RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013114
(449 letters)
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 66.2 bits (160), Expect = 9e-13
Identities = 46/319 (14%), Positives = 85/319 (26%), Gaps = 60/319 (18%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP--TAEYILNCKIGNSP 103
+ F GKGG GKT+ + A A G LV S DP + + IGN+
Sbjct: 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV--STDPASNVGQVFSQTIGNTI 62
Query: 104 VVCNSNLSAVRIETTKMFLEPLNWLKQAD-ARLNMTQGVLGGVVGEELGVLPGMDSIFSA 162
S +E + D + + V+ + + G + F
Sbjct: 63 QAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDE 122
Query: 163 FALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYLRNVAEKT 222
F +FD I++D T+R++ + ++ A
Sbjct: 123 FTGLLTD---------ASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCL 173
Query: 223 DLGRLTAPSLLKLVDEALSISGRRPLLNGNTSAEIWDAMDRMLERGSSALAEPHKFGCFL 282
+ AL++P + L
Sbjct: 174 G------------------------------PMAGLEKQREQYAYAVEALSDPKRTRLVL 203
Query: 283 VMNPNNRTSVNSALRYWGCTIQAGAQVAGAI---------------CTASPHLDEESAER 327
V +++ R G + + A ++E+
Sbjct: 204 VARLQK-STLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALAN 262
Query: 328 VRKNFSPLPLSFLPHLPTD 346
+ + + LP L P +
Sbjct: 263 LPADLAGLPTDTLFLQPVN 281
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 49.2 bits (116), Expect = 3e-07
Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 24/196 (12%)
Query: 28 RRPRAMPISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQ 87
+RP +SA N+ LI +GKGG GKTT A A A G L +
Sbjct: 1 QRPDIPSLSALVDDIARNEH--GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT--TS 56
Query: 88 DPTAEYILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVG 147
DP + + N +L+ +++ E + + G +
Sbjct: 57 DPA---------AHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLL 107
Query: 148 EELGVLPGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSK 207
EE P + I A R++ ++ +V D TL ++ +
Sbjct: 108 EEDLRSPCTEEIAVFQAFSRVI-----------REAGKRFVVMDTAPTGHTLLLLDATGA 156
Query: 208 ARLYLKYLRNVAEKTD 223
+
Sbjct: 157 YHREIAKKMGEKGHFT 172
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 38.6 bits (88), Expect = 7e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 56 GKGGSGKTTSAVFAAQHYAMAGLSTCLV-LHSQDPTAEYILNC 97
GKGG+GKTT A G +V E IL
Sbjct: 9 GKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGM 51
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 37.4 bits (85), Expect = 0.002
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 52 ITFL-GKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
I+ + GKGG+GKTT + G V
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 36.9 bits (84), Expect = 0.002
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI 99
++I LG G+GK T + Y+ LS +L ++ A I
Sbjct: 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELI 58
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 37.2 bits (85), Expect = 0.002
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+ GKGG GK+T+ G + +V
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 36.5 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQ 87
+E K + +I +G GSGK T Q Y LST +L ++
Sbjct: 2 EEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAE 46
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 36.0 bits (82), Expect = 0.007
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
GKGG GK+T+ A G +V
Sbjct: 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 34.6 bits (78), Expect = 0.014
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGN 101
+ LG G+GK T + Y LS +L + + I
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEK 53
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 34.1 bits (77), Expect = 0.019
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
+ +G G+GK T A Y + +ST +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFR 36
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.7 bits (76), Expect = 0.020
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
I LG +GK T A F + Y + +ST +L
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLR 36
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 33.7 bits (76), Expect = 0.021
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYI 94
+ LG G+GK T AV A+ + +ST + +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKL 45
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 33.4 bits (75), Expect = 0.029
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
+ +G G+GK T A + + A L+T +L
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLR 38
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 33.2 bits (75), Expect = 0.037
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
DK +I +G G+GK T+A A Y G LV
Sbjct: 9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA 48
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.9 bits (74), Expect = 0.038
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
I +G G+GK T A + Y +ST +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFR 36
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 33.0 bits (74), Expect = 0.043
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
LG G+GK T A A+++ + L+T +L
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLR 39
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 32.8 bits (74), Expect = 0.047
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEY 93
K L +G GSGKTT+A A +Y G LV A
Sbjct: 8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR 54
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 32.6 bits (73), Expect = 0.049
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYI 94
++ LG GSGK T + + LS +L + +
Sbjct: 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKD 51
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 32.7 bits (74), Expect = 0.055
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 43 DENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEY 93
+ K+ +I +G G GKTT+ A+ + G S L A
Sbjct: 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAV 53
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 32.5 bits (73), Expect = 0.066
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDP 89
+ G SGK T Y +A +S +L ++
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIA 43
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 32.8 bits (74), Expect = 0.091
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYA-MAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNSNL 110
I G+ G+GKT SA +A +++A ++G ++ + + + I+ IGN+ N N
Sbjct: 97 IIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIM-ESIGNAKTTRNDNS 155
Query: 111 S 111
S
Sbjct: 156 S 156
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 31.7 bits (71), Expect = 0.11
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
+G GSGK T + +H+ + LS+ +L
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLR 42
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 31.6 bits (71), Expect = 0.11
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+ ++ +G G GKTT+ ++Y G
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 40
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.5 bits (70), Expect = 0.13
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
++ G G G TTS+ A + G++ +V
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 35
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 31.2 bits (70), Expect = 0.16
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+ +I +G G+GKTTS A+ + G S L
Sbjct: 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 45
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 32.0 bits (72), Expect = 0.18
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI----------GN 101
G+ G+GKT + + A + E L +I GN
Sbjct: 124 CLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGN 183
Query: 102 SPVVCNSNLS 111
+ N+N S
Sbjct: 184 AKTTRNNNSS 193
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 31.6 bits (71), Expect = 0.25
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKI----------GN 101
I G+ G+GKT + Q++A S Q + L +I GN
Sbjct: 126 ILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGN 185
Query: 102 SPVVCNSNLS 111
+ V N N S
Sbjct: 186 AKTVRNDNSS 195
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 31.2 bits (70), Expect = 0.31
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCL----VLHSQDPTAEYILNCKIGNSPVVCN 107
+ G+ G+GKT + Q+ A VL Q A IL GN+ N
Sbjct: 128 LLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEA-FGNAKTTRN 186
Query: 108 SNLS 111
+N S
Sbjct: 187 NNSS 190
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 30.0 bits (67), Expect = 0.57
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLS---TCLVLHSQDPTAEYILNCKIGNSPVVCNS 108
+ G+ G+GKT ++ Q + + + +L GN+ + N
Sbjct: 89 VIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEA-FGNAKTLRND 147
Query: 109 NLS 111
N S
Sbjct: 148 NSS 150
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.6 bits (65), Expect = 0.58
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
LI G G+GK T + + AG S +
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.6 bits (65), Expect = 0.59
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+ G G GK+T + G++ ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.6 bits (65), Expect = 0.62
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGN 101
+ G G GKTT A++ +G+ + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVT 53
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.2 bits (64), Expect = 0.73
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
TLI +G GKT + ++ G+ T
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 36
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.9 bits (63), Expect = 0.94
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
IT G G+GK T A+ L +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLLDS 34
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 29.2 bits (65), Expect = 1.0
Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 25/192 (13%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV---------LHSQDPTAEYILNCKIGNS 102
I G G GKTT+A H+A+ L+ L +D +
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLN 67
Query: 103 PVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMD-SIFS 161
V + + +F P + + L T V +E + D +
Sbjct: 68 GDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIA 127
Query: 162 A---FALERLVGFFGNFAQRNHQKEKF------DVIVYDGISPEETLRMIGVSSKARLY- 211
+ F L R + + A +V +S L + S +AR
Sbjct: 128 STICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRV--SKRARPGE 185
Query: 212 ---LKYLRNVAE 220
L ++ +
Sbjct: 186 TVNLPFVMVLRN 197
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 28.8 bits (63), Expect = 1.1
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAE 92
++ G GK+T + Y ++T V Q+ A
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAA 45
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 28.1 bits (62), Expect = 1.2
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQD 88
+ G +GKT + A + + D
Sbjct: 4 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 41
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.4 bits (62), Expect = 1.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
LI G +GK+T + + AG L+
Sbjct: 5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 37
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVL 84
I G SGK+T A A+ + L T +
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 38
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 28.4 bits (62), Expect = 1.5
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
I G G+GKTT+ + G+ +
Sbjct: 4 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 38
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 28.6 bits (63), Expect = 1.6
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 42 TDENDKSTTLITFLGKGGSGKTTSAVFAAQHY 73
+ D + + G+ GSGK+ A A
Sbjct: 37 DEMCDLDSFFLFLHGRAGSGKSVIASQALSKS 68
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/169 (10%), Positives = 36/169 (21%), Gaps = 16/169 (9%)
Query: 49 TTLITFLGKGGSGKTTSAVFAAQHY---------------AMAGLSTCLVLHSQDPTAEY 93
+ LG SGK+ A + + G + A
Sbjct: 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALG 66
Query: 94 ILNCKIGNSPVVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVL 153
TT+ F + + + +
Sbjct: 67 HQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTE 126
Query: 154 PGMDSIFSAFALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMI 202
D + S + ++ F + K K I + S + +
Sbjct: 127 WVDDGLRSLGSQKQRQQFQQLLKKL-LDKYKVPYIEIESPSYLDRYNQV 174
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.9 bits (61), Expect = 2.3
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 45 NDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPV 104
++ I G SGK+T AV L + + LN +G S
Sbjct: 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN--IRFGLNKDLGFSEA 77
Query: 105 VCNSNLSAVRIETTKMF 121
N N+ +
Sbjct: 78 DRNENIRRIAEVAKLFA 94
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 27.7 bits (60), Expect = 2.4
Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 18/189 (9%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH------SQDPTAEYILNCKIGNSPV 104
I+ G +GK+T Q + V +QD E ++ K G + +
Sbjct: 4 KISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVL 63
Query: 105 V-CNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAF 163
+ A + + E + +
Sbjct: 64 QMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLY 123
Query: 164 A--------LERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKAR---LYL 212
+ + Q + D I+Y +PE L I + + + L
Sbjct: 124 ESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPL 183
Query: 213 KYLRNVAEK 221
+YL + K
Sbjct: 184 EYLEKLHYK 192
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.9 bits (60), Expect = 2.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
+ LI G+ GSGK++ + A +
Sbjct: 22 KEGINLII--GQNGSGKSS--LLDAILVGLYWPLR 52
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 28.0 bits (62), Expect = 2.4
Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 41/235 (17%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLSTCL--VLHSQDPTAEYILNCKIGNSPVVCNS 108
+ G G GKTT+ + + + + + A + I + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIA-NIYTTQHRLDQ 64
Query: 109 NLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMDSIFSAFALERL 168
+ M + + +GG G P + IF + L
Sbjct: 65 GEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAAL 124
Query: 169 VGF-FGNFAQRNHQKEKF-------------DVIVYDGISPEETLRMIGVSSKARLY--- 211
+ + + + + IV + + + + + + R
Sbjct: 125 LCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRL--AKRQRPGERL 182
Query: 212 -LKYLRNVAE------------------KTDLGRLTAPSLLKLVDEALSISGRRP 247
L L + + D G+L+ ++ E S +G RP
Sbjct: 183 DLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRP 237
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 2.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTC 81
I G G GKTT A + ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVG 36
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.8 bits (60), Expect = 2.5
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 44 ENDKSTTLITFLGKGGSGKTTSA-VFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNS 102
+ + + G G+GK T + + + + L + +S
Sbjct: 28 DQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 87
Query: 103 PVVCNSNLS 111
P S
Sbjct: 88 PYHLEITPS 96
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 27.3 bits (59), Expect = 2.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHY 73
I G G+GKT+ A A
Sbjct: 8 ILITGTPGTGKTSMAEMIAAEL 29
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.3 bits (59), Expect = 2.9
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 47 KSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
+ +G GSGK+ A A A L +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL 40
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.3 bits (59), Expect = 3.1
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLH 85
+ F G+GKTT G+ L+ H
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.3 bits (59), Expect = 4.0
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 50 TLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEY 93
T+ + GG+GK+ A+ A A + P
Sbjct: 30 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYL 73
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.8 bits (58), Expect = 4.5
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 46 DKSTTLITFLGKGGSGKTTSAVFAAQHY 73
D ++ G GSGK+T A A
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLP 28
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.5 bits (57), Expect = 4.6
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 51 LITFLGKGGSGKTTSAVFAAQHYAMAGLST 80
L G G GK+T+ A +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIE 33
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 27.0 bits (58), Expect = 4.8
Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 23/191 (12%)
Query: 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCK--------I 99
+ T G+ +GKT + + G E
Sbjct: 38 AITEAF--GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 95
Query: 100 GNSPVVCNSNLSAVRIETTKMFLEPLNWLKQ--ADARLNMTQGVLGGVVGEELGVLPGMD 157
N+ R T++ +E L+++ + ++ ++ G
Sbjct: 96 NVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRG 155
Query: 158 SIFS-AFALERLVGFFGNFAQR--------NHQKEKFDVIVYDGISPEETLRMIGVS--S 206
+ L +++ ++ N + P++ + ++ S
Sbjct: 156 ELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHAS 215
Query: 207 KARLYLKYLRN 217
R+ L+ R
Sbjct: 216 TTRISLRKGRG 226
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 25.6 bits (56), Expect = 4.9
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 163 FALERLVGFFGNFAQRNHQKEKFDVIVYDGISPEETLRMIGVSSKARLYLKYL 215
F L LV FG Q ++ V IS + L I Y + L
Sbjct: 37 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESI--------YFRIL 81
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 26.9 bits (58), Expect = 4.9
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 30 PRAMPISASDAGTDENDKSTTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLV 83
P+ + +D E ++ LI +G G SG +A AA + GL LV
Sbjct: 4 PKKYELYKADEVPTEVVETDILI--IGGGFSG-CGAAYEAAYWAKLGGLKVTLV 54
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 27.0 bits (59), Expect = 6.1
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCLVLHSQDPTAEYILNCKIGNSPVVCNSNLS 111
I G+ G+GKT + Q+ A+ S + ++ + N L
Sbjct: 94 ILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILE 153
Query: 112 A 112
A
Sbjct: 154 A 154
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 26.5 bits (58), Expect = 6.3
Identities = 23/191 (12%), Positives = 52/191 (27%), Gaps = 27/191 (14%)
Query: 52 ITFLGKGGSGKTTSAVFAAQHYAMAGLSTCL---VLHSQDPTAEYIL-----NCKIGNSP 103
I G G GK+T+ A + + + + + ++
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQG 68
Query: 104 VVCNSNLSAVRIETTKMFLEPLNWLKQADARLNMTQGVLGGVVGEELGVLPGMD-SIFSA 162
+ + + + F P L L + G + V D ++
Sbjct: 69 NLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLV---FDRHPVAS 125
Query: 163 ---FALERLVGFFGNFAQRNHQKEKF------DVIVYDGISPEETLRMIGVSSKARLY-- 211
F R + + IV ++ EE +R + ++AR+
Sbjct: 126 TVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRL--RTRARIGEQ 183
Query: 212 --LKYLRNVAE 220
+ + +
Sbjct: 184 IDITLIATLRN 194
>d1slua_ b.16.1.1 (A:) Ecotin, trypsin inhibitor {Escherichia coli
[TaxId: 562]}
Length = 133
Score = 25.5 bits (56), Expect = 9.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 416 EAGDQRRVIHLPPQ 429
E G +R+VI L PQ
Sbjct: 8 EKGMKRQVIQLTPQ 21
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.8 bits (55), Expect = 9.4
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 48 STTLITFLGKGGSGKTTSAVFAAQHYAMAGLSTCL 82
+T +I G +GK+ L+ +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,568,926
Number of extensions: 70525
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 64
Length of query: 449
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 361
Effective length of database: 1,199,356
Effective search space: 432967516
Effective search space used: 432967516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.6 bits)