHL00181 cbbX CbbX; Provisional
Probab=92.33 E-value=0.14 Score=51.02 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGL 78 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~ 78 (449)
.-+++.|..|+||||+|.++|..+...|.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 34788999999999999999999887664
No 346
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.30 E-value=0.14 Score=46.40 Aligned_cols=42 Identities=31% Similarity=0.357 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILN 96 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g 96 (449)
|++.++++|-.|+||||+|..+|..+ |.. .+ |.|--+...+|
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~l---g~~--~~--d~D~~~~~~~g 42 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQAL---GYR--FV--DTDQWLQSTSN 42 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CCC--EE--EccHHHHHHhC
Confidence 35667889999999999999998776 544 45 77764444433
No 347
>PRK13948 shikimate kinase; Provisional
Probab=92.26 E-value=0.19 Score=46.76 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNC 97 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~ 97 (449)
..+.|+++|--|+||||++..+|..+ |... + |+|.-+...+|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l---g~~~--i--D~D~~ie~~~g~ 51 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL---MLHF--I--DTDRYIERVTGK 51 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCCE--E--ECCHHHHHHHhC
Confidence 46788899999999999999988776 5544 5 888655555553
No 348
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.25 E-value=0.15 Score=47.05 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=24.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
||.++|..|+||||++..++. .|..|+ |+|-
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i----~~D~ 31 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVI----DADK 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEE----ecCH
Confidence 578999999999999988875 577654 7664
No 349
>PRK14531 adenylate kinase; Provisional
Probab=92.24 E-value=0.15 Score=47.08 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|++.|++.|..|+||||+|..+|..+
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567889999999999999998775
No 350
>PRK14527 adenylate kinase; Provisional
Probab=92.24 E-value=0.15 Score=47.42 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+..++++.|..|+||||.|..+|..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998666
No 351
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.23 E-value=0.22 Score=46.72 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
+++++|..|+||||+..+++..+... +.+++.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 68999999999999999998888764 4455554
No 352
>PRK07261 topology modulation protein; Provisional
Probab=92.21 E-value=0.13 Score=47.20 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|++.|.+|+||||+|..++..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6778999999999999987543
No 353
>PRK03839 putative kinase; Provisional
Probab=92.13 E-value=0.15 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
.|++.|-.|+||||+|..+|..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999888776
No 354
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.11 E-value=0.19 Score=47.58 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=27.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
||.+|-+||+-|+||||+|-.+ ++.|..|+ |+|-
T Consensus 1 ~~~iIglTG~igsGKStva~~~----~~~G~~vi----daD~ 34 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKIL----AELGFPVI----DADD 34 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHH----HHcCCeEE----EccH
Confidence 5789999999999999998544 45677765 7774
No 355
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.09 E-value=0.15 Score=47.67 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=28.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++++++.|-.|.||||++..+...+. +...+.| |.|-
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i--~~D~ 51 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVI--DADE 51 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE---GGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEE--ehHH
Confidence 4469999999999999999998876665 5677777 7774
No 356
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.05 E-value=0.15 Score=49.83 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
.-+++.|..|+||||+|.++|..+.+.|
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 4467899999999999999999987655
No 357
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.01 E-value=0.15 Score=42.89 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
|.+.|+.|+|||++|..+|..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999864
No 358
>PLN02200 adenylate kinase family protein
Probab=92.00 E-value=0.2 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.++++.|..|+||||+|..+|..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998765
No 359
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.97 E-value=0.24 Score=49.77 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=34.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDP 89 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dp 89 (449)
+-+...|+.+.|..|+||||++..+|...+. .+.+|+.| |+.-
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi--~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI--DTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEE--ECCC
Confidence 3355799999999999999999999988763 23389999 7654
No 360
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.92 E-value=0.48 Score=47.14 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 42 TDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 42 ~~~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
.+++-+..+|+=+-|..|+||||+|..++......|.++..| |+-.+
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fI--DtE~~ 99 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFI--DTEHA 99 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEE--eCCCC
Confidence 335557789999999999999999999999999999999999 77554
No 361
>PRK13973 thymidylate kinase; Provisional
Probab=91.91 E-value=0.28 Score=46.52 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++|+|-|--|+||||.+..++.+|..+|++|...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 7889999999999999999999999999999766
No 362
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=91.89 E-value=0.16 Score=54.83 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=43.9
Q ss_pred CcEEEEEeCC----CCCcHHHHHHHHHHHHH-HcCCceEEEecCCCcchhhhhhhcc
Q 013114 48 STTLITFLGK----GGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 48 ~~rii~~~GK----GGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
.-++|++++- -|.||||++..++.+|. +.|+++++. =-.||++-.||++-
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~--lRePSlGP~FGiKG 121 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC--IRQPSQGPTFGIKG 121 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE--EecCCcCCcCCccc
Confidence 3588899884 49999999999999999 789999988 67899999999884
No 363
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=91.88 E-value=0.21 Score=46.76 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
||+++.++|.-|+||||++..++. .|..+ + |+|-
T Consensus 1 ~~~~i~ltG~~gsGKst~~~~l~~----~g~~~--i--~~D~ 34 (194)
T PRK00081 1 MMLIIGLTGGIGSGKSTVANLFAE----LGAPV--I--DADA 34 (194)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH----cCCEE--E--EecH
Confidence 478999999999999999987764 47654 5 7774
No 364
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.78 E-value=0.16 Score=49.57 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.|++.+|..||||||+|.-+|..| |.+-+ + ++|-
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rL---gI~~v-i--sTD~ 123 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRL---GIRSV-I--STDS 123 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHc---CCcee-e--cchH
Confidence 5899999999999999999988766 55543 5 6774
No 365
>PRK10490 sensor protein KdpD; Provisional
Probab=91.66 E-value=7.8 Score=44.88 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=29.6
Q ss_pred cEEEEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-|+=+|.| -.|||||+...+-|..+.++|..|++=
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g 58 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVG 58 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 35556666 689999999999999999999999754
No 366
>PRK13695 putative NTPase; Provisional
Probab=91.65 E-value=0.27 Score=44.82 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=26.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
++++|.+|+||||++..++..+...|.++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 577899999999999999888877888865
No 367
>PRK14528 adenylate kinase; Provisional
Probab=91.54 E-value=0.19 Score=46.66 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+++.|..|+||||+|..+|..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999988665
No 368
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=91.52 E-value=0.19 Score=50.79 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 57 KGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 57 KGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-||+|||.++..+|..+.++|+++.++
T Consensus 38 vGGTGKTP~v~~La~~l~~~G~~~~Il 64 (311)
T TIGR00682 38 VGGTGKTPVVVWLAELLKDRGLRVGVL 64 (311)
T ss_pred cCCcChHHHHHHHHHHHHHCCCEEEEE
Confidence 599999999999999999999999999
No 369
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.51 E-value=0.18 Score=46.10 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
++++++|..|+||||++-.++..+...|
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~ 29 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDP 29 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCC
Confidence 5789999999999999999988764433
No 370
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.51 E-value=0.22 Score=51.41 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...++++|.||+|||++-.++-..+...|+.|+++
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 46789999999999999999999988888888876
No 371
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.51 E-value=0.2 Score=50.53 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++++++++|..|+||||+|..+|..+ ...+| ++|-
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~-----~~~ii--s~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL-----NGEII--SADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC-----CCcEE--eccc
Confidence 45899999999999999999998765 23456 6664
No 372
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=91.48 E-value=0.25 Score=52.24 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|++..-..|+||||+++.++.++.++|.+|--.
T Consensus 2 ~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~ 36 (433)
T PRK13896 2 KGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPA 36 (433)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEE
Confidence 34444444579999999999999999999999776
No 373
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.15 Score=51.33 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc----CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA----GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~----G~rvLLv 83 (449)
.|++++.|..|+||||++-|+|..++-+ -++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 6999999999999999999999999753 3444555
No 374
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.37 E-value=0.23 Score=51.00 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
..+|+.+.|..|+||||+|.++|..+.+
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4699999999999999999999999976
No 375
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=91.35 E-value=0.14 Score=53.48 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=43.7
Q ss_pred cEEEEEeCC----CCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhcc
Q 013114 49 TTLITFLGK----GGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 49 ~rii~~~GK----GGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
-++|++++- -|.||||++.-|+.+|.+.|+++.+. =-.||++-.||++-
T Consensus 52 gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~a--lRePSlGP~fGiKG 104 (554)
T COG2759 52 GKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAIIA--LREPSLGPVFGIKG 104 (554)
T ss_pred ceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheEE--eccCCcCCcccccc
Confidence 588888874 49999999999999999999999988 67899999999984
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.34 E-value=1.1 Score=40.48 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++++|.-|+||||+-..+... ..|+++.++
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~--~~~~~~~~i 32 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVI 32 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--ccCCcEEEE
Confidence 6789999999999999887754 258888877
No 377
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=91.28 E-value=0.27 Score=46.09 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+++.++|.-|+||||+|..++..+ |..++ |+|-
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i----~~D~ 34 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPIL----DADI 34 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEe----eCcH
Confidence 578999999999999998876432 76664 8875
No 378
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.28 E-value=0.24 Score=48.53 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...++++|..|+||||+..++...+...+.+++.+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~i 161 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTI 161 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEe
Confidence 58999999999999999999988887777888888
No 379
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.24 E-value=0.18 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+++++.|+.|+||||++..++..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 689999999999999998888654
No 380
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.11 E-value=0.29 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv 83 (449)
.-.++|.|..|||||.+|-++|..+- ....+.+.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 56789999999999999999999998 455566666
No 381
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.10 E-value=0.35 Score=46.06 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
|=+.+.|+.|+|||++++.+...+. +.|.+++++ |..-
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~--D~~G 62 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIF--DPHG 62 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEE--cCCC
Confidence 3345679999999999999999999 889999999 6543
No 382
>PLN02327 CTP synthase
Probab=91.07 E-value=6.3 Score=42.86 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=35.3
Q ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|+.||++| -.|.||-.+|+.++..|-.+|++|..+ -.||=
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~--K~DPY 42 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSI--KIDPY 42 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeee--ecccc
Confidence 37788887 479999999999999999999999999 77873
No 383
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=91.06 E-value=0.22 Score=50.98 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=29.3
Q ss_pred EEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|.+.- -||+|||-++..+|..+.++|+|+.++
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 92 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 3444443 699999999999999999999999999
No 384
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.00 E-value=0.42 Score=45.50 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+..+|+|-|-=|+||||.+..++.++.++|++|++.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 357899999999999999999999999999999886
No 385
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.98 E-value=0.2 Score=45.26 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+++|-.|+||||+|..+| ...|.+=+=+
T Consensus 10 ILvtGTPG~GKstl~~~la---e~~~~~~i~i 38 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLA---EKTGLEYIEI 38 (176)
T ss_pred EEEeCCCCCCchhHHHHHH---HHhCCceEeh
Confidence 5678999999999999888 3346665544
No 386
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.96 E-value=0.24 Score=52.62 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||+++.++|..+.+.|.+|+-+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi 175 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYV 175 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Confidence 4567789999999999999999999999999988
No 387
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=90.87 E-value=0.83 Score=46.27 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=33.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHH---cC---CceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAM---AG---LSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~---~G---~rvLLv~~d~Dp 89 (449)
-+...|+.+.|..|+||||++..+|...+. .| .+|+.+ |+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyI--dtE~ 140 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYI--DTEG 140 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEE--ECCC
Confidence 355799999999999999999999875442 33 488999 7765
No 388
>PLN02748 tRNA dimethylallyltransferase
Probab=90.81 E-value=0.38 Score=51.29 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 43 ~~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.-....+++++.|..|+||||+|..+|..+ ..-+| ++|-
T Consensus 16 ~~~~~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii--~~Ds 55 (468)
T PLN02748 16 PKQKGKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEII--NADS 55 (468)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEE--cCch
Confidence 3334556799999999999999999998765 24567 7774
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.77 E-value=0.32 Score=48.82 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv 83 (449)
.+.++++|..|+||||+..++...+.+. +.|++.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti 168 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII 168 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE
Confidence 4577899999999999999999888774 7888877
No 390
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=90.77 E-value=3 Score=44.36 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=34.6
Q ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++.||+|| -.|.||-.+||++|..|..+|++|-.+ -.||
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~--KlDP 41 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ--KLDP 41 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEE--eccc
Confidence 36788887 469999999999999999999999999 7777
No 391
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=90.68 E-value=0.19 Score=48.34 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.--++|.|..|+||||+|.-+|..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred cceEEEECCCccchhHHHHHHHhccC
Confidence 34568899999999999998886653
No 392
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=90.66 E-value=0.24 Score=52.52 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.+++++|-.|+||||+|+.+|..+ |... ++ ++|-
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l---g~~~-ii--~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL---GITR-IV--STDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CCcE-Ee--ehhH
Confidence 36999999999999999999998765 4433 56 6664
No 393
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.61 E-value=0.28 Score=51.55 Aligned_cols=30 Identities=37% Similarity=0.406 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGL 78 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~ 78 (449)
.+=|++.|..|.||||.|+|+|-.++++|+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 456889999999999999999999999998
No 394
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=90.60 E-value=11 Score=40.49 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEEecCCC--cchHHHHHHHH
Q 013114 256 EIWDAMDRMLERGSSALAEPHKFGCFLVMNPNN--RTSVNSALRYW 299 (449)
Q Consensus 256 ~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~PE~--~~~i~Ea~r~~ 299 (449)
.++..+-+++|+.-.. ..-+.|.|..|++|.+ .-++.++.+.+
T Consensus 297 svfs~l~~LlERaG~~-~~GSITai~tVl~~gdD~tdPI~d~~~si 341 (494)
T CHL00060 297 TLSTEMGSLQERITST-KEGSITSIQAVYVPADDLTDPAPATTFAH 341 (494)
T ss_pred CHHHHhHHHHHhccCC-CCCCeeEEEEEECCCCCCCCcchHhhhhh
Confidence 3777888888876653 5788999999999965 23355555544
No 395
>PRK13764 ATPase; Provisional
Probab=90.54 E-value=0.34 Score=53.20 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.++++|..|+||||++++++..+...|+.|+-+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~Ti 291 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTM 291 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence 46689999999999999999999999888777666
No 396
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=90.54 E-value=0.51 Score=46.63 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCc--eEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLS--TCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~r--vLLv~~d~Dp 89 (449)
+.+-||...|.-||||||+|..++..+++.+.. |-+| -+|.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lv--pmDG 122 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLV--TMDG 122 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEE--eccc
Confidence 446788888999999999999999999998776 8888 6664
No 397
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.51 E-value=0.37 Score=36.88 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.+.+++|+.|+||||+=-|+-..+-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4789999999999999888766553
No 398
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=90.46 E-value=0.25 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=30.1
Q ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+|.++. -||+|||-++..+|.++.++|+++.++
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~Il 71 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAIL 71 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEE
Confidence 34555543 699999999999999999999999999
No 399
>PRK00625 shikimate kinase; Provisional
Probab=90.45 E-value=0.3 Score=45.03 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhh
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEY 93 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d 93 (449)
.|++.|-.|+||||++-.+|..+ |... + |+|.-+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~--i--d~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPF--F--DTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCE--E--EhhHHHHH
Confidence 37888999999999999998776 5554 4 77754433
No 400
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.44 E-value=0.24 Score=48.10 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
..++++.|..|+||||++..++..+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 468899999999999999999877653
No 401
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.41 E-value=0.33 Score=46.46 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..||-++|-+|+||||+|..++..+-.. ++.++ +.|
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I--~~D 43 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVI--SLD 43 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEe--ecc
Confidence 4788899999999999999998887644 88888 554
No 402
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.39 E-value=0.27 Score=51.31 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=30.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv 83 (449)
..+++.|+.|+|||+++.++|..+.++ |.+|+-+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 467889999999999999999999887 7888888
No 403
>PRK14530 adenylate kinase; Provisional
Probab=90.37 E-value=0.28 Score=46.44 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..|++.|..|+||||+|..+|..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778999999999999998776
No 404
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=0.19 Score=55.35 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=26.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
-+|++|+|..|||||+++-++|.+|-+.=
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 58999999999999999999999996543
No 405
>PRK14532 adenylate kinase; Provisional
Probab=90.03 E-value=0.26 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
+++.|..|+||||+|..+|..+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6678999999999999998544
No 406
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.97 E-value=0.32 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|+ |++.|..|+||||+|..+|..+
T Consensus 7 mr-Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 7 LK-IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHh
Confidence 56 5668889999999999887665
No 407
>PRK08356 hypothetical protein; Provisional
Probab=89.86 E-value=0.35 Score=45.10 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
..+++++|+.|+||||+|-.++ +.|..+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~----~~g~~~ 32 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE----EKGFCR 32 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH----HCCCcE
Confidence 3578999999999999998884 357763
No 408
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.81 E-value=0.3 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
..++++.|..|+||||++..+|..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999998654
No 409
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.74 E-value=0.62 Score=43.83 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++.++|--|+||||+-.+++..+. .++++.++ ..|+
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~--~~~~ 59 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVI--EGDV 59 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEE--ECCC
Confidence 78999999999999999999887764 46799988 5443
No 410
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=89.74 E-value=1.4 Score=45.06 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=34.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCc
Q 013114 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDP 89 (449)
Q Consensus 45 ~~~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dp 89 (449)
+-+...|+.+.|..|+|||++|..+|...+. .+.+|+.| |+.-
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyI--dtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYI--DTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEE--ECCC
Confidence 3355799999999999999999999876552 12489999 7765
No 411
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.72 E-value=0.38 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA 70 (449)
..++++++|..|+||||++..++
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999987765
No 412
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=89.71 E-value=0.45 Score=56.44 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=26.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
..+++.+.|.||+||||+|.+++..++..-
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 368999999999999999999998887753
No 413
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.69 E-value=0.3 Score=44.93 Aligned_cols=22 Identities=50% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|++.|..|+||||+|..+|..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6788999999999999998764
No 414
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.64 E-value=0.34 Score=42.71 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=22.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
|++.|..|+||||+|..+|..+ |.+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLPFV 28 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEE
Confidence 6788999999999999998877 65543
No 415
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.63 E-value=0.31 Score=45.46 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHH-HHHHHHcCCceEE
Q 013114 51 LITFLGKGGSGKTTSAVFA-AQHYAMAGLSTCL 82 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaal-A~~lA~~G~rvLL 82 (449)
|.+++|+.|+|||+.|+.. ....-++|.+|..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 7899999999999999988 6666667877653
No 416
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.59 E-value=0.34 Score=51.39 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv 83 (449)
..-+++.|+.|+|||+++.++|..+.+. |.+|+-+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3568899999999999999999999887 7888888
No 417
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.56 E-value=0.52 Score=43.19 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=29.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILN 96 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g 96 (449)
.+.|++.|..|+||||++..+|..+ |.+ .+ |+|-.+....|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l---~~~--~v--d~D~~i~~~~g 44 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL---NME--FY--DSDQEIEKRTG 44 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc---CCc--EE--ECCchHHHHhC
Confidence 3468888999999999999998775 444 45 77754443333
No 418
>PLN02422 dephospho-CoA kinase
Probab=89.55 E-value=0.42 Score=46.31 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=27.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+++.++|.-|+||||++..++ +.|..+ + |+|-
T Consensus 1 M~~igltG~igsGKstv~~~l~----~~g~~~--i--daD~ 33 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFK----SSGIPV--V--DADK 33 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HCCCeE--E--ehhH
Confidence 4689999999999999998877 468776 4 8874
No 419
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=89.52 E-value=0.37 Score=43.38 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~ 72 (449)
|.++|--|+||||++.++|..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 467788889999999999966
No 420
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=89.49 E-value=0.48 Score=44.64 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=26.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|.++.++|.-|+||||++..++ ..|..+ + |+|-
T Consensus 1 m~~igitG~igsGKst~~~~l~----~~g~~v--i--d~D~ 33 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLS----SEGFLI--V--DADQ 33 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HCCCeE--E--eCcH
Confidence 4689999999999999998887 358765 5 7773
No 421
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=89.49 E-value=0.51 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++.+++|..|+||||+..++...+.+.|++|.++
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 46899999999999999999988888889999988
No 422
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.49 E-value=0.56 Score=51.93 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 43 ~~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
+...|..+|++.+|..|-||||+|.-+|. +.||+|+=|-.|-|
T Consensus 320 ~s~RP~kKilLL~GppGlGKTTLAHViAk---qaGYsVvEINASDe 362 (877)
T KOG1969|consen 320 PSKRPPKKILLLCGPPGLGKTTLAHVIAK---QAGYSVVEINASDE 362 (877)
T ss_pred ccCCCccceEEeecCCCCChhHHHHHHHH---hcCceEEEeccccc
Confidence 44556699999999999999999987764 46999997743333
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.46 E-value=0.46 Score=43.69 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=25.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++++|..|+|||+.|..+|.. .|.+++.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~ 30 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYI 30 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEE
Confidence 4788999999999999998765 67788888
No 424
>PRK04182 cytidylate kinase; Provisional
Probab=89.44 E-value=0.33 Score=43.87 Aligned_cols=23 Identities=48% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
+|+++|.-|+||||+|..+|..+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68889999999999999998765
No 425
>PLN03025 replication factor C subunit; Provisional
Probab=89.41 E-value=0.4 Score=48.37 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=25.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++|.|..|+||||+|.++|..+-..++...++
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 57899999999999999999986655544444
No 426
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=89.35 E-value=0.49 Score=48.89 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
.-++-++|..|+||||++.++...+..+ +||.++-+
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 4688899999999999999999999999 99999954
No 427
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.32 E-value=0.44 Score=46.94 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+++++|..|+||||+..++...+...+.+++.+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti 114 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE
Confidence 56899999999999999999888887777788777
No 428
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.02 E-value=0.42 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
.+++++++|..|+||||++-.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999988654
No 429
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=88.99 E-value=0.6 Score=47.48 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCK 98 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~ 98 (449)
+-+++.|..|+||||++.++|..+ |.+..-|..+.|....|++|..
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence 457889999999999999999877 4566666334444567777754
No 430
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=88.91 E-value=0.52 Score=46.23 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=50.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCcc-----hhhhhhhccCCCCeeecCCcceeec
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDPT-----AEYILNCKIGNSPVVCNSNLSAVRI 115 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dps-----l~d~~g~~~~~~p~~i~~~L~~~ei 115 (449)
+...|.=+.|..|+|||.++..+|+..+- .+.+|+.| |++-+ +..+... .+.++.++.+|+....+
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyi--dTe~~f~~~Rl~~i~~~-~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYI--DTEGTFSPERLQQIAER-FGLDPEEILDNIFVIRV 112 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEE--ESSSSS-HHHHHHHHHH-TTS-HHHHHHTEEEEE-
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEE--eCCCCCCHHHHHHHhhc-cccccchhhhceeeeec
Confidence 34679999999999999999999887652 36789999 77642 4444321 12233456677776665
Q ss_pred CchhhhhhhHHHH
Q 013114 116 ETTKMFLEPLNWL 128 (449)
Q Consensus 116 d~~~~~~~~~~~~ 128 (449)
-....+.+....+
T Consensus 113 ~~~~~l~~~L~~l 125 (256)
T PF08423_consen 113 FDLEELLELLEQL 125 (256)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444433
No 431
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=88.82 E-value=0.36 Score=45.52 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=18.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|++.|..|+||||+|..+|..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999988544
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.77 E-value=0.4 Score=44.69 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+++++.|..|+||||++..++..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35799999999999999999998765
No 433
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=88.74 E-value=0.42 Score=44.63 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
+.++++++|+.||||||+..++=... +.+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~---~l~~S 33 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD---KLRFS 33 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc---CeEEE
Confidence 35899999999999999998875444 44444
No 434
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=88.70 E-value=0.56 Score=41.94 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcC--CceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAG--LSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G--~rvLLv 83 (449)
+..++.|..|+|||++++..+......+ .+++++
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~ 60 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVL 60 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEE
Confidence 6778999999999998888888887765 788877
No 435
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.59 E-value=0.43 Score=50.54 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv 83 (449)
-+++.|+.|+|||+++.++|..+.+. |.+|+.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 48889999999999999999999875 6788888
No 436
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.43 E-value=3.4 Score=42.83 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
.|+ .++|-.|+||||++..+|..+......|
T Consensus 134 QR~-LIvG~pGtGKTTLl~~la~~i~~~~~dv 164 (380)
T PRK12608 134 QRG-LIVAPPRAGKTVLLQQIAAAVAANHPEV 164 (380)
T ss_pred ceE-EEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 455 4456668999999999999998764333
No 437
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.32 E-value=0.45 Score=42.67 Aligned_cols=27 Identities=44% Similarity=0.539 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
+|+++|-.|+||||+|..+|..+ |..+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~~ 28 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLKL 28 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCce
Confidence 78999999999999999998764 5553
No 438
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=88.22 E-value=0.42 Score=43.11 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLS 79 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~r 79 (449)
+=+++.|+.|+||||+|.++ .++|.+
T Consensus 15 ~gvLi~G~sG~GKStlal~L----~~~g~~ 40 (149)
T cd01918 15 IGVLITGPSGIGKSELALEL----IKRGHR 40 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHH----HHcCCe
Confidence 66899999999999998654 456754
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.12 E-value=0.47 Score=44.00 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~ 72 (449)
+++.|..|+||||.|..+|..
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456688899999999999876
No 440
>PRK00279 adk adenylate kinase; Reviewed
Probab=88.09 E-value=0.46 Score=44.95 Aligned_cols=22 Identities=45% Similarity=0.774 Sum_probs=18.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|++.|..|+||||+|..+|..+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678889999999999887654
No 441
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.09 E-value=0.36 Score=44.53 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNC 97 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~ 97 (449)
++-|++.|--|+||||+.-++|..|.-. .+ |+|.-+....|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~--D~D~~Ie~~~g~ 43 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLP-----FI--DTDQEIEKRTGM 43 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCC-----cc--cchHHHHHHHCc
Confidence 3456777888999999999999877543 45 999766555553
No 442
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=88.03 E-value=0.73 Score=49.31 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=40.6
Q ss_pred eEEEEEecCCCcchHHHHHH----HHHHHHHcCCcccEEEEecCccc-cHHHHHHHHHhcCCCCeeeccC
Q 013114 278 FGCFLVMNPNNRTSVNSALR----YWGCTIQAGAQVAGAICTASPHL-DEESAERVRKNFSPLPLSFLPH 342 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r----~~~~L~~~Gi~V~~vvvN~~~~~-q~~~l~~i~~~F~~lpi~~vP~ 342 (449)
.-++||+... .+++.-+.- +..+|+..++++.|||+|+-... -...+.++-+. .++|++-+|.
T Consensus 351 ~PVILV~~~~-~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~-~gvpVLG~~~ 418 (476)
T PRK06278 351 FPVYIVSSCS-KSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAEN-SNINLIGVGK 418 (476)
T ss_pred CCEEEEEcCC-CChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHh-cCCCEEEecc
Confidence 4679999998 688655443 34556667999999999953311 11223444444 4788887765
No 443
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=87.98 E-value=3.7 Score=40.80 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=25.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.|+.+|+|.| +||||++..++...+.+...++++
T Consensus 70 Qr~~If~~~G-~GKTtLa~~i~~~i~~~~~~~~V~ 103 (274)
T cd01133 70 GKIGLFGGAG-VGKTVLIMELINNIAKAHGGYSVF 103 (274)
T ss_pred CEEEEecCCC-CChhHHHHHHHHHHHhcCCCEEEE
Confidence 6888887764 999999999999888653334333
No 444
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=87.91 E-value=0.58 Score=44.73 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|+.++.+.|..|+||||++..+|..+
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 445
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=87.88 E-value=0.54 Score=44.49 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHc--CC-ceEEEecCCC
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMA--GL-STCLVLHSQD 88 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~--G~-rvLLv~~d~D 88 (449)
+++.-+-+|.|+|.-|+||||++.|+-..+.++ |. ++.-+ |.|
T Consensus 26 ~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~--SvD 71 (282)
T KOG2878|consen 26 DGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATI--SVD 71 (282)
T ss_pred CCCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEE--Eec
Confidence 334447899999999999999999999999886 44 66666 555
No 446
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=87.85 E-value=28 Score=37.26 Aligned_cols=45 Identities=9% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCceEEEEEecCCC--cchHHHHHHHHH
Q 013114 256 EIWDAMDRMLERGSSAL-AEPHKFGCFLVMNPNN--RTSVNSALRYWG 300 (449)
Q Consensus 256 ~~~~~l~~~~~~~~~~L-~dp~~t~v~LVt~PE~--~~~i~Ea~r~~~ 300 (449)
.++..+-+++|+.-..- ..-+.|.|..|++|.+ .-++.++.+.+.
T Consensus 273 svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD~~dPI~d~~~sIl 320 (458)
T TIGR01041 273 YMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDITHPIPDLTGYIT 320 (458)
T ss_pred cHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCCCCCchHHhhhhhc
Confidence 37778888888765432 2458899999999965 334666655543
No 447
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=87.75 E-value=26 Score=37.53 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCceEEEEEecCCC--cchHHHHHHHH
Q 013114 256 EIWDAMDRMLERGSSAL-AEPHKFGCFLVMNPNN--RTSVNSALRYW 299 (449)
Q Consensus 256 ~~~~~l~~~~~~~~~~L-~dp~~t~v~LVt~PE~--~~~i~Ea~r~~ 299 (449)
.++..+-+++|+.-..- ..-+.|.+..|++|.+ .-++.++.+.+
T Consensus 275 ~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD~~dpI~d~~~sI 321 (460)
T PRK04196 275 YMYTDLATIYERAGRIKGKKGSITQIPILTMPDDDITHPIPDLTGYI 321 (460)
T ss_pred cHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCCCCCchhhhhhhh
Confidence 37778888888765432 2457899999999965 23455555544
No 448
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=87.71 E-value=0.7 Score=46.23 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGL 78 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~ 78 (449)
.++++++++|..|+||||++..++ ..|+
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~----~~g~ 31 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE----DLGY 31 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH----HcCC
Confidence 457899999999999999999885 5575
No 449
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=87.66 E-value=0.34 Score=42.64 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=26.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhcc
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
++.-|-.|+||||++.++|..+...=.|+= . ..|-.-+|++|...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq-~--tpdllPsDi~G~~v 46 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ-F--TPDLLPSDILGFPV 46 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-----TT--HHHHHEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE-e--cCCCCcccceeeee
Confidence 456788899999999999987655434432 2 34444678888753
No 450
>PRK07413 hypothetical protein; Validated
Probab=87.65 E-value=1.1 Score=46.36 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC------ceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGL------STCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~------rvLLv 83 (449)
-.|++++|.| =||||.|..+|+..+-+|+ ||+++
T Consensus 20 Gli~VytG~G-KGKTTAAlGlalRA~G~G~~~~~~~rV~iv 59 (382)
T PRK07413 20 GQLHVYDGEG-KGKSQAALGVVLRTIGLGICEKRQTRVLLL 59 (382)
T ss_pred CeEEEEeCCC-CCHHHHHHHHHHHHhcCCCCcCCCCeEEEE
Confidence 4899999975 7999999999999999998 99999
No 451
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=87.62 E-value=0.57 Score=43.32 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+|.++|.-|+||||+|..++... |..+ + |+|-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~--i--~~D~ 32 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPV--I--DADK 32 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeE--E--eCCH
Confidence 47899999999999998766432 3655 4 7775
No 452
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=87.57 E-value=0.65 Score=42.65 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+++++|..|+||||.|..+|..+ |.+++.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~i 32 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYI 32 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeC
Confidence 368999999999999999887653 5566655
No 453
>PRK13949 shikimate kinase; Provisional
Probab=87.50 E-value=0.55 Score=42.97 Aligned_cols=35 Identities=34% Similarity=0.379 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
+-|++.|..|+||||++..+|..+ |.. .+ |+|--+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l---~~~--~i--d~D~~i 36 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL---GLS--FI--DLDFFI 36 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCC--ee--cccHHH
Confidence 346778999999999999988777 443 45 777433
No 454
>PLN02840 tRNA dimethylallyltransferase
Probab=87.37 E-value=0.79 Score=48.19 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+..++++.|..|+||||+|..+|..+
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~ 45 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRL 45 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 35789999999999999999998776
No 455
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.34 E-value=0.57 Score=46.57 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||++|.++|..+ |.+...+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~ 61 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM---GVNLKIT 61 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---CCCEEEe
Confidence 457889999999999999998765 3444444
No 456
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=87.32 E-value=0.84 Score=44.21 Aligned_cols=30 Identities=30% Similarity=0.580 Sum_probs=26.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+-|.|. .||||+-..+|..+..+|+||++-
T Consensus 2 i~~vG~--gGKTtl~~~l~~~~~~~g~~v~~T 31 (232)
T TIGR03172 2 IAFVGA--GGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred EEEEcC--CcHHHHHHHHHHHHHHCCCeEEEE
Confidence 455564 699999999999999999999987
No 457
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.20 E-value=0.58 Score=47.38 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+||||+|.++|..+ |.++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~ 82 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEM---GVNIRIT 82 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHh---CCCeEEE
Confidence 4567889999999999999998776 4444444
No 458
>PRK13976 thymidylate kinase; Provisional
Probab=87.06 E-value=0.96 Score=42.99 Aligned_cols=33 Identities=39% Similarity=0.493 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc-C-CceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMA-G-LSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~-G-~rvLLv 83 (449)
+|+|-|--|+||||.+..++.+|..+ | ++|.+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 68888999999999999999999987 6 577654
No 459
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=87.05 E-value=0.52 Score=48.88 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
.+|.|..|+||||+|..+|...
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhh
Confidence 4888999999999999999866
No 460
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=87.05 E-value=0.6 Score=44.40 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAE 92 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~ 92 (449)
..+|++.|.=|+||||+|.+||..+- .+|..=..+-||=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~---~~~~~E~vednp~L~ 44 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG---FKVFYELVEDNPFLD 44 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC---CceeeecccCChHHH
Confidence 46888999999999999999988774 555543224455333
No 461
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.02 E-value=0.79 Score=46.01 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcC--CceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAG--LSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G--~rvLLv 83 (449)
.+++.|..|+||||+|.++|..+...+ .+++.+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 468899999999999999998886543 344555
No 462
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=87.02 E-value=1.2 Score=50.87 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhh
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYIL 95 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~ 95 (449)
.=.++.|+.|+||||+...++..+...|.++.++ |.+.+ +...+
T Consensus 439 ~N~~I~G~sGsGKS~l~~~l~~~~~~~g~~vvii--D~g~sy~~l~~~l 485 (829)
T TIGR03783 439 RNKFILGPSGSGKSFFTNHLVRQYYEQGTHILLV--DTGNSYQGLCELI 485 (829)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE--CCCccHHHHHHHh
Confidence 3458889999999999999999999999999999 88765 44445
No 463
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.00 E-value=1.1 Score=46.29 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc---CCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA---GLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~---G~rvLLv 83 (449)
...+++++|..|+||||+..++...+... +.+++.+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~ 171 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY 171 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 35799999999999999999999888653 3455443
No 464
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.88 E-value=1 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=27.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+.++++.|..|+||||++.+++..+ |..++.+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i 74 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFV 74 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CccceEe
Confidence 5788999999999999999997765 5677766
No 465
>PLN02165 adenylate isopentenyltransferase
Probab=86.86 E-value=1.2 Score=45.50 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++++.|..|+||||+|.++|..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHc
Confidence 4589999999999999999988775
No 466
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.58 E-value=0.76 Score=49.60 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
....++|+|..|+||||+|.++|.++-..|
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 357789999999999999999999886543
No 467
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=86.55 E-value=1.1 Score=42.87 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+++++.|..|+|||..|.++|..+ |-.|+..
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~ 32 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKT---GAPVISL 32 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE
T ss_pred CcEEEEECCCCCChhHHHHHHHHHh---CCCEEEe
Confidence 6899999999999999998888766 6677665
No 468
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=86.35 E-value=0.63 Score=41.67 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=17.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
|+=+++.|+.|+||||++.+|-
T Consensus 1 MkrimliG~~g~GKTTL~q~L~ 22 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALN 22 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHc
Confidence 3556788999999999997764
No 469
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=86.31 E-value=0.81 Score=41.76 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
..+.++.|..|+||||+..++...|-.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 579999999999999999999888854
No 470
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=86.24 E-value=0.7 Score=42.65 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.|++++.|..|+||+|++..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5899999999999999998887664
No 471
>PRK04195 replication factor C large subunit; Provisional
Probab=86.22 E-value=0.85 Score=48.86 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=27.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.++++|..|+||||+|.++|..+ |..++-+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 6889999999999999999998765 7777766
No 472
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.00 E-value=0.79 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
...++|+|..|+||||+|-.+|..+-.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999999988854
No 473
>PRK07413 hypothetical protein; Validated
Probab=85.99 E-value=1.1 Score=46.41 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCC------ceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGL------STCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~------rvLLv 83 (449)
.-.|.+++|.| =||||.|.-+|+..+-+|+ ||+++
T Consensus 200 ~g~i~VYTG~G-KGKTTAAlGlAlRA~G~G~~~~~~~rV~iv 240 (382)
T PRK07413 200 SGGIEIYTGEG-KGKSTSALGKALQAIGRGISQDKSHRVLIL 240 (382)
T ss_pred CCeEEEEeCCC-CCchHHHHHHHHHHhcCCCCcccCceEEEE
Confidence 36899999975 7999999999999999997 99998
No 474
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=85.84 E-value=1.4 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=29.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
...+-++.|.|-.|+|||.+|--+|..+=+.|.+-
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 34567888999999999999999999988887543
No 475
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=85.81 E-value=0.63 Score=41.00 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
++++.|+.|+||||++..++..+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 36788999999999998888655
No 476
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.56 E-value=1.1 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...++|.|..|||||++|.++|..+-..+.+.+.+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 45778999999999999999999988777788877
No 477
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=85.54 E-value=1.3 Score=38.42 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...+.+.|..|+||||+..++. |.++..+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~ 31 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIV 31 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEec
Confidence 4568889999999999988875 5566554
No 478
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.49 E-value=0.89 Score=40.19 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
..++++.|.-|+||||++..++..+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998773
No 479
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=85.47 E-value=0.84 Score=48.01 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
++-+++.|..|+||||+|.++|..+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3557788999999999999999877
No 480
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.45 E-value=1.2 Score=45.89 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcC--CceEEEecCCC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAG--LSTCLVLHSQD 88 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G--~rvLLv~~d~D 88 (449)
..++++|..|+||||++..++..+.+.+ ..+.-+ ++.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i--n~~ 94 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI--NCQ 94 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE--ECC
Confidence 4578999999999999999999988765 455555 543
No 481
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=85.28 E-value=1.1 Score=42.45 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+.+|.++|.-|+||||++..++.. .|..| + |+|--
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~---lg~~v--i--daD~i 40 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEK---LNLNV--V--CADTI 40 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH---cCCeE--E--eccHH
Confidence 367899999999999999877642 37775 5 77753
No 482
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.22 E-value=0.91 Score=52.17 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=0.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH-------cCCceEEEecCCC
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAM-------AGLSTCLVLHSQD 88 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~-------~G~rvLLv~~d~D 88 (449)
+++.|..|||||+++.++|..+.+ +|++++.+ |..
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l--~l~ 243 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL--DMG 243 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE--ehh
No 483
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.22 E-value=0.96 Score=50.16 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=24.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
...++|+|.-|+||||+|.++|..+-.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578899999999999999999988753
No 484
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=85.20 E-value=1.1 Score=41.80 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH----cCCceEEEecCCC
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAM----AGLSTCLVLHSQD 88 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~----~G~rvLLv~~d~D 88 (449)
+++.|..|.|||++..+++..++. ...++.++ |..
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~ii--D~k 79 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYII--DPK 79 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE---TT
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEE--cCC
Confidence 577789999999999999999998 46666666 644
No 485
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=85.04 E-value=1.3 Score=40.62 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=27.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++++|-=|+||||+=-++.. ....|.|+.++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 688999999999999998888 66789999999
No 486
>PRK14526 adenylate kinase; Provisional
Probab=85.03 E-value=0.93 Score=43.18 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|+ +++.|..|+||||+|..+|..+
T Consensus 1 m~-i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 1 MK-LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHh
Confidence 35 4578999999999998888654
No 487
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.02 E-value=1 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
...++|+|.-|+||||+|-++|..+-
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999998774
No 488
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.02 E-value=0.86 Score=47.76 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=22.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-+++.|..|+||||+|.++|..+ +.+..-+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l 67 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT---DAPFEAL 67 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 46779999999999999998754 3444444
No 489
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=84.99 E-value=1.4 Score=49.77 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC--CceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG--LSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G--~rvLLv 83 (449)
.++.+++|-.|+||||+..++...+.+.| ++++++
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ 374 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLA 374 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 46999999999999999999988888887 777776
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.80 E-value=0.82 Score=44.36 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=25.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
=++++|..|+||||....+|..+--..++-.++
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 356899999999999999998876544554444
No 491
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=84.73 E-value=0.84 Score=42.00 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.|++++.|+.|+||||++-.|...+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999999999999998887644
No 492
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.70 E-value=1.2 Score=45.45 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
..+++++|..|+||||+..++...+... +.+++.+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 5799999999999999999998877653 4566655
No 493
>PRK14529 adenylate kinase; Provisional
Probab=84.64 E-value=1 Score=43.39 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
|+ |++.|..|+||||.|..+|..+.
T Consensus 1 m~-I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 1 MN-ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHHC
Confidence 35 56689999999999999998774
No 494
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.63 E-value=1.1 Score=48.02 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
...++|.|..|+||||+|.++|..+-.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356799999999999999999988743
No 495
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.61 E-value=0.8 Score=45.38 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|+.++|..|+||||++..++..+...| +.++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi 31 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVI 31 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEE
Confidence 467889999999999999997775544 3345
No 496
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.55 E-value=1 Score=49.59 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=30.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH--cCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAM--AGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~--~G~rvLLv 83 (449)
.-+++.|+.|+|||.++.++|..+.+ .|++|+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 34788999999999999999999876 49999988
No 497
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.52 E-value=1 Score=48.59 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
..-++|+|.-|+||||+|..+|..+-.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999988854
No 498
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=84.52 E-value=1.5 Score=41.43 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
.++.++|.-|+||||++..++ ..|..|+ |+|
T Consensus 6 ~~igitG~igsGKSt~~~~l~----~~g~~v~----d~D 36 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLA----EMGCELF----EAD 36 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCeEE----ecc
Confidence 578889999999999998776 3577664 777
No 499
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=84.51 E-value=0.77 Score=46.61 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=27.8
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 57 KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 57 KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
-||.|||-+...+|..+.++|.|+.++ |-.
T Consensus 57 vGGtGKTP~vi~la~~l~~rG~~~gvv--SRG 86 (336)
T COG1663 57 VGGTGKTPVVIWLAEALQARGVRVGVV--SRG 86 (336)
T ss_pred ECCCCcCHHHHHHHHHHHhcCCeeEEE--ecC
Confidence 599999999999999999999999999 543
No 500
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.44 E-value=1.1 Score=48.21 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
.+-++|+|.-|+||||+|..+|..+-.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 467899999999999999999987754
Done!