Query 013114
Match_columns 449
No_of_seqs 263 out of 2633
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3igf_A ALL4481 protein; two-do 100.0 5.4E-68 1.8E-72 541.9 30.4 355 48-448 1-366 (374)
2 3iqw_A Tail-anchored protein t 100.0 4.7E-47 1.6E-51 382.5 24.6 293 47-373 14-326 (334)
3 3zq6_A Putative arsenical pump 100.0 1.8E-45 6E-50 369.5 28.5 291 48-373 13-323 (324)
4 3ug7_A Arsenical pump-driving 100.0 8.6E-46 3E-50 375.6 24.4 298 47-376 24-341 (349)
5 3io3_A DEHA2D07832P; chaperone 100.0 3.4E-46 1.2E-50 378.2 18.8 297 47-376 16-338 (348)
6 2woo_A ATPase GET3; tail-ancho 100.0 8.6E-42 2.9E-46 343.5 22.7 283 48-368 18-319 (329)
7 2woj_A ATPase GET3; tail-ancho 100.0 9.1E-41 3.1E-45 339.3 22.5 287 48-368 17-336 (354)
8 1ihu_A Arsenical pump-driving 100.0 1.7E-34 5.8E-39 311.2 10.8 320 47-418 6-364 (589)
9 1ihu_A Arsenical pump-driving 100.0 1E-28 3.4E-33 266.2 16.2 241 48-363 326-582 (589)
10 3la6_A Tyrosine-protein kinase 99.7 9.3E-18 3.2E-22 165.3 12.2 166 49-316 93-263 (286)
11 3fwy_A Light-independent proto 99.7 3E-17 1E-21 163.7 13.7 41 48-90 47-87 (314)
12 3kjh_A CO dehydrogenase/acetyl 99.7 7.5E-17 2.6E-21 152.9 15.0 61 279-342 156-217 (254)
13 2ph1_A Nucleotide-binding prot 99.7 2E-16 6.8E-21 153.0 17.7 48 49-98 19-69 (262)
14 1g3q_A MIND ATPase, cell divis 99.7 1.3E-16 4.6E-21 150.8 14.4 189 49-343 3-200 (237)
15 3ea0_A ATPase, para family; al 99.7 5.9E-17 2E-21 153.8 11.6 197 48-343 4-208 (245)
16 3end_A Light-independent proto 99.7 3.8E-16 1.3E-20 154.2 17.8 48 48-97 40-89 (307)
17 3bfv_A CAPA1, CAPB2, membrane 99.7 2.5E-16 8.6E-21 153.8 14.9 168 49-316 83-253 (271)
18 1wcv_1 SOJ, segregation protei 99.7 3.2E-16 1.1E-20 151.0 13.8 49 48-98 6-56 (257)
19 1hyq_A MIND, cell division inh 99.7 8E-16 2.7E-20 148.0 16.3 188 49-343 3-199 (263)
20 4dzz_A Plasmid partitioning pr 99.7 9.3E-16 3.2E-20 141.5 14.6 47 48-96 1-49 (206)
21 3cio_A ETK, tyrosine-protein k 99.6 6E-16 2.1E-20 153.2 12.8 168 49-316 105-275 (299)
22 1cp2_A CP2, nitrogenase iron p 99.6 2.5E-15 8.5E-20 145.0 16.0 64 279-343 143-211 (269)
23 2afh_E Nitrogenase iron protei 99.6 1.5E-15 5.2E-20 148.6 14.3 64 279-343 146-214 (289)
24 3k9g_A PF-32 protein; ssgcid, 99.6 1.2E-15 4.2E-20 147.3 12.5 46 48-96 27-74 (267)
25 3pg5_A Uncharacterized protein 99.6 7.4E-16 2.5E-20 156.4 10.7 46 48-95 1-48 (361)
26 2oze_A ORF delta'; para, walke 99.6 6.2E-15 2.1E-19 144.6 15.5 55 279-334 179-242 (298)
27 3ez2_A Plasmid partition prote 99.6 1.8E-15 6.3E-20 155.0 12.0 50 47-98 107-164 (398)
28 3q9l_A Septum site-determining 99.6 2.7E-15 9.3E-20 143.5 12.0 47 50-98 4-53 (260)
29 3ez9_A Para; DNA binding, wing 99.6 2.9E-15 1E-19 153.8 10.2 50 47-98 110-167 (403)
30 3cwq_A Para family chromosome 99.5 5.4E-14 1.9E-18 131.6 13.6 46 49-97 1-48 (209)
31 3fkq_A NTRC-like two-domain pr 99.5 7.8E-14 2.7E-18 141.9 11.5 50 47-98 142-193 (373)
32 1byi_A Dethiobiotin synthase; 99.5 3.2E-13 1.1E-17 126.5 14.3 65 279-344 140-207 (224)
33 2xj4_A MIPZ; replication, cell 99.5 1.2E-13 4.3E-18 135.1 11.7 49 48-98 3-55 (286)
34 4fei_A Heat shock protein-rela 99.3 2.3E-12 7.8E-17 107.4 8.8 71 377-449 5-92 (102)
35 3gla_A Low molecular weight he 99.3 4.8E-12 1.6E-16 104.9 8.9 71 377-449 3-95 (100)
36 3aab_A Putative uncharacterize 99.3 4.8E-12 1.7E-16 109.0 6.0 70 378-449 24-113 (123)
37 1gme_A Heat shock protein 16.9 99.1 1.2E-10 4.1E-15 103.8 9.2 71 378-449 43-135 (151)
38 2xxa_A Signal recognition part 99.1 5.2E-10 1.8E-14 116.0 15.0 42 47-90 98-140 (433)
39 4eld_A MJ16.5-P1, small heat s 99.1 1.3E-10 4.5E-15 104.7 8.6 70 378-449 56-148 (161)
40 3q9p_A Heat shock protein beta 99.1 2.6E-10 8.9E-15 91.8 7.6 62 386-449 7-82 (85)
41 1zu4_A FTSY; GTPase, signal re 99.0 1.2E-08 4E-13 101.8 19.7 41 47-89 103-143 (320)
42 2y1y_A Alpha-crystallin B chai 99.0 5.9E-10 2E-14 90.6 7.8 63 385-449 5-81 (90)
43 1j8m_F SRP54, signal recogniti 99.0 5.9E-09 2E-13 102.9 16.5 40 49-90 98-137 (297)
44 3l1e_A Alpha-crystallin A chai 98.9 1.8E-09 6E-14 90.5 8.3 67 381-449 5-87 (106)
45 1ls1_A Signal recognition part 98.9 6.1E-08 2.1E-12 95.4 20.1 41 48-90 97-137 (295)
46 2wj5_A Heat shock protein beta 98.9 2.4E-09 8.2E-14 88.9 7.3 66 382-449 5-86 (101)
47 3dm5_A SRP54, signal recogniti 98.9 1.8E-07 6.1E-12 97.0 21.0 40 48-89 99-138 (443)
48 2ffh_A Protein (FFH); SRP54, s 98.8 1.4E-07 4.7E-12 97.5 19.0 41 48-90 97-137 (425)
49 3fgn_A Dethiobiotin synthetase 98.8 1.4E-07 4.9E-12 90.7 15.7 79 278-367 158-241 (251)
50 3of5_A Dethiobiotin synthetase 98.7 1.8E-07 6E-12 88.7 15.6 62 279-341 142-206 (228)
51 1vma_A Cell division protein F 98.7 5.7E-07 2E-11 89.0 19.4 41 47-89 102-142 (306)
52 2bol_A TSP36, small heat shock 98.7 2.6E-08 8.9E-13 98.7 7.8 61 387-449 113-186 (314)
53 1g5t_A COB(I)alamin adenosyltr 98.6 2E-08 6.9E-13 93.0 5.0 120 49-214 29-150 (196)
54 2klr_A Alpha-crystallin B chai 98.6 3.6E-08 1.2E-12 89.9 6.5 67 381-449 66-148 (175)
55 3kl4_A SRP54, signal recogniti 98.6 5.6E-07 1.9E-11 93.1 15.9 40 48-89 96-135 (433)
56 2j37_W Signal recognition part 98.6 1E-06 3.5E-11 92.8 17.2 40 48-89 100-139 (504)
57 2bol_A TSP36, small heat shock 98.6 8E-08 2.7E-12 95.2 8.2 61 387-449 234-311 (314)
58 2r8r_A Sensor protein; KDPD, P 98.5 1.6E-07 5.4E-12 88.9 6.2 39 49-89 6-44 (228)
59 3qxc_A Dethiobiotin synthetase 98.5 2.8E-06 9.5E-11 81.3 14.9 37 278-316 162-198 (242)
60 1yrb_A ATP(GTP)binding protein 98.4 2.2E-07 7.6E-12 88.4 5.4 40 48-90 13-52 (262)
61 3p32_A Probable GTPase RV1496/ 98.3 6.1E-07 2.1E-11 90.3 7.4 41 48-90 78-118 (355)
62 2v3c_C SRP54, signal recogniti 97.8 8.6E-06 2.9E-10 84.3 3.9 40 49-90 99-138 (432)
63 2px0_A Flagellar biosynthesis 97.7 2.5E-05 8.6E-10 76.7 5.5 40 48-89 104-144 (296)
64 2yhs_A FTSY, cell division pro 97.7 0.0023 7.7E-08 67.1 19.6 40 48-89 292-331 (503)
65 1u94_A RECA protein, recombina 97.5 0.00023 7.7E-09 71.7 8.7 43 46-90 60-102 (356)
66 1xp8_A RECA protein, recombina 97.3 0.00058 2E-08 69.0 8.9 42 47-90 72-113 (366)
67 1xjc_A MOBB protein homolog; s 97.2 0.00041 1.4E-08 62.5 5.5 40 48-89 3-42 (169)
68 3pzx_A Formate--tetrahydrofola 97.1 0.00065 2.2E-08 70.3 7.2 50 49-100 57-110 (557)
69 4a0g_A Adenosylmethionine-8-am 97.1 0.0045 1.5E-07 69.0 13.9 65 278-346 232-297 (831)
70 2zr9_A Protein RECA, recombina 96.9 0.0019 6.5E-08 64.7 8.2 43 46-90 58-100 (349)
71 3bgw_A DNAB-like replicative h 96.7 0.0058 2E-07 63.2 10.5 41 47-89 195-235 (444)
72 3bh0_A DNAB-like replicative h 96.7 0.0076 2.6E-07 59.2 10.8 40 48-89 67-106 (315)
73 2p67_A LAO/AO transport system 96.7 0.0013 4.5E-08 65.5 5.3 40 49-90 56-95 (341)
74 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0016 5.4E-08 62.2 5.6 39 49-89 4-42 (260)
75 2yvu_A Probable adenylyl-sulfa 96.7 0.0012 4.2E-08 59.1 4.5 38 49-88 13-50 (186)
76 2q6t_A DNAB replication FORK h 96.7 0.012 4.1E-07 60.6 12.3 39 48-86 199-238 (444)
77 3hr8_A Protein RECA; alpha and 96.7 0.0094 3.2E-07 59.9 11.2 43 46-90 58-100 (356)
78 1nks_A Adenylate kinase; therm 96.5 0.0017 5.7E-08 57.9 3.7 35 49-83 1-35 (194)
79 2r6a_A DNAB helicase, replicat 96.4 0.012 4.2E-07 60.7 10.2 39 48-86 202-241 (454)
80 1rj9_A FTSY, signal recognitio 96.3 0.0044 1.5E-07 60.9 6.1 40 48-89 101-140 (304)
81 1np6_A Molybdopterin-guanine d 96.3 0.0037 1.3E-07 56.4 5.1 41 47-89 4-44 (174)
82 2obn_A Hypothetical protein; s 96.3 0.041 1.4E-06 55.0 13.2 59 279-339 256-333 (349)
83 1vco_A CTP synthetase; tetrame 96.2 0.14 4.7E-06 54.2 17.2 41 47-89 10-52 (550)
84 2dr3_A UPF0273 protein PH0284; 96.1 0.0055 1.9E-07 56.8 5.5 41 48-90 22-62 (247)
85 2w58_A DNAI, primosome compone 96.1 0.0055 1.9E-07 55.4 5.1 34 50-83 55-88 (202)
86 2wsm_A Hydrogenase expression/ 96.1 0.0048 1.6E-07 56.4 4.6 39 49-90 30-68 (221)
87 3e70_C DPA, signal recognition 96.0 0.0066 2.2E-07 60.3 5.8 41 47-89 127-167 (328)
88 3b9q_A Chloroplast SRP recepto 95.9 0.012 4E-07 57.8 6.6 40 48-89 99-138 (302)
89 1rz3_A Hypothetical protein rb 95.8 0.0084 2.9E-07 54.6 5.0 39 49-89 22-60 (201)
90 3ec2_A DNA replication protein 95.8 0.0072 2.5E-07 53.7 4.3 35 49-83 38-73 (180)
91 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.011 3.8E-07 54.0 5.6 40 49-90 23-62 (235)
92 2cvh_A DNA repair and recombin 95.7 0.0082 2.8E-07 54.6 4.7 37 48-89 19-55 (220)
93 2xcm_C SGT1-like protein, cyto 95.7 0.049 1.7E-06 43.1 8.7 61 386-448 12-77 (92)
94 1kht_A Adenylate kinase; phosp 95.7 0.006 2E-07 54.2 3.3 35 49-83 3-37 (192)
95 2og2_A Putative signal recogni 95.6 0.016 5.4E-07 58.3 6.6 40 48-89 156-195 (359)
96 2orw_A Thymidine kinase; TMTK, 95.5 0.013 4.5E-07 53.0 5.2 35 50-84 4-38 (184)
97 1xx6_A Thymidine kinase; NESG, 95.5 0.018 6.2E-07 52.6 6.0 35 49-83 8-42 (191)
98 2b8t_A Thymidine kinase; deoxy 95.5 0.016 5.4E-07 54.4 5.7 36 49-84 12-47 (223)
99 1rl1_A Suppressor of G2 allele 95.5 0.037 1.3E-06 45.9 7.3 68 379-448 10-84 (114)
100 3bos_A Putative DNA replicatio 95.4 0.013 4.4E-07 53.7 4.8 35 49-83 52-86 (242)
101 2pez_A Bifunctional 3'-phospho 95.4 0.012 4.1E-07 52.2 4.4 35 49-83 5-39 (179)
102 1m7g_A Adenylylsulfate kinase; 95.3 0.014 4.8E-07 53.4 4.8 38 49-88 25-63 (211)
103 1qhx_A CPT, protein (chloramph 95.3 0.0096 3.3E-07 52.5 3.2 35 49-88 3-37 (178)
104 2qgz_A Helicase loader, putati 95.2 0.017 5.8E-07 56.6 5.3 35 49-83 152-187 (308)
105 1s1m_A CTP synthase; CTP synth 95.2 0.49 1.7E-05 50.0 16.5 39 49-89 3-43 (545)
106 1uj2_A Uridine-cytidine kinase 95.2 0.011 3.8E-07 55.8 3.7 39 48-88 21-64 (252)
107 2z0h_A DTMP kinase, thymidylat 95.2 0.022 7.5E-07 50.8 5.5 33 51-83 2-34 (197)
108 3uie_A Adenylyl-sulfate kinase 95.2 0.016 5.4E-07 52.6 4.5 38 49-88 25-62 (200)
109 1nn5_A Similar to deoxythymidy 95.1 0.022 7.5E-07 51.6 5.4 35 49-83 9-43 (215)
110 1e6c_A Shikimate kinase; phosp 95.1 0.012 4E-07 51.6 3.4 26 48-73 1-26 (173)
111 3kb2_A SPBC2 prophage-derived 95.0 0.014 4.9E-07 50.7 3.6 34 49-89 1-34 (173)
112 2r2a_A Uncharacterized protein 95.0 0.017 5.7E-07 53.2 4.2 37 47-83 3-45 (199)
113 1qf9_A UMP/CMP kinase, protein 95.0 0.019 6.5E-07 50.9 4.4 27 47-73 4-30 (194)
114 4a1f_A DNAB helicase, replicat 95.0 0.028 9.6E-07 56.0 6.0 39 49-89 46-84 (338)
115 2gks_A Bifunctional SAT/APS ki 94.9 0.018 6.1E-07 61.1 4.7 39 49-89 372-410 (546)
116 2axn_A 6-phosphofructo-2-kinas 94.9 0.026 8.8E-07 59.5 5.9 42 46-89 32-73 (520)
117 2pbr_A DTMP kinase, thymidylat 94.9 0.025 8.5E-07 50.2 5.0 33 51-83 2-34 (195)
118 1a7j_A Phosphoribulokinase; tr 94.9 0.011 3.8E-07 57.5 2.8 39 49-89 5-43 (290)
119 1ly1_A Polynucleotide kinase; 94.9 0.017 5.7E-07 50.7 3.8 35 48-88 1-35 (181)
120 1jbk_A CLPB protein; beta barr 94.9 0.036 1.2E-06 48.3 5.8 35 49-83 43-84 (195)
121 2wwf_A Thymidilate kinase, put 94.8 0.027 9.3E-07 50.9 5.1 35 49-83 10-44 (212)
122 2zts_A Putative uncharacterize 94.8 0.028 9.5E-07 51.9 5.3 41 47-89 28-69 (251)
123 2hf9_A Probable hydrogenase ni 94.8 0.017 5.8E-07 52.8 3.8 38 49-89 38-75 (226)
124 3cmu_A Protein RECA, recombina 94.8 0.13 4.6E-06 61.9 12.2 41 48-90 1426-1466(2050)
125 2rhm_A Putative kinase; P-loop 94.8 0.026 8.8E-07 50.2 4.8 30 48-80 4-33 (193)
126 2kjq_A DNAA-related protein; s 94.7 0.019 6.6E-07 50.0 3.7 35 49-83 36-70 (149)
127 1via_A Shikimate kinase; struc 94.7 0.017 5.9E-07 51.0 3.2 26 48-73 3-28 (175)
128 3trf_A Shikimate kinase, SK; a 94.6 0.022 7.4E-07 50.5 3.8 35 48-89 4-38 (185)
129 2plr_A DTMP kinase, probable t 94.5 0.034 1.2E-06 50.0 4.9 33 50-83 5-37 (213)
130 2p65_A Hypothetical protein PF 94.5 0.034 1.2E-06 48.5 4.8 27 49-75 43-69 (187)
131 3t61_A Gluconokinase; PSI-biol 94.5 0.029 9.9E-07 50.7 4.3 35 48-89 17-51 (202)
132 1x6v_B Bifunctional 3'-phospho 94.4 0.033 1.1E-06 60.0 5.2 39 48-88 51-89 (630)
133 2k8q_A Protein SHQ1; beta-sand 94.4 0.08 2.7E-06 45.5 6.5 69 379-449 4-79 (134)
134 1q57_A DNA primase/helicase; d 94.3 0.032 1.1E-06 58.2 4.9 41 47-89 240-281 (503)
135 3io5_A Recombination and repai 94.3 0.13 4.4E-06 50.9 8.8 46 51-98 30-81 (333)
136 1ukz_A Uridylate kinase; trans 94.3 0.033 1.1E-06 50.2 4.3 27 47-73 13-39 (203)
137 3lw7_A Adenylate kinase relate 94.3 0.033 1.1E-06 48.1 4.2 28 50-81 2-29 (179)
138 1cr0_A DNA primase/helicase; R 94.3 0.041 1.4E-06 52.9 5.3 39 49-89 35-74 (296)
139 3do6_A Formate--tetrahydrofola 94.3 0.071 2.4E-06 55.0 7.0 49 49-99 43-95 (543)
140 2z43_A DNA repair and recombin 94.2 0.035 1.2E-06 54.6 4.7 41 47-89 105-151 (324)
141 2j9r_A Thymidine kinase; TK1, 94.2 0.069 2.4E-06 49.7 6.2 35 49-83 28-62 (214)
142 2iyv_A Shikimate kinase, SK; t 94.2 0.024 8.2E-07 50.3 3.0 34 49-89 2-35 (184)
143 2ze6_A Isopentenyl transferase 94.2 0.034 1.1E-06 52.7 4.2 25 49-73 1-25 (253)
144 1v5w_A DMC1, meiotic recombina 94.1 0.056 1.9E-06 53.6 5.9 42 46-89 119-166 (343)
145 3cmw_A Protein RECA, recombina 94.1 0.22 7.4E-06 59.3 11.7 43 47-91 730-772 (1706)
146 1m8p_A Sulfate adenylyltransfe 94.1 0.037 1.3E-06 59.0 4.7 40 47-88 394-434 (573)
147 2f1r_A Molybdopterin-guanine d 94.0 0.031 1.1E-06 50.0 3.5 36 48-83 1-36 (171)
148 1gtv_A TMK, thymidylate kinase 94.0 0.016 5.3E-07 52.6 1.5 34 50-83 1-34 (214)
149 3umf_A Adenylate kinase; rossm 94.0 0.049 1.7E-06 50.8 4.8 33 41-73 21-53 (217)
150 3vaa_A Shikimate kinase, SK; s 94.0 0.037 1.3E-06 50.0 3.9 29 49-80 25-53 (199)
151 1gvn_B Zeta; postsegregational 94.0 0.042 1.4E-06 53.2 4.5 36 48-88 32-67 (287)
152 4edh_A DTMP kinase, thymidylat 93.9 0.065 2.2E-06 49.6 5.6 35 49-83 6-40 (213)
153 1zuh_A Shikimate kinase; alpha 93.9 0.039 1.3E-06 48.2 3.8 35 48-89 6-40 (168)
154 1tev_A UMP-CMP kinase; ploop, 93.8 0.047 1.6E-06 48.3 4.2 25 49-73 3-27 (196)
155 3e1s_A Exodeoxyribonuclease V, 93.7 0.056 1.9E-06 57.6 5.3 35 49-83 204-238 (574)
156 3ld9_A DTMP kinase, thymidylat 93.7 0.06 2E-06 50.4 4.8 36 48-83 20-56 (223)
157 1kag_A SKI, shikimate kinase I 93.6 0.033 1.1E-06 48.7 2.8 26 48-73 3-28 (173)
158 2c95_A Adenylate kinase 1; tra 93.5 0.048 1.7E-06 48.5 3.8 25 49-73 9-33 (196)
159 3d3q_A TRNA delta(2)-isopenten 93.5 0.05 1.7E-06 54.2 4.2 35 48-89 6-40 (340)
160 3t15_A Ribulose bisphosphate c 93.5 0.058 2E-06 52.2 4.6 32 49-83 36-67 (293)
161 2f6r_A COA synthase, bifunctio 93.5 0.088 3E-06 50.6 5.8 36 46-89 72-107 (281)
162 2cdn_A Adenylate kinase; phosp 93.5 0.061 2.1E-06 48.5 4.4 29 49-80 20-48 (201)
163 3nva_A CTP synthase; rossman f 93.5 1.5 5.1E-05 45.9 15.3 39 49-89 3-43 (535)
164 2p5t_B PEZT; postsegregational 93.4 0.049 1.7E-06 51.4 3.8 37 48-89 31-67 (253)
165 2v54_A DTMP kinase, thymidylat 93.4 0.048 1.6E-06 48.9 3.6 33 49-83 4-36 (204)
166 2orv_A Thymidine kinase; TP4A 93.4 0.11 3.7E-06 49.0 6.1 38 47-84 17-54 (234)
167 3cmw_A Protein RECA, recombina 93.4 0.24 8.2E-06 58.9 10.3 44 46-91 380-423 (1706)
168 2bwj_A Adenylate kinase 5; pho 93.4 0.041 1.4E-06 49.1 3.1 25 49-73 12-36 (199)
169 3c8u_A Fructokinase; YP_612366 93.4 0.089 3E-06 47.9 5.4 40 48-89 21-60 (208)
170 3eud_A Protein SHQ1; CS domain 93.3 0.67 2.3E-05 38.6 9.9 71 377-449 16-93 (115)
171 3cmu_A Protein RECA, recombina 93.3 0.29 1E-05 59.0 10.8 43 47-91 381-423 (2050)
172 3iij_A Coilin-interacting nucl 93.1 0.054 1.9E-06 47.8 3.5 25 49-73 11-35 (180)
173 1l8q_A Chromosomal replication 93.1 0.077 2.6E-06 51.6 4.8 35 49-83 37-71 (324)
174 1aky_A Adenylate kinase; ATP:A 93.1 0.064 2.2E-06 49.1 3.9 25 49-73 4-28 (220)
175 2qby_B CDC6 homolog 3, cell di 93.1 0.068 2.3E-06 52.8 4.4 35 49-83 45-87 (384)
176 1jjv_A Dephospho-COA kinase; P 93.1 0.061 2.1E-06 48.6 3.7 33 48-88 1-33 (206)
177 2vli_A Antibiotic resistance p 93.0 0.034 1.2E-06 49.0 1.9 30 49-81 5-34 (183)
178 2c5m_A CTP synthase; cytidine 93.0 1.9 6.4E-05 41.1 13.8 41 47-89 21-63 (294)
179 3cm0_A Adenylate kinase; ATP-b 93.0 0.076 2.6E-06 46.9 4.2 25 49-73 4-28 (186)
180 1odf_A YGR205W, hypothetical 3 93.0 0.088 3E-06 51.1 4.9 39 49-89 31-72 (290)
181 2www_A Methylmalonic aciduria 93.0 0.12 4.2E-06 51.3 6.2 40 49-90 74-113 (349)
182 1knq_A Gluconate kinase; ALFA/ 93.0 0.11 3.6E-06 45.6 5.1 25 49-73 8-32 (175)
183 4b3f_X DNA-binding protein smu 92.9 0.1 3.5E-06 56.1 5.9 34 50-83 206-239 (646)
184 1n0w_A DNA repair protein RAD5 92.9 0.058 2E-06 49.6 3.4 40 48-89 23-68 (243)
185 3lv8_A DTMP kinase, thymidylat 92.9 0.11 3.7E-06 49.0 5.3 35 49-83 27-62 (236)
186 1g8f_A Sulfate adenylyltransfe 92.9 0.079 2.7E-06 55.7 4.7 39 49-89 395-435 (511)
187 3n70_A Transport activator; si 92.9 0.037 1.3E-06 47.5 1.9 31 52-83 27-57 (145)
188 1zak_A Adenylate kinase; ATP:A 92.9 0.055 1.9E-06 49.6 3.2 26 48-73 4-29 (222)
189 3v9p_A DTMP kinase, thymidylat 92.8 0.09 3.1E-06 49.2 4.7 35 49-83 25-63 (227)
190 1uf9_A TT1252 protein; P-loop, 92.8 0.083 2.8E-06 47.2 4.2 34 48-89 7-40 (203)
191 2if2_A Dephospho-COA kinase; a 92.8 0.066 2.3E-06 48.2 3.6 23 49-71 1-23 (204)
192 2chg_A Replication factor C sm 92.8 0.058 2E-06 48.2 3.1 32 52-83 41-72 (226)
193 3crm_A TRNA delta(2)-isopenten 92.7 0.062 2.1E-06 53.2 3.5 35 48-89 4-38 (323)
194 1nlf_A Regulatory protein REPA 92.7 0.11 3.7E-06 49.6 5.1 28 48-75 29-56 (279)
195 3foz_A TRNA delta(2)-isopenten 92.7 0.12 4E-06 50.9 5.4 37 46-89 7-43 (316)
196 1zp6_A Hypothetical protein AT 92.7 0.093 3.2E-06 46.5 4.3 36 49-89 9-44 (191)
197 4eaq_A DTMP kinase, thymidylat 92.7 0.12 4E-06 48.3 5.1 35 48-83 25-59 (229)
198 3syl_A Protein CBBX; photosynt 92.6 0.14 4.9E-06 49.0 5.9 30 49-78 67-96 (309)
199 2a5y_B CED-4; apoptosis; HET: 92.5 0.076 2.6E-06 56.0 4.1 24 48-71 151-174 (549)
200 3tqc_A Pantothenate kinase; bi 92.5 0.11 3.6E-06 51.4 4.8 40 48-89 91-132 (321)
201 4fcw_A Chaperone protein CLPB; 92.4 0.11 3.8E-06 49.7 4.8 35 49-83 47-81 (311)
202 3upu_A ATP-dependent DNA helic 92.4 0.13 4.4E-06 52.9 5.5 34 50-83 46-80 (459)
203 4tmk_A Protein (thymidylate ki 92.4 0.14 4.9E-06 47.3 5.3 34 50-83 4-38 (213)
204 3be4_A Adenylate kinase; malar 92.3 0.095 3.3E-06 48.0 4.0 24 50-73 6-29 (217)
205 1y63_A LMAJ004144AAA protein; 92.3 0.094 3.2E-06 46.7 3.9 24 49-72 10-33 (184)
206 1zd8_A GTP:AMP phosphotransfer 92.3 0.065 2.2E-06 49.4 2.8 25 49-73 7-31 (227)
207 3hjn_A DTMP kinase, thymidylat 92.2 0.17 5.7E-06 46.1 5.5 33 51-83 2-34 (197)
208 2v1u_A Cell division control p 92.2 0.1 3.5E-06 51.2 4.3 35 49-83 44-84 (387)
209 2bdt_A BH3686; alpha-beta prot 92.1 0.094 3.2E-06 46.6 3.6 23 49-71 2-24 (189)
210 1ak2_A Adenylate kinase isoenz 92.1 0.11 3.6E-06 48.2 4.1 25 49-73 16-40 (233)
211 4eun_A Thermoresistant glucoki 92.1 0.13 4.6E-06 46.3 4.7 25 49-73 29-53 (200)
212 2ehv_A Hypothetical protein PH 92.1 0.15 5.2E-06 46.9 5.1 41 47-89 28-69 (251)
213 2vhj_A Ntpase P4, P4; non- hyd 92.0 0.043 1.5E-06 54.4 1.3 33 48-83 122-154 (331)
214 2qt1_A Nicotinamide riboside k 92.0 0.062 2.1E-06 48.7 2.3 35 49-89 21-55 (207)
215 4hlc_A DTMP kinase, thymidylat 92.0 0.16 5.5E-06 46.6 5.1 35 48-83 1-35 (205)
216 2pt5_A Shikimate kinase, SK; a 92.0 0.11 3.9E-06 44.9 3.9 23 51-73 2-24 (168)
217 2qor_A Guanylate kinase; phosp 91.9 0.074 2.5E-06 48.2 2.7 25 49-73 12-36 (204)
218 3ake_A Cytidylate kinase; CMP 91.8 0.11 3.9E-06 46.5 3.8 24 50-73 3-26 (208)
219 2qby_A CDC6 homolog 1, cell di 91.6 0.15 5E-06 50.0 4.6 35 49-83 45-82 (386)
220 1ltq_A Polynucleotide kinase; 91.6 0.11 3.9E-06 49.7 3.8 35 48-88 1-35 (301)
221 3tlx_A Adenylate kinase 2; str 91.4 0.15 5.2E-06 47.7 4.4 25 49-73 29-53 (243)
222 3asz_A Uridine kinase; cytidin 91.4 0.14 4.8E-06 46.3 4.0 37 49-90 6-42 (211)
223 3tau_A Guanylate kinase, GMP k 91.4 0.12 4.2E-06 47.0 3.6 25 49-73 8-32 (208)
224 1w36_D RECD, exodeoxyribonucle 91.4 0.15 5.2E-06 54.6 4.8 35 49-83 164-202 (608)
225 1njg_A DNA polymerase III subu 91.3 0.13 4.6E-06 46.2 3.8 28 50-77 46-73 (250)
226 2qz4_A Paraplegin; AAA+, SPG7, 91.2 0.23 7.8E-06 46.2 5.4 32 49-83 39-70 (262)
227 3exa_A TRNA delta(2)-isopenten 91.2 0.15 5E-06 50.3 4.2 34 49-89 3-36 (322)
228 1sq5_A Pantothenate kinase; P- 91.1 0.15 5.3E-06 49.5 4.2 38 49-88 80-119 (308)
229 2jaq_A Deoxyguanosine kinase; 91.1 0.15 5.1E-06 45.4 3.9 23 51-73 2-24 (205)
230 1z6t_A APAF-1, apoptotic prote 91.1 0.13 4.5E-06 54.1 4.0 26 48-73 146-171 (591)
231 2i1q_A DNA repair and recombin 91.1 0.1 3.5E-06 50.9 2.9 41 47-89 96-152 (322)
232 3fb4_A Adenylate kinase; psych 91.0 0.15 5.2E-06 46.2 3.8 23 51-73 2-24 (216)
233 2grj_A Dephospho-COA kinase; T 91.0 0.13 4.3E-06 46.8 3.3 34 49-89 12-45 (192)
234 1fnn_A CDC6P, cell division co 91.0 0.18 6E-06 49.7 4.6 34 50-83 45-79 (389)
235 2z4s_A Chromosomal replication 91.0 0.17 5.6E-06 52.0 4.5 35 49-83 130-166 (440)
236 2xb4_A Adenylate kinase; ATP-b 90.9 0.2 6.8E-06 46.1 4.6 23 51-73 2-24 (223)
237 2bjv_A PSP operon transcriptio 90.8 0.11 3.7E-06 49.0 2.6 34 50-83 30-63 (265)
238 1e4v_A Adenylate kinase; trans 90.8 0.2 6.7E-06 45.6 4.3 27 52-81 3-29 (214)
239 3a8t_A Adenylate isopentenyltr 90.7 0.14 4.9E-06 50.9 3.6 34 49-89 40-73 (339)
240 2qm8_A GTPase/ATPase; G protei 90.6 0.28 9.5E-06 48.5 5.6 40 49-90 55-94 (337)
241 1tue_A Replication protein E1; 90.6 0.14 4.9E-06 47.4 3.2 26 48-73 57-82 (212)
242 1cke_A CK, MSSA, protein (cyti 90.6 0.19 6.6E-06 45.7 4.1 24 50-73 6-29 (227)
243 1bif_A 6-phosphofructo-2-kinas 90.5 0.19 6.3E-06 52.0 4.4 37 47-83 37-73 (469)
244 3ch4_B Pmkase, phosphomevalona 90.5 0.2 6.7E-06 46.2 4.0 34 48-83 10-43 (202)
245 1d2n_A N-ethylmaleimide-sensit 90.5 0.22 7.4E-06 47.1 4.5 33 48-83 63-95 (272)
246 1sxj_A Activator 1 95 kDa subu 90.5 0.23 7.9E-06 51.9 5.1 33 48-83 76-108 (516)
247 1kgd_A CASK, peripheral plasma 90.4 0.17 5.7E-06 44.9 3.4 25 49-73 5-29 (180)
248 1vht_A Dephospho-COA kinase; s 90.3 0.27 9.4E-06 44.6 4.9 28 49-80 4-31 (218)
249 1w5s_A Origin recognition comp 90.3 0.19 6.4E-06 50.0 4.1 35 49-83 50-92 (412)
250 1ofh_A ATP-dependent HSL prote 90.1 0.23 7.7E-06 47.3 4.3 31 50-83 51-81 (310)
251 1w4r_A Thymidine kinase; type 90.0 0.46 1.6E-05 43.4 6.1 42 48-89 19-60 (195)
252 3dl0_A Adenylate kinase; phosp 90.0 0.16 5.6E-06 46.0 3.1 22 52-73 3-24 (216)
253 2bbw_A Adenylate kinase 4, AK4 89.8 0.22 7.4E-06 46.4 3.8 25 49-73 27-51 (246)
254 2j41_A Guanylate kinase; GMP, 89.7 0.21 7.2E-06 44.6 3.5 25 49-73 6-30 (207)
255 1ex7_A Guanylate kinase; subst 89.6 0.16 5.4E-06 46.1 2.6 22 50-71 2-23 (186)
256 3sr0_A Adenylate kinase; phosp 89.5 0.25 8.4E-06 45.4 3.8 23 51-73 2-24 (206)
257 2jeo_A Uridine-cytidine kinase 89.4 0.29 9.8E-06 45.7 4.4 38 49-88 25-67 (245)
258 2gk6_A Regulator of nonsense t 89.3 0.36 1.2E-05 51.7 5.6 35 49-83 195-230 (624)
259 3h4m_A Proteasome-activating n 89.1 0.24 8.2E-06 46.8 3.7 32 49-83 51-82 (285)
260 3tr0_A Guanylate kinase, GMP k 89.1 0.25 8.6E-06 44.1 3.6 25 49-73 7-31 (205)
261 3aez_A Pantothenate kinase; tr 89.0 0.38 1.3E-05 47.1 5.1 41 48-90 89-131 (312)
262 3zvl_A Bifunctional polynucleo 88.8 0.23 7.8E-06 50.6 3.4 27 47-73 256-282 (416)
263 1lv7_A FTSH; alpha/beta domain 88.8 0.53 1.8E-05 43.8 5.7 31 50-83 46-76 (257)
264 2qmh_A HPR kinase/phosphorylas 88.3 0.27 9.3E-06 45.3 3.3 33 49-89 34-66 (205)
265 1hqc_A RUVB; extended AAA-ATPa 88.3 0.76 2.6E-05 44.0 6.7 31 50-83 39-69 (324)
266 3a00_A Guanylate kinase, GMP k 88.2 0.23 7.8E-06 44.2 2.6 25 50-74 2-26 (186)
267 1vt4_I APAF-1 related killer D 88.1 0.57 1.9E-05 53.4 6.2 41 49-89 150-193 (1221)
268 3b9p_A CG5977-PA, isoform A; A 87.9 0.29 1E-05 46.6 3.4 32 49-83 54-85 (297)
269 1um8_A ATP-dependent CLP prote 87.9 0.34 1.2E-05 48.1 3.9 32 49-83 72-103 (376)
270 3uk6_A RUVB-like 2; hexameric 87.8 0.37 1.3E-05 47.3 4.1 26 49-74 70-95 (368)
271 4a74_A DNA repair and recombin 87.6 0.36 1.2E-05 43.7 3.7 36 48-83 24-65 (231)
272 3cf0_A Transitional endoplasmi 87.5 0.31 1.1E-05 47.0 3.3 32 49-83 49-80 (301)
273 1xwi_A SKD1 protein; VPS4B, AA 87.5 0.49 1.7E-05 46.2 4.8 33 49-83 45-77 (322)
274 1q3t_A Cytidylate kinase; nucl 87.4 0.42 1.4E-05 44.2 4.0 27 47-73 14-40 (236)
275 3pxg_A Negative regulator of g 87.4 0.32 1.1E-05 50.2 3.5 33 51-83 203-242 (468)
276 2wjy_A Regulator of nonsense t 87.3 0.46 1.6E-05 52.6 4.9 35 49-83 371-406 (800)
277 3tqf_A HPR(Ser) kinase; transf 87.3 0.48 1.7E-05 42.7 4.2 26 50-79 17-42 (181)
278 3ney_A 55 kDa erythrocyte memb 87.3 0.36 1.2E-05 44.1 3.4 24 49-72 19-42 (197)
279 3e2i_A Thymidine kinase; Zn-bi 87.3 0.82 2.8E-05 42.5 5.9 37 49-85 28-64 (219)
280 4ag6_A VIRB4 ATPase, type IV s 87.3 0.63 2.2E-05 46.5 5.5 38 51-90 37-74 (392)
281 3sfz_A APAF-1, apoptotic pepti 87.1 0.33 1.1E-05 55.2 3.7 40 48-87 146-189 (1249)
282 2g3y_A GTP-binding protein GEM 87.0 0.44 1.5E-05 43.6 3.8 41 29-69 17-57 (211)
283 3r20_A Cytidylate kinase; stru 87.0 0.43 1.5E-05 44.8 3.8 25 49-73 9-33 (233)
284 3eph_A TRNA isopentenyltransfe 87.0 0.41 1.4E-05 48.7 3.9 26 49-74 2-27 (409)
285 3eie_A Vacuolar protein sortin 86.9 0.49 1.7E-05 46.0 4.4 32 49-83 51-82 (322)
286 1in4_A RUVB, holliday junction 86.9 0.39 1.3E-05 47.1 3.6 25 49-73 51-75 (334)
287 1nij_A Hypothetical protein YJ 86.7 0.41 1.4E-05 46.7 3.7 34 48-83 3-36 (318)
288 3cr8_A Sulfate adenylyltranfer 86.6 0.43 1.5E-05 50.5 4.0 39 49-89 369-408 (552)
289 3d8b_A Fidgetin-like protein 1 86.6 0.45 1.5E-05 47.1 4.0 32 49-83 117-148 (357)
290 3u61_B DNA polymerase accessor 86.6 0.39 1.3E-05 46.4 3.5 32 49-83 48-79 (324)
291 3bs4_A Uncharacterized protein 86.5 0.99 3.4E-05 43.1 6.1 41 47-89 19-59 (260)
292 2eyu_A Twitching motility prot 86.5 0.87 3E-05 43.2 5.7 35 49-83 25-60 (261)
293 1ojl_A Transcriptional regulat 86.4 0.28 9.4E-06 47.7 2.2 34 50-83 26-59 (304)
294 1tf7_A KAIC; homohexamer, hexa 86.3 0.71 2.4E-05 48.3 5.5 37 47-83 279-315 (525)
295 3hws_A ATP-dependent CLP prote 86.3 0.53 1.8E-05 46.5 4.3 32 49-83 51-82 (363)
296 3lda_A DNA repair protein RAD5 86.2 0.4 1.4E-05 48.7 3.4 41 47-89 176-222 (400)
297 2c9o_A RUVB-like 1; hexameric 86.1 0.55 1.9E-05 48.1 4.5 26 49-74 63-88 (456)
298 2i3b_A HCR-ntpase, human cance 86.1 0.53 1.8E-05 42.5 3.9 27 51-77 3-29 (189)
299 3nwj_A ATSK2; P loop, shikimat 86.0 0.43 1.5E-05 45.2 3.3 25 49-73 48-72 (250)
300 2r62_A Cell division protease 85.9 0.26 9E-06 46.2 1.7 23 51-73 46-68 (268)
301 1jr3_A DNA polymerase III subu 85.8 0.55 1.9E-05 45.9 4.1 27 49-75 38-64 (373)
302 4e22_A Cytidylate kinase; P-lo 85.8 0.49 1.7E-05 44.4 3.6 25 49-73 27-51 (252)
303 1iqp_A RFCS; clamp loader, ext 85.7 0.5 1.7E-05 45.1 3.7 26 52-77 49-74 (327)
304 1sxj_B Activator 1 37 kDa subu 85.6 0.5 1.7E-05 45.1 3.6 32 52-83 45-78 (323)
305 3jvv_A Twitching mobility prot 85.6 0.96 3.3E-05 45.1 5.8 35 49-83 123-158 (356)
306 2xzl_A ATP-dependent helicase 85.6 0.8 2.7E-05 50.7 5.6 35 49-83 375-410 (802)
307 2ewv_A Twitching motility prot 85.4 0.94 3.2E-05 45.3 5.7 36 48-83 135-171 (372)
308 2r44_A Uncharacterized protein 85.1 0.84 2.9E-05 44.2 5.0 42 51-97 48-91 (331)
309 2ocp_A DGK, deoxyguanosine kin 85.1 0.5 1.7E-05 43.8 3.2 26 49-74 2-27 (241)
310 1ixz_A ATP-dependent metallopr 85.1 0.48 1.6E-05 44.1 3.1 22 52-73 52-73 (254)
311 1of1_A Thymidine kinase; trans 85.0 0.59 2E-05 47.1 3.9 29 49-77 49-77 (376)
312 1sxj_C Activator 1 40 kDa subu 84.9 0.32 1.1E-05 47.6 1.9 32 52-83 49-80 (340)
313 1pzn_A RAD51, DNA repair and r 84.8 0.56 1.9E-05 46.5 3.6 41 47-89 129-175 (349)
314 4b4t_K 26S protease regulatory 84.7 0.7 2.4E-05 47.3 4.4 32 49-83 206-237 (428)
315 1lvg_A Guanylate kinase, GMP k 84.7 0.54 1.8E-05 42.4 3.2 25 49-73 4-28 (198)
316 1s96_A Guanylate kinase, GMP k 84.7 0.57 2E-05 43.3 3.4 25 49-73 16-40 (219)
317 1qvr_A CLPB protein; coiled co 84.7 0.7 2.4E-05 51.4 4.7 34 50-83 192-232 (854)
318 1sxj_D Activator 1 41 kDa subu 84.5 0.59 2E-05 45.3 3.6 32 52-83 61-95 (353)
319 3rsc_A CALG2; TDP, enediyne, s 84.5 3.3 0.00011 40.8 9.2 39 44-83 16-54 (415)
320 1ye8_A Protein THEP1, hypothet 84.4 0.71 2.4E-05 41.1 3.8 23 51-73 2-24 (178)
321 3co5_A Putative two-component 84.2 0.22 7.5E-06 42.5 0.3 22 52-73 30-51 (143)
322 3pxi_A Negative regulator of g 84.1 0.69 2.4E-05 50.6 4.3 34 50-83 522-555 (758)
323 2chq_A Replication factor C sm 84.0 0.69 2.4E-05 43.9 3.8 26 52-77 41-66 (319)
324 2vo1_A CTP synthase 1; pyrimid 83.9 1 3.4E-05 43.2 4.7 41 47-89 21-63 (295)
325 2vp4_A Deoxynucleoside kinase; 83.9 0.87 3E-05 41.9 4.3 32 48-83 19-50 (230)
326 2qp9_X Vacuolar protein sortin 83.9 0.64 2.2E-05 46.0 3.6 32 49-83 84-115 (355)
327 3pfi_A Holliday junction ATP-d 83.8 0.57 1.9E-05 45.4 3.1 31 50-83 56-86 (338)
328 2zan_A Vacuolar protein sortin 83.5 0.9 3.1E-05 46.5 4.6 33 49-83 167-199 (444)
329 3lnc_A Guanylate kinase, GMP k 83.4 0.4 1.4E-05 44.0 1.8 25 49-73 27-52 (231)
330 1a5t_A Delta prime, HOLB; zinc 83.4 0.85 2.9E-05 44.6 4.2 28 49-76 24-51 (334)
331 3kta_A Chromosome segregation 83.4 0.66 2.2E-05 40.6 3.1 25 50-74 27-51 (182)
332 3te6_A Regulatory protein SIR3 83.3 0.77 2.6E-05 45.1 3.8 28 49-76 45-72 (318)
333 3con_A GTPase NRAS; structural 83.2 0.75 2.6E-05 40.1 3.4 20 51-70 23-42 (190)
334 2fna_A Conserved hypothetical 83.1 0.79 2.7E-05 44.1 3.8 31 50-83 31-61 (357)
335 1c9k_A COBU, adenosylcobinamid 83.0 0.57 1.9E-05 42.3 2.5 29 51-83 1-29 (180)
336 1sxj_E Activator 1 40 kDa subu 83.0 0.76 2.6E-05 44.7 3.7 24 52-75 39-62 (354)
337 1dek_A Deoxynucleoside monopho 82.9 0.8 2.7E-05 43.1 3.7 29 49-80 1-29 (241)
338 4b4t_M 26S protease regulatory 82.9 0.93 3.2E-05 46.5 4.4 32 49-83 215-246 (434)
339 1iy2_A ATP-dependent metallopr 82.8 0.67 2.3E-05 43.9 3.1 22 52-73 76-97 (278)
340 3vfd_A Spastin; ATPase, microt 82.5 1.3 4.5E-05 44.1 5.3 32 49-83 148-179 (389)
341 1qvr_A CLPB protein; coiled co 82.4 1.1 3.9E-05 49.7 5.2 38 49-88 588-625 (854)
342 4b4t_L 26S protease subunit RP 82.4 1 3.4E-05 46.3 4.4 32 49-83 215-246 (437)
343 2x8a_A Nuclear valosin-contain 82.2 0.72 2.5E-05 44.0 3.1 29 52-83 47-75 (274)
344 2h92_A Cytidylate kinase; ross 82.0 0.69 2.4E-05 41.8 2.7 33 50-89 4-36 (219)
345 3hdt_A Putative kinase; struct 82.0 1 3.6E-05 41.7 4.0 33 49-88 14-46 (223)
346 2dyk_A GTP-binding protein; GT 81.8 1 3.6E-05 37.7 3.7 21 50-70 2-22 (161)
347 1p9r_A General secretion pathw 81.6 1.2 4.1E-05 45.4 4.7 36 48-83 166-201 (418)
348 2ce2_X GTPase HRAS; signaling 81.4 0.8 2.7E-05 38.3 2.8 19 52-70 6-24 (166)
349 3tmk_A Thymidylate kinase; pho 81.3 1 3.6E-05 41.5 3.7 27 49-75 5-31 (216)
350 1znw_A Guanylate kinase, GMP k 81.1 0.96 3.3E-05 40.8 3.4 25 49-73 20-44 (207)
351 3pvs_A Replication-associated 81.0 0.79 2.7E-05 47.1 3.1 24 50-73 51-74 (447)
352 4gp7_A Metallophosphoesterase; 80.9 0.82 2.8E-05 40.1 2.7 21 49-69 9-29 (171)
353 3fdi_A Uncharacterized protein 80.9 0.87 3E-05 41.3 3.0 29 49-80 6-34 (201)
354 1p5z_B DCK, deoxycytidine kina 80.7 0.4 1.4E-05 45.1 0.7 25 49-73 24-48 (263)
355 1z6g_A Guanylate kinase; struc 80.6 0.83 2.8E-05 41.8 2.8 25 49-73 23-47 (218)
356 4b4t_J 26S protease regulatory 80.5 1.1 3.7E-05 45.6 3.8 32 49-83 182-213 (405)
357 3c5c_A RAS-like protein 12; GD 80.4 1.2 4.1E-05 39.1 3.7 31 40-70 12-42 (187)
358 4b4t_H 26S protease regulatory 80.3 1.1 3.7E-05 46.4 3.8 32 49-83 243-274 (467)
359 1g8p_A Magnesium-chelatase 38 79.6 0.56 1.9E-05 45.4 1.3 23 52-74 48-70 (350)
360 2qen_A Walker-type ATPase; unk 79.6 1.1 3.8E-05 43.0 3.5 29 50-83 32-60 (350)
361 3b6e_A Interferon-induced heli 79.6 1.3 4.3E-05 39.4 3.6 33 51-83 50-88 (216)
362 3m6a_A ATP-dependent protease 79.1 1.2 4.2E-05 46.8 3.9 25 49-73 108-132 (543)
363 1sky_E F1-ATPase, F1-ATP synth 79.0 6.3 0.00022 40.7 9.1 25 52-76 154-178 (473)
364 3pxi_A Negative regulator of g 78.8 1.1 3.7E-05 49.0 3.5 25 51-75 203-227 (758)
365 1svm_A Large T antigen; AAA+ f 78.7 1.2 4.2E-05 44.7 3.5 25 49-73 169-193 (377)
366 1z2a_A RAS-related protein RAB 78.7 1.2 4.2E-05 37.5 3.1 19 52-70 8-26 (168)
367 1e9r_A Conjugal transfer prote 78.4 1.7 5.9E-05 43.9 4.6 41 49-91 53-93 (437)
368 1htw_A HI0065; nucleotide-bind 78.2 1.4 5E-05 38.4 3.5 29 49-77 33-61 (158)
369 1r6b_X CLPA protein; AAA+, N-t 78.1 2.1 7E-05 46.7 5.4 32 49-83 488-519 (758)
370 1rif_A DAR protein, DNA helica 78.1 1.9 6.5E-05 40.7 4.5 31 53-83 132-163 (282)
371 4b4t_I 26S protease regulatory 78.1 1.5 5E-05 45.0 3.9 32 49-83 216-247 (437)
372 1knx_A Probable HPR(Ser) kinas 77.9 1.2 4.3E-05 43.5 3.2 27 50-80 148-174 (312)
373 4bas_A ADP-ribosylation factor 77.7 1.5 5.2E-05 38.2 3.5 22 48-69 16-37 (199)
374 2a9k_A RAS-related protein RAL 77.6 1.6 5.6E-05 37.4 3.6 21 50-70 19-39 (187)
375 2wjg_A FEOB, ferrous iron tran 77.3 2.1 7.3E-05 36.9 4.3 21 50-70 8-28 (188)
376 2wji_A Ferrous iron transport 77.3 1.7 5.8E-05 37.1 3.6 21 50-70 4-24 (165)
377 2ga8_A Hypothetical 39.9 kDa p 76.9 1.8 6.2E-05 43.2 4.1 25 50-74 25-49 (359)
378 1f2t_A RAD50 ABC-ATPase; DNA d 76.9 2.2 7.4E-05 36.7 4.2 26 49-74 23-48 (149)
379 3oti_A CALG3; calicheamicin, T 76.8 8.1 0.00028 37.8 8.9 37 46-83 18-54 (398)
380 1g41_A Heat shock protein HSLU 76.3 1.4 4.7E-05 45.4 3.1 31 50-83 51-81 (444)
381 2fz4_A DNA repair protein RAD2 76.3 1.8 6.2E-05 40.1 3.7 29 52-83 111-139 (237)
382 1r6b_X CLPA protein; AAA+, N-t 75.9 2.5 8.5E-05 46.0 5.3 28 49-76 207-234 (758)
383 3pqc_A Probable GTP-binding pr 75.7 2.5 8.6E-05 36.5 4.4 19 51-69 25-43 (195)
384 2zej_A Dardarin, leucine-rich 75.6 1.4 4.8E-05 38.4 2.6 19 52-70 5-23 (184)
385 3qks_A DNA double-strand break 75.3 2.4 8.1E-05 38.3 4.2 27 49-75 23-49 (203)
386 1u8z_A RAS-related protein RAL 75.1 1.8 6E-05 36.3 3.1 20 51-70 6-25 (168)
387 2ged_A SR-beta, signal recogni 75.1 1.7 5.9E-05 37.8 3.1 22 49-70 48-69 (193)
388 2erx_A GTP-binding protein DI- 75.0 1.8 6.2E-05 36.4 3.1 19 52-70 6-24 (172)
389 3hu3_A Transitional endoplasmi 74.0 2.7 9.2E-05 43.6 4.7 32 49-83 238-269 (489)
390 3lfu_A DNA helicase II; SF1 he 73.1 2.8 9.6E-05 44.4 4.7 32 52-83 25-60 (647)
391 2v9p_A Replication protein E1; 72.7 2.7 9.2E-05 40.9 4.1 27 49-77 126-152 (305)
392 1u0j_A DNA replication protein 72.7 2.3 7.9E-05 40.7 3.5 25 49-73 104-128 (267)
393 2ce7_A Cell division protein F 72.6 2.7 9.2E-05 43.6 4.2 31 50-83 50-80 (476)
394 2nzj_A GTP-binding protein REM 72.6 2.2 7.6E-05 36.1 3.1 19 52-70 7-25 (175)
395 1z08_A RAS-related protein RAB 72.4 2.3 7.8E-05 35.9 3.1 20 51-70 8-27 (170)
396 2qu8_A Putative nucleolar GTP- 72.3 3.2 0.00011 37.5 4.3 22 49-70 29-50 (228)
397 3ged_A Short-chain dehydrogena 72.3 7.3 0.00025 36.5 6.9 36 48-90 1-37 (247)
398 1z0j_A RAB-22, RAS-related pro 72.0 2.4 8E-05 35.7 3.1 19 52-70 9-27 (170)
399 2gco_A H9, RHO-related GTP-bin 72.0 2.9 0.0001 36.9 3.9 20 51-70 27-46 (201)
400 4fzr_A SSFS6; structural genom 71.8 13 0.00046 36.2 9.0 36 47-83 14-49 (398)
401 1kao_A RAP2A; GTP-binding prot 71.5 2.5 8.5E-05 35.3 3.1 19 52-70 6-24 (167)
402 2f9l_A RAB11B, member RAS onco 71.5 2.3 8E-05 37.5 3.1 21 50-70 6-26 (199)
403 1r2q_A RAS-related protein RAB 71.4 2.4 8.3E-05 35.5 3.1 20 51-70 8-27 (170)
404 1nrj_B SR-beta, signal recogni 71.4 2.3 7.9E-05 37.9 3.1 21 50-70 13-33 (218)
405 2lkc_A Translation initiation 71.4 3 0.0001 35.5 3.7 22 49-70 8-29 (178)
406 2v6i_A RNA helicase; membrane, 71.4 2.4 8.3E-05 42.9 3.5 34 50-83 3-37 (431)
407 2g0t_A Conserved hypothetical 71.2 4.8 0.00017 40.0 5.5 35 49-83 169-204 (350)
408 1r8s_A ADP-ribosylation factor 71.0 2.5 8.6E-05 35.4 3.1 19 52-70 3-21 (164)
409 1e2k_A Thymidine kinase; trans 71.0 2.4 8.3E-05 41.8 3.3 29 49-77 4-32 (331)
410 3q85_A GTP-binding protein REM 70.9 2.5 8.7E-05 35.6 3.1 19 52-70 5-23 (169)
411 3lxx_A GTPase IMAP family memb 70.9 2.9 9.9E-05 38.3 3.7 22 49-70 29-50 (239)
412 1wms_A RAB-9, RAB9, RAS-relate 70.8 2.6 8.8E-05 35.9 3.1 20 51-70 9-28 (177)
413 1w78_A FOLC bifunctional prote 70.7 5.3 0.00018 40.2 5.9 33 49-83 49-81 (422)
414 1ek0_A Protein (GTP-binding pr 70.7 2.6 8.9E-05 35.4 3.1 19 52-70 6-24 (170)
415 4dsu_A GTPase KRAS, isoform 2B 70.6 2.6 8.9E-05 36.2 3.1 19 52-70 7-25 (189)
416 4dkx_A RAS-related protein RAB 70.6 2.8 9.5E-05 38.3 3.5 21 49-70 14-34 (216)
417 1g16_A RAS-related protein SEC 70.5 2.4 8.1E-05 35.7 2.8 19 52-70 6-24 (170)
418 3k1j_A LON protease, ATP-depen 70.5 2 6.7E-05 45.7 2.7 34 50-83 61-94 (604)
419 2cxx_A Probable GTP-binding pr 70.4 2.2 7.4E-05 36.8 2.6 19 52-70 4-22 (190)
420 4i1u_A Dephospho-COA kinase; s 70.4 2.3 7.7E-05 39.2 2.8 33 49-89 9-41 (210)
421 3q72_A GTP-binding protein RAD 70.4 2.3 7.7E-05 35.8 2.6 18 52-69 5-22 (166)
422 1oix_A RAS-related protein RAB 70.3 2.6 8.8E-05 37.1 3.1 22 49-70 29-50 (191)
423 1z0f_A RAB14, member RAS oncog 70.3 2.6 9E-05 35.7 3.1 21 50-70 16-36 (179)
424 3nrs_A Dihydrofolate:folylpoly 70.2 5.9 0.0002 40.2 6.2 34 48-83 51-84 (437)
425 3kkq_A RAS-related protein M-R 70.2 3.7 0.00013 35.2 4.1 22 49-70 18-39 (183)
426 1ky3_A GTP-binding protein YPT 70.1 2.7 9.3E-05 35.7 3.1 21 50-70 9-29 (182)
427 2h17_A ADP-ribosylation factor 70.1 2.5 8.4E-05 36.6 2.9 22 49-70 21-42 (181)
428 2ck3_D ATP synthase subunit be 70.1 16 0.00054 37.8 9.3 27 49-76 154-180 (482)
429 2onk_A Molybdate/tungstate ABC 70.0 2.8 9.6E-05 39.1 3.4 24 50-73 25-48 (240)
430 1tf7_A KAIC; homohexamer, hexa 70.0 3.7 0.00013 42.8 4.6 36 48-83 38-74 (525)
431 2fn4_A P23, RAS-related protei 70.0 2.5 8.5E-05 36.0 2.8 21 50-70 10-30 (181)
432 3tw8_B RAS-related protein RAB 70.0 2.6 8.9E-05 35.8 3.0 20 51-70 11-30 (181)
433 1c1y_A RAS-related protein RAP 69.7 2.8 9.6E-05 35.1 3.1 19 52-70 6-24 (167)
434 1upt_A ARL1, ADP-ribosylation 69.7 2.6 9E-05 35.5 2.9 21 50-70 8-28 (171)
435 3b85_A Phosphate starvation-in 69.6 2.2 7.6E-05 38.9 2.5 29 49-77 22-50 (208)
436 2oca_A DAR protein, ATP-depend 69.5 4.1 0.00014 41.6 4.9 33 51-83 130-163 (510)
437 1svi_A GTP-binding protein YSX 69.5 3.2 0.00011 36.0 3.5 21 50-70 24-44 (195)
438 3nbx_X ATPase RAVA; AAA+ ATPas 69.3 1.9 6.5E-05 45.0 2.2 23 51-73 43-65 (500)
439 1jbw_A Folylpolyglutamate synt 69.2 4.9 0.00017 40.6 5.3 33 49-83 39-71 (428)
440 2f7s_A C25KG, RAS-related prot 69.2 3.8 0.00013 36.4 4.0 20 51-70 27-46 (217)
441 3bc1_A RAS-related protein RAB 69.0 2.9 9.9E-05 36.0 3.1 20 51-70 13-32 (195)
442 1ko7_A HPR kinase/phosphatase; 69.0 2.8 9.6E-05 41.0 3.2 27 49-79 144-170 (314)
443 1pui_A ENGB, probable GTP-bind 68.8 2.5 8.7E-05 37.3 2.7 22 49-70 26-47 (210)
444 2hup_A RAS-related protein RAB 68.8 3.1 0.00011 36.8 3.3 20 51-70 31-50 (201)
445 2dhr_A FTSH; AAA+ protein, hex 68.8 2.5 8.6E-05 44.0 3.0 30 51-83 66-95 (499)
446 3lxw_A GTPase IMAP family memb 68.7 3.2 0.00011 38.6 3.5 21 50-70 22-42 (247)
447 2hxs_A RAB-26, RAS-related pro 68.7 4.6 0.00016 34.3 4.3 20 51-70 8-27 (178)
448 2cbz_A Multidrug resistance-as 68.7 2.7 9.3E-05 39.0 3.0 25 49-73 31-55 (237)
449 3ijr_A Oxidoreductase, short c 68.7 6.2 0.00021 37.4 5.6 33 50-89 48-81 (291)
450 1mv5_A LMRA, multidrug resista 68.7 3.1 0.00011 38.7 3.4 26 49-74 28-53 (243)
451 3ihw_A Centg3; RAS, centaurin, 68.6 4.2 0.00015 35.4 4.1 20 51-70 22-41 (184)
452 4ehx_A Tetraacyldisaccharide 4 68.5 2.6 8.8E-05 41.3 2.9 25 57-83 46-70 (315)
453 3qf7_A RAD50; ABC-ATPase, ATPa 68.5 3.7 0.00013 40.7 4.1 30 49-78 23-52 (365)
454 1m7b_A RND3/RHOE small GTP-bin 68.3 2.8 9.4E-05 36.4 2.8 19 52-70 10-28 (184)
455 2y8e_A RAB-protein 6, GH09086P 68.2 2.8 9.6E-05 35.6 2.8 19 52-70 17-35 (179)
456 2cjw_A GTP-binding protein GEM 68.2 3 0.0001 36.7 3.1 20 51-70 8-27 (192)
457 2g6b_A RAS-related protein RAB 68.1 3.1 0.00011 35.4 3.1 20 51-70 12-31 (180)
458 2l8b_A Protein TRAI, DNA helic 68.1 8 0.00027 34.9 5.8 47 49-97 51-98 (189)
459 3qkt_A DNA double-strand break 68.1 4.1 0.00014 39.8 4.3 27 49-75 23-49 (339)
460 3gmt_A Adenylate kinase; ssgci 67.9 3.6 0.00012 38.4 3.6 24 49-73 9-32 (230)
461 2gj8_A MNME, tRNA modification 67.8 2.9 9.8E-05 36.1 2.8 21 50-70 5-25 (172)
462 3bwd_D RAC-like GTP-binding pr 67.7 3.2 0.00011 35.4 3.1 21 49-70 9-29 (182)
463 2bme_A RAB4A, RAS-related prot 67.5 2.9 0.0001 35.9 2.8 20 51-70 12-31 (186)
464 2pcj_A ABC transporter, lipopr 67.5 2.6 9E-05 38.8 2.6 24 49-72 30-53 (224)
465 2d2e_A SUFC protein; ABC-ATPas 67.4 3.3 0.00011 38.7 3.3 24 49-72 29-52 (250)
466 2bov_A RAla, RAS-related prote 67.1 4.4 0.00015 35.4 3.9 21 50-70 15-35 (206)
467 2atv_A RERG, RAS-like estrogen 67.1 3.3 0.00011 36.2 3.1 20 51-70 30-49 (196)
468 2efe_B Small GTP-binding prote 67.0 3.5 0.00012 35.2 3.1 20 51-70 14-33 (181)
469 3oiy_A Reverse gyrase helicase 66.9 4.2 0.00014 40.3 4.2 33 51-83 38-70 (414)
470 1hv8_A Putative ATP-dependent 66.8 4.1 0.00014 39.0 4.0 34 50-83 45-80 (367)
471 1vg8_A RAS-related protein RAB 66.8 3.4 0.00012 36.2 3.1 21 50-70 9-29 (207)
472 3tif_A Uncharacterized ABC tra 66.8 3.2 0.00011 38.5 3.0 25 49-73 31-55 (235)
473 2pl3_A Probable ATP-dependent 66.7 6.6 0.00023 35.5 5.2 32 52-83 65-103 (236)
474 2gza_A Type IV secretion syste 66.6 2.4 8.2E-05 42.0 2.3 34 49-83 175-208 (361)
475 1o5z_A Folylpolyglutamate synt 66.5 6.1 0.00021 40.2 5.4 33 49-83 52-84 (442)
476 2zu0_C Probable ATP-dependent 66.5 3.8 0.00013 38.8 3.6 24 49-72 46-69 (267)
477 3clv_A RAB5 protein, putative; 66.4 3.6 0.00012 35.5 3.1 19 52-70 10-28 (208)
478 2iwr_A Centaurin gamma 1; ANK 66.4 2.8 9.5E-05 35.8 2.4 19 52-70 10-28 (178)
479 1m2o_B GTP-binding protein SAR 66.4 3.2 0.00011 36.4 2.8 20 51-70 25-44 (190)
480 1zbd_A Rabphilin-3A; G protein 66.3 3.5 0.00012 36.2 3.1 20 51-70 10-29 (203)
481 3t5g_A GTP-binding protein RHE 66.1 3.3 0.00011 35.5 2.8 21 50-70 7-27 (181)
482 2gno_A DNA polymerase III, gam 66.1 3.6 0.00012 39.8 3.3 25 49-73 18-42 (305)
483 2a5j_A RAS-related protein RAB 66.0 6.2 0.00021 34.3 4.7 20 51-70 23-42 (191)
484 1mh1_A RAC1; GTP-binding, GTPa 66.0 3.6 0.00012 35.1 3.1 20 51-70 7-26 (186)
485 1ypw_A Transitional endoplasmi 65.9 2 6.9E-05 47.4 1.7 25 49-73 511-535 (806)
486 1ypw_A Transitional endoplasmi 65.9 3.3 0.00011 45.7 3.4 32 49-83 238-269 (806)
487 2npi_A Protein CLP1; CLP1-PCF1 65.9 2.6 8.7E-05 43.5 2.3 38 50-89 139-177 (460)
488 2gf9_A RAS-related protein RAB 65.9 5.3 0.00018 34.6 4.2 21 50-70 23-43 (189)
489 2fh5_B SR-beta, signal recogni 65.8 3.6 0.00012 36.5 3.1 21 50-70 8-28 (214)
490 2pze_A Cystic fibrosis transme 65.7 3.1 0.00011 38.4 2.7 25 49-73 34-58 (229)
491 2olj_A Amino acid ABC transpor 65.7 3.4 0.00012 39.1 3.1 25 49-73 50-74 (263)
492 2fv8_A H6, RHO-related GTP-bin 65.7 3.1 0.00011 36.9 2.7 20 51-70 27-46 (207)
493 1b0u_A Histidine permease; ABC 65.7 3.4 0.00012 39.0 3.1 24 49-72 32-55 (262)
494 2gxq_A Heat resistant RNA depe 65.6 5.9 0.0002 34.8 4.5 32 52-83 41-78 (207)
495 3gqb_B V-type ATP synthase bet 65.5 17 0.00057 37.4 8.3 25 49-74 148-172 (464)
496 3cbq_A GTP-binding protein REM 65.4 2.9 0.0001 36.9 2.4 20 50-69 24-43 (195)
497 1ji0_A ABC transporter; ATP bi 65.4 3.2 0.00011 38.5 2.8 25 49-73 32-56 (240)
498 2il1_A RAB12; G-protein, GDP, 65.4 3.5 0.00012 36.1 2.9 18 52-69 29-46 (192)
499 1lw7_A Transcriptional regulat 65.3 3.7 0.00013 40.4 3.4 25 49-73 170-194 (365)
500 2ghi_A Transport protein; mult 65.3 3.5 0.00012 38.9 3.0 25 49-73 46-70 (260)
No 1
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=5.4e-68 Score=541.88 Aligned_cols=355 Identities=30% Similarity=0.525 Sum_probs=291.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
|++|++++|||||||||+|+++|.++|++|+|||+| |+ | ++++.||.+.+.+|+.+.+||+++++|+...++++|
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllv--d~-~~~~l~~~~~~~~~~~~~~v~~~L~~~eid~~~~~~~~~ 77 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLA--GL-AEPVLPLLLEQTLTPDPQQIAPNLEVVQFQSSVLLERNW 77 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEE--EC-SCSHHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEE--eC-CCCChHHhhCCCCCCCcccccccccccccCHHHHHHHHH
Confidence 689999999999999999999999999999999999 77 6 499999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
..+........... .+..+..+++...||++|++++.++.++++ +++||+|||||||||||||||++|
T Consensus 78 ~~~~~~~~~~l~~~-~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~-----------~~~yD~VIvDtpPtg~tLrlL~lP 145 (374)
T 3igf_A 78 EEVKKLEAQYLRTP-IIKEVYGQELVVLPGMDSALALNAIREYDA-----------SGKYDTIVYDGTGDAFTLRMLGLP 145 (374)
T ss_dssp HHHHHHHHHHCSSC-SSSSSCGGGCCCCTTHHHHHHHHHHHHHHH-----------TTCCSEEEEECCCSHHHHHHHTHH
T ss_pred HHHHHHHHhhcccc-cccccchhhhccCCCHHHHHHHHHHHHHHh-----------ccCCCEEEEeCCCChHHhhhhhhh
Confidence 99988776655333 346777888999999999998888777653 467999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccc--chhhHHHHHHhhhccCCCCCCCCCChHHHH---HHHHHHHHHHHHhhcCCCceEE
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLT--APSLLKLVDEALSISGRRPLLNGNTSAEIW---DAMDRMLERGSSALAEPHKFGC 280 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~l~~~~~~~~~~L~dp~~t~v 280 (449)
+.+.||++++++++++.++++.+ .+++.++.+..++.+ .+.|+++ +++.+.+++++++|+||++|++
T Consensus 146 ~~l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~--------~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~ 217 (374)
T 3igf_A 146 ESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVN--------WTADNFAQPTNQVNNFLDKGKEALADPKRVAA 217 (374)
T ss_dssp HHHHHHHHHTTSCC-------------------------------------------CHHHHHHHHHHHHHHHCTTTEEE
T ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCC--------CchHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence 99999999999998886444433 333333322222210 2234444 4556678899999999999999
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccHHHHHHHHHhcCCCCeeeccCCCCCCccchhhhhccccH
Q 013114 281 FLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNFSPLPLSFLPHLPTDSSLDWNTIMLNPAG 360 (449)
Q Consensus 281 ~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~~~l~~i~~~F~~lpi~~vP~~~~e~~~~~~~~g~~~L~ 360 (449)
++||+|| ++++.|++|++++|+.+|+++.++|+|+ + .|+++|++.|.++||..+|++++| .|+
T Consensus 218 vlVt~pe-~~sl~ea~r~~~~L~~~gi~v~gvVvN~-~----~~l~~i~~~F~~~~v~~vpl~~~e-----------~l~ 280 (374)
T 3igf_A 218 FLVTTAD-PLEVVSVRYLWGSAQQIGLTIGGVIQVS-S----QTEGDLSAEFTPLSVTVVPDVTKG-----------DWQ 280 (374)
T ss_dssp EEEECSC-HHHHHHHHHHHHHHHHHTCCEEEEEECC-C----SCCCCCGGGSTTSCEEECCCCBTT-----------BCH
T ss_pred EEEECCC-ccHHHHHHHHHHHHHHcCCCccEEEEcC-H----HHHHHHHHhcCCCceEECCCCChh-----------HHH
Confidence 9999999 7999999999999999999999999998 2 178899999999999999999886 555
Q ss_pred HHHHHHhccccccc-ccC--CcceEEecCceEEEEEcCCCCCCceEEEeecCCCeEEEEECCeeeeecCCccccc-Cccc
Q 013114 361 KEARDLLSLQAKRS-SSL--MSSVKFDAAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEAGDQRRVIHLPPQIQG-KVGG 436 (449)
Q Consensus 361 ~la~~lf~~~~dp~-~~~--~~~~~i~~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~g~~rR~i~LP~~L~~-~~~~ 436 (449)
++++.+ + +|. ..+ .+|+.|++.+|.++++|||++|++|+|+|+ ||||+|++|+|||+|.||+.|++ ++.|
T Consensus 281 ~l~~~l-~---~p~~~~~~~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~~--gdeL~v~~g~~rR~i~LP~~L~~~~v~~ 354 (374)
T 3igf_A 281 PLIDAL-P---NFVEQAEQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQY--GPEVTVEAGDQRRNIFLPPALSGRPITG 354 (374)
T ss_dssp HHHHHC-C---CHHHHHHHSCCSEEEETTTTEEEEECTTCCGGGCEEEEE--TTEEEEEETTEEEEEECCTTTTTCCEEE
T ss_pred HHHHHh-c---CccccccCCCCCEEEEeccEEEEEECCCCCHHHeEEEEE--CCeEEEEECCEeecccCCHHHcCCCccc
Confidence 666655 3 254 332 489999999999999999999999999986 99999999999999999999999 6999
Q ss_pred eEEeCCEEEEEc
Q 013114 437 ARFIERNLIVTM 448 (449)
Q Consensus 437 A~~~~g~L~I~f 448 (449)
|+|+||+|+|+|
T Consensus 355 A~~~~~~L~i~~ 366 (374)
T 3igf_A 355 AKFQNNYLIISF 366 (374)
T ss_dssp EEEETTEEEEEE
T ss_pred cEEECCEEEEEE
Confidence 999999999998
No 2
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=4.7e-47 Score=382.55 Aligned_cols=293 Identities=18% Similarity=0.185 Sum_probs=201.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhhh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMFL 122 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~ 122 (449)
++++|++++|||||||||+|+|+|.++|++|+||||| |+|| ++++.||.+.+..++.+. +||+++++|+...++
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli--d~D~~~~l~~~l~~~~~~~~~~v~~~~~L~~~~id~~~~~~ 91 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL--STDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQ 91 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE--ECCSSCHHHHHHTSCCCSSCEECTTCSSEEEEECCC-----
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE--ECCCCCChhHHhccccCCCceeecCCCCceeeecCHHHHHH
Confidence 3479999999999999999999999999999999999 8887 499999999888888885 899999999999998
Q ss_pred hhHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHh
Q 013114 123 EPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMI 202 (449)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL 202 (449)
+++......... ...+ + .++.+.....||++|++++.++.++++ +++||+|||||||||||||||
T Consensus 92 ~~~~~~~~~~~~--~~~~-l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~-----------~~~yD~VIiDtpPtg~tLrlL 156 (334)
T 3iqw_A 92 DLLAGQTGDGDA--GMGG-V-GVMQDLAYAIPGIDEAMSFAEVLKQVN-----------SLSYETIVFDTAPTGHTLRFL 156 (334)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHH-----------TSSCSEEEEECCCHHHHHHHH
T ss_pred HHHHHhhccccc--cccc-c-hhhHHhhcCCCCHHHHHHHHHHHHHHH-----------hCCCCEEEEeCCCCHHHHHHH
Confidence 888665543211 0111 2 333344456899999988877777654 468999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 013114 203 GVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFL 282 (449)
Q Consensus 203 ~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~L 282 (449)
++|+.+.||+++++++.+++ +.+.+|+. .+++... .+.......+.++++.+.+++++++|+||+.|+|++
T Consensus 157 ~lp~~l~~~l~~~~~~~~~~--~~~~~~~~-----~~~g~~p--~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vl 227 (334)
T 3iqw_A 157 QFPTVLEKALAKVSQLSGQY--GSLLNGIL-----GGSGTLP--NGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVC 227 (334)
T ss_dssp THHHHC--------------------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HhhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEE
Confidence 99999999999999887764 43333321 1111000 000001123345566667899999999999999999
Q ss_pred EecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc---------c------ccHHHHHHHHHhcCC-CCeeeccCCCCC
Q 013114 283 VMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP---------H------LDEESAERVRKNFSP-LPLSFLPHLPTD 346 (449)
Q Consensus 283 Vt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~---------~------~q~~~l~~i~~~F~~-lpi~~vP~~~~e 346 (449)
||+|| .+++.|++|+++.|+.+|+++.++|+|+.. + .|+.|+++|.+.|.+ +|++++|+++.|
T Consensus 228 Vt~pe-~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~~~e 306 (334)
T 3iqw_A 228 VCIPE-FLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEE 306 (334)
T ss_dssp EECSS-HHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSC
T ss_pred EECCC-ccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCCCCC
Confidence 99999 799999999999999999999999999421 1 245699999999998 999999999999
Q ss_pred CccchhhhhccccHHHHHHHhcccccc
Q 013114 347 SSLDWNTIMLNPAGKEARDLLSLQAKR 373 (449)
Q Consensus 347 ~~~~~~~~g~~~L~~la~~lf~~~~dp 373 (449)
| +|++.|+.+++.+|+. .+|
T Consensus 307 ~------~G~~~L~~~~~~l~~~-~~~ 326 (334)
T 3iqw_A 307 V------RGKERLEKFSEMLIKP-FVP 326 (334)
T ss_dssp C------CHHHHHHHHHHHHHSC-CCC
T ss_pred C------CCHHHHHHHHHHHcCC-CCC
Confidence 9 9999999999999973 344
No 3
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.8e-45 Score=369.52 Aligned_cols=291 Identities=21% Similarity=0.318 Sum_probs=229.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
|++|++++|||||||||+|+|+|.++|++|+||||| |+|| ++++.||.+.+..++.+.++|++.++|+...++++|
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv--D~D~~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI--STDPAHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCSSCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE--eCCCCcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHH
Confidence 479999999999999999999999999999999999 8887 599999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCcc--ccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhh
Q 013114 126 NWLKQADARLNMTQGVLGGVV--GEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIG 203 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~--~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~ 203 (449)
..+......+. ..+ +..+. .+.+...||++|++.+.++.++++ +++||+|||||||+++++|+|+
T Consensus 91 ~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~-----------~~~yD~VIiDtpPt~~~l~lL~ 157 (324)
T 3zq6_A 91 AKLQEQAAMNP-GMG-LDMLQDQMDMASMSPGIDEAAAFDQFLRYMT-----------TDEYDIVIFDTAPTGHTLRLLS 157 (324)
T ss_dssp HHC-----------------------CTTSTTHHHHHHHHHHHHHHH-----------HCCCSEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHhhc-ccc-hhhhHHHHHHhccCCChHHHHHHHHHHHHHH-----------hCCCCEEEECCCCCHHHHHHHH
Confidence 88776544332 122 12122 134667899999988877777664 3679999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHH---HHHHHHHHHhhcCCCceEE
Q 013114 204 VSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAM---DRMLERGSSALAEPHKFGC 280 (449)
Q Consensus 204 lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l---~~~~~~~~~~L~dp~~t~v 280 (449)
+|+.+.||++++++++++. .++.+++ +.+++..+.. .+.+++++.+ .+.+++++++|+||+.|.+
T Consensus 158 ~p~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~ 225 (324)
T 3zq6_A 158 FPEIMDSWVGKMIKIRRQI--GSMAKAF-----KNILPFMGDE-----EEEDRALQDMEATKKQINAAREVMSDPERTSF 225 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHTTT-----TTTSCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHH-----hhhccccCCc-----ccchHHHHHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 9999999999999988875 2222221 0111100000 1124555544 4558899999999999999
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecC-------cc------ccHHHHHHHHHhcCCCCeeeccCCCCCC
Q 013114 281 FLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTAS-------PH------LDEESAERVRKNFSPLPLSFLPHLPTDS 347 (449)
Q Consensus 281 ~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~-------~~------~q~~~l~~i~~~F~~lpi~~vP~~~~e~ 347 (449)
++|++|| .+++.|++|+++.|+.+|+++.|+|+|+. ++ .|..+++++.+.|+..++..+|+++.|+
T Consensus 226 vlV~~p~-~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~e~ 304 (324)
T 3zq6_A 226 KMVVIPE-EMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKKEA 304 (324)
T ss_dssp EEEECSS-HHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCS
T ss_pred EEEeCCc-ccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 9999999 79999999999999999999999999942 22 2346899999999999999999999999
Q ss_pred ccchhhhhccccHHHHHHHhcccccc
Q 013114 348 SLDWNTIMLNPAGKEARDLLSLQAKR 373 (449)
Q Consensus 348 ~~~~~~~g~~~L~~la~~lf~~~~dp 373 (449)
.|++.|..+++.+|+ +.||
T Consensus 305 ------~g~~~L~~~~~~l~~-~~~p 323 (324)
T 3zq6_A 305 ------KGIETLEKIAEQLYG-EPEP 323 (324)
T ss_dssp ------CSHHHHHHHHHHHHC-SCC-
T ss_pred ------CCHHHHHHHHHHHhC-CCCC
Confidence 889999999999997 5566
No 4
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=8.6e-46 Score=375.57 Aligned_cols=298 Identities=21% Similarity=0.321 Sum_probs=234.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhhh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMFL 122 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~ 122 (449)
++++|++++|||||||||+|+|+|.++|++|+||||| |+|| ++++.||.+.+..|+.+. +||++.++|+...++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv--D~D~~~~l~~~l~~~~~~~~~~v~g~~~l~~~~id~~~~~~ 101 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV--STDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAME 101 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEE--ECCTTCHHHHHHCSCCCSSCEECTTCSSEEEEECCHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCHHHHhCCCCCcCccccccccceeeeccCHHHHHH
Confidence 4589999999999999999999999999999999999 7777 499999999999999998 999999999999999
Q ss_pred hhHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHh
Q 013114 123 EPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMI 202 (449)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL 202 (449)
++|..+......+......+. -..+++...||++|++.+.++.++++ +++||+|||||||++|+||||
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~pg~~e~~~~~~l~~~~~-----------~~~yD~VIiDtpPt~~tlrlL 169 (349)
T 3ug7_A 102 EYKEKLKAQIEENPFLGEMLE-DQLEMAALSPGTDESAAFDVFLKYMD-----------SNEFDVVIFDTAPTGHTLRFL 169 (349)
T ss_dssp HHHHHHHHHGGGCHHHHHHHH-HHHHHHHHSTTHHHHHHHHHHHHHHH-----------CCSCSEEEECSCCCTTGGGGG
T ss_pred HHHHHHHHHHHHhcccchhhH-HHHHHhccCCCHHHHHHHHHHHHHHH-----------hCCCCEEEECCCCChHHHHHH
Confidence 999888776543321111100 01124457899999988887777764 468999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHH---HHHHHHHhhcCCCceE
Q 013114 203 GVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDR---MLERGSSALAEPHKFG 279 (449)
Q Consensus 203 ~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~---~~~~~~~~L~dp~~t~ 279 (449)
++|+.+.||++++++++++. +++.+++ ..+.+..+... +.+.|++++.+.+ .+++++++|+||+.|.
T Consensus 170 ~~p~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~ 239 (349)
T 3ug7_A 170 GMPEVMDKYMTKLIKLRKQM--SGFMKMM-----KKLLPFGGKDE---DIDYDKMLEELEKMKERIVRARNILSDPERTA 239 (349)
T ss_dssp GHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHSCC----------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHH-----hhccccccccc---cCCchHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 99999999999999988775 3332221 11111111111 1345667666654 5789999999999999
Q ss_pred EEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecC-------cc------ccHHHHHHHHHhcCCCCeeeccCCCCC
Q 013114 280 CFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTAS-------PH------LDEESAERVRKNFSPLPLSFLPHLPTD 346 (449)
Q Consensus 280 v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~-------~~------~q~~~l~~i~~~F~~lpi~~vP~~~~e 346 (449)
+++|++|+ .+++.|++|+++.|+.+|+++.++|+|+. ++ .|+.+++++.+.|+..++.++|+.+.|
T Consensus 240 ~vlV~~p~-~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e 318 (349)
T 3ug7_A 240 FRLVVIPE-EMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTE 318 (349)
T ss_dssp EEEEECSS-HHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSC
T ss_pred EEEEECCC-ccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 99999999 79999999999999999999999999942 22 245689999999999999999999999
Q ss_pred CccchhhhhccccHHHHHHHhccccccccc
Q 013114 347 SSLDWNTIMLNPAGKEARDLLSLQAKRSSS 376 (449)
Q Consensus 347 ~~~~~~~~g~~~L~~la~~lf~~~~dp~~~ 376 (449)
+ .|++.|+.+++.+|+ ++||.+.
T Consensus 319 ~------~g~~~L~~~~~~l~~-~~~~~~~ 341 (349)
T 3ug7_A 319 A------KGIETLKQIAKILYG-EEEKEEQ 341 (349)
T ss_dssp S------CSHHHHHHHHHHHC---------
T ss_pred C------CCHHHHHHHHHHHcC-CCCcccc
Confidence 9 889999999999997 5677643
No 5
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=3.4e-46 Score=378.15 Aligned_cols=297 Identities=18% Similarity=0.232 Sum_probs=175.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYA--MAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKM 120 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA--~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~ 120 (449)
+.++|++++|||||||||+|+++|.++| +.|+||||| |+|| ++++.||.+.+..|+.+. +||++.++|+...
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli--d~D~~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~ 93 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI--STDPAHNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAA 93 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE--ECCSSCHHHHHHTSCCCSSCEEETTEEEEEEEECCC---
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE--ECCCCCChHHHhccccCCCceeccCCCCceEEeeCHHHH
Confidence 3479999999999999999999999999 899999999 8887 499999999999999985 8999999999999
Q ss_pred hhhhHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhccc-ccccCcCCCccEEEEcCCCchHHH
Q 013114 121 FLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNF-AQRNHQKEKFDVIVYDGISPEETL 199 (449)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~-~~~~~~~~~yD~IVvD~pPtg~tl 199 (449)
+++++..+..+.... .+.+..+..+.....||++|++++.++.++++..+.. ......+++||+||||||||||||
T Consensus 94 ~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~tL 170 (348)
T 3io3_A 94 MSDLQQQASQYNNDP---NDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTL 170 (348)
T ss_dssp -----------------------------------------------------------------CCEEEEECSSHHHHH
T ss_pred HHHHHHHHHhhcccc---cccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHHH
Confidence 998887765532211 1123445556667789999988776665554321000 000001237999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHH---HHHHHHHHHHHHhhcCCC
Q 013114 200 RMIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIW---DAMDRMLERGSSALAEPH 276 (449)
Q Consensus 200 rlL~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~l~~~~~~~~~~L~dp~ 276 (449)
|||++|+.+.||+++++++.++. +|+. ++. .+++ .++++ +++.+.+++++++|+||+
T Consensus 171 rlL~lP~~~~~~l~~~~~~~~~~------~p~~-~~~-~~~~------------~~~~~~~l~~~~~~~~~~~~~L~dp~ 230 (348)
T 3io3_A 171 RFLQLPSTLEKLLSKFKDLSGKL------GPML-SMM-GGGQ------------QQDIFEKLNEVQKNVSEVNEQFTNPE 230 (348)
T ss_dssp HHTC-----------------------------------------------------------------CHHHHHHTCTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHhh------hHHH-Hhc-ccCc------------hHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999887653 4544 221 1111 23344 445566889999999999
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc----------c------ccHHHHHHHHHhcCCCCeeec
Q 013114 277 KFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP----------H------LDEESAERVRKNFSPLPLSFL 340 (449)
Q Consensus 277 ~t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~----------~------~q~~~l~~i~~~F~~lpi~~v 340 (449)
.|++++||+|| .+++.|++|+++.|+.+|+++.++|+|+.. + .|+.|+++|.+.|.++|++++
T Consensus 231 ~t~~vlVt~pe-~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~ 309 (348)
T 3io3_A 231 LTTFICVCISE-FLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKM 309 (348)
T ss_dssp TEEEEEEEESS-HHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ceEEEEEecCC-ccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEe
Confidence 99999999999 799999999999999999999999999421 1 245599999999999999999
Q ss_pred cCCCCCCccchhhhhccccHHHHHHHhccccccccc
Q 013114 341 PHLPTDSSLDWNTIMLNPAGKEARDLLSLQAKRSSS 376 (449)
Q Consensus 341 P~~~~e~~~~~~~~g~~~L~~la~~lf~~~~dp~~~ 376 (449)
|+++.|| +|++.|+.+++.+|+ ..||...
T Consensus 310 pl~~~e~------~G~~~L~~~~~~l~~-~~~p~~~ 338 (348)
T 3io3_A 310 PLLGCEI------RGVENLKKFSKFLLK-PYDPKAD 338 (348)
T ss_dssp ECCSSCC------CSHHHHHHHHHHHHS-CCCTTTC
T ss_pred cCCCCCC------CCHHHHHHHHHHHcC-CCCcccc
Confidence 9999999 899999999999996 4567643
No 6
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-42 Score=343.53 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=220.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMFLE 123 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~~ 123 (449)
.++|++++|||||||||+|+++|.++|++|+||+|| |+|| ++++.||.+.+..|+.+. +++.+.++|+...+++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv--D~D~~~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 95 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI--STDPAHNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQE 95 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE--ECCTTCHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE--ECCCCcCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHHH
Confidence 478999999999999999999999999999999999 8887 589999998777776665 7899999999888877
Q ss_pred hHHHHHHH-HHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHh
Q 013114 124 PLNWLKQA-DARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMI 202 (449)
Q Consensus 124 ~~~~~~~~-~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL 202 (449)
+|..+... +..++ .....+.....||.+|++.+.++.+.++ +++||+|||||||+|++||||
T Consensus 96 ~~~~~~~~~l~~~l------~~~l~~l~~~~pg~~e~~~~~~~~~~l~-----------~~~yD~ViiDtpPtg~~l~lL 158 (329)
T 2woo_A 96 MTEQADQQNPNNPL------SGMMQDLAFTIPGIDEALAFAEILKQIK-----------SMEFDCVIFDTAPTGHTLRFL 158 (329)
T ss_dssp HHHTC--------C------CHHHHHHHTTSTTHHHHHHHHHHHHHHH-----------HTCCSEEEEECCSSSCTTTGG
T ss_pred HHHHHhhhhHHHHh------hHHHHHHhcCCCCHHHHHHHHHHHHHHH-----------hCCCCEEEECCCCchHHHHHH
Confidence 77554331 11111 1111111345799999877666555543 267999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 013114 203 GVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFL 282 (449)
Q Consensus 203 ~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~L 282 (449)
++|+.+.||+++++++.++. .++...+. .+++. .++..+....++++.+.++++++.|+||+.|++++
T Consensus 159 ~~p~~~~~~l~~l~~~~~~~------~~~~~~l~-~~~g~-----~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vl 226 (329)
T 2woo_A 159 NFPTVLEKALGKLGGLSSRF------GPMINQMG-SIMGV-----NANEQDLFGKMESMRANISEVNKQFKNPDLTTFVC 226 (329)
T ss_dssp GHHHHHHHHHHHHHTSCSSC------HHHHHHHH-HHHC----------CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHH-hhcCC-----CCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999998776643 23322211 11110 00001122355677778999999999999999999
Q ss_pred EecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc--------------ccHHHHHHHHHhcCCCCeeeccCCCCCCc
Q 013114 283 VMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH--------------LDEESAERVRKNFSPLPLSFLPHLPTDSS 348 (449)
Q Consensus 283 Vt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~--------------~q~~~l~~i~~~F~~lpi~~vP~~~~e~~ 348 (449)
|++|| .+++.|++|++++|+.+|+++.++|+|+..+ .|..+++++++.|.++|+.++|+++.|+
T Consensus 227 V~~pe-~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~~~e~- 304 (329)
T 2woo_A 227 VCISE-FLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQVPAEV- 304 (329)
T ss_dssp EEESS-HHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCC-
T ss_pred EeCCC-cchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCC-
Confidence 99999 7999999999999999999999999996432 3456899999999999999999999998
Q ss_pred cchhhhhccccHHHHHHHhc
Q 013114 349 LDWNTIMLNPAGKEARDLLS 368 (449)
Q Consensus 349 ~~~~~~g~~~L~~la~~lf~ 368 (449)
.|++.|..+++.+|.
T Consensus 305 -----~g~~~L~~l~~~l~~ 319 (329)
T 2woo_A 305 -----RGTEALKSFSEMLVK 319 (329)
T ss_dssp -----CSTTHHHHHHHHHHS
T ss_pred -----CCHHHHHHHHHHHhc
Confidence 888999999999985
No 7
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=9.1e-41 Score=339.34 Aligned_cols=287 Identities=20% Similarity=0.253 Sum_probs=213.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYA--MAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMF 121 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA--~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~ 121 (449)
.++|++++|||||||||+|+|+|.++| ++|+||||| |+|| ++++.||.+.+.+|+.+. +||++.++|+...+
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLv--D~D~~~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l 94 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI--STDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAAL 94 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEE--ECCSSCCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE--ECCCCCCHHHHhCCCCCCCceeecCCCceEEEecCHHHHH
Confidence 478999999999999999999999999 899999999 7776 599999999888888887 89999999999888
Q ss_pred hhhHHHHHHHHH---------hhhhcccccCCcccccc-CCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEc
Q 013114 122 LEPLNWLKQADA---------RLNMTQGVLGGVVGEEL-GVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYD 191 (449)
Q Consensus 122 ~~~~~~~~~~~~---------~~~~~~~~~~~i~~~el-~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD 191 (449)
+++|..+..... .+. ..+ +.... +++ ...||++|+..+.++.+.++.-.. ....+||+||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~l~-~l~-~~~~~-~el~~~~pg~~e~~~l~~l~~~l~~~~~-----~~~~~yD~IIiD 166 (354)
T 2woj_A 95 KDMNDMAVSRANNNGSDGQGDDLG-SLL-QGGAL-ADLTGSIPGIDEALSFMEVMKHIKRQEQ-----GEGETFDTVIFD 166 (354)
T ss_dssp HHHHTC---------------------C-CSSHH-HHHHTTSTTHHHHHHHHHHHHHHHHHHH-----TSCCSCSEEEEE
T ss_pred HHHHHHHHhhcccccccchhhhhh-hcc-chhHH-HHHhcCCCChHHHHHHHHHHHHHhcccc-----cccCCCCEEEEC
Confidence 888766554211 011 001 11112 333 568999998766555544431000 001269999999
Q ss_pred CCCchHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 013114 192 GISPEETLRMIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSA 271 (449)
Q Consensus 192 ~pPtg~tlrlL~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~ 271 (449)
|||||+|||||++|+.+.||+++++++.++. . +++..+.. + + . ......++++.+.++++++.
T Consensus 167 tpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~--~----~~~~~~~~-~-~----~-----~~~~~~l~~~~~~~~~~~~~ 229 (354)
T 2woj_A 167 TAPTGHTLRFLQLPNTLSKLLEKFGEITNKL--G----PMLNSFMG-A-G----N-----VDISGKLNELKANVETIRQQ 229 (354)
T ss_dssp CCCHHHHHHHHTHHHHHHHHHHCC--------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHhhHHHHHHHHHHHHHHHHHH--H----HHHHHhhc-C-C----h-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877653 2 22221110 0 0 0 01234556667778999999
Q ss_pred hcCCCceEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc-----------c------ccHHHHHHHHHhcCC
Q 013114 272 LAEPHKFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP-----------H------LDEESAERVRKNFSP 334 (449)
Q Consensus 272 L~dp~~t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~-----------~------~q~~~l~~i~~~F~~ 334 (449)
|+||..+.+++|++|| .+++.|++|+++.|+.+|+++.++|+|+.. + .|+.|++++.+.|.+
T Consensus 230 L~d~~~~~~vlV~~pe-~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~~~~~ 308 (354)
T 2woj_A 230 FTDPDLTTFVCVCISE-FLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDELYED 308 (354)
T ss_dssp HTCTTTEEEEEEEESS-HHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcCCCCcEEEEEeCCC-cchHHHHHHHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 799999999999999999999999999532 1 134588899999999
Q ss_pred CCeeeccCCCCCCccchhhhhccccHHHHHHHhc
Q 013114 335 LPLSFLPHLPTDSSLDWNTIMLNPAGKEARDLLS 368 (449)
Q Consensus 335 lpi~~vP~~~~e~~~~~~~~g~~~L~~la~~lf~ 368 (449)
.++..+|++..++ .|.++|..+++.+++
T Consensus 309 ~~v~~~P~~~~~~------~g~~~l~~la~~l~~ 336 (354)
T 2woj_A 309 FHVVKMPLCAGEI------RGLNNLTKFSQFLNK 336 (354)
T ss_dssp SEEEEEECCSSCC------CHHHHHHHHHHHHHT
T ss_pred CCEEEeecCCCCC------ccHHHHHHHHHHHhc
Confidence 9999999999998 778899999999985
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=1.7e-34 Score=311.25 Aligned_cols=320 Identities=17% Similarity=0.191 Sum_probs=225.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhccCCCCeeec--CCcceeecCchhhhh
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSPVVCN--SNLSAVRIETTKMFL 122 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~~~~~p~~i~--~~L~~~eid~~~~~~ 122 (449)
.+++|++++|||||||||+|+++|.++|++|+|||+| |+|| ++++.||.+.+..++.+. +||++.++|+...+.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv--d~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~ 83 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV--STDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQ 83 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHH
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE--ECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHH
Confidence 3478999999999999999999999999999999999 7776 599999999888888876 899999999988888
Q ss_pred hhHHHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHH--HhcccccccCcCCCccEEEEcCCCchHHHH
Q 013114 123 EPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVG--FFGNFAQRNHQKEKFDVIVYDGISPEETLR 200 (449)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~--~l~~~~~~~~~~~~yD~IVvD~pPtg~tlr 200 (449)
++|+.+......++. ...+..+ .+.+ ..++..|++....+.++++ .+ +++||+|||||||+++++|
T Consensus 84 ~~~~~~~~~~~~~lp-~~~~~~~-~~~l-~~~~~~e~~~~~~~~~ll~~~~l---------~~~yD~VIiDt~P~~~~lr 151 (589)
T 1ihu_A 84 QYRARIVDPIKGVLP-DDVVSSI-NEQL-SGACTTEIAAFDEFTGLLTDASL---------LTRFDHIIFDTAPTGHTIR 151 (589)
T ss_dssp HHHHHHHGGGTTTSC-HHHHHHH-HHHT-SSHHHHHHHHHHHHHHHHHCTTH---------HHHCSEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcc-hhhHHHH-HHHh-cccchHHHHHHHHHHHHHhchhh---------cccCCEEEECCCCchhHHH
Confidence 877665442111110 0000000 0112 2345667777777776665 22 3469999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEE
Q 013114 201 MIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGC 280 (449)
Q Consensus 201 lL~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v 280 (449)
+|++|+.+.||+++.... ...++|+. . + ....+.++++.+.++||+.|.+
T Consensus 152 ll~lP~~~~~~l~~~~~~------~~~l~~~~-~--------------l---------~~~~~~~~~~~~~l~d~~~t~v 201 (589)
T 1ihu_A 152 LLQLPGAWSSFIDSNPEG------ASCLGPMA-G--------------L---------EKQREQYAYAVEALSDPKRTRL 201 (589)
T ss_dssp HHHCGGGGTCCC------------CCCCGGGG-G--------------C---------CSCHHHHHHHHHHHHCTTTEEE
T ss_pred HHHhHHHHHHHHHHhhcc------ccccchhh-h--------------h---------hHHHHHHHHHHHHhcCCCCcEE
Confidence 999999999999875321 12223321 0 0 0112345678888999999999
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecC--c-------c------ccHHHHHHHHHhcCCCCeeeccCCCC
Q 013114 281 FLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTAS--P-------H------LDEESAERVRKNFSPLPLSFLPHLPT 345 (449)
Q Consensus 281 ~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~--~-------~------~q~~~l~~i~~~F~~lpi~~vP~~~~ 345 (449)
++|++|+ .+++.++++++++|+.+|+++.++|+|+- . + .|.++++++++.|.+.++..+|+++.
T Consensus 202 vlV~~~~-~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~~~ 280 (589)
T 1ihu_A 202 VLVARLQ-KSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPV 280 (589)
T ss_dssp EEEEESC-HHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTSCEEEEECCSS
T ss_pred EEEeCCC-ccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhccCCCEEEecCCCC
Confidence 9999999 79999999999999999999999999942 1 1 14568888999999999999999999
Q ss_pred CCccchhhhhccccHHHHHHH---hcccccccccCC--cce-----EEe--cCceEEEEEcCCCCCCce------EEEee
Q 013114 346 DSSLDWNTIMLNPAGKEARDL---LSLQAKRSSSLM--SSV-----KFD--AAKKSVTLLMPGFDKSEI------KLYQY 407 (449)
Q Consensus 346 e~~~~~~~~g~~~L~~la~~l---f~~~~dp~~~~~--~~~-----~i~--~~~y~l~l~LP~~~~~~l------~l~~~ 407 (449)
|+ .|.+.|+.++..+ |....+|..... +++ .+. ...+.+....+|+.|..+ .+.+.
T Consensus 281 e~------~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~ 354 (589)
T 1ihu_A 281 NM------VGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM 354 (589)
T ss_dssp CC------CSHHHHHHTTCSCC-----------CCCCCCCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CC------CCHHHHHHHHhhhhccccccccccccccccchhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHC
Confidence 98 7788888877655 421122222111 221 001 125788889999999887 66652
Q ss_pred cCCCeEEEEEC
Q 013114 408 RGGSELLVEAG 418 (449)
Q Consensus 408 ~~gdeL~I~~g 418 (449)
....|+|...
T Consensus 355 -g~~vllvD~D 364 (589)
T 1ihu_A 355 -GFDVHLTTSD 364 (589)
T ss_dssp -TCCEEEEESC
T ss_pred -CCcEEEEeCC
Confidence 2345566554
No 9
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.96 E-value=1e-28 Score=266.22 Aligned_cols=241 Identities=21% Similarity=0.204 Sum_probs=165.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
..++++++|||||||||+|+++|..+|++|+||+++ |+||. +++.|+.. .+|+++.++|.....++++
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv--D~Dp~~~l~~~l~~~--------~~~l~~~~~~~~~~~~~~~ 395 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT--TSDPAAHLSMTLNGS--------LNNLQVSRIDPHEETERYR 395 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--ESCCC-------------------CCEEEEECCHHHHHHHHH
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE--eCCCcccHhHHhccc--------CCCceeeecchHHHHHHHH
Confidence 467899999999999999999999999999999999 88884 77777752 3577888888877777777
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
..+.......+...+ . ... .+....|++++...+.. +.+.++ +++||+|||||||+++++|||++|
T Consensus 396 ~~v~~~~~~~l~~~~-~-~~~-~~~~~~p~~~e~~~~~~---l~~~~~--------~~~~D~vviD~~p~~~tl~ll~~p 461 (589)
T 1ihu_A 396 QHVLETKGKELDEAG-K-RLL-EEDLRSPCTEEIAVFQA---FSRVIR--------EAGKRFVVMDTAPTGHTLLLLDAT 461 (589)
T ss_dssp HHHHHHHHTTCCHHH-H-HHH-HHHTTSHHHHHHHHHHH---HTTTGG--------GGGTSEEEESCCCCHHHHHHHHHC
T ss_pred HHHHHhhhccCChhh-H-HHH-HHHhcCCChHHHHHHHH---HHHHHh--------ccCCCEEEEcCCCCccHHHHHHhH
Confidence 666553221110000 0 011 12234677777554443 333222 356999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEec
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMN 285 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~ 285 (449)
+.+..++.+. .++.. .+.++...|.||..+.+++|++
T Consensus 462 ~~~~~~~~~~------------~~~~~-------------------------------~~~~~~~~l~d~~~~~vvlV~~ 498 (589)
T 1ihu_A 462 GAYHREIAKK------------MGEKG-------------------------------HFTTPMMLLQDPERTKVLLVTL 498 (589)
T ss_dssp -------------------------------------------------------------CCHHHHHCTTTEEEEEEEC
T ss_pred HHHHHHHHHh------------cccch-------------------------------HHHHHHHHhcCCCCCEEEEEeC
Confidence 9865433221 11000 0112224577999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCcccEEEEecCc--------c------ccHHHHHHHHHhcCCCCeeeccCCCCCCccch
Q 013114 286 PNNRTSVNSALRYWGCTIQAGAQVAGAICTASP--------H------LDEESAERVRKNFSPLPLSFLPHLPTDSSLDW 351 (449)
Q Consensus 286 PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~--------~------~q~~~l~~i~~~F~~lpi~~vP~~~~e~~~~~ 351 (449)
|+ .+++.|+.|++++|+.+|+++.++|+|+.. + .|..+++++++.| +.|+..+|++++||
T Consensus 499 p~-~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~iP~~~~e~---- 572 (589)
T 1ihu_A 499 PE-TTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH-ASRVALVPVLASEP---- 572 (589)
T ss_dssp SS-HHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT-CSSEEEEECCSSCC----
T ss_pred CC-ccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc-CCcEEEccCCCCCC----
Confidence 99 799999999999999999999999999421 1 2345899999999 57999999999999
Q ss_pred hhhhccccHHHH
Q 013114 352 NTIMLNPAGKEA 363 (449)
Q Consensus 352 ~~~g~~~L~~la 363 (449)
+|.+.|..++
T Consensus 573 --~g~~~l~~~~ 582 (589)
T 1ihu_A 573 --TGIDKLKQLA 582 (589)
T ss_dssp --CSHHHHHHHH
T ss_pred --CCHHHHHHHh
Confidence 8888887754
No 10
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.73 E-value=9.3e-18 Score=165.28 Aligned_cols=166 Identities=13% Similarity=0.074 Sum_probs=111.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
..|.+.++|||+||||+|+++|..+|+.|+||||| |+|+ +++..||.+......++..+ +.+..
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI--D~D~~~~~l~~~~~~~~~~gl~~~l~~----~~~~~------- 159 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI--DCDMRKGYTHELLGTNNVNGLSEILIG----QGDIT------- 159 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE--ECCTTTCCHHHHHTCCCTTCHHHHHHT----SSCTT-------
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE--eccCCCCCHHHHhCCCCCCCHHHHccC----CCCHH-------
Confidence 56667778999999999999999999999999999 8886 48888887532211111000 00000
Q ss_pred HHHHHHHHhhhhcc--cccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhh
Q 013114 126 NWLKQADARLNMTQ--GVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIG 203 (449)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~ 203 (449)
...... ..+.-+... ...|...|++....+.++++.++ ++||+|||||||....
T Consensus 160 --------~~i~~~~~~~l~vl~~g--~~~~~~~ell~~~~l~~ll~~l~---------~~yD~VIIDtpp~~~~----- 215 (286)
T 3la6_A 160 --------TAAKPTSIAKFDLIPRG--QVPPNPSELLMSERFAELVNWAS---------KNYDLVLIDTPPILAV----- 215 (286)
T ss_dssp --------TTCEECSSTTEEEECCC--SCCSCHHHHHTSHHHHHHHHHHH---------HHCSEEEEECCCTTTC-----
T ss_pred --------HheeccCCCCEEEEeCC--CCCCCHHHHhchHHHHHHHHHHH---------hCCCEEEEcCCCCcch-----
Confidence 000000 011111111 12456667777778888888775 3699999999998641
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Q 013114 204 VSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLV 283 (449)
Q Consensus 204 lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LV 283 (449)
++.. ++ ....| .+++|
T Consensus 216 -~da~------------------~l-----------------------------------------~~~aD----~vllV 231 (286)
T 3la6_A 216 -TDAA------------------IV-----------------------------------------GRHVG----TTLMV 231 (286)
T ss_dssp -THHH------------------HH-----------------------------------------TTTCS----EEEEE
T ss_pred -HHHH------------------HH-----------------------------------------HHHCC----eEEEE
Confidence 0000 00 00223 68999
Q ss_pred ecCCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 284 MNPNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 284 t~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
+.|+ ..+..++.++...|+..|.++-|+|+|+
T Consensus 232 v~~~-~~~~~~~~~~~~~l~~~g~~~~GvVlN~ 263 (286)
T 3la6_A 232 ARYA-VNTLKEVETSLSRFEQNGIPVKGVILNS 263 (286)
T ss_dssp EETT-TSBHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred EeCC-CCcHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 9999 6999999999999999999999999994
No 11
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.72 E-value=3e-17 Score=163.74 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..|||-++|||||||||+|+|||.+||++|+|||+| |+||.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI--D~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI--GCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--EESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE--ecCCC
Confidence 367888889999999999999999999999999999 99995
No 12
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.71 E-value=7.5e-17 Score=152.94 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccHHHHHHHHHhcCCCCe-eeccC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNFSPLPL-SFLPH 342 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~~~l~~i~~~F~~lpi-~~vP~ 342 (449)
.+++|++|+ ..++..+.++...+..+|+..-++|+|+.. .+...+++++.|.+.++ ..||+
T Consensus 156 ~viiv~~~~-~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~--~~~~~~~~~~~~~~~~~~~~Ip~ 217 (254)
T 3kjh_A 156 MMIAVIEPN-LNSIKTGLNIEKLAGDLGIKKVRYVINKVR--NIKEEKLIKKHLPEDKILGIIPY 217 (254)
T ss_dssp EEEEEECSS-HHHHHHHHHHHHHHHHHTCSCEEEEEEEEC--CHHHHHHHHHHSCGGGEEEEEEC
T ss_pred EEEEecCCC-HHHHHHHHHHHHHHHHcCCccEEEEEeCCC--ChhHHHHHHHHhcCCcccccccC
Confidence 789999999 799999999999999999988899999643 23356788888874443 44554
No 13
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.71 E-value=2e-16 Score=152.97 Aligned_cols=48 Identities=27% Similarity=0.458 Sum_probs=42.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc---hhhhhhhc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT---AEYILNCK 98 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps---l~d~~g~~ 98 (449)
+.|.++++||||||||+|+++|.++|++|+|||+| |+||. ++..||..
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli--D~D~~~~~l~~~l~~~ 69 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL--DADFLGPSIPILFGLR 69 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE--ECCSSCCHHHHHTTCC
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHhcCC
Confidence 46777789999999999999999999999999999 99984 66778765
No 14
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.70 E-value=1.3e-16 Score=150.78 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=113.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
+.|.++++||||||||+|+++|.++|++|+||++| |+|| +++..||.+... ..+.+-+. .+.+..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli--D~D~~~~~l~~~~~~~~~~--~~l~~~l~-~~~~~~------- 70 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV--DGDLTMANLSLVLGVDDPD--VTLHDVLA-GEANVE------- 70 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCTTSCCHHHHTTCCCCS--SCHHHHHT-TSSCGG-------
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE--eCCCCCCChhHhcCCCCCC--CCHHHHhc-CCCCHH-------
Confidence 35666678999999999999999999999999999 8887 378888865320 00000000 000000
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCCh--HHHHH---HHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGM--DSIFS---AFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLR 200 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~--~e~~~---l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlr 200 (449)
....... ...+..+|+. .+... ...+.++++.+ +++||+|||||||..+..
T Consensus 71 --------~~i~~~~------~~~l~~lp~~~~~~~~~~~~~~~l~~~l~~l---------~~~yD~viiD~~~~~~~~- 126 (237)
T 1g3q_A 71 --------DAIYMTQ------FDNVYVLPGAVDWEHVLKADPRKLPEVIKSL---------KDKFDFILIDCPAGLQLD- 126 (237)
T ss_dssp --------GGCEECS------STTEEEECCCCSHHHHHHCCGGGHHHHHHTT---------GGGCSEEEEECCSSSSHH-
T ss_pred --------HHhhcCC------CCCEEEEeCCCccchhhhcCHHHHHHHHHHH---------HhcCCEEEEECCCCcCHH-
Confidence 0000000 0111112221 11111 22344555443 256999999999976410
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEE
Q 013114 201 MIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGC 280 (449)
Q Consensus 201 lL~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v 280 (449)
. .. + + ...| .+
T Consensus 127 ------~------------~~-----~------------~------------------------------~~ad----~v 137 (237)
T 1g3q_A 127 ------A------------MS-----A------------M------------------------------LSGE----EA 137 (237)
T ss_dssp ------H------------HH-----H------------H------------------------------TTCS----EE
T ss_pred ------H------------HH-----H------------H------------------------------HHCC----eE
Confidence 0 00 0 0 0123 78
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccc-cHHHHHHHHHhcCCCCeeeccCC
Q 013114 281 FLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHL-DEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 281 ~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~-q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
++|+.|+ ..++..+.++...++..|+++-++|+|+.... ....++++.+.++...+..||+.
T Consensus 138 i~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~ 200 (237)
T 1g3q_A 138 LLVTNPE-ISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPED 200 (237)
T ss_dssp EEEECSC-HHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCEEEEEECC
T ss_pred EEEecCC-cccHHHHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccceeeCCCC
Confidence 9999999 79999999999999999999999999953211 11235667777754444567764
No 15
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.70 E-value=5.9e-17 Score=153.82 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=112.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLE 123 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~ 123 (449)
+..|.++++||||||||+|+++|.++|++ |+|||+| |+|| +++..|+.. .+ ..++..+-.+. ..+++
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli--D~D~~~~~l~~~~~~~---~~---~~~l~~~l~~~-~~~~~ 74 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV--DISLPFGDLDMYLSGN---TH---SQDLADISNAS-DRLDK 74 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE--ECCTTTCCGGGGTCSS---CC---SCCHHHHHHTG-GGCCH
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE--ECCCCCCCHHHHhCCC---CC---CCCHHHHHhhH-hhhhH
Confidence 45677777899999999999999999999 9999999 8886 477777421 11 01111110000 00000
Q ss_pred hHHHHHHHHHhhhhcccccCCccccccCCCCChHHH--HHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHH
Q 013114 124 PLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSI--FSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRM 201 (449)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~--~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrl 201 (449)
.+.+ .+.. .. ..++ .-+...+...+. +....+.++++.++ ++||+|||||||..+..
T Consensus 75 ---~~~~---~~~~-~~-~~~l--~~l~~~~~~~~~~~~~~~~l~~~l~~l~---------~~yD~viiD~p~~~~~~-- 133 (245)
T 3ea0_A 75 ---SLLD---TMVQ-HI-SPSL--DLIPSPATFEKIVNIEPERVSDLIHIAA---------SFYDYIIVDFGASIDHV-- 133 (245)
T ss_dssp ---HHHH---HHSE-EE-ETTE--EEECCCSSHHHHHHCCHHHHHHHHHHHH---------HHCSEEEEEEESSCCTT--
T ss_pred ---HHHH---HHhE-ec-CCCe--EEEcCCCChHhhhcCCHHHHHHHHHHHH---------hhCCEEEEeCCCCCchH--
Confidence 0011 1110 00 0111 001111111111 11234555655543 36999999999976520
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 013114 202 IGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCF 281 (449)
Q Consensus 202 L~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~ 281 (449)
.. .. +. ..| .++
T Consensus 134 --------------------------~~----~~----l~------------------------------~ad----~vi 145 (245)
T 3ea0_A 134 --------------------------GV----WV----LE------------------------------HLD----ELC 145 (245)
T ss_dssp --------------------------HH----HH----GG------------------------------GCS----EEE
T ss_pred --------------------------HH----HH----HH------------------------------HCC----EEE
Confidence 00 00 00 113 789
Q ss_pred EEecCCCcchHHHHHHHHHHHHHcC--CcccEEEEecCccccHHHHHHHHHhcCCCCeeeccCC
Q 013114 282 LVMNPNNRTSVNSALRYWGCTIQAG--AQVAGAICTASPHLDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 282 LVt~PE~~~~i~Ea~r~~~~L~~~G--i~V~~vvvN~~~~~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
+|+.|+ ..++..+.++...++.+| ...-++|+|+.........+++++.|+...+..+|+.
T Consensus 146 iv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~v~~~ip~~ 208 (245)
T 3ea0_A 146 IVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRITSDEIEKVIGRPISKRIPQD 208 (245)
T ss_dssp EEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHHTSCEEEEECCC
T ss_pred EEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCCHHHHHHHhCCCeEEECCCC
Confidence 999999 799999999999999988 5567999996432211123677777754334455554
No 16
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.69 E-value=3.8e-16 Score=154.18 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=40.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNC 97 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~ 97 (449)
.+++|.++|||||||||+|+++|.++|++|+|||+| |+||. +...|+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli--D~D~~~~~~~~l~~ 89 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI--GCDPKHDSTFTLTG 89 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--EESSSCCTTHHHHT
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCHHHHhCc
Confidence 356666669999999999999999999999999999 88884 5666664
No 17
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.69 E-value=2.5e-16 Score=153.79 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=109.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
..|.+.+.|||+||||+|+++|..+|+.|+||||| |+|+ +++..||.+... +|..+-.+. ..+
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI--D~D~~~~~l~~~~~~~~~~-------gl~~~L~~~-----~~l 148 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV--DGDMRKPTQHYIFNLPNNE-------GLSSLLLNW-----STY 148 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCSSSCCHHHHTTCCCSS-------SHHHHHTTS-----SCH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE--eCCCCCccHHHHcCCCCCC-------CHHHHhCCC-----CCH
Confidence 45555567999999999999999999999999999 8885 588888875321 221110000 001
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
.+..... ....+.-+.+.. ..|...+++....+.++++.++ ++||+|||||||.... +
T Consensus 149 ---~~~i~~~--~~~~l~vl~~g~--~~~~~~ell~~~~l~~ll~~l~---------~~yD~VIIDtpp~~~~------~ 206 (271)
T 3bfv_A 149 ---QDSIIST--EIEDLDVLTSGP--IPPNPSELITSRAFANLYDTLL---------MNYNFVIIDTPPVNTV------T 206 (271)
T ss_dssp ---HHHEEEC--SSTTEEEECCCS--CCSCHHHHHTSHHHHHHHHHHH---------HHCSEEEEECCCTTTC------S
T ss_pred ---HHcEEeC--CCCCEEEEECCC--CCCCHHHHhChHHHHHHHHHHH---------hCCCEEEEeCCCCchH------H
Confidence 1110000 001111111111 2345556666677777777664 3699999999997641 0
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEec
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMN 285 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~ 285 (449)
+.. . +. ...| .+++|+.
T Consensus 207 d~~------------------~-----------------------------l~------------~~aD----~vilVv~ 223 (271)
T 3bfv_A 207 DAQ------------------L-----------------------------FS------------KFTG----NVVYVVN 223 (271)
T ss_dssp HHH------------------H-----------------------------HH------------HHHC----EEEEEEE
T ss_pred HHH------------------H-----------------------------HH------------HHCC----EEEEEEe
Confidence 000 0 00 0124 6899999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 286 PNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 286 PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
|+ ..++.++.++...++..|+++-|+|+|+
T Consensus 224 ~~-~~~~~~~~~~~~~l~~~~~~~~GvVlN~ 253 (271)
T 3bfv_A 224 SE-NNNKDEVKKGKELIEATGAKLLGVVLNR 253 (271)
T ss_dssp TT-SCCHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CC-CCcHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 99 7999999999999999999999999995
No 18
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.67 E-value=3.2e-16 Score=150.95 Aligned_cols=49 Identities=35% Similarity=0.340 Sum_probs=41.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhhc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
+..|.++++||||||||+|+++|.++|++|+|||+| |+||. ++..||.+
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli--D~D~~~~~~~~l~~~ 56 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV--DLDPQGNATSGLGVR 56 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE--ECCTTCHHHHHTTCC
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE--ECCCCcCHHHHhCCC
Confidence 345666678999999999999999999999999999 99984 66667654
No 19
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.67 E-value=8e-16 Score=148.02 Aligned_cols=188 Identities=21% Similarity=0.217 Sum_probs=115.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
+.|.++++||||||||+|+++|.++|++|+||++| |+|| +++..||.+... ..+.+-+. -..+....
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli--D~D~~~~~l~~~l~~~~~~--~~l~~~l~-~~~~~~~~----- 72 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV--DADITMANLELILGMEGLP--VTLQNVLA-GEARIDEA----- 72 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE--ECCCSSSSHHHHTTCCCCC--CCHHHHHT-TSSCGGGG-----
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE--ECCCCCCCcchhcCCCCCC--CCHHHHHc-CCCcHHHh-----
Confidence 45667789999999999999999999999999999 8887 378888865321 01100000 00000000
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCC--hHHH--HH-HHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPG--MDSI--FS-AFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLR 200 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg--~~e~--~~-l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlr 200 (449)
+.... ..+..+|| ..+. +. ...+.++++.++ ++||+|||||||..+..
T Consensus 73 ---------i~~~~--------~~l~~lp~~~~~~~~~~~~~~~l~~~l~~l~---------~~yD~viiD~~~~~~~~- 125 (263)
T 1hyq_A 73 ---------IYVGP--------GGVKVVPAGVSLEGLRKANPEKLEDVLTQIM---------ESTDILLLDAPAGLERS- 125 (263)
T ss_dssp ---------CEECG--------GGCEEEECCSCHHHHHHHCHHHHHHHHHHHH---------HTCSEEEEECCSSSSHH-
T ss_pred ---------heeCC--------CCeEEEcCCCCcChhhccChHHHHHHHHHHH---------hhCCEEEEeCCCCCChH-
Confidence 00000 00111111 1111 11 334555555443 46999999999976521
Q ss_pred HhhhHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEE
Q 013114 201 MIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGC 280 (449)
Q Consensus 201 lL~lP~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v 280 (449)
. .. ++ ...| .+
T Consensus 126 ------~------------~~-----------------------------------~~------------~~ad----~v 136 (263)
T 1hyq_A 126 ------A------------VI-----------------------------------AI------------AAAQ----EL 136 (263)
T ss_dssp ------H------------HH-----------------------------------HH------------HHSS----EE
T ss_pred ------H------------HH-----------------------------------HH------------HHCC----EE
Confidence 0 00 00 0124 78
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccc-cHHHHHHHHHhcCCCCeeeccCC
Q 013114 281 FLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHL-DEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 281 ~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~-q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
++|+.|+ ..++..+.+++..++..|.++-++|+|+.... ....++++.+.+....+..||+.
T Consensus 137 i~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~ 199 (263)
T 1hyq_A 137 LLVVNPE-ISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVIGLIPED 199 (263)
T ss_dssp EEEECSS-HHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCEEEEEECC
T ss_pred EEEeCCC-hhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCeEEECCCC
Confidence 9999999 79999999999999999999999999963321 12456777777754344567764
No 20
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.66 E-value=9.3e-16 Score=141.51 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=39.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
|+.|.++++||||||||+|+++|..+|++|+||+++ |+||. +...++
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli--D~D~~~~~~~~~~ 49 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV--DTDPQMSLTNWSK 49 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCTTCHHHHHHT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE--ECCCCCCHHHHHh
Confidence 345666678999999999999999999999999999 99884 555554
No 21
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.65 E-value=6e-16 Score=153.17 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=109.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhccCCCCeeecCCcceeecCchhhhhhhH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPL 125 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~ 125 (449)
..|.+.+.|||+||||+|+++|..+|+.|+||||| |+|+ +++..||.+......++ |.. ..+ +
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI--D~D~r~~~l~~~~~~~~~~gl~~~---L~~-~~~--------l 170 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI--DADLRRGYSHNLFTVSNEHGLSEY---LAG-KDE--------L 170 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE--ECCTTTCCHHHHTTCCCSSSHHHH---HTT-SSC--------H
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE--ECCCCCccHHHHcCCCCCCCHHHH---CcC-CCC--------H
Confidence 45555566999999999999999999999999999 8886 48888886532211111 100 001 1
Q ss_pred HHHHHHHHhhhhcccccCCccccccCCCCChHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhH
Q 013114 126 NWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVS 205 (449)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~el~~~Pg~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP 205 (449)
.+..... ....+.-+.+.. ..|...+++....+.++++.++ ++||+|||||||.... +
T Consensus 171 ---~~~i~~~--~~~~l~vl~~g~--~~~~~~ell~~~~l~~ll~~l~---------~~yD~VIIDtpp~~~~------~ 228 (299)
T 3cio_A 171 ---NKVIQHF--GKGGFDVITRGQ--VPPNPSELLMRDRMRQLLEWAN---------DHYDLVIVDTPPMLAV------S 228 (299)
T ss_dssp ---HHHCEEE--TTTTEEEECCCS--CCSCHHHHHTSHHHHHHHHHHH---------HHCSEEEEECCCTTTC------T
T ss_pred ---HHhhhcc--CCCCEEEEECCC--CCCCHHHHhCHHHHHHHHHHHH---------hCCCEEEEcCCCCchh------H
Confidence 1111000 001111111111 2345556666677777777664 4699999999997641 1
Q ss_pred HHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEec
Q 013114 206 SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMN 285 (449)
Q Consensus 206 ~~l~~~l~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~L~dp~~t~v~LVt~ 285 (449)
+.. ++ ....| .+++|+.
T Consensus 229 d~~------------------~l-----------------------------------------~~~ad----~vilV~~ 245 (299)
T 3cio_A 229 DAA------------------VV-----------------------------------------GRSVG----TSLLVAR 245 (299)
T ss_dssp HHH------------------HH-----------------------------------------GGGCS----EEEEEEE
T ss_pred HHH------------------HH-----------------------------------------HHHCC----EEEEEEc
Confidence 000 00 00224 7899999
Q ss_pred CCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 286 PNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 286 PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
++ ..+..++.++...++..|+++-|+|+|+
T Consensus 246 ~~-~~~~~~~~~~~~~l~~~~~~~~GvVlN~ 275 (299)
T 3cio_A 246 FG-LNTAKEVSLSMQRLEQAGVNIKGAILNG 275 (299)
T ss_dssp TT-TSCTTHHHHHHHHHHHTTCCCCCEEEEE
T ss_pred CC-CChHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99 6999999999999999999999999994
No 22
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.64 E-value=2.5e-15 Score=145.03 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=47.2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHc----CCcccEEEEecCc-cccHHHHHHHHHhcCCCCeeeccCC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQA----GAQVAGAICTASP-HLDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~----Gi~V~~vvvN~~~-~~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
.+++|+.|+ ..++..+.++...++.+ ++++-++|+|+.. ..+...++++.+.|+...+..||+.
T Consensus 143 ~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v~~~Ip~~ 211 (269)
T 1cp2_A 143 EIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQLIHFVPRS 211 (269)
T ss_dssp EEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCEEEEECCC
T ss_pred EEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCcccccCCCC
Confidence 789999999 79999998888888654 6777799999643 2345567888888754334566764
No 23
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.64 E-value=1.5e-15 Score=148.58 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=46.8
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHc----CCcccEEEEecCcc-ccHHHHHHHHHhcCCCCeeeccCC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQA----GAQVAGAICTASPH-LDEESAERVRKNFSPLPLSFLPHL 343 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~----Gi~V~~vvvN~~~~-~q~~~l~~i~~~F~~lpi~~vP~~ 343 (449)
.+++|++|+ ..++..+.++...++.+ ++++-++|+|+... .+...++.+.+.|....+..||+.
T Consensus 146 ~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~l~~Ip~~ 214 (289)
T 2afh_E 146 EIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQMIHFVPRD 214 (289)
T ss_dssp EEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCEEEEECCC
T ss_pred EEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCccccccCCCc
Confidence 789999998 79999988888877654 78888999996432 234567788777754334566754
No 24
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.63 E-value=1.2e-15 Score=147.34 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=38.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILN 96 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g 96 (449)
+..|.++++||||||||+|+++|.++| +|+|||+| |+||. +...|+
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli--D~D~~~~~~~~~~ 74 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI--DMDTQASITSYFY 74 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE--EECTTCHHHHHTH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE--ECCCCCCHHHHhh
Confidence 356666788999999999999999999 99999999 99984 444444
No 25
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.62 E-value=7.4e-16 Score=156.37 Aligned_cols=46 Identities=35% Similarity=0.469 Sum_probs=39.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhh
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYIL 95 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~ 95 (449)
|+.|.++++||||||||+|+++|..+|++|+||||| |+||. +...|
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI--D~D~q~~~~~~l 48 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV--DCDPQCNATQLM 48 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE--ECCTTCTTHHHH
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE--EcCCCCChhhhh
Confidence 456777789999999999999999999999999999 99984 44444
No 26
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.61 E-value=6.2e-15 Score=144.59 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=42.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHc------CCcccEEEEecCcc---ccHHHHHHHHHhcCC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQA------GAQVAGAICTASPH---LDEESAERVRKNFSP 334 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~------Gi~V~~vvvN~~~~---~q~~~l~~i~~~F~~ 334 (449)
.+++|+.|+ ..++..+.+++..++.. ++++-++|+|+... .....++++.+.|..
T Consensus 179 ~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 179 YVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp EEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred eEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 789999998 79999999998888763 78888999996432 223467788888864
No 27
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.61 E-value=1.8e-15 Score=154.98 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCcc--hhhhhhhc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
.++.|.+++|||||||||+|+++|.++|+ +|+||||| |+||. ++..||.+
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli--D~D~q~~l~~~l~~~ 164 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI--DLDPQSSATMFLSHK 164 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE--EECTTCHHHHHHSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE--eCCCCCChhHHhCCc
Confidence 34667777899999999999999999994 79999999 88884 77777765
No 28
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.61 E-value=2.7e-15 Score=143.55 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=41.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc---chhhhhhhc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCK 98 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp---sl~d~~g~~ 98 (449)
.|.++++||||||||+|+++|.++|++|+|||+| |+|| +++..||.+
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli--D~D~~~~~~~~~lg~~ 53 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI--DFAIGLRNLDLIMGCE 53 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCCSSCCHHHHTTCG
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE--ECCCCCCChhHHhCCC
Confidence 4555578999999999999999999999999999 8887 378888865
No 29
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.58 E-value=2.9e-15 Score=153.83 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH------HcCCceEEEecCCCcc--hhhhhhhc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYA------MAGLSTCLVLHSQDPT--AEYILNCK 98 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA------~~G~rvLLv~~d~Dps--l~d~~g~~ 98 (449)
.+..|.+++|||||||||+|+++|.++| ++|+||||| |+||. ++..||.+
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli--D~D~~~~l~~~l~~~ 167 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI--DLDPQASSTMFLDHT 167 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE--EESSSSGGGSCC---
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE--eCCCCCChhhhhCCC
Confidence 3456777789999999999999999999 689999999 88883 66666654
No 30
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.54 E-value=5.4e-14 Score=131.63 Aligned_cols=46 Identities=35% Similarity=0.358 Sum_probs=39.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc--hhhhhhh
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT--AEYILNC 97 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps--l~d~~g~ 97 (449)
+.|.++++||||||||+|+++|.++|++| ||++| |+||. ++..++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli--D~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI--DGDPNRSATGWGKR 48 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE--EECTTCHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE--ECCCCCCHHHHhcC
Confidence 46788899999999999999999999999 99999 99984 5555553
No 31
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.49 E-value=7.8e-14 Score=141.94 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhhc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCK 98 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~~ 98 (449)
.+..|.+++|||||||||+|+++|..+|++|+|||+| |+|+ +++..||.+
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli--D~D~~~~l~~~lg~~ 193 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL--NIEQCGTTDVFFQAE 193 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE--ECCTTCCHHHHCCCS
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE--ECCCCCCHHHHcCCC
Confidence 3456666778999999999999999999999999999 8885 477788765
No 32
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.48 E-value=3.2e-13 Score=126.47 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCcc---ccHHHHHHHHHhcCCCCeeeccCCC
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH---LDEESAERVRKNFSPLPLSFLPHLP 344 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~---~q~~~l~~i~~~F~~lpi~~vP~~~ 344 (449)
.+.+|+.++ ..++.++.+....++..|+++-|+|+|+... ..+..++.+++.|+...+..||+..
T Consensus 140 ~vi~v~~~~-~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl~~Ip~~~ 207 (224)
T 1byi_A 140 PVILVVGVK-LGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLA 207 (224)
T ss_dssp CEEEEEECS-TTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEEEEECCCT
T ss_pred CEEEEecCC-CCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEEEECCCCc
Confidence 478999998 6899999999999999999999999996422 2355778888887533345678766
No 33
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.48 E-value=1.2e-13 Score=135.14 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=40.4
Q ss_pred CcE-EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc-c--hhhhhhhc
Q 013114 48 STT-LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP-T--AEYILNCK 98 (449)
Q Consensus 48 ~~r-ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp-s--l~d~~g~~ 98 (449)
|++ |.+.++||||||||+|+++|.++|++|+|||+| |+|| . ++..|+..
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli--D~D~~q~~l~~~l~~~ 55 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI--DLDLRQRTSARFFENR 55 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE--ECCTTTCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE--ECCCCCCCHHHHhCCC
Confidence 454 555568999999999999999999999999999 8888 3 77777653
No 34
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.34 E-value=2.3e-12 Score=107.44 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=65.4
Q ss_pred CCcceEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEE---------------EECCeeeeecCCcccccCccceEE
Q 013114 377 LMSSVKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLV---------------EAGDQRRVIHLPPQIQGKVGGARF 439 (449)
Q Consensus 377 ~~~~~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I---------------~~g~~rR~i~LP~~L~~~~~~A~~ 439 (449)
+.|++++.+ +.|.+++.|||+++++|+|+.. ++.|+| ..|+|+|.|.||..+..+.+.|+|
T Consensus 5 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~--~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~ 82 (102)
T 4fei_A 5 WTPAADWRDAGTHLDLLLDVPGVDAGTLALAED--GGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL 82 (102)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCCGGGCEEEEE--TTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE
T ss_pred ccCcEEEEEcCCEEEEEEECCCCchHhEEEEEE--CCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE
Confidence 458999988 4899999999999999999996 999999 458999999999999888999999
Q ss_pred eCCEEEEEcC
Q 013114 440 IERNLIVTMG 449 (449)
Q Consensus 440 ~~g~L~I~f~ 449 (449)
+||.|+|++|
T Consensus 83 ~~GvL~I~lp 92 (102)
T 4fei_A 83 AGGVLTVRFE 92 (102)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 9999999986
No 35
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.31 E-value=4.8e-12 Score=104.89 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCcceEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEEE--------------------CCeeeeecCCcccccCc
Q 013114 377 LMSSVKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA--------------------GDQRRVIHLPPQIQGKV 434 (449)
Q Consensus 377 ~~~~~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~--------------------g~~rR~i~LP~~L~~~~ 434 (449)
+.|++++.+ +.|.+++.|||+++++|+|+.. ++.|+|++ |+|+|.|.||..+..+.
T Consensus 3 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~--~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 80 (100)
T 3gla_A 3 WVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMD--KGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADG 80 (100)
T ss_dssp SCCCEEEEECSSEEEEEEECTTSCGGGCEEEEE--TTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTS
T ss_pred ccCcEEEEECCCEEEEEEECCCCCHHHEEEEEE--CCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHH
Confidence 458999988 4899999999999999999996 99999994 68999999999998899
Q ss_pred cceEEeCCEEEEEcC
Q 013114 435 GGARFIERNLIVTMG 449 (449)
Q Consensus 435 ~~A~~~~g~L~I~f~ 449 (449)
+.|+|+||.|+|++|
T Consensus 81 i~A~~~~GvL~I~~p 95 (100)
T 3gla_A 81 ITAAGRNGVLEIRIP 95 (100)
T ss_dssp CEEEEETTEEEEEEE
T ss_pred eEEEEeCCEEEEEEe
Confidence 999999999999986
No 36
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.25 E-value=4.8e-12 Score=109.00 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=64.5
Q ss_pred CcceEEec--CceEEEEEcCCCCCCceEEEeecCC-CeEEEEEC----------------CeeeeecCCcccccCcc-ce
Q 013114 378 MSSVKFDA--AKKSVTLLMPGFDKSEIKLYQYRGG-SELLVEAG----------------DQRRVIHLPPQIQGKVG-GA 437 (449)
Q Consensus 378 ~~~~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~g-deL~I~~g----------------~~rR~i~LP~~L~~~~~-~A 437 (449)
.|++++.+ +.|.+++.|||+++++|+|+.. + +.|+|++. .|+|+|.||..+..+.+ .|
T Consensus 24 ~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~--~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A 101 (123)
T 3aab_A 24 YPPVDMYEEGGYLVVVADLAGFNKEKIKARVS--GQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISG 101 (123)
T ss_dssp CSCEEEEEETTEEEEEEECCSCCGGGCEEEEE--TTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEE
T ss_pred CCcEEEEEcCCEEEEEEECCCCCHHHEEEEEe--CCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCee
Confidence 48899988 4899999999999999999996 8 99999986 79999999999999766 99
Q ss_pred EEeCCEEEEEcC
Q 013114 438 RFIERNLIVTMG 449 (449)
Q Consensus 438 ~~~~g~L~I~f~ 449 (449)
+|+||+|+|++|
T Consensus 102 ~~~~GvL~I~lP 113 (123)
T 3aab_A 102 KYENGVLTIRIP 113 (123)
T ss_dssp EEETTEEEEEEE
T ss_pred EEcCCEEEEEEE
Confidence 999999999986
No 37
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.13 E-value=1.2e-10 Score=103.83 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=65.1
Q ss_pred CcceEEecC--ceEEEEEcCCCCCCceEEEeecCCCeEEEEE--------------------CCeeeeecCCcccccCcc
Q 013114 378 MSSVKFDAA--KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA--------------------GDQRRVIHLPPQIQGKVG 435 (449)
Q Consensus 378 ~~~~~i~~~--~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~--------------------g~~rR~i~LP~~L~~~~~ 435 (449)
.|++++.++ .|.+++.|||+++++|+|... .|+.|+|++ |.|+|.|.||..+..+.+
T Consensus 43 ~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~-~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i 121 (151)
T 1gme_A 43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVE-DGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV 121 (151)
T ss_dssp GGCEEEEECSSEEEEEEECTTCCGGGEEEEEE-TTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred CCceEEEEcCCEEEEEEECCCCChHHEEEEEe-cCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccce
Confidence 489999884 899999999999999999983 478999995 789999999999999999
Q ss_pred ceEEeCCEEEEEcC
Q 013114 436 GARFIERNLIVTMG 449 (449)
Q Consensus 436 ~A~~~~g~L~I~f~ 449 (449)
.|+|+||+|+|++|
T Consensus 122 ~A~~~nGvL~I~lP 135 (151)
T 1gme_A 122 KAGLENGVLTVTVP 135 (151)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEE
Confidence 99999999999986
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.13 E-value=5.2e-10 Score=116.03 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dps 90 (449)
..++++++.|||||||||+++++|.+++++ |+||+++ |+||.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv--d~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV--SADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE--ECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE--ecCCC
Confidence 346888888999999999999999999999 9999999 99984
No 39
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.11 E-value=1.3e-10 Score=104.66 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=64.0
Q ss_pred CcceEEecC--ceEEEEEcCCCCCCceEEEeecCCCeEEEE---------------------ECCeeeeecCCcccccCc
Q 013114 378 MSSVKFDAA--KKSVTLLMPGFDKSEIKLYQYRGGSELLVE---------------------AGDQRRVIHLPPQIQGKV 434 (449)
Q Consensus 378 ~~~~~i~~~--~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~---------------------~g~~rR~i~LP~~L~~~~ 434 (449)
++|+++.++ .|.|++.|||+++++|+|... ++.|+|+ .|.|+|.|.||..+..+.
T Consensus 56 ~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~--~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~ 133 (161)
T 4eld_A 56 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAV--GDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN 133 (161)
T ss_dssp CCCEEEEECSSEEEEEEECTTCCGGGEEEEEE--TTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGG
T ss_pred ccceeEEEeCCEEEEEEECCCCChHhEEEEEE--CCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCccccc
Confidence 466999884 899999999999999999996 9999994 478999999999999988
Q ss_pred cceEEeCCEEEEEcC
Q 013114 435 GGARFIERNLIVTMG 449 (449)
Q Consensus 435 ~~A~~~~g~L~I~f~ 449 (449)
+.|+|+||+|+|++|
T Consensus 134 i~A~~~nGvL~I~lp 148 (161)
T 4eld_A 134 ASAKFENGVLSVILP 148 (161)
T ss_dssp CEEEEETTEEEEEEE
T ss_pred EEEEEECCEEEEEEE
Confidence 999999999999985
No 40
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.07 E-value=2.6e-10 Score=91.79 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEEe-CCEEEEEcC
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARFI-ERNLIVTMG 449 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~~-~g~L~I~f~ 449 (449)
+.|.+.+.|||+++++|+|... ++.|+|++ |.|+|.|.||..+..+.+.|+|+ ||.|+|++|
T Consensus 7 ~~~~v~~dlPG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP 82 (85)
T 3q9p_A 7 DRWRVSLDVNHFAPDELTVKTK--DGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP 82 (85)
T ss_dssp CEEEEEEECTTTCCSEEEEEEE--TTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred CEEEEEEECCCCChHHEEEEEE--CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence 4899999999999999999996 99999996 67999999999999999999998 999999986
No 41
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.03 E-value=1.2e-08 Score=101.78 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...+++.++|.+|+||||+++++|..++..|++|+++ |+|+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli--d~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA--AADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCC
Confidence 3468999999999999999999999999999999999 8887
No 42
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.02 E-value=5.9e-10 Score=90.59 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=57.8
Q ss_pred cCceEEEEEcCCCCCCceEEEeecCCCeEEEEEC-------------CeeeeecCCcccccCccceEE-eCCEEEEEcC
Q 013114 385 AAKKSVTLLMPGFDKSEIKLYQYRGGSELLVEAG-------------DQRRVIHLPPQIQGKVGGARF-IERNLIVTMG 449 (449)
Q Consensus 385 ~~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~g-------------~~rR~i~LP~~L~~~~~~A~~-~~g~L~I~f~ 449 (449)
++.|.+.+.|||+++++|+|... ++.|+|++- .|+|.|.||..+..+.+.|+| +||.|+|++|
T Consensus 5 ~~~~~v~~dlPG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~p 81 (90)
T 2y1y_A 5 KDRFSVNLDVKHFSPEELKVKVL--GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGP 81 (90)
T ss_dssp -CCEEEEEECTTSCGGGEEEEEE--TTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEEC
T ss_pred CCEEEEEEECCCCcHHHeEEEEE--CCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence 35899999999999999999996 999999973 499999999999998999999 9999999986
No 43
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.02 E-value=5.9e-09 Score=102.87 Aligned_cols=40 Identities=35% Similarity=0.431 Sum_probs=37.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
.+++.++|++|+||||+++++|..++.+|+||+++ |+|+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~--~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV--GADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE--ECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--ecCCC
Confidence 68888899999999999999999999999999999 88873
No 44
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=98.95 E-value=1.8e-09 Score=90.53 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=60.4
Q ss_pred eEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-------------CCeeeeecCCcccccCccceEE-eCCEE
Q 013114 381 VKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-------------GDQRRVIHLPPQIQGKVGGARF-IERNL 444 (449)
Q Consensus 381 ~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-------------g~~rR~i~LP~~L~~~~~~A~~-~~g~L 444 (449)
.++.+ +.|.|.+.|||+++++|+|... ++.|+|++ ..|+|.|.||..+..+.+.|+| +||.|
T Consensus 5 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~--~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL 82 (106)
T 3l1e_A 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQ--EDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGML 82 (106)
T ss_dssp EEEEECSSEEEEEEECTTSCGGGEEEEEE--TTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEE
T ss_pred eEEEEcCCEEEEEEECCCCChHHEEEEEE--CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEE
Confidence 34555 4899999999999999999996 99999997 4499999999999999999999 99999
Q ss_pred EEEcC
Q 013114 445 IVTMG 449 (449)
Q Consensus 445 ~I~f~ 449 (449)
+|++|
T Consensus 83 ~I~~P 87 (106)
T 3l1e_A 83 TFSGP 87 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 45
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.93 E-value=6.1e-08 Score=95.43 Aligned_cols=41 Identities=37% Similarity=0.401 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..+++.++||+|+||||++.++|..++..|.+|+++ |.|+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~--~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV--AADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE--ECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe--cCCcc
Confidence 467888889999999999999999999999999999 88874
No 46
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=98.90 E-value=2.4e-09 Score=88.93 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=59.0
Q ss_pred EEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEEEC-------------CeeeeecCCcccccCccceEE-eCCEEE
Q 013114 382 KFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEAG-------------DQRRVIHLPPQIQGKVGGARF-IERNLI 445 (449)
Q Consensus 382 ~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~g-------------~~rR~i~LP~~L~~~~~~A~~-~~g~L~ 445 (449)
++.+ +.|.+.+.|||+++++|+|... ++.|+|++- .|+|.|.||..+..+.+.|+| +||.|+
T Consensus 5 di~e~~~~~~v~~dlPG~~~edI~V~v~--~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~ 82 (101)
T 2wj5_A 5 QVPTDPGYFSVLLDVKHFSPEEISVKVV--GDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLS 82 (101)
T ss_dssp CCCCCSSCEEEEEECTTSCGGGEEEEEE--TTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEE
T ss_pred EEEEeCCEEEEEEECCCCcHHHeEEEEE--CCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEE
Confidence 4444 4899999999999999999996 999999971 299999999999999999999 899999
Q ss_pred EEcC
Q 013114 446 VTMG 449 (449)
Q Consensus 446 I~f~ 449 (449)
|++|
T Consensus 83 I~lP 86 (101)
T 2wj5_A 83 IQAT 86 (101)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9986
No 47
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.85 E-value=1.8e-07 Score=96.99 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++++|.+|+||||+++++|.+++++|+||+++ ++|+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv--~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV--CSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCC
Confidence 368999999999999999999999999999999999 8887
No 48
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.82 E-value=1.4e-07 Score=97.47 Aligned_cols=41 Identities=37% Similarity=0.401 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..+++.+.|++|+||||+++++|.+++..|++|+++ |+|+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv--d~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV--AADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe--ecccc
Confidence 468888889999999999999999999999999999 88863
No 49
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.76 E-value=1.4e-07 Score=90.73 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=57.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc---c-ccHHHHHHHHHhcCCCCee-eccCCCCCCccchh
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP---H-LDEESAERVRKNFSPLPLS-FLPHLPTDSSLDWN 352 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~---~-~q~~~l~~i~~~F~~lpi~-~vP~~~~e~~~~~~ 352 (449)
..++||+.++ ..++..+...+.++...|+++.|||+|+-+ . ..+...+.|++. +|+. .||+.....
T Consensus 158 ~pVILV~~~~-~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~---vpvLG~iP~~~~~l----- 228 (251)
T 3fgn_A 158 AAALVVVTAD-LGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI---AMVRAALPAGAASL----- 228 (251)
T ss_dssp CEEEEEECSS-TTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH---SCEEEEEETTGGGC-----
T ss_pred CCEEEEEcCC-CccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh---CCEEEEeeCCCCcC-----
Confidence 4679999998 689999999999999999999999999532 1 123456777776 6665 679877642
Q ss_pred hhhccccHHHHHHHh
Q 013114 353 TIMLNPAGKEARDLL 367 (449)
Q Consensus 353 ~~g~~~L~~la~~lf 367 (449)
..+++...+...|
T Consensus 229 --~~~~~~~~~~~~~ 241 (251)
T 3fgn_A 229 --DAGDFAAMSAAAF 241 (251)
T ss_dssp --CHHHHHHHHHHHS
T ss_pred --CHHHHHHHHhccc
Confidence 2345556655544
No 50
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.75 E-value=1.8e-07 Score=88.73 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=50.5
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCc---cccHHHHHHHHHhcCCCCeeecc
Q 013114 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASP---HLDEESAERVRKNFSPLPLSFLP 341 (449)
Q Consensus 279 ~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~---~~q~~~l~~i~~~F~~lpi~~vP 341 (449)
.++||+.+. ..++..+...+..+...|+++.|+|+|+-. ...+...+.+++.++-..+..||
T Consensus 142 pviLV~~~~-~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 142 PVLLVSAIK-VGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp CEEEEEECS-TTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSEEEE
T ss_pred CEEEEEcCC-cchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEEECC
Confidence 579999998 689999999999999999999999999532 12345678888888666667788
No 51
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.73 E-value=5.7e-07 Score=88.99 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.+++++.|.+|+||||+++++|..++..|.+|+++ ++|+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv--~~D~ 142 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA--AADT 142 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EECT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE--cccc
Confidence 4568999999999999999999999999999999999 7776
No 52
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=98.68 E-value=2.6e-08 Score=98.72 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCCCceEEEeecCCCeEEEEE------------CCeeeeecCCcccccCccceEEe-CCEEEEEcC
Q 013114 387 KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA------------GDQRRVIHLPPQIQGKVGGARFI-ERNLIVTMG 449 (449)
Q Consensus 387 ~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~------------g~~rR~i~LP~~L~~~~~~A~~~-~g~L~I~f~ 449 (449)
.|.|++.|||++|++|+|... ++.|+|++ |.|+|.|.||..+..+.+.|+|+ ||+|+|++|
T Consensus 113 ~~~v~~dlPG~~~edI~V~v~--~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lP 186 (314)
T 2bol_A 113 HFKVYFNVKNFKAEEITIKAD--KNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAP 186 (314)
T ss_dssp EEEEEEECTTCCTTTEEEEEE--TTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEE
T ss_pred EEEEEEECCCCchHHeEEEEE--CCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEe
Confidence 699999999999999999996 99999997 89999999999999999999999 999999985
No 53
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.63 E-value=2e-08 Score=93.02 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=73.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccCCCCeeecCCcceeecCchhhhhhhHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWL 128 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~~~p~~i~~~L~~~eid~~~~~~~~~~~~ 128 (449)
..|++++|+| .||||.|.++|+.++.+|+||+++ .+..+- ....+..+..+| .+++....
T Consensus 29 g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~v--QF~Kg~-------~~~gE~~~l~~L-~v~~~~~g--------- 88 (196)
T 1g5t_A 29 GIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVV--QFIKGT-------WPNGERNLLEPH-GVEFQVMA--------- 88 (196)
T ss_dssp CCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEE--ESSCCS-------SCCHHHHHHGGG-TCEEEECC---------
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEE--EeeCCC-------CCccHHHHHHhC-CcEEEEcc---------
Confidence 5899999999 999999999999999999999999 443310 000111111111 01110000
Q ss_pred HHHHHhhhhcccccCCccccccCCCCC--hHHHHHHHHHHHHHHHhcccccccCcCCCccEEEEcCCCchHHHHHhhhHH
Q 013114 129 KQADARLNMTQGVLGGVVGEELGVLPG--MDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSS 206 (449)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~el~~~Pg--~~e~~~l~~l~~l~~~l~~~~~~~~~~~~yD~IVvD~pPtg~tlrlL~lP~ 206 (449)
.+. . -..+. -++..+...+....+.+ .+++||+||+|.-.....+.+|..++
T Consensus 89 ----------~gf-~-------~~~~~~~~~~~~a~~~l~~a~~~l--------~~~~yDlvILDEi~~al~~g~l~~~e 142 (196)
T 1g5t_A 89 ----------TGF-T-------WETQNREADTAACMAVWQHGKRML--------ADPLLDMVVLDELTYMVAYDYLPLEE 142 (196)
T ss_dssp ----------TTC-C-------CCGGGHHHHHHHHHHHHHHHHHHT--------TCTTCSEEEEETHHHHHHTTSSCHHH
T ss_pred ----------ccc-c-------cCCCCcHHHHHHHHHHHHHHHHHH--------hcCCCCEEEEeCCCccccCCCCCHHH
Confidence 000 0 00000 01222233344444433 35789999999999999999999999
Q ss_pred HHHHHHHH
Q 013114 207 KARLYLKY 214 (449)
Q Consensus 207 ~l~~~l~~ 214 (449)
++.|+.+|
T Consensus 143 v~~~l~~R 150 (196)
T 1g5t_A 143 VISALNAR 150 (196)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhC
Confidence 99887643
No 54
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=98.63 E-value=3.6e-08 Score=89.86 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred eEEec--CceEEEEEcCCCCCCceEEEeecCCCeEEEEEC-------------CeeeeecCCcccccCccceEE-eCCEE
Q 013114 381 VKFDA--AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEAG-------------DQRRVIHLPPQIQGKVGGARF-IERNL 444 (449)
Q Consensus 381 ~~i~~--~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~g-------------~~rR~i~LP~~L~~~~~~A~~-~~g~L 444 (449)
+++.+ +.|.|.+.|||++|++|+|... ++.|+|++- .|+|.|.||..+..+.+.|+| +||+|
T Consensus 66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~--~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL 143 (175)
T 2klr_A 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVL--GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVL 143 (175)
T ss_dssp ---CCCCSEEEEEECCSSCCGGGEEEEEE--TTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCE
T ss_pred eEEEEcCCeEEEEEECCCCChHHEEEEEE--CCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEE
Confidence 45655 4899999999999999999996 999999971 389999999999998899999 89999
Q ss_pred EEEcC
Q 013114 445 IVTMG 449 (449)
Q Consensus 445 ~I~f~ 449 (449)
+|++|
T Consensus 144 ~I~lP 148 (175)
T 2klr_A 144 TVNGP 148 (175)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 55
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.61 E-value=5.6e-07 Score=93.10 Aligned_cols=40 Identities=38% Similarity=0.429 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++++++|++|+||||+++++|.+++.+|++|+++ ++|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv--~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV--AADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE--EECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--ecCc
Confidence 469999999999999999999999999999999999 7775
No 56
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.59 E-value=1e-06 Score=92.85 Aligned_cols=40 Identities=40% Similarity=0.617 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.++++.+.|.+||||||+++++|.+++++|+||++| |+|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV--d~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI--CADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--EECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE--eccc
Confidence 467888889999999999999999999999999999 8876
No 57
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=98.59 E-value=8e-08 Score=95.25 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=57.7
Q ss_pred ceEEEEEc-CCCCCCceEEEeecCCCeEEEEE----------------CCeeeeecCCcccccCccceEEeCCEEEEEcC
Q 013114 387 KKSVTLLM-PGFDKSEIKLYQYRGGSELLVEA----------------GDQRRVIHLPPQIQGKVGGARFIERNLIVTMG 449 (449)
Q Consensus 387 ~y~l~l~L-P~~~~~~l~l~~~~~gdeL~I~~----------------g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f~ 449 (449)
.|.+.+.| ||++|++|+|... ++.|+|++ |.|+|.|.||..+..+.+.|+|+||+|+|++|
T Consensus 234 ~~~v~~~ldPG~~~edi~V~v~--~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~P 311 (314)
T 2bol_A 234 KIHLELKVDPHFAPKDVKVWAK--GNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAP 311 (314)
T ss_dssp EEEEEEECCTTCCGGGEEEEES--SSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEEE
T ss_pred EEEEEEEcCCCCChHHeEEEEE--CCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEEe
Confidence 69999999 9999999999995 99999985 88999999999999999999999999999976
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.46 E-value=1.6e-07 Score=88.90 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=36.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.-.++++|||||||||+|.++|..++++|++|+++ |.||
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~--d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG--VVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE--EeCC
Confidence 44588999999999999999999999999999999 9988
No 59
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.45 E-value=2.8e-06 Score=81.28 Aligned_cols=37 Identities=11% Similarity=-0.117 Sum_probs=34.3
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEec
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTA 316 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~ 316 (449)
..++||+.++ .-++..+...+++|...|++ .|||+|+
T Consensus 162 ~pVILV~~~~-lg~i~~~~lt~~~l~~~g~~-~GvIlN~ 198 (242)
T 3qxc_A 162 AKMLLISHDN-LGLINDCLLNDFLLKSHQLD-YKIAINL 198 (242)
T ss_dssp CEEEEEECCS-TTHHHHHHHHHHHHHTSSSC-EEEEECC
T ss_pred CCEEEEEcCC-CcHHHHHHHHHHHHHhCCCC-EEEEEeC
Confidence 4689999998 68999999999999999999 9999995
No 60
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.39 E-value=2.2e-07 Score=88.44 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
...+++++|||||||||++.++|.+++ .|+||++| |.||.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv--d~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV--NLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE--ECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE--eCCCC
Confidence 368999999999999999999999999 99999999 99985
No 61
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.34 E-value=6.1e-07 Score=90.34 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=36.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
...++.++|++|+||||++.+++..++..|+||+++ +.||+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi--~~Dp~ 118 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL--AVDPS 118 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--EEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE--ecCCC
Confidence 357888899999999999999999999999999999 99985
No 62
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.81 E-value=8.6e-06 Score=84.29 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=37.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
++++++.|++||||||+++++|.+++++|+||+++ |+||.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv--~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI--AADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE--CCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--ecccc
Confidence 57888899999999999999999999999999999 99983
No 63
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.73 E-value=2.5e-05 Score=76.71 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=36.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d~Dp 89 (449)
..+++.+.|.+|+||||+++++|..++. +|++|+++ ++|+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv--~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI--TTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE--ECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE--ecCc
Confidence 3578889999999999999999999996 89999999 8876
No 64
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.68 E-value=0.0023 Score=67.06 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|.+|+||||+...+|..+...|.+|++. +.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~--g~D~ 331 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA--AGDT 331 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--CCCT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe--cCcc
Confidence 468999999999999999999999999889999998 6664
No 65
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.49 E-value=0.00023 Score=71.75 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-+..+++++.|++|+||||+|.++|..+++.|.+|+.+ |+..+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyi--d~E~s 102 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI--DAEHA 102 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--ESSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCC
Confidence 34568999999999999999999999999999999999 76543
No 66
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.29 E-value=0.00058 Score=69.03 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=37.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
+..+++++.|..|+||||+|.++|..+++.|.+|+.+ |++.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi--~~E~s 113 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI--DAEHA 113 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE--ESSCC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEE--ECCCC
Confidence 4567889999999999999999999999999999999 77654
No 67
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.16 E-value=0.00041 Score=62.54 Aligned_cols=40 Identities=20% Similarity=0.098 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+++++.++|..|+||||++..++..+..+|++|.++ ..||
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i--k~~~ 42 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV--KHHG 42 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE--EeCC
Confidence 478899999999999999999999999999999999 6555
No 68
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.12 E-value=0.00065 Score=70.32 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=42.7
Q ss_pred cEEEEEe-CCC---CCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhccC
Q 013114 49 TTLITFL-GKG---GSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIG 100 (449)
Q Consensus 49 ~rii~~~-GKG---GVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~~ 100 (449)
.++++++ ... |.||||+|++||..+|+.|+||+++ =--|+++..||.+.+
T Consensus 57 ~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi--LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 57 GKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC--LREPSLGPSFGIKGG 110 (557)
T ss_dssp CEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCSHHHHHTCCC
T ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE--eCCCCccccCCCCCC
Confidence 3555555 577 9999999999999999999999999 577899999998854
No 69
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.07 E-value=0.0045 Score=69.00 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=47.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCCcccEEEEecCccccHHHHHHHHHhcC-CCCeeeccCCCCC
Q 013114 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNFS-PLPLSFLPHLPTD 346 (449)
Q Consensus 278 t~v~LVt~PE~~~~i~Ea~r~~~~L~~~Gi~V~~vvvN~~~~~q~~~l~~i~~~F~-~lpi~~vP~~~~e 346 (449)
.-++||.... .-++..+.-.+.++...|++|.|||+|+.... ..+.+.+.+. ..++..+|.++..
T Consensus 232 ~PVILV~d~~-lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~---~~~~l~~~l~~~~~v~vLg~lP~~ 297 (831)
T 4a0g_A 232 LPGILVGDGR-LGGISGTIAAYESLKLRGYDIAAVVFEDHGLV---NEVPLTSYLRNKVPVLVLPPVPKD 297 (831)
T ss_dssp CCEEEECCCS-TTHHHHHHHHHHHHHTTTCCEEEEEEECCSSC---THHHHHHHTTTSSCEEEECCCCCC
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHHHHCCCcEEEEEEeCCchh---HHHHHHHHHHhCCCceeeCCCCCC
Confidence 4579999997 68999999999999999999999999954322 2233444332 5666666666654
No 70
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.91 E-value=0.0019 Score=64.74 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-+..+++.+.|..|+||||+|.++|..++..|.+|+.+ |++.+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi--~~E~~ 100 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI--DAEHA 100 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE--ESSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE--ECCCC
Confidence 34568999999999999999999999999999999999 66543
No 71
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.73 E-value=0.0058 Score=63.17 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+...++++.|..|+||||+|.++|...|.+|.+|+.+ |...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f--SlEm 235 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH--SLEM 235 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE--CSSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE--ECCC
Confidence 3468999999999999999999999999999999999 6654
No 72
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.72 E-value=0.0076 Score=59.22 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++++.|..|+||||++.++|..++.+|.+|+.+ |+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~--slE~ 106 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH--SLEM 106 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE--ESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--ECCC
Confidence 358999999999999999999999999999999999 5543
No 73
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.71 E-value=0.0013 Score=65.47 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=36.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++.++|++|+||||+..+++..++..|.+|.++ +.||.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~--~~d~~ 95 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI--AVDPS 95 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE--EECCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE--eecCC
Confidence 57788899999999999999999999999999999 88884
No 74
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.71 E-value=0.0016 Score=62.18 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=35.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|.+|+++|-.|+||||+|..+|..+...|..++++ |.|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~--~~D~ 42 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL--GSDL 42 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--CTHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE--CchH
Confidence 67999999999999999999999999899999888 7663
No 75
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.0012 Score=59.14 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..++++.|..|+||||++..+|..+...|.++.++ |.|
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~--~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL--DGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe--eHH
Confidence 58899999999999999999999999999999888 654
No 76
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.67 E-value=0.012 Score=60.59 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHS 86 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d 86 (449)
...++++.|..|+||||+|.++|...+. .|.+|+.+|..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4589999999999999999999999997 59999999443
No 77
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.67 E-value=0.0094 Score=59.89 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-+..+++.+.|..|+||||++.++|..++..|.+|+.+ |+..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI--d~E~s 100 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI--DAEHA 100 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE--ESSCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE--ecccc
Confidence 34568999999999999999999999999999999999 76554
No 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=57.88 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|++|++.|-.|+||||+|..+|..+...|+.+..+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 47899999999999999999999999889988888
No 79
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.36 E-value=0.012 Score=60.65 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=34.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEEecC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLVLHS 86 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv~~d 86 (449)
...++++.|..|+||||++.++|..++. .|.+|+.++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3589999999999999999999999997 59999999433
No 80
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.32 E-value=0.0044 Score=60.90 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=35.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|.+|+||||+...+|..+...|.+|++. +.|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~--g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC--AGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE--CCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE--eecC
Confidence 357888999999999999999999999889999999 6664
No 81
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.31 E-value=0.0037 Score=56.36 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+|+.++.++|..|+||||+...+...+...|++|..+ ..|+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i--~~~~ 44 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI--KHTH 44 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE--EECC
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE--eeCC
Confidence 4578999999999999999999999999999999988 4444
No 82
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=96.31 E-value=0.041 Score=54.96 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=44.4
Q ss_pred EEEEEecCCCcch-----------HHHHHHHHHHHHH-----cCCcccEEEEecCc---cccHHHHHHHHHhcCCCCeee
Q 013114 279 GCFLVMNPNNRTS-----------VNSALRYWGCTIQ-----AGAQVAGAICTASP---HLDEESAERVRKNFSPLPLSF 339 (449)
Q Consensus 279 ~v~LVt~PE~~~~-----------i~Ea~r~~~~L~~-----~Gi~V~~vvvN~~~---~~q~~~l~~i~~~F~~lpi~~ 339 (449)
.++||..|. .-. ++++..++.++.. .|++|-|+++|... ...+.+++++++.+ ++|+.-
T Consensus 256 ~vILv~~~~-~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~-glPv~d 333 (349)
T 2obn_A 256 QLVLVHRAG-QTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAET-GLPCTD 333 (349)
T ss_dssp EEEEEEETT-CCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHH-CSCEEC
T ss_pred eEEEEECCC-CceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHH-CCCEEE
Confidence 678888875 233 4888888888866 88999999999532 22345899999987 677664
No 83
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.21 E-value=0.14 Score=54.21 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCcEEEEEe-CC-CCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFL-GK-GGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~-GK-GGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.|++.||++ |- .|+||+.+|++++..|.++|+||..+ -.||
T Consensus 10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~--k~~p 52 (550)
T 1vco_A 10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAI--KIDP 52 (550)
T ss_dssp CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEE--EEEC
T ss_pred cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEe--eccc
Confidence 367888888 65 59999999999999999999999998 6665
No 84
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0055 Score=56.76 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
...++++.|..|+||||++.++|..++..|.+|+.+ +++.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~--~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV--ALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE--ESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE--EccCC
Confidence 457999999999999999999999999999999999 66654
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.09 E-value=0.0055 Score=55.43 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=31.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+.+++.|..|+||||+|.+++..+...|.+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6788899999999999999999999999999887
No 86
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.0048 Score=56.40 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=33.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
.+.+++.|++|+||||+..+++..+... +++.++ +.||.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i--~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM--LGDVV 68 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE--ECSCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE--ecCCC
Confidence 5788889999999999999999887655 889999 76663
No 87
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.04 E-value=0.0066 Score=60.30 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+...++.+.|..|+||||+...+|..+...|.+|+++ +.|.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~--g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA--ASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE--eecc
Confidence 3468999999999999999999999999999999999 5554
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.86 E-value=0.012 Score=57.76 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|..|+||||+...+|..+...|.+|++. +.|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~--g~d~ 138 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA--AGDT 138 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE--CCCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE--eecc
Confidence 468999999999999999999999999889999998 6654
No 89
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.80 E-value=0.0084 Score=54.58 Aligned_cols=39 Identities=31% Similarity=0.366 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++.++|..|+||||++..++..+...|.++.++ +.|.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~--~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF--HMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE--EGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe--ccCc
Confidence 58999999999999999999999998888899888 6553
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.75 E-value=0.0072 Score=53.70 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv 83 (449)
.+++++.|..|+||||++.++|..+. ..|.+++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47889999999999999999999997 678888776
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.75 E-value=0.011 Score=53.95 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=35.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++.+.|..|+||||++..+|..++..|.+|+++ +.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~--~~~~~ 62 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV--TTEES 62 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE--ESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE--EcccC
Confidence 47899999999999999999999998888899999 65543
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.0082 Score=54.62 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=32.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|++|+||||++..+|. ..|.+|+.+ +++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i--~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYV--DTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEE--ESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEE--ECCC
Confidence 457999999999999999999998 678899999 6654
No 93
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=95.71 E-value=0.049 Score=43.12 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCCCceEEEeecCCCeEEEEE-----CCeeeeecCCcccccCccceEEeCCEEEEEc
Q 013114 386 AKKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-----GDQRRVIHLPPQIQGKVGGARFIERNLIVTM 448 (449)
Q Consensus 386 ~~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-----g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f 448 (449)
+...|.+.+|++.++++++... .+.|.|++ ..|...+.|+..+..+...+++.++.|.|++
T Consensus 12 ~~V~v~i~~~~v~~~~v~v~~~--~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L 77 (92)
T 2xcm_C 12 EEVVVTVFAKGIPKQNVNIDFG--EQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICL 77 (92)
T ss_dssp TEEEEEEECCSCCGGGEEEEEC--SSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEE
T ss_pred CEEEEEEEECCCChHHeEEEEE--CCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEE
Confidence 3677899999999999999985 89999997 3599999999999998889999999999986
No 94
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.66 E-value=0.006 Score=54.19 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|+++|..|+||||++..+|..+...|.+.-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 36899999999999999999999998888656666
No 95
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.62 E-value=0.016 Score=58.27 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|..|+||||+...+|..+...|.+|++. +.|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~--g~D~ 195 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA--AGDT 195 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE--CCCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe--cccc
Confidence 468999999999999999999999999889999999 6654
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.55 E-value=0.013 Score=52.97 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVL 84 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~ 84 (449)
++++++|.-|+||||.+..++..+..+|++|+++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999999999999999999999999999983
No 97
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.018 Score=52.61 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|.+++|.-|+||||.+..+|..+..+|++|+++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 47999999999999999999999999999999999
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.49 E-value=0.016 Score=54.36 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVL 84 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~ 84 (449)
..+++++|.-|.||||.+..+|..++.+|++|+++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 479999999999999999999999999999999983
No 99
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=95.45 E-value=0.037 Score=45.88 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=58.6
Q ss_pred cceEEecC--ceEEEEEcCCCCCCceEEEeecCCCeEEEEE-----CCeeeeecCCcccccCccceEEeCCEEEEEc
Q 013114 379 SSVKFDAA--KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA-----GDQRRVIHLPPQIQGKVGGARFIERNLIVTM 448 (449)
Q Consensus 379 ~~~~i~~~--~y~l~l~LP~~~~~~l~l~~~~~gdeL~I~~-----g~~rR~i~LP~~L~~~~~~A~~~~g~L~I~f 448 (449)
+.++..+. ...|.+.+|+++++++++... ++.|.|++ ..|...+.|+..+..+...++++++.|.|++
T Consensus 10 ~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~--~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L 84 (114)
T 1rl1_A 10 IKYDWYQTESQVVITLMIKNVQKNDVNVEFS--EKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKL 84 (114)
T ss_dssp CCEEEEECSSEEEEEECCCSCCGGGEEEECS--SSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEE
T ss_pred CCccEEeCCCEEEEEEEeCCCCHHHCEEEEE--cCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEE
Confidence 45666663 678999999999999999984 88999987 2589999999999998889999999999986
No 100
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.44 E-value=0.013 Score=53.69 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.+++.|..|+||||++.++|..+...|.++..+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46788999999999999999999999999999988
No 101
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.41 E-value=0.012 Score=52.20 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..++.++|..|+||||++..++..+...|..++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 57888999999999999999999987789888877
No 102
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.34 E-value=0.014 Score=53.39 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=33.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~D 88 (449)
..++++.|..|+||||++..++..+. ..|.++..+ |.|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~--~~d 63 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL--DGD 63 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE--CHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE--CCh
Confidence 57899999999999999999999998 789999888 744
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.26 E-value=0.0096 Score=52.46 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=27.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
.++|+++|..|+||||+|..+|..+ |...+.+ |.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~--~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAF--GVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEE--EHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEe--ccc
Confidence 4789999999999999999988665 4455555 544
No 104
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.25 E-value=0.017 Score=56.60 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+. ++|++|+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 46788899999999999999999999 999999888
No 105
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=95.20 E-value=0.49 Score=49.95 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=34.0
Q ss_pred cEEEEEe-CC-CCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFL-GK-GGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~-GK-GGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++.||++ |- .|+||+++|++++..|+++|+||..+ -.||
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~--k~~p 43 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIM--KLDP 43 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEE--EEEC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeee--eccc
Confidence 4777777 64 69999999999999999999999998 6665
No 106
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.19 E-value=0.011 Score=55.76 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-----cCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-----AGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-----~G~rvLLv~~d~D 88 (449)
.+.+|.++|..|+||||+|..+|..+.. .|++++++ |+|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i--~~D 64 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVIL--SQD 64 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEE--EGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEE--ecC
Confidence 4678999999999999999999887653 36788888 666
No 107
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.19 E-value=0.022 Score=50.83 Aligned_cols=33 Identities=39% Similarity=0.459 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|+++|--|+||||++..++..+...|..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 688999999999999999999999999999765
No 108
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.17 E-value=0.016 Score=52.60 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
..++.+.|..|+||||++..+|..+...|..+..+ |.|
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~--d~d 62 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYIL--DGD 62 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--EHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEe--cCc
Confidence 58999999999999999999999998778776666 544
No 109
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.15 E-value=0.022 Score=51.58 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+|+++|-.|+||||+|..+|..+...|..|..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 36899999999999999999999999899998655
No 110
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.13 E-value=0.012 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
||++|+++|-.|+||||+|..+|..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998766
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.03 E-value=0.014 Score=50.73 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|++++++|-.|+||||+|..+|..+ |... + |.|.
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l---~~~~--i--~~d~ 34 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKEL---KYPI--I--KGSS 34 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHH---CCCE--E--ECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCee--e--cCcc
Confidence 4688999999999999999888665 5544 4 6665
No 112
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.02 E-value=0.017 Score=53.17 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----HcC-CceEEE
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYA-----MAG-LSTCLV 83 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA-----~~G-~rvLLv 83 (449)
.+|-|.+++|..|+|||+.|.+.+...+ ++| +++.+.
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~ 45 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFT 45 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEE
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEe
Confidence 3566999999999999999998877766 678 555555
No 113
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.99 E-value=0.019 Score=50.86 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.|+++|+++|..|+||||+|..+|..+
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999988765
No 114
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.96 E-value=0.028 Score=56.00 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++++.|..|+||||++.++|..++..|.+|+.+ |...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f--SlEm 84 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF--SLEM 84 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE--ESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--eCCC
Confidence 57999999999999999999999999999999999 5554
No 115
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.93 E-value=0.018 Score=61.09 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..+++++|..|+||||+|..++..+..+|+++.++ |.|-
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~l--d~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLL--DGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--CHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEE--CchH
Confidence 57899999999999999999999999999999999 7663
No 116
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.92 E-value=0.026 Score=59.49 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++.+|++.|-.|+||||+|..+|.++...|.++.++ +.|-
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~--s~D~ 73 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVF--NVGE 73 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEe--cccH
Confidence 34578999999999999999999999998889999988 6654
No 117
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.92 E-value=0.025 Score=50.20 Aligned_cols=33 Identities=39% Similarity=0.402 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|+++|-.|+||||+|..+|..+...|..++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 688999999999999999999998889887754
No 118
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.91 E-value=0.011 Score=57.50 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..+|.++|..|+||||+|..++..+...|.++.++ |+|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI--~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI--EGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE--EGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEe--ecch
Confidence 46899999999999999999999888888899999 7664
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.91 E-value=0.017 Score=50.69 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=26.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
|+++|++.|..|+||||+|..++.. ......+ |.|
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i--~~d 35 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAK----NPGFYNI--NRD 35 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH----STTEEEE--CHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhh----cCCcEEe--cHH
Confidence 4679999999999999999988762 2335566 654
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.036 Score=48.28 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-------cCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-------AGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-------~G~rvLLv 83 (449)
.+.+++.|..|+||||++.++|..+.. .|.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 356788999999999999999998876 35555555
No 121
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.85 E-value=0.027 Score=50.89 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|+++|--|+||||+|..+|..+...|..+.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 46899999999999999999999998889888655
No 122
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.85 E-value=0.028 Score=51.94 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
+...++++.|..|+|||++|.++|...+ +.|.+|+.+ +++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~--s~E~ 69 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV--TLEE 69 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE--ESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee--cccC
Confidence 4468999999999999999999998755 468999999 5554
No 123
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.84 E-value=0.017 Score=52.84 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...+++.|.+||||||+..+++..+... +++..+ +.|+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i--~~d~ 75 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACI--AGDV 75 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEE--EEET
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE--ECCC
Confidence 4566777999999999999999887655 788888 5554
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.84 E-value=0.13 Score=61.88 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..+++++.|..|+|||++|.++|..++++|.+++.+ |+..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi--~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI--DAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--CTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE--Ecccc
Confidence 478999999999999999999999999999999999 87754
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.82 E-value=0.026 Score=50.16 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
++++|++.|-.|+||||+|..+|..+ |..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~~~ 33 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RLPL 33 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CCeE
Confidence 45799999999999999999998776 5543
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.75 E-value=0.019 Score=50.01 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..++.+.|..|+||||++.+++..+...|+++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 46788999999999999999999988889888887
No 127
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.66 E-value=0.017 Score=50.96 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
||++++++|..|+||||+|..+|..+
T Consensus 3 ~m~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 3 LAKNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp --CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999998765
No 128
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.62 E-value=0.022 Score=50.54 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=27.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++++|+++|..|+||||+|..+|..+ |... + |+|-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l---~~~~--i--~~d~ 38 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT---KRIL--Y--DSDK 38 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH---CCCE--E--EHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CCCE--E--EChH
Confidence 35788899999999999999998766 5544 4 6554
No 129
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.52 E-value=0.034 Score=50.02 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|++.|-.|+||||+|..+|..+...| +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 6899999999999999999999987777 66543
No 130
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.50 E-value=0.034 Score=48.46 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
.+.+++.|..|+||||+|.++|..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356689999999999999999998876
No 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.45 E-value=0.029 Score=50.68 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++++++++|-.|+||||+|..+|..+ |.. ++ |.|.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g~~--~i--~~d~ 51 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---GYP--FI--EGDA 51 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---TCC--EE--EGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCE--EE--eCCc
Confidence 36789999999999999999998776 543 45 6554
No 132
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.41 E-value=0.033 Score=60.01 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=34.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
+..+|+++|-.|+||||+|.++|..+.++|..++.+ |.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l--DgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL--DGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--SHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe--chH
Confidence 358999999999999999999999999999999888 643
No 133
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.08 Score=45.51 Aligned_cols=69 Identities=4% Similarity=0.118 Sum_probs=59.9
Q ss_pred cceEEecC--ceEEEEEcCCCC--CCceEEEeecCCCeEEEEECCeeeeecCCccccc-CccceEEe--CCEEEEEcC
Q 013114 379 SSVKFDAA--KKSVTLLMPGFD--KSEIKLYQYRGGSELLVEAGDQRRVIHLPPQIQG-KVGGARFI--ERNLIVTMG 449 (449)
Q Consensus 379 ~~~~i~~~--~y~l~l~LP~~~--~~~l~l~~~~~gdeL~I~~g~~rR~i~LP~~L~~-~~~~A~~~--~g~L~I~f~ 449 (449)
|-++++++ ...++|.+|.+. .+++++... |.++....-.|.=.+.||..+.. .-..|+|+ .|.|+|+++
T Consensus 4 P~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~--~~~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLp 79 (134)
T 2k8q_A 4 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQ--ENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVA 79 (134)
T ss_dssp SEEEEEECSSEEEEEEECCSSCCCSSSCCCEEC--SSSEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCEEEEEEEcCccccCccccEEEEe--CCEEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEe
Confidence 66777775 566899999999 889999985 99999999999999999999965 67889987 699999874
No 134
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.34 E-value=0.032 Score=58.16 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
+...++++.|..|+||||++.++|..++.+ |.+|+.+ |+..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~--s~E~ 281 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA--MLEE 281 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE--ESSS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE--eccC
Confidence 446899999999999999999999999987 9999999 6554
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.33 E-value=0.13 Score=50.92 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=37.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEEecCCCcc----hhhhhhhc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLVLHSQDPT----AEYILNCK 98 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv~~d~Dps----l~d~~g~~ 98 (449)
++.+.|..|+||||++..++..+++. |.+++.| |+..+ ....+|.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyI--d~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFY--DSEFGITPAYLRSMGVD 81 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEE--ESSCCCCHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE--eccchhhHHHHHHhCCC
Confidence 78899999999999999999999887 8999999 76554 33445543
No 136
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.32 E-value=0.033 Score=50.21 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..+++|+++|..|+||||+|..+|..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999988654
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.31 E-value=0.033 Score=48.07 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
.+|+++|..|+||||+|..+ .+.|..++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 47889999999999999988 56687754
No 138
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.30 E-value=0.041 Score=52.89 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=34.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
-.++.+.|..|+||||++..+|..++.. |.+|+.+ +.+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~--~~e~ 74 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA--MLEE 74 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE--ESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE--eCcC
Confidence 5799999999999999999999999876 8899999 5443
No 139
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=94.29 E-value=0.071 Score=54.99 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=44.1
Q ss_pred cEEEEEeCC----CCCcHHHHHHHHHHHHHHcCCceEEEecCCCcchhhhhhhcc
Q 013114 49 TTLITFLGK----GGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI 99 (449)
Q Consensus 49 ~rii~~~GK----GGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~~~ 99 (449)
-++|++++- -|.||||++..|+.+|.+.|+++.+. =-.||++-.||++-
T Consensus 43 GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~--lRePSlGP~FGiKG 95 (543)
T 3do6_A 43 GKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT--LREPSLGPTLGLKG 95 (543)
T ss_dssp CEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCHHHHHHSCC
T ss_pred CeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE--EecCCCCCcCCccc
Confidence 588888883 49999999999999999999999988 67899999999984
No 140
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.24 E-value=0.035 Score=54.56 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA------GLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~------G~rvLLv~~d~Dp 89 (449)
+...++.+.|..|+||||++.++|..++.. |.+|+.+ |+..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi--~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI--DTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE--ESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEE--ECCC
Confidence 456899999999999999999999987665 7899999 6554
No 141
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.17 E-value=0.069 Score=49.69 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|.+++|.-|.||||.+..+|..+..+|+||+++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999999999999999999999
No 142
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.15 E-value=0.024 Score=50.30 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.+|+++|..|+||||+|..+|..+ |.. ++ |.|-
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l---g~~--~i--d~D~ 35 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL---GVG--LL--DTDV 35 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH---TCC--EE--EHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCC--EE--eCch
Confidence 4568899999999999999998765 544 45 6554
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.15 E-value=0.034 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.286 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|+++++.|..|+||||+|..+|..+
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcC
Confidence 4789999999999999999998765
No 144
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.12 E-value=0.056 Score=53.64 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dp 89 (449)
-+...++.+.|..|+||||++.++|...+. .|.+|+.+ |++.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi--~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI--DTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE--ESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE--ECCC
Confidence 345789999999999999999999988665 58899999 6654
No 145
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.12 E-value=0.22 Score=59.30 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
+...++++.|..|+||||+|.++|..+++.|.+|+.+ |+..+.
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi--S~Ees~ 772 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI--DAEHAL 772 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--CTTSCC
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE--eccchH
Confidence 4568999999999999999999999999999999999 877653
No 146
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.08 E-value=0.037 Score=59.04 Aligned_cols=40 Identities=25% Similarity=0.151 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CceEEEecCCC
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAG-LSTCLVLHSQD 88 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G-~rvLLv~~d~D 88 (449)
+...+|+++|-.|+||||+|.+++..+..+| +++.++ |.|
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l--D~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL--LGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE--EHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE--CcH
Confidence 4457899999999999999999999999888 888888 654
No 147
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.04 E-value=0.031 Score=50.02 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|++++.+.|..|+||||++..++-.+...|+++-.|
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 467888999999999999999999999999888777
No 148
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.03 E-value=0.016 Score=52.63 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++|++.|..|+||||++..++..+...|.+|.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3788999999999999999999998889888877
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.99 E-value=0.049 Score=50.75 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 41 GTDENDKSTTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 41 ~~~~~~~~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..+...+.++||++.|..|+||||.|..+|..+
T Consensus 21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccchhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344455667999999999999999999998765
No 150
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.99 E-value=0.037 Score=50.02 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=24.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
++++++.|..|+||||++..+|..+ |...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l---~~~~ 53 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL---NVPF 53 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc---CCCE
Confidence 5788999999999999999999777 5544
No 151
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.97 E-value=0.042 Score=53.20 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
++.+++++|..|+||||+|..++..+ +.....| |.|
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~I--s~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVI--DND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEE--CTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEE--ech
Confidence 46899999999999999999997654 2245666 765
No 152
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.94 E-value=0.065 Score=49.61 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+|++.|--|+||||.+..++.++...|++|.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 47899999999999999999999999999999765
No 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.89 E-value=0.039 Score=48.19 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=26.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
-|.+++++|-.|+||||+|..+|..+ |..+ + |+|-
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~~--i--d~D~ 40 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLEV--L--DTDM 40 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCCE--E--EHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCCE--E--EChH
Confidence 47899999999999999999888665 5554 4 6553
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.047 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+|++.|..|+||||+|..+|..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999988765
No 155
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.70 E-value=0.056 Score=57.60 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++++++|-.|+||||++.+++..+.+.|++|+++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 47899999999999999999999999999999988
No 156
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.66 E-value=0.06 Score=50.39 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv 83 (449)
...+|++.|--|+||||++..++..+.. .|++|.++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~ 56 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVL 56 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEe
Confidence 4689999999999999999999999999 99999884
No 157
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.63 E-value=0.033 Score=48.65 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
|+.++.++|..|+||||++..+|..+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999888664
No 158
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.52 E-value=0.048 Score=48.48 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+++|+++|..|+||||+|..+|..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998766
No 159
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.52 E-value=0.05 Score=54.19 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+++++++|..|+||||+|..+|..+. +.+| |+|-
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~-----~~ii--s~Ds 40 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN-----GEII--SGDS 40 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-----EEEE--ECCS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC-----Ccee--cccc
Confidence 357999999999999999999987663 5677 6664
No 160
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.49 E-value=0.058 Score=52.18 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=28.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++.+++.|..|+|||++|.++|..+ |..++-+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v 67 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM---GINPIMM 67 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 5788888999999999999999877 7788777
No 161
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.47 E-value=0.088 Score=50.64 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=27.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.+.+|.++|..|+||||+|..+| . .|..+ + |+|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~---lg~~~--i--d~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-N---LGAYI--I--DSDH 107 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-H---HTCEE--E--EHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-H---CCCcE--E--ehhH
Confidence 3457899999999999999999998 3 47654 5 6653
No 162
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.46 E-value=0.061 Score=48.46 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
+.+|+++|..|+||||+|..+|..+ |..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~ 48 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIPQ 48 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCcE
Confidence 4688999999999999999998776 5553
No 163
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=93.45 E-value=1.5 Score=45.94 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=35.4
Q ss_pred cEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++.||+|| -.|.||-.+|++++..|..+|+||-.+ -.||
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~--k~dp 43 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAV--KIDP 43 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEE--EEEC
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEE--ecCc
Confidence 68889988 379999999999999999999999998 7777
No 164
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.44 E-value=0.049 Score=51.40 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
++.+++++|..|+||||+|..++..+ |..+.++ |.|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~--~~D~ 67 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVII--DGDS 67 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEE--CGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEE--ecHH
Confidence 45899999999999999999998765 3345667 7664
No 165
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.41 E-value=0.048 Score=48.93 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|++.|-.|+||||++..+|..+ .|.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEE
Confidence 3688999999999999999998776 46777766
No 166
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.40 E-value=0.11 Score=48.99 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVL 84 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~ 84 (449)
.+.+|.+++|.-|.||||.+...+..+..+|+||+++.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999999999999999999999993
No 167
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.39 E-value=0.24 Score=58.95 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=39.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
-+..+++++.|..|+||||+|.++|...++.|.+|+.+ |+..+.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyi--s~E~s~ 423 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI--DAEHAL 423 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--CTTSCC
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEE--EccCch
Confidence 34578999999999999999999999999999999999 877653
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.37 E-value=0.041 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+++|+++|..|+||||+|..+|..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998776
No 169
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.36 E-value=0.089 Score=47.86 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=33.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
...++.+.|..|+||||++..++-.+...|.++..| ..|.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v--~~d~ 60 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV--PMDG 60 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE--ESGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE--ecCC
Confidence 358999999999999999999999888768778888 5554
No 170
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.67 Score=38.56 Aligned_cols=71 Identities=4% Similarity=0.125 Sum_probs=61.0
Q ss_pred CCcceEEecC--ceEEEEEcCCCC--CCceEEEeecCCCeEEEEECCeeeeecCCccccc-CccceEEe--CCEEEEEcC
Q 013114 377 LMSSVKFDAA--KKSVTLLMPGFD--KSEIKLYQYRGGSELLVEAGDQRRVIHLPPQIQG-KVGGARFI--ERNLIVTMG 449 (449)
Q Consensus 377 ~~~~~~i~~~--~y~l~l~LP~~~--~~~l~l~~~~~gdeL~I~~g~~rR~i~LP~~L~~-~~~~A~~~--~g~L~I~f~ 449 (449)
..|-++++++ -..++|.+|.+. ..++++... |+++....-.|==...||..+.. .-..|+|+ +|.++|++|
T Consensus 16 iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd--~~~F~F~~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 16 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQ--ENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVA 93 (115)
T ss_dssp BCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEE--TTEEEEEETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEE
T ss_pred eCCcEEEEECCCEEEEEEEcCceecccCccEEEEe--CCEEEEecCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEc
Confidence 3588888885 456899999987 778999986 99999999999999999999976 57888887 799999875
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.26 E-value=0.29 Score=59.01 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
+..+++.+.|..|+||||+|.++|..+++.|.+|+.+ |+..+.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyi--s~E~s~ 423 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI--DAEHAL 423 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--CTTSCC
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE--EcCCCH
Confidence 4568999999999999999999999999999999999 877653
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.14 E-value=0.054 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+++|+++|..|+||||++..+|..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998766
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.12 E-value=0.077 Score=51.62 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...+++.|..|+||||++.++|..+...|.+++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i 71 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35678899999999999999999998889999888
No 174
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.08 E-value=0.064 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+|++.|..|+||||+|..+|..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999998766
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.07 E-value=0.068 Score=52.77 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--------CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA--------GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~--------G~rvLLv 83 (449)
.+.+++.|.+|+||||++.+++..+.+. +..++-+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 4689999999999999999999998776 7788777
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.05 E-value=0.061 Score=48.58 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=26.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
||.++.++|..|+||||++..+|. .|..+ + |+|
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~----lg~~~--i--d~d 33 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTD----LGVPL--V--DAD 33 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHT----TTCCE--E--EHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH----CCCcc--c--chH
Confidence 467899999999999999988875 47554 4 655
No 177
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.03 E-value=0.034 Score=49.01 Aligned_cols=30 Identities=27% Similarity=0.172 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
+.+|+++|-.|+||||+|..+|..+ |..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 5689999999999999999887554 55543
No 178
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=93.03 E-value=1.9 Score=41.08 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=35.7
Q ss_pred CCcEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+|+.||++| -.|.||-.+|++++..|..+|+||-.+ -.||
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~--KiDP 63 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSI--KIDP 63 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECC--EEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEE--ecCC
Confidence 3478888887 379999999999999999999999988 6666
No 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.00 E-value=0.076 Score=46.90 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..+++++|..|+||||+|..+|..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998765
No 180
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.98 E-value=0.088 Score=51.12 Aligned_cols=39 Identities=28% Similarity=0.269 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC--C-ceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG--L-STCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G--~-rvLLv~~d~Dp 89 (449)
..++.++|..|+||||+|..++..+...| . .+.+| +.|.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv--~~D~ 72 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYA--SIDD 72 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEE--EGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEe--cccc
Confidence 57899999999999999999999998765 3 34555 4554
No 181
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.97 E-value=0.12 Score=51.30 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=35.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++.+.|..|+||||+--+++-.+...|.++.++ ..||+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~--~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL--AVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE--eecCC
Confidence 57888999999999999999999988889999999 78885
No 182
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.96 E-value=0.11 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.++.++|..|+||||++..++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998765
No 183
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.94 E-value=0.1 Score=56.15 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-+.++.|..|+|||++.+++...+.++|.+||++
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~ 239 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 239 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3889999999999999999999999999999998
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.91 E-value=0.058 Score=49.64 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dp 89 (449)
...++.+.|..|+||||++..+|...+. .+.+++.+ +...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i--~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI--DTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE--ESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEE--ECCC
Confidence 3579999999999999999999986543 36789888 6543
No 185
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.88 E-value=0.11 Score=49.03 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCc-eEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLS-TCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~r-vLLv 83 (449)
..+|++.|-.|+||||.+..++..+...|.+ +.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3789999999999999999999999999999 4443
No 186
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.87 E-value=0.079 Score=55.67 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=33.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-c-CCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-A-GLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-~-G~rvLLv~~d~Dp 89 (449)
..+|+++|-.|+||||+|.++|..|.. + |+.+-++ |.|-
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~l--DgD~ 435 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIF--EHNN 435 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEEC--CCTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEe--cCCC
Confidence 478999999999999999999999987 6 4666777 8775
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.87 E-value=0.037 Score=47.52 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=26.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++.|..|+|||++|.+++....+.+...+ +
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~ 57 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-Y 57 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-E
Confidence 688999999999999999887777777776 6
No 188
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.85 E-value=0.055 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+.+|++.|..|+||||+|..+|..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999998776
No 189
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.85 E-value=0.09 Score=49.24 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc----CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA----GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~----G~rvLLv 83 (449)
..+|+|.|--|+||||.+..++..+... |++|.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 4689999999999999999999999988 9999755
No 190
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.81 E-value=0.083 Score=47.18 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.+|.++|..|+||||+|..+|.. |..+ + |+|.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g~~~--i--d~d~ 40 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----GYPV--L--DLDA 40 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----TCCE--E--EHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----CCEE--E--cccH
Confidence 4678999999999999999888764 6554 4 6664
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.79 E-value=0.066 Score=48.17 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQ 71 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~ 71 (449)
|.++.++|..|+||||++..+|.
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH
Confidence 35788999999999999998886
No 192
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.75 E-value=0.058 Score=48.16 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++.|..|+||||++.+++..+...+.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 88999999999999999999887766554334
No 193
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.73 E-value=0.062 Score=53.16 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|+++++++|..|+||||+|..+|..+ | ..++ |.|-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l---~--~~ii--s~Ds 38 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL---P--CELI--SVDS 38 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS---C--EEEE--EECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---C--CcEE--eccc
Confidence 56799999999999999999998754 3 4566 6553
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.73 E-value=0.11 Score=49.58 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
.-.++.+.|..|+||||++..+|..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3589999999999999999999987764
No 195
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.72 E-value=0.12 Score=50.93 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=29.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++++++|..|+||||+|..+|..+ ..-+| +.|-
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~ii--s~Ds 43 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKIL-----PVELI--SVDS 43 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEE--ECCT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEE--eccc
Confidence 3457899999999999999999998764 34567 6654
No 196
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.68 E-value=0.093 Score=46.51 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..++.+.|..|+||||++..+|-. .+...+.+ |.|.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i--~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL---PGVPKVHF--HSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEE--CTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEE--cccc
Confidence 478999999999999999988754 34445556 6653
No 197
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.65 E-value=0.12 Score=48.26 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+..++++.|-.|+||||++..++..+.. |..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4578999999999999999999999988 8888654
No 198
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.61 E-value=0.14 Score=48.97 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGL 78 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~ 78 (449)
..-+++.|..|+|||++|.++|..+...|.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456889999999999999999999988765
No 199
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.52 E-value=0.076 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQ 71 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~ 71 (449)
..+++.+.|.||+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 369999999999999999998875
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.49 E-value=0.11 Score=51.39 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH--cCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM--AGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~--~G~rvLLv~~d~Dp 89 (449)
.+.|+.+.|..|+||||++..++..+.. .+.+|.++ +.|.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i--~~D~ 132 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI--TTDG 132 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE--EGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE--eecc
Confidence 4679999999999999999999888764 35678888 5554
No 201
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.40 E-value=0.11 Score=49.75 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...+++.|..|+||||+|.++|..+...+..+..+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 46889999999999999999999998777777777
No 202
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.38 E-value=0.13 Score=52.95 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCC-ceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGL-STCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~-rvLLv 83 (449)
..+++.|..|+||||++.+++.++.+.|. +++++
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 38899999999999999999999999987 67776
No 203
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.36 E-value=0.14 Score=47.29 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCC-ceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGL-STCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~-rvLLv 83 (449)
++|+|.|--|+||||.+..++.++...|+ .|.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 68999999999999999999999999998 55443
No 204
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.33 E-value=0.095 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..|++.|..|+||||+|..+|..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457778999999999999999877
No 205
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.33 E-value=0.094 Score=46.72 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
+.+++++|..|+||||++..+|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999999988865
No 206
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.27 E-value=0.065 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+|++.|..|+||||+|..+|..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5788999999999999999988754
No 207
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.20 E-value=0.17 Score=46.09 Aligned_cols=33 Identities=39% Similarity=0.459 Sum_probs=30.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|+|-|-=|+||||.+..++.+|.++|++|++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 467789899999999999999999999999876
No 208
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.16 E-value=0.1 Score=51.22 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA------GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~------G~rvLLv 83 (449)
.+.+++.|..|+||||++.+++..+... +..++-+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 4678999999999999999999988765 6666666
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.12 E-value=0.094 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQ 71 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~ 71 (449)
..++.+.|..|+||||++..+|.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999999999974
No 210
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.12 E-value=0.11 Score=48.25 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+..|++.|..|+||||+|..+|..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578889999999999999999876
No 211
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.09 E-value=0.13 Score=46.26 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..++.++|..|+||||++..+|..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999998776
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.07 E-value=0.15 Score=46.93 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-HcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA-~~G~rvLLv~~d~Dp 89 (449)
+.-.++.+.|..|+||||++..++.... ..|..++.+ +.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~--~~~~ 69 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV--TLEE 69 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE--ESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE--EccC
Confidence 3468999999999999999999997666 678888888 5543
No 213
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.04 E-value=0.043 Score=54.37 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+++++.|..|+||||+|.++|.. .|.+|+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyI 154 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYA 154 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEE
Confidence 3577899999999999999999876 68898888
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.99 E-value=0.062 Score=48.65 Aligned_cols=35 Identities=37% Similarity=0.404 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.++.++|..|+||||++..++..+. .+.++ +.|+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i--~~D~ 55 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVI--SQDD 55 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEE--EGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEE--eCCc
Confidence 57899999999999999988775431 56777 7775
No 215
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.97 E-value=0.16 Score=46.59 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
|.+.|+|=|--|+||||.+..++.+|. +|++|++.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 457899999999999999999999996 58998876
No 216
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.96 E-value=0.11 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
+|+++|..|+||||+|..+|..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999988766
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.94 E-value=0.074 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.++++++|..|+||||++..++..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999988765
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.75 E-value=0.11 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.++.++|..|+||||+|..+|..+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998765
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.58 E-value=0.15 Score=50.00 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc---CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA---GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~---G~rvLLv 83 (449)
.+.+++.|..|+||||++.+++..+... +..++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4678999999999999999999888776 7778777
No 220
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.56 E-value=0.11 Score=49.68 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=27.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
|++++++.|-.|+||||+|..++..+ .| ...+ |.|
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~--~~--~~~i--~~D 35 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKN--PG--FYNI--NRD 35 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS--TT--EEEE--CHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhC--CC--cEEe--ccc
Confidence 45799999999999999999887632 23 4556 766
No 221
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.44 E-value=0.15 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+|+++|..|+||||+|..++..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678889999999999999998765
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.42 E-value=0.14 Score=46.26 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=29.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++.++|..|+||||++..++-.+.. ++.++ +.|+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v--~~d~~ 42 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALL--PMDHY 42 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEE--EGGGC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEE--ecCcc
Confidence 578999999999999999998876632 57788 66653
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.38 E-value=0.12 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.++++++|..|+||||++..++..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5799999999999999999887554
No 224
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.37 E-value=0.15 Score=54.57 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH----cCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM----AGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~----~G~rvLLv 83 (449)
.++++++|..|+||||+.+.+...+.+ .|.+++++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 479999999999999999999888874 47788887
No 225
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.33 E-value=0.13 Score=46.16 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
+.+++.|..|+||||++.+++..+...+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 5889999999999999999998776543
No 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.22 E-value=0.23 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+||||+|.++|..+ |...+.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~ 70 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAM 70 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEe
Confidence 4668899999999999999998765 5666666
No 227
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.22 E-value=0.15 Score=50.34 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.++++++|..|+||||+|..+|..+ ..-+| ++|-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~ii--s~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVI--SGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEE--ECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----cccee--ecCc
Confidence 4689999999999999999998665 34567 6664
No 228
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.14 E-value=0.15 Score=49.55 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH--HcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA--MAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA--~~G~rvLLv~~d~D 88 (449)
..++.++|..|+||||++..++-.+. -.+-++.++ ++|
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi--~~d 119 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI--TTD 119 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE--EGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE--ecC
Confidence 58999999999999999999998775 334578888 555
No 229
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.14 E-value=0.15 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
+|++.|-.|+||||++..+|..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57889999999999999998776
No 230
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.13 E-value=0.13 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..+++.++|.||+||||+|..++...
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhch
Confidence 36899999999999999999887543
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.12 E-value=0.1 Score=50.91 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH------------HcC----CceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYA------------MAG----LSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA------------~~G----~rvLLv~~d~Dp 89 (449)
+...++.+.|..|+||||+|.++|...+ +.| .+|+.+ |+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi--~~e~ 152 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYI--DTEG 152 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEE--ESSS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEE--ECCC
Confidence 4568999999999999999999998753 235 789999 6543
No 232
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.02 E-value=0.15 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
.|+++|..|+||||+|..+|..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999998765
No 233
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.02 E-value=0.13 Score=46.81 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=26.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..+|.++|.-|+||||+|..+|..+ |..+ + |+|-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g~~v--i--d~D~ 45 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---GAHV--V--NVDR 45 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---CCEE--E--EHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCEE--E--ECcH
Confidence 5688899999999999998888653 6554 5 7764
No 234
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.01 E-value=0.18 Score=49.70 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
+.+++.|..|+||||++.+++..+... +..++-+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 488999999999999999999888776 6788877
No 235
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.97 E-value=0.17 Score=52.01 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv 83 (449)
..-+++.|..|+||||++.++|..+... |.+++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4568899999999999999999999876 8888887
No 236
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.92 E-value=0.2 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
+|++.|..|+||||+|..+|..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998776
No 237
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.77 E-value=0.11 Score=48.96 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||++|.+++..+.+.+...+.+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 3467899999999999999998877667777777
No 238
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.76 E-value=0.2 Score=45.62 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvL 81 (449)
|++.|..|+||||+|..+|..+ |..++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~i 29 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQI 29 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 6788999999999999998876 65543
No 239
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.73 E-value=0.14 Score=50.88 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++.|..|+||||+|..+|..+ ..-+| |+|-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiI--s~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVI--NSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEE--ECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-----CCcEE--cccc
Confidence 3699999999999999999988654 34567 7775
No 240
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.62 E-value=0.28 Score=48.49 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
..++.+.|..|+||||+-..++-.+...|.++.++ +.||+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~--~~d~~ 94 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL--AVDPS 94 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE--EECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE--EEcCc
Confidence 57899999999999999999998888888899999 66764
No 241
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.56 E-value=0.14 Score=47.39 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..+-+++.|..|+||||.|.++|..+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999887
No 242
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.55 E-value=0.19 Score=45.74 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.++.++|..|+||||++..+|..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999888654
No 243
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.54 E-value=0.19 Score=51.98 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+..+|++.|-.|+||||++..+|..+...+.++..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~ 73 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 73 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 3467889999999999999999999998888888777
No 244
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.52 E-value=0.2 Score=46.21 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++.||.++||.|+||+|+|..+...+-.. ++.++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv 43 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVL 43 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEE
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEE
Confidence 47999999999999999998776544211 35555
No 245
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.48 E-value=0.22 Score=47.07 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+-+++.|..|+|||++|.++|.. .|...+.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH---hCCCEEEE
Confidence 3678899999999999999999886 35665555
No 246
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.45 E-value=0.23 Score=51.92 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+.++++|..|+||||+|.++|..+ |..++-+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 35789999999999999999998876 7888877
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.39 E-value=0.17 Score=44.94 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++.+.|..|+||||++..++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999987654
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.29 E-value=0.27 Score=44.64 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
..+|.++|.-|+||||++..+|. .|..+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~~~ 31 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGINV 31 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 46899999999999999988874 56543
No 249
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.26 E-value=0.19 Score=49.97 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=29.2
Q ss_pred cEEEEE--eCCCCCcHHHHHHHHHHHHHHc------CCceEEE
Q 013114 49 TTLITF--LGKGGSGKTTSAVFAAQHYAMA------GLSTCLV 83 (449)
Q Consensus 49 ~rii~~--~GKGGVGKTTvAaalA~~lA~~------G~rvLLv 83 (449)
.+.+++ .|.+|+||||++.+++..+... +..++-+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 467788 9999999999999999888764 6677777
No 250
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.12 E-value=0.23 Score=47.29 Aligned_cols=31 Identities=29% Similarity=0.201 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||++|.++|..+ +...+.+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i 81 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKV 81 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 456788999999999999999877 5666666
No 251
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.04 E-value=0.46 Score=43.43 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|.+|.++.|.-|.||||--...+.....+|+||+++....|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~ 60 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT 60 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCc
Confidence 468999999999999998888888888899999999544444
No 252
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.03 E-value=0.16 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
|+++|..|+||||+|..+|..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999987554
No 253
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.77 E-value=0.22 Score=46.41 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.++++.|..|+||||++..+|..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998776
No 254
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.70 E-value=0.21 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..++.+.|..|+||||++..++-.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999887655
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.57 E-value=0.16 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQ 71 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~ 71 (449)
|.|+++|+.|+||||+...+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6689999999999999877643
No 256
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.45 E-value=0.25 Score=45.43 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
+|++.|..|+||+|.|..+|..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45677999999999999998765
No 257
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.41 E-value=0.29 Score=45.66 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-----CCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-----GLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-----G~rvLLv~~d~D 88 (449)
..++.++|..|+||||++..++-.+-.. ..++.++ +.|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v--~~d 67 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVIL--SQD 67 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEE--EGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEE--eCC
Confidence 4789999999999999999998766211 2356667 555
No 258
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.33 E-value=0.36 Score=51.74 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv 83 (449)
..+.++.|..|+||||+.+.++..+.+ .|.+||++
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999988887 68899988
No 259
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.13 E-value=0.24 Score=46.82 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=25.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+||||+|.++|..+ |....-+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEE
Confidence 4568888999999999999997654 5566655
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.07 E-value=0.25 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..++.+.|..|+||||++..++-.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999887654
No 261
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.04 E-value=0.38 Score=47.08 Aligned_cols=41 Identities=24% Similarity=0.136 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-C-CceEEEecCCCcc
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-G-LSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-G-~rvLLv~~d~Dps 90 (449)
...++.+.|..|+||||++..++-.+... | .++.+| ..|+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v--~qd~~ 131 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLV--TTDGF 131 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEE--EGGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEE--ecCcc
Confidence 36899999999999999999999888653 5 578888 55653
No 262
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.75 E-value=0.23 Score=50.57 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+++++++|-.|+||||+|..++..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999887543
No 263
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.75 E-value=0.53 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+-+++.|..|+||||+|.++|..+ +...+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~---~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 447899999999999999998765 4555555
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.34 E-value=0.27 Score=45.29 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=25.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+.++++|..|+||||+|..+| ++|. -+| +.|-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La----~~g~--~iI--sdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV----QRGH--RLI--ADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH----TTTC--EEE--ESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHH----HhCC--eEE--ecch
Confidence 4789999999999999887665 6666 345 5554
No 265
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.28 E-value=0.76 Score=44.02 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=26.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+.+++.|..|+||||+|.++|..+ |.....+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~ 69 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVT 69 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 567889999999999999998766 5677767
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.24 E-value=0.23 Score=44.23 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
+++.++|..|+||||+...++-.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6789999999999999999887664
No 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.12 E-value=0.57 Score=53.42 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH--HHH-cCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH--YAM-AGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~--lA~-~G~rvLLv~~d~Dp 89 (449)
.+++.+.|.||+||||+|..++.. ... -...++.++.+.++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~ 193 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC
Confidence 589999999999999999998853 233 35567777555544
No 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.88 E-value=0.29 Score=46.58 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=25.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+||||+|.++|..+ +....-+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i 85 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNI 85 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEe
Confidence 4678899999999999999998755 4555545
No 269
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.88 E-value=0.34 Score=48.10 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..-+++.|..|+||||+|.++|..+ |.....+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEe
Confidence 3567899999999999999999776 6666655
No 270
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.83 E-value=0.37 Score=47.26 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.+.+++.|..|+|||++|.++|..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47889999999999999999998875
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.65 E-value=0.36 Score=43.70 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv 83 (449)
.-.++.+.|..|+||||++..++..+.. .+.+++.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~ 65 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI 65 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEE
Confidence 3589999999999999999999876554 24567777
No 272
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.52 E-value=0.31 Score=46.98 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=25.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.+++.|..|+||||+|.++|..+ +...+-+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v 80 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISI 80 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEE
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEE
Confidence 4678899999999999999998765 4555545
No 273
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.51 E-value=0.49 Score=46.20 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ .+...+.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i 77 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSI 77 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEE
Confidence 4778888999999999999999776 35555555
No 274
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.40 E-value=0.42 Score=44.16 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
....++.++|..|+||||++..+|..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345688999999999999999888654
No 275
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.36 E-value=0.32 Score=50.25 Aligned_cols=33 Identities=24% Similarity=0.160 Sum_probs=26.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-------cCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAM-------AGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~-------~G~rvLLv 83 (449)
-+++.|..|||||++|-++|..+.. .|.+++-+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4578899999999999999999876 35555544
No 276
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.34 E-value=0.46 Score=52.60 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv 83 (449)
..+.++.|..|+||||+.+.++..+.+ .|.++|++
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 357899999999999999999988887 68899887
No 277
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.33 E-value=0.48 Score=42.70 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLS 79 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~r 79 (449)
+-++++|..|+||||+|.++.. +|.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence 6789999999999999987764 6865
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.31 E-value=0.36 Score=44.12 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
.++++++|..|+||||+...++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 478999999999999999988754
No 279
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.30 E-value=0.82 Score=42.51 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~ 85 (449)
-.|.+++|.=|.||||.....+..+..+|++|+++..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 4799999999999999999999999999999998843
No 280
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.26 E-value=0.63 Score=46.49 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=32.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
-+++.|..|.||||+...++..+...|.+++++ |.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~~~ 74 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPERE 74 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESSCC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCCcC
Confidence 457889999999999999999888899999999 66543
No 281
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.14 E-value=0.33 Score=55.21 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHH----cCCceEEEecCC
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAM----AGLSTCLVLHSQ 87 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~----~G~rvLLv~~d~ 87 (449)
..+++.+.|.||+||||+|...+..... -...++.++.+.
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 3689999999999999999888766432 234566664333
No 282
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.99 E-value=0.44 Score=43.64 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=17.1
Q ss_pred CcceeeeccCCCCCCCCCCCcEEEEEeCCCCCcHHHHHHHH
Q 013114 29 RPRAMPISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~rii~~~GKGGVGKTTvAaal 69 (449)
...|+..++-+..........-=+++.|.+||||||+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~kVvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 17 NLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp ------------------CCEEEEEEECCTTSSHHHHHHHH
T ss_pred CccccccccCCCcccccCCCceEEEEECCCCCCHHHHHHHH
Confidence 45555555544443333333344677899999999987654
No 283
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.99 E-value=0.43 Score=44.81 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.++.+.|..|+||||+|..+|..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999998766
No 284
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.98 E-value=0.41 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.++++++|..|+||||+|..+|..+-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 47899999999999999999998773
No 285
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.93 E-value=0.49 Score=46.00 Aligned_cols=32 Identities=28% Similarity=0.224 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ |....-+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEE
Confidence 5678889999999999999998764 5566555
No 286
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.86 E-value=0.39 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
...+++.|+.|+||||++-++|..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3568899999999999999999876
No 287
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.67 E-value=0.41 Score=46.74 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++.+++++|..|+||||+--.++-.. .|+|+.++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi 36 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVI 36 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEE
Confidence 46899999999999999988776542 79999999
No 288
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.64 E-value=0.43 Score=50.54 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC-CceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG-LSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G-~rvLLv~~d~Dp 89 (449)
..++.++|..|+||||++.++|..+...+ .++.++ |.|.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~l--DgD~ 408 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLL--DGDI 408 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEE--SSHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEE--CCcH
Confidence 47899999999999999999999987654 567677 7764
No 289
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.64 E-value=0.45 Score=47.10 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ |..++.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEE
Confidence 5678889999999999999998654 6676666
No 290
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.62 E-value=0.39 Score=46.36 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+++++|..|+||||++.++|..+ |.+++-+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 4789999999999999999998665 6777777
No 291
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=86.47 E-value=0.99 Score=43.06 Aligned_cols=41 Identities=7% Similarity=-0.021 Sum_probs=34.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.-++++++|-.|.||||+|..++...+++|.+++++ ..+-
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~--~~~e 59 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMF--SISY 59 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEE--ECSS
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEE--EEeC
Confidence 4568888887667777799999999999999999999 5553
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.46 E-value=0.87 Score=43.22 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
..++.++|..|+||||+...++-.+... .-++.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 5899999999999999999998887654 4466655
No 293
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.43 E-value=0.28 Score=47.67 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||++|.+++....+.+...+.+
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v 59 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTL 59 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEE
Confidence 3467899999999999999998777777777777
No 294
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.32 E-value=0.71 Score=48.29 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..-.++.+.|..|+||||++..+|..++..|.+++.+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999999888889988777
No 295
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.27 E-value=0.53 Score=46.46 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=25.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ |...+-+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEe
Confidence 4567889999999999999999776 5565555
No 296
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.21 E-value=0.4 Score=48.66 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH------cCCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAM------AGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~------~G~rvLLv~~d~Dp 89 (449)
+...++.+.|..|+||||++..+|...+. .|.+++.+ |+..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyi--d~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI--DTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE--ESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEE--eCCC
Confidence 44689999999999999999988877654 35788888 6543
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.15 E-value=0.55 Score=48.14 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.+-+++.|..|+|||++|.++|..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 35678899999999999999998863
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.11 E-value=0.53 Score=42.48 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
++.+.|..|+||||+...+|-.+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 578899999999999999998888667
No 299
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.05 E-value=0.43 Score=45.20 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++++.|..|+||||++..+|..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4688999999999999999998766
No 300
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.87 E-value=0.26 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
-+++.|..|+|||++|.++|..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36788999999999999998765
No 301
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.78 E-value=0.55 Score=45.88 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
...++++|..|+||||++.++|..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999999999887753
No 302
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.78 E-value=0.49 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..++.+.|..|+||||++-.+|..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988544
No 303
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.68 E-value=0.5 Score=45.13 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
+++.|..|+||||+|.++|..+...+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 88999999999999999999876543
No 304
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.58 E-value=0.5 Score=45.06 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcC--CceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAG--LSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G--~rvLLv 83 (449)
+++.|..|+||||+|.++|..+...+ ..++-+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 88999999999999999999886543 334444
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.56 E-value=0.96 Score=45.07 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=29.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
..++.++|..|+||||+..+++-.+... |.+++.+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 4699999999999999999998888775 6677655
No 306
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.56 E-value=0.8 Score=50.68 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=30.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-cCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM-AGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~-~G~rvLLv 83 (449)
..+.++.|..|+||||+.+.+...+.+ .|.++|++
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~ 410 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVC 410 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 357889999999999999999888876 69999998
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.44 E-value=0.94 Score=45.31 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv 83 (449)
...++.++|..|+||||+..+++-.+... ..+++.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 45799999999999999999999888765 4567666
No 308
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.14 E-value=0.84 Score=44.17 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc--chhhhhhh
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNC 97 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp--sl~d~~g~ 97 (449)
-+++.|..|+|||++|.++|..+ |....-+ .+.+ ..++.+|.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~---~~~~~~i--~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM---DLDFHRI--QFTPDLLPSDLIGT 91 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT---TCCEEEE--ECCTTCCHHHHHEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCeEEE--ecCCCCChhhcCCc
Confidence 46888999999999999998765 5555555 4433 23455543
No 309
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.10 E-value=0.5 Score=43.76 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.++|++.|--|+||||++..+|..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999988763
No 310
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.05 E-value=0.48 Score=44.05 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
+++.|..|+||||++.++|..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998665
No 311
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=85.04 E-value=0.59 Score=47.05 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
...|+|-|-=|+||||.+..++.++...|
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 45677778889999999999999998877
No 312
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.92 E-value=0.32 Score=47.56 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++|.|..|+||||++-++|..+...+.+..++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 78999999999999999999886554444444
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.77 E-value=0.56 Score=46.49 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHc------CCceEEEecCCCc
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMA------GLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~------G~rvLLv~~d~Dp 89 (449)
+..+++.+.|..|+||||++..+|..++.. |-+|+.+ |+..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i--~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI--DTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE--ESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEE--eCCC
Confidence 456899999999999999999999876432 3577888 6543
No 314
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.74 E-value=0.7 Score=47.34 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|=+++.|..|+|||++|.|+|..+ |...+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Confidence 5778899999999999999998765 6666666
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.72 E-value=0.54 Score=42.39 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++.+.|..|+||||+...++-.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4688999999999999999987655
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.71 E-value=0.57 Score=43.27 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++.+.|+.|+||||+.-.++-.+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 5799999999999999998887654
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.66 E-value=0.7 Score=51.36 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH-------cCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAM-------AGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~-------~G~rvLLv 83 (449)
+-+++.|..|+||||++.++|..+.. .|.+++.+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 34688999999999999999999977 47787777
No 318
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.47 E-value=0.59 Score=45.28 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=25.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH---cCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAM---AGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~---~G~rvLLv 83 (449)
+++.|..|+||||++.++|..+.. ...++.-+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEE
Confidence 789999999999999999998863 23455544
No 319
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=84.46 E-value=3.3 Score=40.82 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 44 ~~~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++..||||++++. ||-|=-+-..++|.+|.++|++|.++
T Consensus 16 ~~~~m~rIl~~~~-~~~GHv~p~l~La~~L~~~Gh~V~v~ 54 (415)
T 3rsc_A 16 EGRHMAHLLIVNV-ASHGLILPTLTVVTELVRRGHRVSYV 54 (415)
T ss_dssp ---CCCEEEEECC-SCHHHHGGGHHHHHHHHHTTCEEEEE
T ss_pred CcccCCEEEEEeC-CCccccccHHHHHHHHHHCCCEEEEE
Confidence 4456799999886 68888889999999999999999999
No 320
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.36 E-value=0.71 Score=41.13 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+.+.|+.|+||||+...++-.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998777
No 321
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.24 E-value=0.22 Score=42.49 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
+++.|..|+|||++|.+++...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 6789999999999998887543
No 322
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.13 E-value=0.69 Score=50.59 Aligned_cols=34 Identities=29% Similarity=0.204 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..++|.|..|+|||++|.++|..+...+...+-+
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 3689999999999999999999997777777777
No 323
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.00 E-value=0.69 Score=43.95 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
+++.|..|+||||+|.++|..+...+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 78999999999999999999886543
No 324
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=83.92 E-value=1 Score=43.19 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCcEEEEEeC--CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 47 KSTTLITFLG--KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 47 ~~~rii~~~G--KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
..|+.||++| -.|.||-.+|++++..|..+|+||-++ -.||
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~--K~DP 63 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSI--KIDP 63 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEE--EEEC
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceee--eccc
Confidence 4478999988 479999999999999999999999999 6676
No 325
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.89 E-value=0.87 Score=41.92 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...++.+.|.-|+||||++..++-. |.+|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 3589999999999999999887765 5677776
No 326
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.87 E-value=0.64 Score=46.02 Aligned_cols=32 Identities=28% Similarity=0.224 Sum_probs=25.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ |...+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEe
Confidence 3456777999999999999999876 5565555
No 327
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.84 E-value=0.57 Score=45.44 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.-+++.|..|+|||++|.++|.. .|.....+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~---~~~~~~~~ 86 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE---MSANIKTT 86 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH---TTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHH---hCCCeEEe
Confidence 45789999999999999998655 46666666
No 328
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.55 E-value=0.9 Score=46.47 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=26.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ .|...+-+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v 199 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSI 199 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEE
Confidence 4678888999999999999998775 35555555
No 329
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.42 E-value=0.4 Score=44.03 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=16.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH-HHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA-QHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA-~~l 73 (449)
..++.++|..|+||||++..++ -.+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999887 554
No 330
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=83.37 E-value=0.85 Score=44.59 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=24.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
...++|.|..|+||||+|.++|..+-..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4678999999999999999999888543
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.36 E-value=0.66 Score=40.63 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.+.++.|..|+||||+..+++..+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3889999999999999999988764
No 332
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.28 E-value=0.77 Score=45.10 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
...++++|+.|+|||+++-+++..+.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4677999999999999999999999753
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=83.16 E-value=0.75 Score=40.11 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=16.3
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
-+++.|.+||||||+..+++
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 35566889999999988876
No 334
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.07 E-value=0.79 Score=44.09 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++++.|..|+||||++..++..+ +.+++.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~ 61 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYL 61 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEE
Confidence 589999999999999999887664 3456777
No 335
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.04 E-value=0.57 Score=42.25 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++++|-.|+||||.|..+|.. |.+++-+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yi 29 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYI 29 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEE
Confidence 3788999999999999988754 7778777
No 336
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.98 E-value=0.76 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
+++.|..|+||||++.++|..+-.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999986643
No 337
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=82.93 E-value=0.8 Score=43.14 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
|.++.++|+-|+||||+|..++.. .|..+
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 468999999999999999777533 47664
No 338
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.92 E-value=0.93 Score=46.48 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++=+++.|..|+|||++|.|+|..+ |...+.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v 246 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NATFLKL 246 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 5778888999999999999998654 6666666
No 339
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.84 E-value=0.67 Score=43.85 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~l 73 (449)
+++.|..|+||||++.++|..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7889999999999999998765
No 340
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.46 E-value=1.3 Score=44.11 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|.. .|..++-+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEe
Confidence 467899999999999999998654 47777766
No 341
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.41 E-value=1.1 Score=49.65 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
...+++.|..|+|||++|.++|..+...+...+-+ ++.
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i--~~~ 625 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI--DMT 625 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE--CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE--ech
Confidence 35788999999999999999999998878888877 553
No 342
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.37 E-value=1 Score=46.28 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++=+++.|..|+|||++|.|+|..+ |...+.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v 246 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI---GANFIFS 246 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEE
Confidence 5778888999999999999998754 6677666
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.21 E-value=0.72 Score=43.97 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=22.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++.|..|+||||++-++|..+ +...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i 75 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISV 75 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEE
Confidence 7889999999999999998653 4445545
No 344
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.96 E-value=0.69 Score=41.81 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
.+++++|..|+||||++..+|..+ |.. ++ |+|-
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~---g~~--~~--~~d~ 36 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL---SMI--YV--DTGA 36 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCE--EE--EHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCc--ee--cCCh
Confidence 478899999999999998887544 544 44 6553
No 345
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=81.96 E-value=1 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=26.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~D 88 (449)
+.||.++|.-|+||||+|..+|..+ |... + |.|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~~--~--d~~ 46 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIHF--Y--DDD 46 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCEE--E--CHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCcE--E--cHH
Confidence 4699999999999999999998766 5554 5 744
No 346
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=81.77 E-value=1 Score=37.71 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
+-+++.|..|+||||+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 345677899999999987765
No 347
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.62 E-value=1.2 Score=45.37 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
...++.++|..|+||||+..+++-.+.....+++.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 357999999999999999999988776555567666
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.37 E-value=0.8 Score=38.32 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=15.4
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|.+|+||||+..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5667889999999977665
No 349
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.34 E-value=1 Score=41.55 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
.++|++.|--|+||||.+..++..+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998865
No 350
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.13 E-value=0.96 Score=40.78 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|..|+||||+.-.++-.+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988665
No 351
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.01 E-value=0.79 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.-+++.|..|+||||+|.++|..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999998765
No 352
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.92 E-value=0.82 Score=40.07 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaal 69 (449)
..++.+.|..|+||||++..+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999873
No 353
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=80.91 E-value=0.87 Score=41.31 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
..||.++|.-|+||||++..+|..+ |...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCE
Confidence 3589999999999999999988766 6554
No 354
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.75 E-value=0.4 Score=45.11 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
+.+|++.|--|+||||++..+|..+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999888766
No 355
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.61 E-value=0.83 Score=41.81 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++.+.|..|+||||+.-.++-.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4788999999999999999988766
No 356
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.48 E-value=1.1 Score=45.62 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=26.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++=+++.|..|+|||++|.|+|..+ |...+-+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEE
Confidence 5778889999999999999998654 5666666
No 357
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.41 E-value=1.2 Score=39.09 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=17.6
Q ss_pred CCCCCCCCCcEEEEEeCCCCCcHHHHHHHHH
Q 013114 40 AGTDENDKSTTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 40 ~~~~~~~~~~rii~~~GKGGVGKTTvAaalA 70 (449)
..++......-=+++.|..||||||+...+.
T Consensus 12 ~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp --------CEEEEEEECCTTSSHHHHHHHHH
T ss_pred hhHHhCCCceEEEEEECCCCCcHHHHHHHHH
Confidence 3333333334456778999999999987664
No 358
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.34 E-value=1.1 Score=46.36 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=26.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+|=+++.|..|+|||++|.|+|..+ |...+.+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~---~~~fi~v 274 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT---DATFIRV 274 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEE
Confidence 6778899999999999999998654 5566666
No 359
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.63 E-value=0.56 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA 74 (449)
+++.|..|+|||++|.++|..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 78899999999999999998664
No 360
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=79.63 E-value=1.1 Score=42.96 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++++++|..|+||||++..++..+ | ++.+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~ 60 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILI 60 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S--EEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C--cEEE
Confidence 688999999999999999887553 3 6666
No 361
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.61 E-value=1.3 Score=39.42 Aligned_cols=33 Identities=27% Similarity=0.183 Sum_probs=26.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHc------CCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMA------GLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~------G~rvLLv 83 (449)
-+++.+..|.|||.++...+..+... +.+++++
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil 88 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL 88 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence 36778999999999999888876543 6788887
No 362
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.07 E-value=1.2 Score=46.75 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..++++.|..|+||||+|.++|..+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999887
No 363
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=79.00 E-value=6.3 Score=40.72 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
+.+.|..|+||||++..++...+..
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhhhhc
Confidence 4556888899999999999887764
No 364
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.84 E-value=1.1 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
=+++.|..|+|||++|-++|..+..
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhc
Confidence 4688999999999999999999854
No 365
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=78.72 E-value=1.2 Score=44.73 Aligned_cols=25 Identities=32% Similarity=0.206 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+++.+.|..|+||||++.++|-.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999999653
No 366
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=78.65 E-value=1.2 Score=37.47 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.7
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|.+|+||||+..++.
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4566889999999988775
No 367
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.44 E-value=1.7 Score=43.86 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcch
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA 91 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dpsl 91 (449)
.+=+++.|..|+|||+....+...+.+.|.+++++ |.....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~--Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV--DPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE--EETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--eCCCch
Confidence 34567778899999999888888888899999998 654433
No 368
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=78.22 E-value=1.4 Score=38.38 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
..++.+.|..|.||||+.-.++-.+...|
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G 61 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQG 61 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCC
Confidence 47899999999999999999998873344
No 369
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.12 E-value=2.1 Score=46.69 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=26.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..-+++.|..|+|||++|.++|..+ |...+-+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i 519 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRF 519 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEE
Confidence 4568899999999999999999887 6666666
No 370
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=78.12 E-value=1.9 Score=40.70 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=25.7
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHcCC-ceEEE
Q 013114 53 TFLGKGGSGKTTSAVFAAQHYAMAGL-STCLV 83 (449)
Q Consensus 53 ~~~GKGGVGKTTvAaalA~~lA~~G~-rvLLv 83 (449)
++.+.-|.|||.++++++......|. ++|++
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil 163 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 55888999999999998887766655 88888
No 371
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.10 E-value=1.5 Score=45.01 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
++=+++.|..|+|||++|.|+|..+ |...+.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCCEEEE
Confidence 5778888999999999999998765 5566666
No 372
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=77.86 E-value=1.2 Score=43.53 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCce
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rv 80 (449)
+-++++|+.|+||||+|.++ .++|++.
T Consensus 148 ~gvli~G~sG~GKStlal~l----~~~G~~l 174 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDL----INKNHLF 174 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHH----HTTTCEE
T ss_pred EEEEEEcCCCCCHHHHHHHH----HHcCCEE
Confidence 77899999999999998664 4578753
No 373
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=77.71 E-value=1.5 Score=38.24 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=17.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHH
Q 013114 48 STTLITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaal 69 (449)
...-+++.|..||||||+...+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3456677899999999998765
No 374
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=77.58 E-value=1.6 Score=37.38 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..|+||||+..++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 345677899999999977665
No 375
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=77.32 E-value=2.1 Score=36.95 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+.+.|..||||||+...++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 467788999999999988775
No 376
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.29 E-value=1.7 Score=37.13 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
..+.+.|.+||||||+-..++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 457888999999999988775
No 377
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=76.94 E-value=1.8 Score=43.21 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
..+++.|..|+||||++..+|..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4577899999999999999988775
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=76.93 E-value=2.2 Score=36.66 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
..+.++.|+.|.||||+--|+...+-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 36889999999999999988887663
No 379
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=76.84 E-value=8.1 Score=37.85 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 46 ~~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..+|||++++.. |-|--.-..++|.+|.++|.+|.++
T Consensus 18 ~~~MrIl~~~~~-~~Ghv~~~~~La~~L~~~GheV~v~ 54 (398)
T 3oti_A 18 GRHMRVLFVSSP-GIGHLFPLIQLAWGFRTAGHDVLIA 54 (398)
T ss_dssp -CCCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEE
T ss_pred hhcCEEEEEcCC-CcchHhHHHHHHHHHHHCCCEEEEe
Confidence 345899999863 6677777889999999999999999
No 380
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=76.33 E-value=1.4 Score=45.37 Aligned_cols=31 Identities=29% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+-+++.|..|+||||+|.++|..+ |...+.+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v 81 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKV 81 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc---CCCceee
Confidence 457788999999999999998765 5565555
No 381
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=76.27 E-value=1.8 Score=40.07 Aligned_cols=29 Identities=31% Similarity=0.261 Sum_probs=23.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+++.+..|.|||.+|.+++..+ +.+++++
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv 139 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIV 139 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 6677888999999988877654 7788877
No 382
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=75.90 E-value=2.5 Score=46.02 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=24.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
..-+++.|..|+||||++.++|..+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 3557889999999999999999988764
No 383
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=75.72 E-value=2.5 Score=36.50 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.4
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaal 69 (449)
-+++.|..|+||||+.-++
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4556799999999998765
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.58 E-value=1.4 Score=38.44 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.0
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|.+||||||+...++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5677999999999987765
No 385
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=75.28 E-value=2.4 Score=38.33 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
..+.++.|..|+||||+--|+...+-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 468899999999999999988777754
No 386
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.14 E-value=1.8 Score=36.29 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..|+||||+..++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35667899999999977665
No 387
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.11 E-value=1.7 Score=37.80 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
..-+++.|..||||||+..++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3456778999999999987765
No 388
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=74.96 E-value=1.8 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=15.7
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+.-++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4667899999999987764
No 389
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.95 E-value=2.7 Score=43.65 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=25.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+|||++|.++|..+ |...+.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~v 269 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLI 269 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 3557889999999999999997654 6666666
No 390
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=73.08 E-value=2.8 Score=44.37 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHcC----CceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYAMAG----LSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA~~G----~rvLLv 83 (449)
+++.|-.|+||||+.++-+.++.+.+ .++|++
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~l 60 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV 60 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEE
Confidence 45667788999999999888888763 789998
No 391
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.74 E-value=2.7 Score=40.94 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
..++.+.|+.|+||||+...++-.+ .|
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~--~G 152 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL--GG 152 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH--TC
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc--Cc
Confidence 4788999999999999999999887 56
No 392
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=72.72 E-value=2.3 Score=40.67 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
..-+++.|.+|+|||++|.++|..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4578999999999999999998753
No 393
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.63 E-value=2.7 Score=43.56 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+=+++.|..|+||||+|.++|..+ |....-+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~---~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA---NVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeC
Confidence 447899999999999999998754 5565555
No 394
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=72.63 E-value=2.2 Score=36.14 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=15.5
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+.-.+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5677999999999987654
No 395
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=72.42 E-value=2.3 Score=35.88 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..|+||||+-.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 35667899999999986654
No 396
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=72.30 E-value=3.2 Score=37.51 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=17.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
..-+++.|..||||||+.-++.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4566778999999999887653
No 397
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=72.28 E-value=7.3 Score=36.55 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=27.6
Q ss_pred CcEEEEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCcc
Q 013114 48 STTLITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPT 90 (449)
Q Consensus 48 ~~rii~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dps 90 (449)
|.|.+++|| -+|.|+ ++|..|++.|.+|+++ |.|..
T Consensus 1 MnK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~--~~~~~ 37 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFI--DIDEK 37 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEE--ESCHH
T ss_pred CCCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEE--eCCHH
Confidence 346677776 457775 7788999999999999 77764
No 398
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=72.04 E-value=2.4 Score=35.71 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.6
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+-.++.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5666899999999987763
No 399
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=71.97 E-value=2.9 Score=36.90 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45677899999999986554
No 400
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=71.76 E-value=13 Score=36.18 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 47 ~~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+|||++++.. +-|=-.-..++|.+|.++|++|.++
T Consensus 14 ~~MrIl~~~~~-~~gh~~~~~~La~~L~~~GheV~v~ 49 (398)
T 4fzr_A 14 SHMRILVIAGC-SEGFVMPLVPLSWALRAAGHEVLVA 49 (398)
T ss_dssp -CCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEEcCC-CcchHHHHHHHHHHHHHCCCEEEEE
Confidence 45899988763 5666666788999999999999998
No 401
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=71.48 E-value=2.5 Score=35.28 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=15.3
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+..++.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677899999999976654
No 402
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=71.47 E-value=2.3 Score=37.46 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=17.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+.+.|..|+||||+--.++
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHh
Confidence 346788999999999987765
No 403
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=71.42 E-value=2.4 Score=35.53 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+..++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35677899999999987664
No 404
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.39 E-value=2.3 Score=37.91 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=17.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..|+||||+..++.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 446778999999999987765
No 405
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=71.37 E-value=3 Score=35.46 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
..-+++.|..||||||+...+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4456778999999999987763
No 406
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=71.36 E-value=2.4 Score=42.93 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH-HHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQ-HYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~-~lA~~G~rvLLv 83 (449)
+.+++.+..|.|||.++..-++ .+...|.+++++
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl 37 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVIL 37 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5788999999999999844333 666789999988
No 407
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=71.19 E-value=4.8 Score=39.96 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.6
Q ss_pred cEEEEEeCCC-CCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKG-GSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKG-GVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+.++++|.. ++||||++..+...+.++|+++..+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v 204 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFL 204 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEE
Confidence 4567777764 8999999999999999999999887
No 408
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=71.05 E-value=2.5 Score=35.43 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.0
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+...+.
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677999999999987764
No 409
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=71.04 E-value=2.4 Score=41.78 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
...|+|-|-=|+||||.+..++.++...|
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 35677778889999999999999998877
No 410
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=70.91 E-value=2.5 Score=35.61 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.6
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+...+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677999999999987663
No 411
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=70.91 E-value=2.9 Score=38.27 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=17.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
..-+++.|+.||||||+.-++.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHc
Confidence 3456778999999999987765
No 412
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=70.78 E-value=2.6 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.1
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..|+||||+-.++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35677999999999987764
No 413
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=70.72 E-value=5.3 Score=40.24 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|-++|- -||||++.-++..|.+.|++|.+.
T Consensus 49 ~~vI~VTGT--nGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 49 PFVFTVAGT--NGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp SEEEEEECS--SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEeCC--cChHHHHHHHHHHHHHCCCCEEEE
Confidence 578888876 489999999999999999999876
No 414
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.67 E-value=2.6 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.4
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5667899999999987664
No 415
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=70.60 E-value=2.6 Score=36.21 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=15.8
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+..++.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677899999999987764
No 416
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=70.58 E-value=2.8 Score=38.35 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=15.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
.+| ++.|-+||||||+...+.
T Consensus 14 ~Ki-vlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 14 FKL-VFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp EEE-EEECSTTSSHHHHHHHHH
T ss_pred EEE-EEECcCCcCHHHHHHHHH
Confidence 355 456899999999987653
No 417
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=70.55 E-value=2.4 Score=35.70 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.5
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4667889999999987765
No 418
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.51 E-value=2 Score=45.72 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
+.+++.|..|+||||+|.++|..+.........+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 5789999999999999999998775544344444
No 419
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=70.44 E-value=2.2 Score=36.83 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.6
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4567899999999987764
No 420
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=70.36 E-value=2.3 Score=39.19 Aligned_cols=33 Identities=39% Similarity=0.335 Sum_probs=24.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
|--+-+||-=|+||||+|..++ +.|..|+ |+|-
T Consensus 9 ~~~iglTGgigsGKStv~~~l~----~~g~~vi----daD~ 41 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFA----ARGASLV----DTDL 41 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH----HTTCEEE----EHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH----HCCCcEE----ECcH
Confidence 4567788888999999998765 4687765 6663
No 421
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=70.36 E-value=2.3 Score=35.82 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.5
Q ss_pred EEEeCCCCCcHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaal 69 (449)
+++.|..||||||+.-.+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 456788999999998665
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.31 E-value=2.6 Score=37.11 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
.-.+.+.|..|+||||+.-.++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 3567788999999999987765
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=70.31 E-value=2.6 Score=35.73 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..||||||+..++.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 445667899999999987764
No 424
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=70.23 E-value=5.9 Score=40.21 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..++|-++|-. ||||+++-++..|.+.|+||.+.
T Consensus 51 ~~~vI~VtGTN--GKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 51 APKIFTVAGTN--GKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSEEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEECCc--ChHHHHHHHHHHHHHCCCcEEEE
Confidence 45788888764 89999999999999999999987
No 425
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=70.19 E-value=3.7 Score=35.17 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=17.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
..-+++.|..||||||+..++.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3445677999999999977765
No 426
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=70.13 E-value=2.7 Score=35.75 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..|+||||+...+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 345677999999999987664
No 427
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=70.10 E-value=2.5 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=17.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
.--+++.|..||||||+-..+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3455677889999999987664
No 428
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=70.07 E-value=16 Score=37.81 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMA 76 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~ 76 (449)
.|+.+|+|.| +|||+++..+|...++.
T Consensus 154 Qr~~Ifgg~G-~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 154 GKIGLFGGAG-VGKTVLIMELINNVAKA 180 (482)
T ss_dssp CEEEEEECTT-SSHHHHHHHHHHHTTTT
T ss_pred CeeeeecCCC-CChHHHHHHHHHhhHhh
Confidence 6888888765 99999999999887654
No 429
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=70.05 E-value=2.8 Score=39.12 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.++.+.|+.|+||||+.-.++-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 688899999999999998887544
No 430
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.03 E-value=3.7 Score=42.78 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH-HHHHcCCceEEE
Q 013114 48 STTLITFLGKGGSGKTTSAVFAAQ-HYAMAGLSTCLV 83 (449)
Q Consensus 48 ~~rii~~~GKGGVGKTTvAaalA~-~lA~~G~rvLLv 83 (449)
.-.++.+.|..|+||||++..+++ .+...|..++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999653 333336667777
No 431
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=70.01 E-value=2.5 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..||||||+--++.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 446677899999999987765
No 432
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=69.95 E-value=2.6 Score=35.84 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..|+||||+.-++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35677999999999987653
No 433
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=69.72 E-value=2.8 Score=35.10 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=15.5
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+-.++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5667999999999977665
No 434
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=69.70 E-value=2.6 Score=35.52 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..|+||||+..++.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 346677899999999987763
No 435
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.57 E-value=2.2 Score=38.91 Aligned_cols=29 Identities=34% Similarity=0.324 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAG 77 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G 77 (449)
-.++.+.|..|+||||+.-.++-.-...|
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G 50 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQALQSK 50 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcCC
Confidence 46788899999999999998886633345
No 436
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=69.51 E-value=4.1 Score=41.64 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCC-ceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGL-STCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~-rvLLv 83 (449)
-.++.+.-|.|||.+++..+..+.+.|+ +||++
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl 163 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3577889999999999988888776666 88888
No 437
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=69.48 E-value=3.2 Score=36.04 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..|+||||+--++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 445677899999999987764
No 438
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.27 E-value=1.9 Score=44.95 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~l 73 (449)
=+++.|..|+|||++|.++|..+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 46788999999999999999766
No 439
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=69.23 E-value=4.9 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|-++|- .||||++.-++..|.+.|++|.+.
T Consensus 39 ~~vI~VtGT--nGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 39 GRYIHVTGT--NGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SCEEEEECS--SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECC--CChHHHHHHHHHHHHHCCCCEEEE
Confidence 467888876 489999999999999999999987
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=69.15 E-value=3.8 Score=36.39 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=15.4
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+--++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 35666999999999876553
No 441
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=69.02 E-value=2.9 Score=35.96 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+.-++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45677899999999986664
No 442
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=69.00 E-value=2.8 Score=41.03 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCc
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLS 79 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~r 79 (449)
-+-+++.|..|+||||+|.++. ++|++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~----~~g~~ 170 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELI----KRGHR 170 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH----HTTCE
T ss_pred CEEEEEEeCCCCCHHHHHHHHH----hcCCc
Confidence 3778999999999999987765 45765
No 443
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=68.79 E-value=2.5 Score=37.32 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
...+.+.|..|+||||+--.++
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4678889999999999986553
No 444
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=68.78 E-value=3.1 Score=36.81 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
-+++.|..||||||+...+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 45667889999999987663
No 445
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.75 E-value=2.5 Score=44.04 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=23.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
=+++.|..|+||||+|.++|..+ +...+.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~---~~~~i~i 95 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA---RVPFITA 95 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT---TCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 37889999999999999998664 3445555
No 446
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=68.73 E-value=3.2 Score=38.59 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|+.||||||+.-++.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 345677999999999986653
No 447
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=68.72 E-value=4.6 Score=34.29 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=16.1
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 35677999999999987764
No 448
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.72 E-value=2.7 Score=39.03 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|+.|+||||+.-.++-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4788999999999999998887544
No 449
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=68.69 E-value=6.2 Score=37.39 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=24.0
Q ss_pred EEEEEeC-CCCCcHHHHHHHHHHHHHHcCCceEEEecCCCc
Q 013114 50 TLITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89 (449)
Q Consensus 50 rii~~~G-KGGVGKTTvAaalA~~lA~~G~rvLLv~~d~Dp 89 (449)
+.++++| -||.| .++|..|+++|.+|.++ +.+.
T Consensus 48 k~vlVTGas~GIG-----~aia~~la~~G~~V~~~--~r~~ 81 (291)
T 3ijr_A 48 KNVLITGGDSGIG-----RAVSIAFAKEGANIAIA--YLDE 81 (291)
T ss_dssp CEEEEETTTSHHH-----HHHHHHHHHTTCEEEEE--ESSC
T ss_pred CEEEEeCCCcHHH-----HHHHHHHHHCCCEEEEE--eCCc
Confidence 4555555 56666 57788999999999988 5543
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=68.66 E-value=3.1 Score=38.71 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
-.++.+.|+.|+||||+.-.++-.+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 47899999999999999988875543
No 451
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=68.65 E-value=4.2 Score=35.41 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=15.5
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34566899999999986654
No 452
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=68.49 E-value=2.6 Score=41.25 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.7
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 57 KGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 57 KGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-||+|||-++..+|..+. ++++.++
T Consensus 46 vGGTGKTP~vi~L~~~L~--~~~~~il 70 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLK--DKRVCIL 70 (315)
T ss_dssp SSCCSHHHHHHHHHHHTT--TSCEEEE
T ss_pred eCCCChHHHHHHHHHHHh--hcCceEE
Confidence 699999999999999884 5677777
No 453
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=68.49 E-value=3.7 Score=40.69 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCC
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGL 78 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~ 78 (449)
..+.+++|+.|.||||+=-+++.++-.+|.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~g~~~ 52 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALFGNGI 52 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHSCCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCcc
Confidence 357889999999999998888877754443
No 454
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=68.31 E-value=2.8 Score=36.36 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=15.5
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+...+.
T Consensus 10 i~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4566899999999987765
No 455
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=68.25 E-value=2.8 Score=35.56 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.2
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+.-++.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4556899999999987665
No 456
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=68.19 E-value=3 Score=36.73 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.0
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|.+||||||+-..+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36677999999999987654
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=68.13 E-value=3.1 Score=35.44 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=16.0
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
-+++.|..||||||+..++.
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 45677999999999987653
No 458
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=68.11 E-value=8 Score=34.93 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=35.3
Q ss_pred cEEEEEeCCCCCcHHHH-HHHHHHHHHHcCCceEEEecCCCcchhhhhhh
Q 013114 49 TTLITFLGKGGSGKTTS-AVFAAQHYAMAGLSTCLVLHSQDPTAEYILNC 97 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTv-AaalA~~lA~~G~rvLLv~~d~Dpsl~d~~g~ 97 (449)
.++.+++|-||++|++. -+.++....+.|++|.++ ..|..-...++.
T Consensus 51 ~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vL--Ap~~~s~~~l~~ 98 (189)
T 2l8b_A 51 PSLAIVSGQGGAAGQRERVAELVMMAREQGREVQII--AADRRSQMNMKQ 98 (189)
T ss_dssp CCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEE--CSTTHHHHHHSC
T ss_pred CceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEE--cCchHHHHHHHh
Confidence 58999999999999988 444555556689999999 777654444443
No 459
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=68.05 E-value=4.1 Score=39.77 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAM 75 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~ 75 (449)
..+.++.|+.|.||||+--|+...+..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 478899999999999999998776653
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=67.90 E-value=3.6 Score=38.35 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
||+ -+.|..|+||||.|..+|..+
T Consensus 9 ~~~-~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRL-ILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEE-EEECCTTSCHHHHHHHHHHHH
T ss_pred cce-eeECCCCCCHHHHHHHHHHHh
Confidence 454 456888899999999998766
No 461
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=67.78 E-value=2.9 Score=36.10 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+.+.|..||||||+--.++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 346678999999999987765
No 462
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=67.73 E-value=3.2 Score=35.43 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=15.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA 70 (449)
.+| ++.|..||||||+...+.
T Consensus 9 ~ki-~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 9 IKC-VTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CEE-EEECSTTSSHHHHHHHHH
T ss_pred EEE-EEECCCCCCHHHHHHHHh
Confidence 454 556899999999986554
No 463
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=67.50 E-value=2.9 Score=35.90 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+..++.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35667899999999987764
No 464
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=67.46 E-value=2.6 Score=38.76 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
-.++.+.|+.|+||||+.-.++-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368899999999999998877643
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=67.37 E-value=3.3 Score=38.73 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
-.++.+.|+.|+||||+.-.++-.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 378899999999999999888743
No 466
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=67.14 E-value=4.4 Score=35.39 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..||||||+-.++.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 345677899999999976654
No 467
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=67.13 E-value=3.3 Score=36.20 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35667899999999987665
No 468
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=66.97 E-value=3.5 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..|+||||+.-++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 35677899999999986664
No 469
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=66.93 E-value=4.2 Score=40.28 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
-+++.+..|.|||.++...+......|.+++++
T Consensus 38 ~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil 70 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTALWLARKGKKSALV 70 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 357888999999997777777777789999988
No 470
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=66.84 E-value=4.1 Score=38.97 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc--CCceEEE
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLV 83 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~--G~rvLLv 83 (449)
+-+++.+..|.|||+++...+..+... |.+++++
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil 80 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL 80 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE
Confidence 456788999999999988877776553 7889888
No 471
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=66.78 E-value=3.4 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..||||||+..++.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 446777999999999987664
No 472
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=66.77 E-value=3.2 Score=38.53 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|+.|+||||+.-.++-.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4789999999999999988776433
No 473
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=66.70 E-value=6.6 Score=35.53 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH-------HcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYA-------MAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA-------~~G~rvLLv 83 (449)
+++.+..|.|||.++...+.... ..|.+++++
T Consensus 65 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 67788999999998776555442 347888888
No 474
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=66.63 E-value=2.4 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=25.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
..++.++|..|+||||+..+++-.+... .+.+.+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~i 208 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITI 208 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEE
Confidence 4688899999999999999987665433 334444
No 475
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=66.54 E-value=6.1 Score=40.19 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=29.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.++|-++|-. ||||++.-++..|.+.|++|.+.
T Consensus 52 ~~vI~VTGTn--GKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 52 YKTIHIGGTN--GKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SEEEEEECSS--SHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEECCc--CHHHHHHHHHHHHHHCCCCEEEE
Confidence 4788888764 99999999999999999999987
No 476
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=66.50 E-value=3.8 Score=38.78 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
-.++.+.|+.|+||||+.-.++-.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478899999999999999888753
No 477
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=66.39 E-value=3.6 Score=35.54 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.8
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..|+||||+--++.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677999999999987765
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=66.36 E-value=2.8 Score=35.85 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.4
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA 70 (449)
+++.|..||||||+...+.
T Consensus 10 i~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEECCGGGCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677899999999977664
No 479
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=66.35 E-value=3.2 Score=36.43 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=16.4
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
-+++.|..||||||+...+.
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45778999999999987665
No 480
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=66.30 E-value=3.5 Score=36.18 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35677999999999987653
No 481
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=66.12 E-value=3.3 Score=35.50 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|..||||||+..++.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 346677999999999987765
No 482
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=66.07 E-value=3.6 Score=39.83 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
...++|.|..|+||||+|.++|..+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4688999999999999999998754
No 483
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=65.99 E-value=6.2 Score=34.26 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 35677899999999986664
No 484
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=65.99 E-value=3.6 Score=35.14 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.7
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+...+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35667999999999986653
No 485
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.88 E-value=2 Score=47.42 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
.+.+++.|..|+||||+|.++|..+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999999877
No 486
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.87 E-value=3.3 Score=45.67 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA~~G~rvLLv 83 (449)
.+-+++.|..|+||||+|.++|..+ +...+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v 269 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLI 269 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEE
Confidence 4568889999999999999987543 5555555
No 487
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=65.86 E-value=2.6 Score=43.48 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHc-CCceEEEecCCCc
Q 013114 50 TLITFLGKGGSGKTTSAVFAAQHYAMA-GLSTCLVLHSQDP 89 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA~~lA~~-G~rvLLv~~d~Dp 89 (449)
.++.+.|..|+||||+.-.++-.+... |++++.+ |.|+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~v--dg~~ 177 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYI--NLDP 177 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEE--ECCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEE--cCCc
Confidence 577888999999999999998776554 5353556 6665
No 488
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=65.85 E-value=5.3 Score=34.57 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.=+++.|..||||||+..++.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 345667899999999987754
No 489
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=65.84 E-value=3.6 Score=36.52 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaalA 70 (449)
.-+++.|.+||||||+...+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 345677999999999987765
No 490
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=65.73 E-value=3.1 Score=38.37 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|+.|+||||+.-.++-.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999999998887544
No 491
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=65.70 E-value=3.4 Score=39.14 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|+.|+||||+.-.++-.+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4788999999999999998876443
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=65.70 E-value=3.1 Score=36.87 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.0
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 013114 51 LITFLGKGGSGKTTSAVFAA 70 (449)
Q Consensus 51 ii~~~GKGGVGKTTvAaalA 70 (449)
=+++.|..||||||+.-.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 46677999999999986654
No 493
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.68 E-value=3.4 Score=38.99 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQH 72 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~ 72 (449)
-.++.+.|+.|+||||+.-.++-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 378899999999999998877643
No 494
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.56 E-value=5.9 Score=34.82 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=23.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHH------HcCCceEEE
Q 013114 52 ITFLGKGGSGKTTSAVFAAQHYA------MAGLSTCLV 83 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaalA~~lA------~~G~rvLLv 83 (449)
+++.+..|.|||.++...+.... ..|.+++++
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 67788899999988666555442 246788887
No 495
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=65.49 E-value=17 Score=37.43 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHYA 74 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~lA 74 (449)
.|+.+|+| .|+|||+++..+|....
T Consensus 148 Qr~~Ifgg-~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSG-SGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEE-TTSCHHHHHHHHHHHCB
T ss_pred CEEEEecC-CCCCchHHHHHHHHHHH
Confidence 68888887 46999999988876543
No 496
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=65.45 E-value=2.9 Score=36.94 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.0
Q ss_pred EEEEEeCCCCCcHHHHHHHH
Q 013114 50 TLITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 50 rii~~~GKGGVGKTTvAaal 69 (449)
--+++.|.+||||||+...+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45677799999999997654
No 497
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.44 E-value=3.2 Score=38.55 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|+.|+||||+.-.++-.+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3788999999999999988876443
No 498
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=65.43 E-value=3.5 Score=36.06 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.2
Q ss_pred EEEeCCCCCcHHHHHHHH
Q 013114 52 ITFLGKGGSGKTTSAVFA 69 (449)
Q Consensus 52 i~~~GKGGVGKTTvAaal 69 (449)
+++.|..||||||+..++
T Consensus 29 i~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 566799999999998776
No 499
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=65.33 E-value=3.7 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
...+.+.|..|+||||++..+|-.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3667888999999999999988654
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=65.31 E-value=3.5 Score=38.92 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHH
Q 013114 49 TTLITFLGKGGSGKTTSAVFAAQHY 73 (449)
Q Consensus 49 ~rii~~~GKGGVGKTTvAaalA~~l 73 (449)
-.++.+.|+.|+||||+...++-.+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999999998887544
Done!