BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013115
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
pdb|2QJF|B Chain B, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
Length = 405
Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/391 (55%), Positives = 280/391 (71%), Gaps = 33/391 (8%)
Query: 75 DLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNC 134
+L VPE++ L T+AE++P +K+ K+D++WV V++EGWA+PL GFMRE EYLQ LHF+C
Sbjct: 17 ELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDC 76
Query: 135 LRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERI 194
L DG ++N+S+PIVL E KER+ T AL+ G + ILR+ E ++H KEER
Sbjct: 77 LL--DGGVINLSVPIVLTATHEDKERLDGCTAFALMY-EGRRVAILRNPEFFEHRKEERC 133
Query: 195 ARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQ 254
AR WGTT PY++ V+ G+WL+GGDL+VL + +NDGLD YRL+P +L+++F +
Sbjct: 134 ARQWGTTCKNHPYIKMVME-QGDWLIGGDLQVLDRVYWNDGLDQYRLTPTELKQKFKDMN 192
Query: 255 ADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQ 314
ADA+FAFQLRNP+HNGHALLM DT ++LLE GY+ P+LLLHPLGG+TK DDVPL RM+Q
Sbjct: 193 ADAVFAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKDDDVPLMWRMKQ 252
Query: 315 HSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPT 374
H+ VLE+GVL+PETT+V+IFPSPM YAGPTEVQWH +AR+ AGANFYIVGRDPAGM HP
Sbjct: 253 HAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPE 312
Query: 375 EKRDLYDPDHGKKVLSMALGLEKLNILPF-----------------------------RM 405
+DLY+P HG KVL+MA GL L I+PF RM
Sbjct: 313 TGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRM 372
Query: 406 RTFARSGENPPDGFMCPGGWKVLVQYYESLQ 436
R AR G+ PP+GFM P W VL +YY+SL+
Sbjct: 373 RKLAREGQKPPEGFMAPKAWTVLTEYYKSLE 403
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/391 (55%), Positives = 279/391 (71%), Gaps = 33/391 (8%)
Query: 75 DLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNC 134
+L VPE++ L T+AE++P +K+ K+D++WV V++EGWA+PL GFMRE EYLQ LHF+C
Sbjct: 236 ELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDC 295
Query: 135 LRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERI 194
L DG ++N+S+PIVL E KER+ T AL+ G + ILR+ E ++H KEER
Sbjct: 296 LL--DGGVINLSVPIVLTATHEDKERLDGCTAFALM-YEGRRVAILRNPEFFEHRKEERC 352
Query: 195 ARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQ 254
AR WGTT PY++ V+ G+WL+GGDL+VL + +NDGLD YRL+P +L+++F +
Sbjct: 353 ARQWGTTCKNHPYIKMVME-QGDWLIGGDLQVLDRVYWNDGLDQYRLTPTELKQKFKDMN 411
Query: 255 ADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQ 314
ADA+ AFQLRNP+HNGHALLM DT ++LLE GY+ P+LLLHPLGG+TK DDVPL RM+Q
Sbjct: 412 ADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKDDDVPLMWRMKQ 471
Query: 315 HSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPT 374
H+ VLE+GVL+PETT+V+IFPSPM YAGPTEVQWH +AR+ AGANFYIVGRDPAGM HP
Sbjct: 472 HAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPE 531
Query: 375 EKRDLYDPDHGKKVLSMALGLEKLNILPF-----------------------------RM 405
+DLY+P HG KVL+MA GL L I+PF RM
Sbjct: 532 TGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRM 591
Query: 406 RTFARSGENPPDGFMCPGGWKVLVQYYESLQ 436
R AR G+ PP+GFM P W VL +YY+SL+
Sbjct: 592 RKLAREGQKPPEGFMAPKAWTVLTEYYKSLE 622
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 175/349 (50%), Gaps = 27/349 (7%)
Query: 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKV--KLTKIDLEWVHVVSEGWASPLRGFMREN 124
P GG+L DL+ ++ ++ +EA+S + LT L + ++ G SPL GF+ EN
Sbjct: 4 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 63
Query: 125 EYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIE 184
+Y S R+ DG++ ++PI L +D+ +I T +AL I IL +
Sbjct: 64 DY--SSVVTDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 119
Query: 185 IYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYND--GLDHYRLS 242
+YK NK R + P + + AG++ VGG LE ++ ++ D GL R +
Sbjct: 120 VYKPNKTIEAERVFRGDPEH-PAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 175
Query: 243 PQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302
P QLR EF +RQ D + AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 176 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 229
Query: 303 ADDVPLDVRMEQHSKVLE---DGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359
D+ R+ + ++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 230 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 284
Query: 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTF 408
+IVGRD AG G ++ D Y P ++++ + ++PFRM T+
Sbjct: 285 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTY 333
>pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
Length = 510
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 175/349 (50%), Gaps = 27/349 (7%)
Query: 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKV--KLTKIDLEWVHVVSEGWASPLRGFMREN 124
P GG+L DL+ ++ ++ +EA+S + LT L + ++ G SPL GF+ EN
Sbjct: 3 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 62
Query: 125 EYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIE 184
+Y S R+ DG++ ++PI L +D+ +I T +AL I IL +
Sbjct: 63 DY--SSVVTDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 118
Query: 185 IYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYND--GLDHYRLS 242
+YK NK + + P + + AG++ VGG LE ++ ++ D GL R +
Sbjct: 119 VYKPNKTIEAEKVFRGDPEH-PAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 174
Query: 243 PQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302
P QLR EF +RQ D + AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 175 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 228
Query: 303 ADDVPLDVRMEQHSKVLE---DGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359
D+ R+ + ++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 229 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 283
Query: 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTF 408
+IVGRD AG G ++ D Y P ++++ + ++PFRM T+
Sbjct: 284 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTY 332
>pdb|1J70|A Chain A, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|B Chain B, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|C Chain C, Crystal Structure Of Yeast Atp Sulfurylase
Length = 514
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 175/349 (50%), Gaps = 27/349 (7%)
Query: 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKV--KLTKIDLEWVHVVSEGWASPLRGFMREN 124
P GG+L DL+ ++ ++ +EA+S + LT L + ++ G SPL GF+ EN
Sbjct: 7 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 66
Query: 125 EYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIE 184
+Y S R+ DG++ ++PI L +D+ +I T +AL I IL +
Sbjct: 67 DY--SSVVTDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 122
Query: 185 IYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYND--GLDHYRLS 242
+YK NK + + P + + AG++ VGG LE ++ ++ D GL R +
Sbjct: 123 VYKPNKTIEAEKVFRGDPEH-PAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 178
Query: 243 PQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302
P QLR EF +RQ D + AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 179 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 232
Query: 303 ADDVPLDVRMEQHSKVLE---DGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359
D+ R+ + ++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 233 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 287
Query: 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTF 408
+IVGRD AG G ++ D Y P ++++ + ++PFRM T+
Sbjct: 288 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTY 336
>pdb|1R6X|A Chain A, The Crystal Structure Of A Truncated Form Of Yeast Atp
Sulfurylase, Lacking The C-Terminal Aps Kinase-Like
Domain, In Complex With Sulfate
Length = 395
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 175/349 (50%), Gaps = 27/349 (7%)
Query: 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKV--KLTKIDLEWVHVVSEGWASPLRGFMREN 124
P GG+L DL+ ++ ++ +EA+S + LT L + ++ G SPL GF+ EN
Sbjct: 3 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 62
Query: 125 EYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIE 184
+Y S R+ DG++ ++PI L +D+ +I T +AL I IL +
Sbjct: 63 DY--SSVVTDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 118
Query: 185 IYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYND--GLDHYRLS 242
+YK NK + + P + + AG++ VGG LE ++ ++ D GL R +
Sbjct: 119 VYKPNKTIEAEKVFRGDPEH-PAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 174
Query: 243 PQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302
P QLR EF +RQ D + AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 175 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 228
Query: 303 ADDVPLDVRMEQHSKVLE---DGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359
D+ R+ + ++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 229 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 283
Query: 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTF 408
+IVGRD AG G ++ D Y P ++++ + ++PFRM T+
Sbjct: 284 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTY 332
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 155/303 (51%), Gaps = 16/303 (5%)
Query: 101 IDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKER 160
+DLE + V G +PL FM E +Y + +R+K G++ +PI L ++ E +
Sbjct: 18 LDLELLAV---GAFTPLDRFMGEEDYRNVV--ESMRLKSGTL--FPIPITLPMEKEIAKD 70
Query: 161 IGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLV 220
+ + L P + I+R E+YK N E GTT P V E+ T G + +
Sbjct: 71 LKEGEWIVLRDPKNVPLAIMRVEEVYKWNLEYEAKNVLGTTDPRHPLVAEMHT-WGEYYI 129
Query: 221 GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRR 280
G+L+V++ KY D YR +P+Q+R+E + D I AFQ RNP+H H L T+R
Sbjct: 130 SGELKVIQLPKYYD-FPEYRKTPKQVREEIKSLGLDKIVAFQTRNPMHRVHEEL---TKR 185
Query: 281 RLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340
+ ++G LLLHP+ G TK DV + RM + KVL + D + TI++ P M
Sbjct: 186 AMEKVGGG---LLLHPVVGLTKPGDVDVYTRMRIY-KVLYEKYYDKKKTILAFLPLAMRM 241
Query: 341 AGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNI 400
AGP E WH R N GA +IVGRD A G ++ + YDP +++ + +
Sbjct: 242 AGPREALWHGIIRRNYGATHFIVGRDHASPGKDSKGKPFYDPYEAQELFKKYEDEIGIKM 301
Query: 401 LPF 403
+PF
Sbjct: 302 VPF 304
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 174/399 (43%), Gaps = 56/399 (14%)
Query: 68 PDGGVLVDLVVPESERGLR-TTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEY 126
P GGVL DL+ ++ R EAES+P V LT+ L + ++ G SPL GFM + +Y
Sbjct: 5 PHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADY 64
Query: 127 LQSLHFNCLRMKDGSIVNMSLPIVL----AIDDETKERIGSTTNVALLGPTGDLIGILRS 182
+ N R+ DG++ S+PI L + DE K + GS + +L IL
Sbjct: 65 DRVCEDN--RLADGNV--FSMPITLDASQEVIDEKKLQAGSRITLRDFRDDRNL-AILTI 119
Query: 183 IEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLS 242
+IY+ +K + +G P + + + +GG +E + + + D + R +
Sbjct: 120 DDIYRPDKTKEAKLVFGGDPEH-PAIVYLNNTVKEFYIGGKIEAVNKLNHYDYV-ALRYT 177
Query: 243 PQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302
P +LR FD + AFQ RNP+H H L R + +L+HP+ G TK
Sbjct: 178 PAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARS------RQANVLIHPVVGLTK 231
Query: 303 ADDVPLDVRMEQHSKVLE---DGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359
D+ R+ + +L +G+ ++ + M GP E WHA R N GA
Sbjct: 232 PGDIDHFTRVRAYQALLPRYPNGM-----AVLGLLGLAMRMGGPREAIWHAIIRKNHGAT 286
Query: 360 FYIVGRDPAGMGHPTEKRDLYDP------------------------------DHGKKVL 389
+IVGRD AG G ++ D Y P D + V
Sbjct: 287 HFIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVD 346
Query: 390 SMALGLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVL 428
+ G++ LNI +R RSG + P+ F P K+L
Sbjct: 347 QVPAGVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKIL 385
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 175/398 (43%), Gaps = 54/398 (13%)
Query: 68 PDGGVLVDLVVPESERGLR-TTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEY 126
P GGVL DL+ ++ R EAES+P V LT+ L + ++ G SPL GFM + +Y
Sbjct: 5 PHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADY 64
Query: 127 LQSLHFNCLRMKDGSIVNMSLPIVLAIDDET--KERIGSTTNVALLGPTGDL-IGILRSI 183
+ N R+ DG++ S+PI L E ++++ + + + L D + IL
Sbjct: 65 DRVCEDN--RLADGNV--FSMPITLDASQEVIDEKKLQAASRITLRDFRDDRNLAILTID 120
Query: 184 EIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSP 243
+IY+ +K + +G P + + + +GG +E + + + D + R +P
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEH-PAIVYLNNTVKEFYIGGKIEAVNKLNHYDYV-ALRYTP 178
Query: 244 QQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA 303
+LR FD + AFQ RNP+H H L R + +L+HP+ G TK
Sbjct: 179 AELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARS------RQANVLIHPVVGLTKP 232
Query: 304 DDVPLDVRMEQHSKVLE---DGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANF 360
D+ R+ + +L +G+ ++ + M GP E WHA R N GA
Sbjct: 233 GDIDHFTRVRAYQALLPRYPNGM-----AVLGLLGLAMRMGGPREAIWHAIIRKNHGATH 287
Query: 361 YIVGRDPAGMGHPTEKRDLYDP------------------------------DHGKKVLS 390
+IVGRD AG G ++ D Y P D + V
Sbjct: 288 FIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQ 347
Query: 391 MALGLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVL 428
+ G++ LNI +R RSG + P+ F P K+L
Sbjct: 348 VPAGVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKIL 385
>pdb|1V47|A Chain A, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
pdb|1V47|B Chain B, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
Length = 349
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 154/315 (48%), Gaps = 34/315 (10%)
Query: 91 ESMPKVKL---TKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSL 147
E++P +++ ++DLE + + G P++GFM E L H +R+ G + ++
Sbjct: 3 ETLPALEIGEDERLDLENL---ATGAFFPVKGFMTREEALSVAH--EMRLPTGEV--WTI 55
Query: 148 PIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPY 207
PI+L + K R+G VALL G+ + +L E Y+ + E +GT + P
Sbjct: 56 PILLQFRE--KPRVGPGNTVALLH-GGERVALLHVAEAYELDLEALARAVFGTDSETHPG 112
Query: 208 VEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPI 267
V + G + + G +EVLKP + L+ +P+++R F R + AFQ RN
Sbjct: 113 VARLYG-KGPYALAGRVEVLKP-RPRTPLEK---TPEEVRAFFRQRGWRKVVAFQTRNAP 167
Query: 268 HNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPE 327
H H L+ R LE+ +L+HP+ G K DD P +V +E + ++ D L E
Sbjct: 168 HRAHEYLI----RLGLELADG---VLVHPILGAKKPDDFPTEVIVEAYQALIRD-FLPQE 219
Query: 328 TTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKK 387
+PM YAGP E +HA R N GA ++VGRD AG+G D YDP +
Sbjct: 220 RVAFFGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVG------DFYDPYAAHR 273
Query: 388 VLSM--ALGLEKLNI 400
+ LG+E + +
Sbjct: 274 IFDRLPPLGIEIVKV 288
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 165/398 (41%), Gaps = 62/398 (15%)
Query: 79 PESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMK 138
PE L ++EAES+P V ++ ++ G+ SPL GFM + L S + +
Sbjct: 18 PEQHHRL-SSEAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQ--SMTLT 74
Query: 139 DGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPT--GDLIGILRSIEIYKHNKEERIA- 195
DG + L +L E+ + I T +AL P G+ + + + + + ++A
Sbjct: 75 DGRFFPVPLLCLL----ESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMAL 130
Query: 196 ---RTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKY-NDGLDHYRLSPQQLRKEFD 251
+ +GT+ P VE G + G ++VL + D D +R + ++R E
Sbjct: 131 MTEQVYGTSDPKHPGVE-TFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTA-VEIRHEIQ 188
Query: 252 NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311
R I AFQ RNP+H H L + G +++H L G K D+P VR
Sbjct: 189 ERGWQKIVAFQTRNPMHRAHEELCKMAMEAVEADG-----VVIHMLLGQLKPGDIPAPVR 243
Query: 312 MEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 371
+ + + + P T +V+ + M YAGP E HA R N GA +I+GRD AG+G
Sbjct: 244 -DAAIRTMAELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVG 302
Query: 372 HPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTFARS-------------------- 411
D Y P + + A+ + L I FR A S
Sbjct: 303 ------DYYGPFDAQTIFDDAVPTDVLAIEIFRADNTAYSKKLGRVVMMRDAPDHTPDDF 356
Query: 412 --------------GENPPDGFMCPGGWKVLVQYYESL 435
GE PP F P ++L+ YY SL
Sbjct: 357 IQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSL 394
>pdb|1JHD|A Chain A, Crystal Structure Of Bacterial Atp Sulfurylase From The
Riftia Pachyptila Symbiont
Length = 396
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/405 (25%), Positives = 166/405 (40%), Gaps = 72/405 (17%)
Query: 79 PESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMK 138
PE L + EAES+P V ++ ++ G+ SPL+GFM + + + + +
Sbjct: 18 PEEHHKL-SHEAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAA--EKMTLS 74
Query: 139 DGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPT--GDLIGILRSIEIYKHNKEERIA- 195
DGS +P++ + E + IG +AL P G+ + + IE + +E++A
Sbjct: 75 DGSF--FPVPVLCLL--ENTDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAV 130
Query: 196 ------RTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYN-DGLDHYRLSPQQLRK 248
RT G+ + G V G ++VL + D D +R + ++R
Sbjct: 131 MTDKVYRTTDMDHIGV----KTFNSQGRVAVSGPIQVLNFSYFQADFPDTFR-TAVEIRN 185
Query: 249 EFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPL 308
E + AFQ RNP+H H L L G +++H L G K D+P
Sbjct: 186 EIKEHGWSKVVAFQTRNPMHRAHEELCRMAMESLDADG-----VVVHMLLGKLKKGDIPA 240
Query: 309 DVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368
VR + + + + P T +V+ + M YAGP E HA R N GA +I+GRD A
Sbjct: 241 PVR-DAAIRTMAEVYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHA 299
Query: 369 GMGH---PTEKRDLYD---------------------------------PDHGKKVLSMA 392
G+G + + ++D PDH K+ +
Sbjct: 300 GVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLL 359
Query: 393 LGLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQYYESLQA 437
G ++R G PP F P K+L+ YY+S+ +
Sbjct: 360 SGT--------KVREMLGQGIAPPPEFSRPEVAKILMDYYQSINS 396
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 119/311 (38%), Gaps = 62/311 (19%)
Query: 65 LIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEW-----VHVVSEGWASPLRG 119
LIEP GG LV+L+ PE L+ EA S+P +DL+W + ++ G SPL G
Sbjct: 5 LIEPYGGTLVNLIDPEKREALKH-EALSLPS-----LDLDWQQQCELEMLMTGAYSPLTG 58
Query: 120 FMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGI 179
FM + + + ++ DGS PI L D +AL G ++ I
Sbjct: 59 FMTRAQCARV--ESAQQLDDGSF--WPSPITLTSRDRALADRRPGERLALRDGEGYMLAI 114
Query: 180 LRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHY 239
L +++K + W + G++E + D +
Sbjct: 115 LTLSDVWKDGE--------------------------RWHLAGEVEGAALPPHPDFVS-L 147
Query: 240 RLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPI-----LLL 294
R +P +LR F R I A+Q R P+H E K+ I LLL
Sbjct: 148 RATPAELRALFVRRGWRRIIAWQARQPMHRAQ-----------YEFCLKSAIENEANLLL 196
Query: 295 HP-LGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKAR 353
HP +GG + P + + + D TT +S+ P+P A + A
Sbjct: 197 HPQVGG--DITEAPAYFGLVRSFLAIRD-RFPAATTQLSLLPAPPPEASGRALLLRAIVA 253
Query: 354 INAGANFYIVG 364
N G + I G
Sbjct: 254 RNFGCSLLIAG 264
>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|C Chain C, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|D Chain D, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
Length = 167
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
Query: 292 LLLHPLGGFTKADDVPLD-------VRMEQHSKVLEDGVL 324
+L P G FTKA D+ LD VR +++S V+EDGV+
Sbjct: 96 MLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVV 135
>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
Length = 402
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 161 IGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLV 220
+ +T NV G ++ + ++ ++ ++K R AR + A P ++ I+P+ W
Sbjct: 192 VSTTVNV-----DGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIK-AISPSEGWTT 245
Query: 221 GGDLEVLKPIKYNDGL 236
GG ++ + DGL
Sbjct: 246 GGATVIIIGDNFFDGL 261
>pdb|1Y0K|A Chain A, Structure Of Protein Of Unknown Function Pa4535 From
Pseudomonas Aeruginosa Strain Pao1, Monooxygenase
Superfamily
Length = 209
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 395 LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLV 429
LE LN+ P+R FA GE PPD G++V
Sbjct: 38 LEALNV-PYRQEDFAAPGEQPPDVLFKGAGFEVFF 71
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 211 VITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNG 270
++TP GN L+ DLE P+ + S ++L +F + + I + G
Sbjct: 30 IVTPRGNILINSDLEANVPM--------IKASIKKLGFKFSDTKILLISHAHFDHAA--G 79
Query: 271 HALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGV-LDPETT 329
L+ T+ + + M ++L F A+D KVL DG ++ T
Sbjct: 80 SELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGT 139
Query: 330 IVSIFPSPMHYAGPTEVQWHAKAR 353
+++ +P H G T W K +
Sbjct: 140 VLTAHLTPGHTRGCT--TWTMKLK 161
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 211 VITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNG 270
++TP GN L+ DLE P+ + S ++L +F + + I + G
Sbjct: 30 IVTPRGNILINSDLEANVPM--------IKASIKKLGFKFSDTKILLISHAHFDHAA--G 79
Query: 271 HALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGV-LDPETT 329
L+ T+ + + M ++L F A+D KVL DG ++ T
Sbjct: 80 SELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGT 139
Query: 330 IVSIFPSPMHYAGPTEVQWHAKAR 353
+++ +P H G T W K +
Sbjct: 140 VLTAHLTPGHTRGCT--TWTMKLK 161
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 135 LRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTG----DLIGILRSIEIYKHNK 190
LRM+ G+I + AI D KE S NVA+ G TG I LR I N+
Sbjct: 44 LRMRKGNIQLTNS----AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI----GNE 95
Query: 191 EERIART 197
EE A+T
Sbjct: 96 EEGAAKT 102
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 135 LRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTG----DLIGILRSIEIYKHNK 190
LRM+ G+I + AI D KE S NVA+ G TG I LR I N+
Sbjct: 44 LRMRKGNIQLTNS----AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI----GNE 95
Query: 191 EERIART 197
EE A+T
Sbjct: 96 EEGAAKT 102
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 135 LRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTG----DLIGILRSIEIYKHNK 190
LRM+ G+I + AI D KE S NVA+ G TG I LR I N+
Sbjct: 44 LRMRKGNIQLTNS----AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI----GNE 95
Query: 191 EERIART 197
EE A+T
Sbjct: 96 EEGAAKT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,786,478
Number of Sequences: 62578
Number of extensions: 594883
Number of successful extensions: 996
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 30
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)