RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013114
(449 letters)
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 244 bits (625), Expect = 2e-77
Identities = 115/400 (28%), Positives = 182/400 (45%), Gaps = 37/400 (9%)
Query: 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNS 108
++TFLGK G +T A+ AA+ A G L+ +P +L + P
Sbjct: 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRV-LLAGLAEPVLPLLLEQTLTPDPQQIAP 60
Query: 109 NLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERL 168
NL V+ +++ + +K+ +A+ T + V G+EL VLPGMDS + A+
Sbjct: 61 NLEVVQFQSSVLLERNWEEVKKLEAQYLRTPI-IKEVYGQELVVLPGMDSALALNAIREY 119
Query: 169 VGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEKTDLGRLT 228
K+D IVYDG TLRM+G+ Y++ R + +DLG+
Sbjct: 120 D-----------ASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNSDLGKTI 168
Query: 229 APSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMNPNN 288
A S L + L S + A+ + ++ L++G ALA+P + FLV +
Sbjct: 169 AESPLI---QPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTA-D 224
Query: 289 RTSVNSALRYWGCTIQAGAQVAGAICTASPHLDEESAERVRKNFSPLPLSFLPHLPTDSS 348
V S WG Q G + G I +S + + F+PL ++ +P +
Sbjct: 225 PLEVVSVRYLWGSAQQIGLTIGGVIQVSSQTEGD-----LSAEFTPLSVTVVPDVTKG-- 277
Query: 349 LDWNTIMLNPAGKEARDLLSLQAKRSSSLMSSVKFDAAKKSVTLLMPGFDKSEIKLYQYR 408
DW ++ D L +++ + D + V L +PGFDK ++KL QY
Sbjct: 278 -DWQPLI---------DALPNFVEQAEQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQY- 326
Query: 409 GGSELLVEAGDQRRVIHLPPQIQGK-VGGARFIERNLIVT 447
G E+ VEAGDQRR I LPP + G+ + GA+F LI++
Sbjct: 327 -GPEVTVEAGDQRRNIFLPPALSGRPITGAKFQNNYLIIS 365
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 154 bits (391), Expect = 2e-43
Identities = 69/330 (20%), Positives = 120/330 (36%), Gaps = 39/330 (11%)
Query: 34 PISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA-- 91
+ E T I F GKGG GKTT + + A GL +V S DP
Sbjct: 11 SLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV--STDPAHSL 68
Query: 92 EYILNCKIGNSP--VVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEE 149
I + G+ P V NL V I+ K E LK +L + E
Sbjct: 69 RDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL-EM 127
Query: 150 LGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKAR 209
+ PG D + + + +FDV+++D TLR +G+
Sbjct: 128 AALSPGTDESAAFDVFLKYM-----------DSNEFDVVIFDTAPTGHTLRFLGMPEVMD 176
Query: 210 LYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGS 269
Y+ L + ++ +K++ + L G+ ++ + E + M + R
Sbjct: 177 KYMTKLIKLRKQMS-------GFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRAR 229
Query: 270 SALAEPHKFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI-------------CTA 316
+ L++P + LV+ P S+ + R + G + I C A
Sbjct: 230 NILSDPERTAFRLVVIP-EEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRA 288
Query: 317 SPHLDEESAERVRKNFSPLPLSFLPHLPTD 346
L + E +++ F ++++P L T+
Sbjct: 289 RRELQLKRLEMIKEKFGDKVIAYVPLLRTE 318
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 125 bits (315), Expect = 1e-32
Identities = 58/321 (18%), Positives = 112/321 (34%), Gaps = 46/321 (14%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA--EYILNCKIGNS 102
N TT + GKGG GKTT + A A +G T ++ S DP L +IG++
Sbjct: 10 NKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI--STDPAHSLSDSLEREIGHT 67
Query: 103 PVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSA 162
P NL AV I+ E L++ A + + + PG+D +
Sbjct: 68 PTKITENLYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAF 127
Query: 163 FALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEKT 222
R + +++D++++D TLR++ ++ + + +
Sbjct: 128 DQFLRYM-----------TTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQ- 175
Query: 223 DLGRLTAPSLLKLVDEALSISGRRPLLNGN-TSAEIWDAMDRM---LERGSSALAEPHKF 278
+G + P + M+ + +++P +
Sbjct: 176 -IGSMAKA-----------FKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERT 223
Query: 279 GCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI-------------CTASPHLDEESA 325
+V+ P S+ + R + G I C A L +E
Sbjct: 224 SFKMVVIP-EEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERL 282
Query: 326 ERVRKNFSPLPLSFLPHLPTD 346
+++R+ FS ++ +P L +
Sbjct: 283 KQIREKFSDKVVAEVPLLKKE 303
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 114 bits (287), Expect = 1e-28
Identities = 53/325 (16%), Positives = 102/325 (31%), Gaps = 46/325 (14%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLVLHSQDPTA--EYILNCKIG 100
S I GKGG GKTT++ A A+A L+ S DP K G
Sbjct: 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI--STDPAHNLSDAFCQKFG 71
Query: 101 NSP--VVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDS 158
V NLS + I+ + +QA N L ++ + G +PG+D
Sbjct: 72 KDARKVEGLPNLSCMEIDPEAAMSD---LQQQASQYNNDPNDPLKSMMSDMTGSIPGIDE 128
Query: 159 IFSAFALERLVGFFGNFAQRNH-QKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRN 217
S + + + ++ + I++D TLR + + S L ++
Sbjct: 129 ALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKD 188
Query: 218 VAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHK 277
++ K LG + + + E + + + + + P
Sbjct: 189 LSGK--LGPMLSMMGGGQQQDIF---------------EKLNEVQKNVSEVNEQFTNPEL 231
Query: 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI----------------CTASPHLD 321
V S+ R + V + C + +
Sbjct: 232 TTFICVCIS-EFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQ 290
Query: 322 EESAERVRKNFSPLPLSFLPHLPTD 346
++ +++ + + L +P L +
Sbjct: 291 KKYLDQMGELYEDYHLVKMPLLGCE 315
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 111 bits (280), Expect = 9e-28
Identities = 52/319 (16%), Positives = 98/319 (30%), Gaps = 49/319 (15%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA--EYILNCKIGNSP 103
S I GKGG GKTT++ A + S L+ S DP K G
Sbjct: 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI--STDPAHNLSDAFGTKFGKDA 73
Query: 104 --VVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFS 161
V NLSA+ I+ E A L G++ + +PG+D +
Sbjct: 74 RKVPGFDNLSAMEIDPNLSIQE-----MTEQADQQNPNNPLSGMMQDLAFTIPGIDEALA 128
Query: 162 AFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEK 221
+ + + + +FD +++D TLR + + L L ++ +
Sbjct: 129 FAEILKQI-----------KSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSR 177
Query: 222 TDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCF 281
++++ SI G N ++M + + P
Sbjct: 178 ----------FGPMINQMGSIMGVN--ANEQDLFGKMESMRANISEVNKQFKNPDLTTFV 225
Query: 282 LVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI--------------CTASPHLDEESAER 327
V S+ R + C A + ++ +
Sbjct: 226 CVCIS-EFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQ 284
Query: 328 VRKNFSPLPLSFLPHLPTD 346
+ + + + +P +P +
Sbjct: 285 IEELYEDFHVVKVPQVPAE 303
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 105 bits (263), Expect = 2e-25
Identities = 55/333 (16%), Positives = 104/333 (31%), Gaps = 57/333 (17%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMA--GLSTCLVLHSQDP---TAEYILNCKI 99
+ I GKGG GKTTS+ A A++ L+ S DP ++ K
Sbjct: 14 TSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI--STDPAHNLSD-AFGEKF 70
Query: 100 GNSP--VVCNSNLSAVRI-------ETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEEL 150
G V +NLS + I + M + N ++ + GG + +
Sbjct: 71 GKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLT 130
Query: 151 GVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARL 210
G +PG+D S + + + Q + E FD +++D TLR + + +
Sbjct: 131 GSIPGIDEALSFMEVMKHIK-----RQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 211 YLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSS 270
L+ + K LG + + + + + +E
Sbjct: 186 LLEKFGEITNK--LGPMLNSFMGAGNVDIS---------------GKLNELKANVETIRQ 228
Query: 271 ALAEPHKFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI----------------- 313
+P V S+ R I V I
Sbjct: 229 QFTDPDLTTFVCVCIS-EFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKR 287
Query: 314 CTASPHLDEESAERVRKNFSPLPLSFLPHLPTD 346
C A + ++ +++ + + + +P +
Sbjct: 288 CQARWKMQKKYLDQIDELYEDFHVVKMPLCAGE 320
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 103 bits (258), Expect = 8e-25
Identities = 57/325 (17%), Positives = 105/325 (32%), Gaps = 53/325 (16%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTA--EYILNCKIGNS 102
+ +S I GKGG GKTT++ A A S L+ S DP + K G
Sbjct: 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL--STDPAHNLSDAFSQKFGKE 69
Query: 103 PVVCN--SNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIF 160
+ NL A+ I+ + L GV+ + +PG+D
Sbjct: 70 ARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVM----QDLAYAIPGIDEAM 125
Query: 161 SAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAE 220
S + + V ++ IV+D TLR + + L + ++
Sbjct: 126 SFAEVLKQV-----------NSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSG 174
Query: 221 KTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRM---LERGSSALAEPHK 277
+ G L L G L NG T +++ + +D + + ++ +
Sbjct: 175 Q--YGSLLNGIL----------GGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERL 222
Query: 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI---------------CTASPHLDE 322
V P S+ R G + CTA + +
Sbjct: 223 TTFVCVCIP-EFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQK 281
Query: 323 ESAERVRKNF-SPLPLSFLPHLPTD 346
+ +++ + + + +P L +
Sbjct: 282 KYLDQIEELYDEEFNVVKMPLLVEE 306
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 89.6 bits (222), Expect = 2e-19
Identities = 48/324 (14%), Positives = 88/324 (27%), Gaps = 70/324 (21%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP---TAEYILNCKIGNS 102
+ F GKGG GKT+ + A A G LV S DP + + + IGN+
Sbjct: 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV--STDPASNVGQ-VFSQTIGNT 61
Query: 103 PVVCNS--NLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLG---GVVGEELGVLPGMD 157
S LSA+ I+ + + + V + G + D
Sbjct: 62 IQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFD 121
Query: 158 SIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRN 217
+FD I++D T+R++ + ++
Sbjct: 122 EFTG-------------LLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPE 168
Query: 218 VAEKTDLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHK 277
A + L AL++P +
Sbjct: 169 GASCLG-------PMAGLEK-----------------------QREQYAYAVEALSDPKR 198
Query: 278 FGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAI---------------CTASPHLDE 322
LV ++++ R G + + A ++
Sbjct: 199 TRLVLVARL-QKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQ 257
Query: 323 ESAERVRKNFSPLPLSFLPHLPTD 346
E+ + + + LP L P +
Sbjct: 258 EALANLPADLAGLPTDTLFLQPVN 281
Score = 62.3 bits (151), Expect = 1e-10
Identities = 42/219 (19%), Positives = 63/219 (28%), Gaps = 28/219 (12%)
Query: 17 HHLKGRRKSRSRRPRAMPISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMA 76
+ + R S S D LI +GKGG GKTT A A A
Sbjct: 295 QPVASPSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM 354
Query: 77 GLSTCLVLHSQDPTA--EYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWLKQADAR 134
G L + DP A LN + N L RI+ + + +
Sbjct: 355 GFDVHLT--TSDPAAHLSMTLNGSLNN--------LQVSRIDPHEETER---YRQHVLET 401
Query: 135 LNMTQGVLGGVVGEELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGIS 194
G + EE P + I A R++ ++ +V D
Sbjct: 402 KGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVI-----------REAGKRFVVMDTAP 450
Query: 195 PEETLRMIGVSSKARLYLKYLRNVAEK--TDLGRLTAPS 231
TL ++ + + T + L P
Sbjct: 451 TGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPE 489
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 4e-10
Identities = 71/462 (15%), Positives = 126/462 (27%), Gaps = 154/462 (33%)
Query: 44 ENDKSTTLITFLGKGGSGKTTSAVFAAQHY----AMAG------LSTCLVLHSQDPTAEY 93
+ + G GSGKT A+ Y M L C +S + E
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEM 201
Query: 94 ILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQG------VLGGVVG 147
+ P + + + I+ ++ ++ RL ++ VL V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIK------LRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 148 EELGVLPGMDSIFSAFALE-------RLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLR 200
+ ++AF L R +F ++P+E
Sbjct: 256 AK---------AWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVK- 304
Query: 201 MIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEALSISGRRPLL---------NG 251
L LKYL DL P E L+ + P +G
Sbjct: 305 --------SLLLKYLDC--RPQDL-----PR------EVLTTN---PRRLSIIAESIRDG 340
Query: 252 NTSAEIW-----DAMDRMLERGSSALAEPHKF-GCF--LVMNPNNRTSVN---SAL-RYW 299
+ + W D + ++E + L EP ++ F L + P + + L W
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPS---AHIPTILLSLIW 396
Query: 300 GCTIQAGAQVAGAICTASPHLDEESAERVRKNFSPLPLSFLPHLPTDSSLDWNTIMLNPA 359
+ + V SL +
Sbjct: 397 F------------------DVIKSDVMVVVNKLH------------KYSL------VEKQ 420
Query: 360 GKEAR----DL-LSLQAKRSS------SLMSSVKFDAAKKSVTLLMPGFDKSEIKLYQYR 408
KE+ + L L+ K + S++ S L+ P D+ Y +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHI 477
Query: 409 G---GSELLVEAGDQRRVIHLPPQIQGKVGGARFIERNLIVT 447
G + E R++ L RF+E+ +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL---------DFRFLEQKIRHD 510
Score = 47.2 bits (111), Expect = 1e-05
Identities = 46/316 (14%), Positives = 82/316 (25%), Gaps = 104/316 (32%)
Query: 182 KEKFDVIVYDGISPEETLRMIGV--SSKARLYLKYLRNVAEKTDLGRLTA--------PS 231
KE+ D I+ + TLR+ S + + K++ V + + L + PS
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPS 106
Query: 232 LLKLVDEALSISGRRPLLNGNTSAEIWDAMD----RMLERGSSALAE--PHKF------- 278
+ + I R L N N +++ + + + AL E P K
Sbjct: 107 M----MTRMYIEQRDRLYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 279 GCFLVMNPNNRTS-VNSALR------------YW---GCTIQAGA----------QVAGA 312
G +T +W Q+
Sbjct: 160 GS-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 313 ICTAS------PHLDEESAERVRKNFS--PLPLSFLPHLPTDSSLD--WNTIMLNPAGKE 362
+ S +R+ P L L N +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNVQN--------AK 257
Query: 363 ARDLLSLQAK-----RSSSLMSSVKFDAAKK-SVTLLMPGFDKSEIKLYQYRGGSELLVE 416
A + +L K R + + S+ E+K LL++
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--------SLLLK 309
Query: 417 AGDQRRVIHLPPQIQG 432
D R LP ++
Sbjct: 310 YLDC-RPQDLPREVLT 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 7e-05
Identities = 61/372 (16%), Positives = 113/372 (30%), Gaps = 131/372 (35%)
Query: 182 KEKFDVIV---YDGISPEETLRMIGVSSKARLYLKYLRNVAEKTDLGRLTA-PSLLKLVD 237
+E+F+ I+ +G + ++ ++ A L K+L V+ + ++ +L L
Sbjct: 34 QEQFNKILPEPTEGFAADDEP-----TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 238 EALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKF------GCFLVMNPNNRTS 291
L GN +I ++L+ + L + + + P ++ S
Sbjct: 89 TEF----ENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 292 VNSALRYWGCTIQA------------GAQ--------------------VAGAICTASPH 319
NSAL +A G Q V I ++
Sbjct: 142 -NSAL------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 320 LDE--ESAERVRKNFS-PLPL-SFLPH---LPTDSSLD-----WNTIML----------- 356
L E + K F+ L + +L + P L I +
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 357 ----NPAGKEARDLLS-----LQAKRSSSLMSSVK-----FDAAKKSVTLL--------- 393
P E R L Q ++ ++ F + +K++T+L
Sbjct: 255 LLGFTPG--ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 394 -MPGFDKSEIKLYQYRGGSE------LLVEAGDQRRVI--------HLPPQIQGKVG--- 435
P L +E L + Q +V HLP Q ++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 436 GARFIERNLIVT 447
GA +NL+V+
Sbjct: 373 GA----KNLVVS 380
Score = 43.5 bits (102), Expect = 1e-04
Identities = 54/298 (18%), Positives = 89/298 (29%), Gaps = 109/298 (36%)
Query: 155 GMDSIFSAFALERLVGFFGNFAQRNHQKEK--FDV--IVYDGISPEE-TLRMIGVSSKAR 209
GMD ++ + V + N A H K+ F + IV + +P T+ G K R
Sbjct: 1632 GMD-LYKTSKAAQDV--W-NRADN-HFKDTYGFSILDIVIN--NPVNLTIHFGGEKGK-R 1683
Query: 210 LYLKYLRNVAEKTDLGRLTAPSLLKLVDEALS---ISGRRPLLN--GNTSAEIWDAMDRM 264
+ Y + E G+L + K ++E + + LL+ T A+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP----AL--- 1736
Query: 265 LERGSSALAEPHKFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVAGAICTASPH-LDEE 323
L+ + L+ G I A A AG H L E
Sbjct: 1737 ----------------TLM-----EKAAFEDLKSKG-LIPADATFAG-------HSLGEY 1767
Query: 324 SAERVRKNFSPLP-----LSFLPHLPTDSSLDWNTIMLNPAGKEARDLLSLQAKRSSSLM 378
+A L +S L+ + R ++
Sbjct: 1768 AA---------LASLADVMSI------------------------ESLVEVVFYRGMTMQ 1794
Query: 379 SSVKFDAAKKSVTLLM---PG-----FDKSEIKLYQYRGGSE--LLVEA------GDQ 420
+V D +S ++ PG F + ++ R G LVE Q
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Score = 30.0 bits (67), Expect = 1.9
Identities = 50/296 (16%), Positives = 83/296 (28%), Gaps = 104/296 (35%)
Query: 32 AMPISASDAGTDENDKSTTLITFL---GKGGSGKTTSAVFAAQH-YAMAGLSTCLVLHSQ 87
A+ I+ +D+ IT L G Y L ++ S
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIG-----------VRCYEAYPNTSLPPSILEDSL 328
Query: 88 D-----PTAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNM----- 137
+ P+ +L+ NL+ +++ ++ N A ++ +
Sbjct: 329 ENNEGVPS--PMLSIS----------NLTQEQVQD---YVNKTNSHLPAGKQVEISLVNG 373
Query: 138 -TQGVLGG----VVG-----EELGVLPGMDS--I-FSAFALERLVGFFGNF--------- 175
V+ G + G + G+D I FS ER + F F
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS----ERKLKFSNRFLPVASPFHS 429
Query: 176 -----------AQRNHQKEKFDV----I-VY---DGISPEETLRMIGVSSKARLYLKYLR 216
F+ I VY DG LR++ S R+ +R
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG----SDLRVLSGSISERIVDCIIR 485
Query: 217 NVA--EKT---------DLGRLTAPSLLKLVDEALSISGRRPL----LNGNTSAEI 257
E T D G A L L +G R + L+ N +
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 39.7 bits (93), Expect = 9e-04
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 52 ITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLV 83
I+FL KGGSGKTT+ + A + +G + +V
Sbjct: 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 37.8 bits (88), Expect = 0.004
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 56 GKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
GKGG GKTT A + A V
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAV 34
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 37.9 bits (88), Expect = 0.005
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 36 SASDAGTDENDKSTTLITFL-GKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+A+ A + ++++ F GG G +T A A +A G +
Sbjct: 130 AANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 35.1 bits (81), Expect = 0.026
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 52 ITFLG-KGGSGKTTSAVFAAQHYAMAGLSTCLV 83
IT KGG GKTT+AV + + A+ G T L+
Sbjct: 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc
genomics, PSI-2, protein structure initiative, joint
center structural genomics; 2.55A {Bacillus halodurans}
Length = 233
Score = 34.3 bits (79), Expect = 0.057
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 195 PEETLRMIGVS-SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEAL 240
+E LR GVS K Y+R+V E + GRL L +
Sbjct: 94 SDEALRQAGVSKRKIE----YIRHVCEHVESGRLDFTELEGAEATTV 136
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.059
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 11/39 (28%)
Query: 220 EKTDLGRLTAPSLLKLV--DEALSISGRRPLLNGNTSAE 256
EK L +L + LKL D A P L + E
Sbjct: 18 EKQALKKLQ--ASLKLYADDSA-------PALAIKATME 47
Score = 28.8 bits (63), Expect = 2.3
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 387 KKSVTLLMPGFDKSEIKLYQYRGGSELLVEA 417
K+++ L ++ +KLY L ++A
Sbjct: 19 KQALKKL-----QASLKLYADDSAPALAIKA 44
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase);
lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum}
SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A*
1rba_A
Length = 490
Score = 33.7 bits (76), Expect = 0.12
Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 1/129 (0%)
Query: 192 GISPEETLRMIGVSSKARLYLKYLRNVAEKTDL-GRLTAPSLLKLVDEALSISGRRPLLN 250
G+ P+ ++K + R T + + A +G L +
Sbjct: 194 GLRPKPFAEACHAFWLGGDFIKNDEPQGNQPFAPLRDTIALVADAMRRAQDETGEAKLFS 253
Query: 251 GNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMNPNNRTSVNSALRYWGCTIQAGAQVA 310
N +A+ + E E LV + + R A
Sbjct: 254 ANITADDPFEIIARGEYVLETFGENASHVALLVDGYVAGAAAITTARRRFPDNFLHYHRA 313
Query: 311 GAICTASPH 319
G SP
Sbjct: 314 GHGAVTSPQ 322
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 33.3 bits (75), Expect = 0.15
Identities = 28/234 (11%), Positives = 57/234 (24%), Gaps = 35/234 (14%)
Query: 14 TSFHHLKGRRKSRSRRPRAMP---ISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAA 70
++F R +RR P A++ ++ + + G G GKTT+
Sbjct: 11 SAFDQAARSRGHNNRRTALRPRRQQEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLV 70
Query: 71 QHYAMAGLSTCL-------VLHSQDPTAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLE 123
+ + VL + + A + + + + V
Sbjct: 71 ALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGM 130
Query: 124 PLNWLKQADARLNMTQGVLGGVVGEELGVLPGMD-SIFSA---FALERLVGFFGNFAQRN 179
P A + L ++ D +A + R +
Sbjct: 131 PYAVTDAVLAPHIGGEAGSSHAPPPALTLI--FDRHPIAALLCYPAARYLMGSMTPQAVL 188
Query: 180 HQKEKF------DVIVYDGISPEETLRMIGVSSKAR---------LYLKYLRNV 218
IV + + + + R L +R V
Sbjct: 189 AFVALIPPTLPGTNIVLGALPEDRHIDRL----AKRQRPGERLDLAMLAAIRRV 238
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 32.8 bits (75), Expect = 0.21
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 57 KGGSGKTTSAVFAAQ------HYAMAGLSTCLV 83
KGG KT S V A H M L ++
Sbjct: 117 KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 32.2 bits (74), Expect = 0.24
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 47 KSTTLITFL-GKGGSGKTTSAV-FAAQHYAMAGLSTCLV 83
+ + F+ KGG G + A FA + V
Sbjct: 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 32.5 bits (74), Expect = 0.25
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 23/96 (23%)
Query: 16 FHHLKGRRKSRSRRPRAMPISASDAG-----TDENDKSTTL--ITFLGKGGSGK--TTSA 66
HH S + +P A G DE DK T GKGG GK T+S
Sbjct: 1 MHHHHHHHGMGSPKDLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSN 60
Query: 67 VFAAQHYAMAGL------------STCLVLHSQDPT 90
+ AA +++ G ST + S PT
Sbjct: 61 LSAA--FSILGKRVLQIGCDPKHDSTFTLTGSLVPT 94
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase;
HET: AMP; 2.3A {Homo sapiens}
Length = 199
Score = 31.7 bits (73), Expect = 0.26
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 38 SDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
S G E+ + +I +G GSGK T + Y LST
Sbjct: 1 SMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH,
niaid, borellia burgdorferi, plasmid partition protein,
iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 31.8 bits (73), Expect = 0.34
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Query: 17 HHLKGRRKSRSRRPRAMPISASDAGTDENDKSTTLITFLG-KGGSGKTTSAV-FAA 70
HH G +++++ P +M ++K +IT KGG GK+TSA+ A
Sbjct: 6 HHHMGTLEAQTQGPGSM-----------DNKKPKIITIASIKGGVGKSTSAIILAT 50
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial
cell division, cell cycle; 2.60A {Archaeoglobus
fulgidus} SCOP: c.37.1.10
Length = 263
Score = 31.4 bits (72), Expect = 0.46
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 56 GKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
GKGG+GKTT A G +V
Sbjct: 10 GKGGTGKTTITANLGVALAQLGHDVTIV 37
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 31.4 bits (72), Expect = 0.49
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 56 GKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
GKGG GKTTS+ A A G T ++
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVI 37
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB:
1g3r_A* 1ion_A*
Length = 237
Score = 30.9 bits (71), Expect = 0.57
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 56 GKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
GKGG+GKTT + G V
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAV 37
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA
repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Length = 225
Score = 31.2 bits (71), Expect = 0.60
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 195 PEETLRMIGVS-SKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDEAL 240
+ LR +G+S +K R ++ A G++ L DE +
Sbjct: 102 SGDDLRGVGLSWAKVR----TVQAAAAAAVSGQIDFAHLSGQPDELV 144
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 31.2 bits (71), Expect = 0.68
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 57 KGGSGKTTSAVFAAQHYAMA 76
KGG KT S V A +
Sbjct: 120 KGGVSKTVSTVTLAHALRVH 139
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair,
N1-methyladenine, N3-methylcytosine, hyperthermophiles,
hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus}
PDB: 2jhj_A
Length = 295
Score = 30.9 bits (70), Expect = 0.72
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 166 ERLVGFFGNFAQRNHQKEKFDVIVYDGISPE-------ETLRMIGVS-SKARLYLKYLRN 217
++VG FG+ + E + Y + E E LR G+S KA +
Sbjct: 141 AKIVGRFGD------EVEWNGLKFYGFPTQEAILKAGVEGLRECGLSRRKAE----LIVE 190
Query: 218 VAEKTDLGRLTAPSLLKLVDEALSISG 244
+A++ +L L + + S G
Sbjct: 191 IAKEENLEELKEWGEEEAYEYLTSFKG 217
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A
{Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 30.9 bits (70), Expect = 0.76
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 57 KGGSGKTTSAVFAAQHYAMAGLSTCLV 83
KGG+GK+T AV G ++
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAKVAVI 39
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.8 bits (66), Expect = 1.1
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHS 86
L+ F G+GKTT G+ L+ H+
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 30.1 bits (67), Expect = 1.3
Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 31/207 (14%)
Query: 40 AGTDENDKSTTLITFL-GKGGSGKTTSAVFAAQHYAMAGLSTCLV---------LHSQDP 89
+ + K L +L G G GKTT+A H+A+ L+ L +D
Sbjct: 2 STDKTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDA 61
Query: 90 TAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEE 149
+ V + + +F P + + L T V +E
Sbjct: 62 ICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKE 121
Query: 150 LGVLPGMD-SIFSA---FALER-LVGF-----FGNFAQRNHQKEKFDVIVYDGISPEETL 199
+ D ++ F L R LVG + +V +S L
Sbjct: 122 PYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHL 181
Query: 200 RMI--------GVSSKARLYLKYLRNV 218
+ V+ ++ LRNV
Sbjct: 182 SRVSKRARPGETVNLP---FVMVLRNV 205
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 29.8 bits (68), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+E K T +I +G GSGK T Q Y LST
Sbjct: 3 EEKLKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 30.2 bits (68), Expect = 1.5
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 34/119 (28%)
Query: 180 HQKEK-FDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDE 238
Q K + + G E ++ + R Y++ A + KL +
Sbjct: 270 DQWNKVIEQL---GTPCPEFMKKL--QPTVRNYVENRPKYAGL---------TFPKLFPD 315
Query: 239 ALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMNPNNRTSVNSALR 297
+L + N +++ D + +ML V++P R SV+ AL+
Sbjct: 316 SLFPADS--EHNKLKASQARDLLSKML-----------------VIDPAKRISVDDALQ 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ LG G+GK T AV A+ + +ST
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 51
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 29.9 bits (67), Expect = 1.9
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 17 HHLKGRRKSRSRRPRAMPISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHY 73
HH+ + + P + + K L+ +G G+GK+ ++ A H+
Sbjct: 9 HHMDYASVAMAAAPTTTTTTNVSLRRQRHRK-EKLLVLMGATGTGKSRLSIDLAAHF 64
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase;
structural genomics consortium, SGC, transferase; 2.37A
{Cryptosporidium parvum iowa II}
Length = 388
Score = 29.7 bits (67), Expect = 2.2
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 29/119 (24%)
Query: 180 HQKEK-FDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDE 238
+Q E+ VI E + I S A+ ++ L+ E + + K +
Sbjct: 238 NQLERIIGVI---DFPSNEDVESIQ-SPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLL 293
Query: 239 ALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMNPNNRTSVNSALR 297
+ + + E D +D++L NPN R S N AL+
Sbjct: 294 KI-------NPKADCNEEALDLLDKLL-----------------QFNPNKRISANDALK 328
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 29.5 bits (67), Expect = 2.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+I F+G GSGKTT+ A +Y G TCL+
Sbjct: 97 TKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding,
hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Length = 188
Score = 28.9 bits (65), Expect = 2.4
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 20/84 (23%)
Query: 154 PGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLK 213
P D+I SA A L G A V G ET L
Sbjct: 12 PDTDTICSAIAYADLKNKLGFNA----------EPVRLGQVNGETQYA----------LD 51
Query: 214 YLRNVAEKTDLGRLTAPSLLKLVD 237
Y + + + + + LVD
Sbjct: 52 YFKQESPRLVETAANEVNGVILVD 75
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 29.1 bits (66), Expect = 2.5
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 13 LTSFHHLKGRRKSRSRRPRAMPISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQH 72
+ HH + +++ K + LG GSGK T AQ+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAS---------KLLRAV-ILGPPGSGKGTVCQRIAQN 50
Query: 73 YAMAGLST 80
+ + LS+
Sbjct: 51 FGLQHLSS 58
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.9 bits (64), Expect = 2.5
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 49 TTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHS-------QDPTAEYILNCKIGN 101
+ +++ +G SGKTT GL +V + G
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGA 61
Query: 102 SPVVCNSNLSAVRIETTKMFLEPLNWL 128
V+ + A ++ L+W+
Sbjct: 62 DVVIASPVKLAFIRRVSEEEGNDLDWI 88
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 29.0 bits (66), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 57 KGGSGKTTSAVFAAQHYAMAGLSTCLV 83
KGG GKTT+A+ A + A G LV
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLV 41
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling
pathways, linear binding motif; HET: ANP; 1.33A {Homo
sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A*
2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X*
2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A*
1pmq_A* ...
Length = 371
Score = 29.3 bits (66), Expect = 2.7
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 34/119 (28%)
Query: 180 HQKEK-FDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEKTDLGRLTAPSLLKLVDE 238
Q K + + G E ++ + R Y++ A S KL +
Sbjct: 233 DQWNKVIEQL---GTPCPEFMKKL--QPTVRTYVENRPKYAGY---------SFEKLFPD 278
Query: 239 ALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFLVMNPNNRTSVNSALR 297
L + N +++ D + +ML V++ + R SV+ AL+
Sbjct: 279 VLFPADS--EHNKLKASQARDLLSKML-----------------VIDASKRISVDEALQ 318
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.9 bits (65), Expect = 2.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88
D L+ G GSGK+T + A + GL +V D
Sbjct: 16 DPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV--PMD 59
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair,
helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF);
HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Length = 228
Score = 28.5 bits (64), Expect = 3.5
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 195 PEETLRMIGVS-SKARLYLKYLRNVAEKTDLGRLTAPSLL-KLVDEAL 240
E +R G S K L+++AE T G + +L +E L
Sbjct: 94 DFEIMRACGFSARKID----SLKSIAEATISGLIPTKEEAERLSNEEL 137
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 28.7 bits (65), Expect = 3.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 34 PISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
P + E+ K + LG G+GK T A A+++ + L+T
Sbjct: 2 PNVPAAEPVPESPKGVRAV-LLGPPGAGKGTQAPKLAKNFCVCHLAT 47
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 28.8 bits (64), Expect = 3.9
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 233 LKLVDEALSISGRRPLLN-GNTS-AEIWDAMDRMLERG 268
+ + +S R GN A ++D + R + G
Sbjct: 350 MPDEWPSGLLSYSRDSYTSGNRGGAAVFDILRRAHDAG 387
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 27.9 bits (63), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ FLG G+GK T A AQ LST
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLST 35
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 28.5 bits (64), Expect = 4.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 233 LKLVDEALSISGRRPLLN-GNTS-AEIWDAMDRMLERG 268
L++ A S R L GN + A + DA+ R+ + G
Sbjct: 292 LEVDPHAFRFS-RATLTEYGNIASAVVLDALRRLFDEG 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 28.0 bits (63), Expect = 4.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
I G GSGK T Y++A + +
Sbjct: 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex,
hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP:
c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Length = 309
Score = 28.3 bits (63), Expect = 5.6
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 20/84 (23%)
Query: 154 PGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLK 213
P D+I SA A L G A V G ET L
Sbjct: 12 PDTDTICSAIAYADLKNKLGFNA----------EPVRLGQVNGETQYA----------LD 51
Query: 214 YLRNVAEKTDLGRLTAPSLLKLVD 237
Y + + + + + LVD
Sbjct: 52 YFKQESPRLVETAANEVNGVILVD 75
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.1 bits (63), Expect = 5.8
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 233 LKLVDEALSISGRRPLLN-GNTS-AEIWDAMDRMLERG 268
L + E + S L GN + ++ M+++
Sbjct: 327 LGISAELAAQS-WDVLARFGNMLSVSLIFVLETMVQQA 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.0 bits (63), Expect = 6.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
FLG GSGK T ++ + + LST
Sbjct: 32 YIFLGAPGSGKGTQSLNLKKSHCYCHLST 60
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 27.5 bits (62), Expect = 6.4
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 36 SASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+A+ + + ++I LG G+GK T + Y+ LS
Sbjct: 2 AATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 28.0 bits (61), Expect = 6.7
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLS 79
LI G SGK T+A F +Y+
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQ 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 6.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 51 LITFLGKGGSGKTTSAVFAAQH 72
+T G G GK+ A A +
Sbjct: 149 WVTIYGMAGCGKSVLAAEAVRD 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+G GSGK T + H+ + LS+
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHFELKHLSS 38
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.5 bits (62), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ +G GSGK T F + Y +A LST
Sbjct: 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 27.9 bits (62), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 233 LKLVDEALSISGRRPLLN-GNT-SAEIWDAMDRMLERG 268
L L L+ S RR L + GN A + A+D + +
Sbjct: 314 LGLEPGKLAAS-RRVLSDYGNMSGATVIFALDELRRQR 350
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.6 bits (61), Expect = 8.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCK 98
T L K G+GK+ +A M G ++ DP EY C+
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIII----DPEREYKEMCR 80
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.5 bits (62), Expect = 8.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ +G G+GK T A + + A L+T
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 35
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A*
2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A*
1zip_A* 1s3g_A*
Length = 216
Score = 27.5 bits (62), Expect = 8.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ +G G+GK T + Y + +ST
Sbjct: 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 27.0 bits (60), Expect = 8.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAG 77
+ LI G+ GSGK++ + A +
Sbjct: 22 KEGINLII--GQNGSGKSS--LLDAILVGLYW 49
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 27.2 bits (61), Expect = 8.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ FLG G+GK T A A+ +ST
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIST 31
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; 2.30A {Giardia lamblia}
Length = 135
Score = 26.9 bits (59), Expect = 9.0
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 24/108 (22%)
Query: 16 FHHLKGRRKSRSRRPRAMP-------ISASDAGTDE--NDKSTTLITFLGKGGSGKTTSA 66
HH G +++++ P +MP + D D L GK
Sbjct: 5 HHHHMGTLEAQTQGPGSMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGK--------- 55
Query: 67 VFAAQHYAMAGLSTCLVLH--SQDPTAEYILNCKIGNSPVVCNSNLSA 112
Y MAG+ + S D ++ IG N ++SA
Sbjct: 56 ---PVSYCMAGVRKADMSFGTSTDLCC-FVDFYCIGVISQAKNPSISA 99
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 27.1 bits (61), Expect = 9.3
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
++ LG GSGK T + + LS
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 27.6 bits (61), Expect = 9.5
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNSNLS 111
+ G+ G+GKT A+ AQ A+ + +E I + ++ + + +
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQ--ALG----PDTPFTAIAGSE-IFSLEMSKTEALTQAFRR 125
Query: 112 AVRIETTK 119
++ +
Sbjct: 126 SIGVRIKA 133
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.1 bits (61), Expect = 9.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
I +G G+GK T A + Y + +ST
Sbjct: 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 27.2 bits (61), Expect = 9.9
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 57 KGGSGKTTSAV-FAA 70
KGG GK+ + FA
Sbjct: 45 KGGVGKSKLSTMFAY 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,679,142
Number of extensions: 403682
Number of successful extensions: 1185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 94
Length of query: 449
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 352
Effective length of database: 3,993,456
Effective search space: 1405696512
Effective search space used: 1405696512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.1 bits)