Query 013115
Match_columns 449
No_of_seqs 167 out of 598
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04149 sat sulfate adenylylt 100.0 2E-120 5E-125 933.0 35.9 353 64-437 2-386 (391)
2 COG2046 MET3 ATP sulfurylase ( 100.0 1E-117 3E-122 892.7 30.5 350 64-437 2-382 (397)
3 PRK05537 bifunctional sulfate 100.0 2E-116 5E-121 941.6 34.7 361 65-438 1-391 (568)
4 cd00517 ATPS ATP-sulfurylase. 100.0 2E-112 5E-117 865.1 32.8 323 93-431 1-353 (353)
5 TIGR00339 sopT ATP sulphurylas 100.0 2E-110 3E-115 859.5 34.5 351 68-430 1-383 (383)
6 KOG4238 Bifunctional ATP sulfu 100.0 2.7E-91 5.8E-96 701.3 23.1 364 71-438 230-627 (627)
7 PF01747 ATP-sulfurylase: ATP- 100.0 7.4E-72 1.6E-76 534.5 15.8 184 236-432 1-215 (215)
8 KOG0636 ATP sulfurylase (sulfa 100.0 1.9E-65 4.1E-70 512.6 1.7 388 59-448 43-462 (466)
9 PF14306 PUA_2: PUA-like domai 100.0 9.2E-54 2E-58 393.3 10.9 159 66-229 1-160 (160)
10 KOG0636 ATP sulfurylase (sulfa 100.0 2.8E-51 6.2E-56 410.8 -1.7 321 99-439 11-363 (466)
11 cd02039 cytidylyltransferase_l 98.5 7.5E-07 1.6E-11 77.6 8.6 93 263-369 7-104 (143)
12 cd02169 Citrate_lyase_ligase C 97.9 6.6E-05 1.4E-09 76.1 10.8 163 232-413 92-281 (297)
13 cd02168 NMNAT_Nudix Nicotinami 97.2 0.012 2.6E-07 55.7 14.2 146 263-431 7-165 (181)
14 smart00764 Citrate_ly_lig Citr 97.1 0.0052 1.1E-07 58.2 11.4 98 256-368 2-118 (182)
15 cd02165 NMNAT Nicotinamide/nic 97.0 0.0073 1.6E-07 56.8 11.5 147 263-430 7-188 (192)
16 cd02166 NMNAT_Archaea Nicotina 96.8 0.018 3.9E-07 53.4 11.5 143 263-431 7-156 (163)
17 PRK05379 bifunctional nicotina 96.7 0.036 7.8E-07 57.1 14.4 144 263-431 14-171 (340)
18 cd02163 PPAT Phosphopantethein 96.7 0.018 3.9E-07 52.7 10.7 137 263-429 7-152 (153)
19 TIGR01510 coaD_prev_kdtB pante 96.7 0.038 8.2E-07 50.6 12.8 141 263-430 7-153 (155)
20 PRK00168 coaD phosphopantethei 96.6 0.058 1.3E-06 49.6 13.5 146 262-433 8-158 (159)
21 cd02064 FAD_synthetase_N FAD s 96.5 0.015 3.3E-07 54.3 8.9 141 258-413 2-159 (180)
22 TIGR00482 nicotinate (nicotina 96.4 0.05 1.1E-06 51.4 12.2 149 263-431 5-190 (193)
23 PRK00071 nadD nicotinic acid m 96.4 0.046 9.9E-07 52.0 11.6 151 263-431 12-198 (203)
24 TIGR01527 arch_NMN_Atrans nico 96.2 0.07 1.5E-06 50.0 11.9 137 263-431 7-154 (165)
25 PRK06973 nicotinic acid mononu 96.1 0.13 2.7E-06 51.1 13.4 99 263-368 30-133 (243)
26 PRK01153 nicotinamide-nucleoti 95.9 0.094 2E-06 49.4 11.1 143 263-431 8-157 (174)
27 PRK08887 nicotinic acid mononu 95.9 0.07 1.5E-06 50.0 10.1 146 263-430 10-166 (174)
28 PRK13793 nicotinamide-nucleoti 95.4 0.11 2.5E-06 50.1 9.6 140 265-431 14-166 (196)
29 PRK07152 nadD putative nicotin 95.2 0.27 5.8E-06 50.6 12.3 144 263-431 9-181 (342)
30 cd09286 NMNAT_Eukarya Nicotina 95.0 0.75 1.6E-05 44.9 14.2 157 263-430 8-221 (225)
31 TIGR00083 ribF riboflavin kina 94.7 0.39 8.5E-06 48.8 11.8 150 262-433 5-170 (288)
32 TIGR00124 cit_ly_ligase [citra 94.6 0.12 2.7E-06 53.3 8.1 158 254-432 140-330 (332)
33 PLN02945 nicotinamide-nucleoti 94.1 0.3 6.6E-06 47.9 9.4 162 257-430 22-231 (236)
34 PRK13670 hypothetical protein; 93.8 0.24 5.2E-06 52.3 8.5 97 258-369 6-106 (388)
35 PRK05627 bifunctional riboflav 93.1 1.2 2.7E-05 45.5 12.1 144 257-413 15-174 (305)
36 COG0196 RibF FAD synthase [Coe 92.8 0.53 1.2E-05 48.3 8.9 145 257-413 17-174 (304)
37 PRK13671 hypothetical protein; 92.8 0.54 1.2E-05 48.2 8.8 94 257-370 4-106 (298)
38 PF08218 Citrate_ly_lig: Citra 92.2 0.97 2.1E-05 43.3 9.2 139 256-413 2-166 (182)
39 PF06574 FAD_syn: FAD syntheta 92.2 0.39 8.4E-06 44.5 6.4 105 256-368 6-117 (157)
40 PRK13964 coaD phosphopantethei 91.9 0.9 1.9E-05 41.6 8.3 82 263-365 9-90 (140)
41 cd02167 NMNAT_NadR Nicotinamid 91.7 2.6 5.6E-05 39.0 11.3 84 263-357 7-94 (158)
42 cd02171 G3P_Cytidylyltransfera 91.3 0.6 1.3E-05 40.9 6.3 94 257-369 3-97 (129)
43 PRK07143 hypothetical protein; 89.0 1.7 3.7E-05 44.1 8.2 139 256-413 16-163 (279)
44 TIGR00125 cyt_tran_rel cytidyl 88.6 1.4 3.1E-05 33.7 5.8 55 261-320 5-62 (66)
45 cd02164 PPAT_CoAS phosphopante 88.2 2 4.3E-05 39.3 7.4 69 263-340 7-81 (143)
46 COG1057 NadD Nicotinic acid mo 86.5 2.9 6.2E-05 40.4 7.7 147 263-430 11-191 (197)
47 COG0669 CoaD Phosphopantethein 85.7 3.6 7.7E-05 38.7 7.6 137 263-431 10-157 (159)
48 TIGR01518 g3p_cytidyltrns glyc 81.5 2.9 6.3E-05 36.7 5.1 86 263-369 6-94 (125)
49 TIGR01526 nadR_NMN_Atrans nico 79.7 4.1 8.8E-05 41.9 6.2 51 263-320 9-62 (325)
50 PF01467 CTP_transf_2: Cytidyl 77.4 3.1 6.6E-05 36.1 3.9 53 263-320 5-60 (157)
51 COG3053 CitC Citrate lyase syn 77.3 6.6 0.00014 40.6 6.6 210 211-443 104-348 (352)
52 TIGR02199 rfaE_dom_II rfaE bif 77.1 14 0.00031 33.4 8.2 96 254-369 10-108 (144)
53 PLN02388 phosphopantetheine ad 76.2 8.4 0.00018 36.8 6.7 100 256-369 20-121 (177)
54 cd02172 RfaE_N N-terminal doma 76.2 13 0.00028 33.7 7.7 93 256-368 5-98 (144)
55 COG1056 NadR Nicotinamide mono 76.2 4.7 0.0001 38.4 5.0 63 263-335 11-78 (172)
56 PRK00777 phosphopantetheine ad 75.2 22 0.00048 32.8 9.0 71 257-337 3-78 (153)
57 PRK08099 bifunctional DNA-bind 74.6 42 0.00092 35.7 12.2 97 256-367 53-169 (399)
58 cd02170 cytidylyltransferase c 71.0 15 0.00033 32.4 6.7 90 257-368 3-95 (136)
59 PF05636 HIGH_NTase1: HIGH Nuc 68.3 7.5 0.00016 41.3 4.8 94 258-371 6-108 (388)
60 COG1323 Predicted nucleotidylt 68.0 25 0.00055 37.1 8.6 94 263-371 9-108 (358)
61 cd02156 nt_trans nucleotidyl t 62.8 15 0.00032 31.1 4.8 17 263-279 7-23 (105)
62 PF02569 Pantoate_ligase: Pant 57.2 13 0.00029 37.9 4.1 67 241-311 5-73 (280)
63 cd00560 PanC Pantoate-beta-ala 55.1 7.9 0.00017 39.3 2.1 108 241-366 5-121 (277)
64 TIGR00018 panC pantoate--beta- 54.6 7.8 0.00017 39.5 2.0 63 241-307 5-69 (282)
65 COG0414 PanC Panthothenate syn 51.8 23 0.00049 36.3 4.7 67 241-311 5-73 (285)
66 PRK13477 bifunctional pantoate 51.7 17 0.00037 40.1 4.1 67 241-311 5-71 (512)
67 PRK00380 panC pantoate--beta-a 51.3 10 0.00022 38.6 2.1 62 241-307 5-69 (281)
68 PF14359 DUF4406: Domain of un 50.1 34 0.00074 29.1 4.9 74 218-311 1-80 (92)
69 PF09142 TruB_C: tRNA Pseudour 48.7 18 0.00038 28.2 2.7 34 151-184 4-46 (56)
70 PLN02660 pantoate--beta-alanin 43.7 21 0.00045 36.6 3.1 61 241-305 4-66 (284)
71 COG0231 Efp Translation elonga 41.7 18 0.0004 32.8 2.1 66 91-179 60-125 (131)
72 cd02786 MopB_CT_3 The MopB_CT_ 39.2 57 0.0012 27.6 4.7 36 151-186 33-70 (116)
73 PTZ00308 ethanolamine-phosphat 39.1 1.4E+02 0.0031 31.4 8.5 90 256-368 12-106 (353)
74 PRK07562 ribonucleotide-diphos 37.0 58 0.0013 39.6 5.7 76 114-209 377-453 (1220)
75 cd02781 MopB_CT_Acetylene-hydr 36.0 71 0.0015 27.6 4.9 35 151-185 35-71 (130)
76 KOG3199 Nicotinamide mononucle 35.7 60 0.0013 32.3 4.7 63 257-319 10-74 (234)
77 cd02785 MopB_CT_4 The MopB_CT_ 35.2 79 0.0017 27.3 5.0 37 151-187 34-72 (124)
78 cd02794 MopB_CT_DmsA-EC The Mo 30.0 78 0.0017 27.2 4.1 35 151-185 32-68 (121)
79 cd02789 MopB_CT_FmdC-FwdD The 29.9 97 0.0021 26.5 4.6 34 151-184 33-68 (106)
80 cd02778 MopB_CT_Thiosulfate-R- 29.4 1.3E+02 0.0027 25.7 5.3 36 151-186 32-69 (123)
81 cd02788 MopB_CT_NDH-1_NuoG2-N7 28.7 99 0.0021 25.8 4.4 34 151-184 31-66 (96)
82 cd02790 MopB_CT_Formate-Dh_H F 28.0 89 0.0019 26.2 4.0 36 151-186 37-74 (116)
83 PF12818 Tegument_dsDNA: dsDNA 27.8 6.8E+02 0.015 25.7 11.5 142 215-370 120-280 (282)
84 TIGR01675 plant-AP plant acid 27.5 3.6E+02 0.0079 26.8 8.7 99 172-297 74-173 (229)
85 cd02792 MopB_CT_Formate-Dh-Na- 27.1 1.1E+02 0.0023 26.1 4.4 36 151-186 37-74 (122)
86 cd04470 S1_EF-P_repeat_1 S1_EF 27.1 35 0.00077 26.8 1.3 22 158-179 37-58 (61)
87 COG1355 Predicted dioxygenase 26.8 1.2E+02 0.0025 31.3 5.2 111 329-440 46-182 (279)
88 cd02791 MopB_CT_Nitrate-R-NapA 26.6 1.2E+02 0.0025 25.8 4.6 35 151-185 37-73 (122)
89 COG0549 ArcC Carbamate kinase 26.5 3.6E+02 0.0078 28.2 8.6 147 241-449 135-294 (312)
90 cd02775 MopB_CT Molybdopterin- 25.7 1E+02 0.0023 24.9 4.0 34 151-184 25-60 (101)
91 PF01568 Molydop_binding: Moly 25.6 71 0.0015 26.6 3.0 35 151-185 32-68 (110)
92 cd02779 MopB_CT_Arsenite-Ox Th 25.6 1E+02 0.0023 26.3 4.1 36 151-186 35-72 (115)
93 cd00508 MopB_CT_Fdh-Nap-like T 25.5 98 0.0021 26.0 3.9 36 151-186 37-74 (120)
94 PRK04980 hypothetical protein; 25.0 87 0.0019 27.5 3.4 31 159-189 30-61 (102)
95 PF06239 ECSIT: Evolutionarily 24.5 1E+02 0.0022 30.8 4.2 50 258-330 54-103 (228)
96 PF01472 PUA: PUA domain; Int 24.5 71 0.0015 25.6 2.7 31 148-182 22-52 (74)
97 cd02783 MopB_CT_2 The MopB_CT_ 24.1 1.4E+02 0.003 27.3 4.8 34 151-184 34-69 (156)
98 cd02784 MopB_CT_PHLH The MopB_ 23.9 1E+02 0.0022 28.0 3.9 34 151-184 40-75 (137)
99 cd02780 MopB_CT_Tetrathionate_ 23.6 1.1E+02 0.0025 27.1 4.1 36 151-186 32-69 (143)
100 cd02787 MopB_CT_ydeP The MopB_ 23.6 1.1E+02 0.0023 26.0 3.8 34 151-184 33-68 (112)
101 smart00359 PUA Putative RNA-bi 23.5 88 0.0019 24.3 3.0 22 161-182 31-52 (77)
102 PLN02540 methylenetetrahydrofo 23.4 1.1E+03 0.024 26.7 12.8 196 184-420 4-229 (565)
103 PRK13599 putative peroxiredoxi 23.3 3.8E+02 0.0083 25.9 7.9 97 145-258 91-205 (215)
104 cd02782 MopB_CT_1 The MopB_CT_ 23.3 1.7E+02 0.0038 25.2 5.1 37 151-187 35-73 (129)
105 cd02776 MopB_CT_Nitrate-R-NarG 23.2 1.4E+02 0.003 27.1 4.5 35 151-185 33-69 (141)
106 cd02777 MopB_CT_DMSOR-like The 22.8 1.2E+02 0.0026 26.3 4.0 35 151-185 36-72 (127)
107 cd04463 S1_EF_like S1_EF_like: 22.3 45 0.00097 25.1 1.0 23 157-179 33-55 (55)
108 COG1500 Predicted exosome subu 21.4 21 0.00045 35.6 -1.2 61 151-226 21-87 (234)
109 cd02793 MopB_CT_DMSOR-BSOR-TMA 20.8 1.3E+02 0.0029 26.2 3.9 35 151-185 35-71 (129)
110 PRK08395 fumarate hydratase; P 20.7 89 0.0019 29.6 2.9 27 148-177 2-28 (162)
No 1
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=2.5e-120 Score=932.96 Aligned_cols=353 Identities=32% Similarity=0.532 Sum_probs=336.1
Q ss_pred CCcCCCCccccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCee
Q 013115 64 SLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (449)
Q Consensus 64 ~~i~PhGg~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~ 143 (449)
.++.||||+|++|+|+++++++++++|.+||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 2 ~~~~phgg~l~~l~v~~~~~~~~~~~a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~--~~~rL~~G~~- 78 (391)
T PRK04149 2 MLIPPHGGELVNRVVEGRDREEILEEAESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVV--EEMRLANGLV- 78 (391)
T ss_pred CCCCCCCCcchhccCCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHH--HhCcCCCCCC-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred ccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeee
Q 013115 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (449)
Q Consensus 144 ~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (449)
|||||||+|++|++++|++|++|+|+ ++|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+
T Consensus 79 -wpiPi~L~v~~e~~~~l~~g~~vaL~-~~G~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~ 155 (391)
T PRK04149 79 -WSIPITLDVSEEDAASLKEGDEVALV-YKGEPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGP 155 (391)
T ss_pred -cceeEEEeCCHHHHhhCCCCCEEEEe-eCCEEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeE
Confidence 89999999999999999999999999 79999999999999999999999999999999999999987 5899999999
Q ss_pred EEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC
Q 013115 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA 303 (449)
Q Consensus 224 v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~ 303 (449)
|++++++.+ ++|++||+||+|+|+.|+++||++|||||||||+|||||+|++.| +|.+ ++|||||++|+||+
T Consensus 156 i~~l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~VvafqTrnP~HraHe~l~~~a----~e~~---d~lll~plvG~~k~ 227 (391)
T PRK04149 156 VTLLNRKFH-EPFPRFWLTPAETRELFEEKGWKTVVAFQTRNPPHRAHEYLQKCA----LEIV---DGLLLNPLVGETKS 227 (391)
T ss_pred EEEeecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeecCCCCchHHHHHHHHH----HHhc---CeEEEecCcCCCCC
Confidence 999998775 579999999999999999999999999999999999999999866 4553 79999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCc
Q 013115 304 DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPD 383 (449)
Q Consensus 304 gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~ 383 (449)
||+|+++|||||+++++ ||||+++++|++||++|||||||||+||||+|||||||||||||||||+| +|||+|
T Consensus 228 ~di~~~~r~~~~~~~~~-~y~p~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g------~~Y~~~ 300 (391)
T PRK04149 228 GDIPAEVRMEAYEALLK-NYYPKDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVG------DYYGPY 300 (391)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCcc------ccCCCc
Confidence 99999999999999996 69999999999999999999999999999999999999999999999999 699999
Q ss_pred cchhhhhhc-cCccccccchHH-------------------------------HHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 384 HGKKVLSMA-LGLEKLNILPFR-------------------------------MRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 384 ~aq~i~~~~-~g~~~l~i~p~~-------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
+||+||+++ ++..+|+|++|. ||+||++|+.||+|||||||+++|+++
T Consensus 301 ~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 301 DAQEIFDEFTEEELGITPLKFEEAFYCPKCGGMASEKTCPHGKEDRVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred hHHHHHHhCCcccCCceEEecceeEEecCCCeEEEcccCCCCCCceEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 999999998 455567777776 999999999999999999999999999
Q ss_pred HHhhhh
Q 013115 432 YESLQA 437 (449)
Q Consensus 432 y~~~~~ 437 (449)
|+++..
T Consensus 381 ~~~~~~ 386 (391)
T PRK04149 381 LKKYGY 386 (391)
T ss_pred hhhcCC
Confidence 998654
No 2
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-117 Score=892.71 Aligned_cols=350 Identities=31% Similarity=0.536 Sum_probs=329.1
Q ss_pred CCcCCCCccccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCee
Q 013115 64 SLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (449)
Q Consensus 64 ~~i~PhGg~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~ 143 (449)
.++.||||+||++++.+.+ ..+.+..+|+|+|+.+.++||++|++|+||||+||||++||+||+ ++|||+||++
T Consensus 2 ~~~~phgg~Lv~r~~~~~~---~~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv--~~mRL~~G~~- 75 (397)
T COG2046 2 ALSPPHGGKLVRRVAEERD---AMKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVV--ESMRLANGTL- 75 (397)
T ss_pred CCCCCCcchhhhhhccccc---hHHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHH--HhccccCCCe-
Confidence 3568999999999998866 667889999999999999999999999999999999999999999 8999999999
Q ss_pred ccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeee
Q 013115 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (449)
Q Consensus 144 ~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (449)
|||||||+|++++|.+++.||+|.|.+ .|.++|+|+|+|+|.+||+.+|.+||+|+|++||||+.++ .+|+++|||+
T Consensus 76 -w~iPItl~v~e~~a~~~~~Gd~i~L~~-~g~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~ 152 (397)
T COG2046 76 -WPIPITLDVSEEEAEELSVGDRILLTY-KGDPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGK 152 (397)
T ss_pred -eeeeeEecCchHhhhccCCCCEEEEcc-CCceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeee
Confidence 899999999999999999999999985 9999999999999999999999999999999999999987 6999999999
Q ss_pred EEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC
Q 013115 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA 303 (449)
Q Consensus 224 v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~ 303 (449)
|++++.|.++ +|++|++||+|+|+.|++|||++|||||||||+|||||||||.| ++.. ++|||||+||+||+
T Consensus 153 i~l~~~p~~~-~~~~~~~~P~~~R~~f~~kgwk~vvafQTRNp~HraHEyl~K~A----l~~v---dgllv~plVG~tk~ 224 (397)
T COG2046 153 IELINEPIFK-PFPKYWLTPAETREVFKEKGWKTVVAFQTRNPPHRAHEYLQKRA----LEKV---DGLLVHPLVGATKP 224 (397)
T ss_pred EEEEecCCCC-CchhhccCHHHHHHHHHhcCCeEEEEEecCCCchHHHHHHHHHH----HHhc---CcEEEEeeeccccC
Confidence 9999988876 89999999999999999999999999999999999999999865 4553 78999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCc
Q 013115 304 DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPD 383 (449)
Q Consensus 304 gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~ 383 (449)
||+|+++||++|+++++ +|||+++++|+++|++|||||||||+|||||||||||||||||||||||| +|||+|
T Consensus 225 gD~~~e~rm~~ye~l~~-~Yyp~dr~~Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG------~yYg~Y 297 (397)
T COG2046 225 GDIPDEVRMEYYEALLK-HYYPPDRVFLSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DYYGPY 297 (397)
T ss_pred CCchHHHHHHHHHHHHH-hCCCCCcEEEEecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCcc------ccCCcc
Confidence 99999999999999995 79999999999999999999999999999999999999999999999999 799999
Q ss_pred cchhhhhhccCccccccchHH-------------------------------HHHHHhCCCCCCCCCCchhHHHHHHHHH
Q 013115 384 HGKKVLSMALGLEKLNILPFR-------------------------------MRTFARSGENPPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 384 ~aq~i~~~~~g~~~l~i~p~~-------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y 432 (449)
+||+||++++..-+|++++|+ +|+|||+|..||+|||||||+++|+++|
T Consensus 298 ~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~~ 377 (397)
T COG2046 298 DAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTCPHGDEHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKSL 377 (397)
T ss_pred cHHHHHHhcccccCcEEEeccceeecccccCCcccccCCCCCcceEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHhc
Confidence 999999999743445555555 9999999999999999999999999999
Q ss_pred Hhhhh
Q 013115 433 ESLQA 437 (449)
Q Consensus 433 ~~~~~ 437 (449)
+....
T Consensus 378 ~~~~~ 382 (397)
T COG2046 378 FPYRL 382 (397)
T ss_pred ccccc
Confidence 87643
No 3
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=2.5e-116 Score=941.57 Aligned_cols=361 Identities=30% Similarity=0.504 Sum_probs=343.7
Q ss_pred CcCCCCccccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeec
Q 013115 65 LIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (449)
Q Consensus 65 ~i~PhGg~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~ 144 (449)
+|+||||+|+||+|+++++++++++|.+||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 1 ~~~p~gg~l~~~~~~~~~~~~~~~~a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~--~~~~l~~G~~-- 76 (568)
T PRK05537 1 LILPNGGPLPNLYVSPESREKLKAEALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVL--ENMRLADGTL-- 76 (568)
T ss_pred CCCCCCCcchhcccCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--
Confidence 479999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred cceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeE
Q 013115 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (449)
Q Consensus 145 wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 224 (449)
|||||||+|+++.+++|++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++...|+|+|||+|
T Consensus 77 wpiPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v 156 (568)
T PRK05537 77 WPIPITLDVSEKFAAGLEIGERIALRDQEGVLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPL 156 (568)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEECCCCcEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeE
Confidence 89999999999999999999999999989999999999999999999999999999999999999998655999999999
Q ss_pred EEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC
Q 013115 225 EVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD 304 (449)
Q Consensus 225 ~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~g 304 (449)
++++++.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||+|||+|++. . ++++||||+||++|+|
T Consensus 157 ~~~~~~~~~-~f~~~r~tp~e~r~~f~~~gw~~v~afqtrnP~Hr~He~l~~~a~~~---~---d~~lll~p~~G~~k~~ 229 (568)
T PRK05537 157 TGIQLPVHY-DFVQLRLTPAELRARFRKLGWRRVVAFQTRNPLHRAHEELTKRAARE---V---GANLLIHPVVGMTKPG 229 (568)
T ss_pred EEEecCCCC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCcHHHHHHHHHHHHh---c---CCeEEEecCCCCCCCC
Confidence 999988775 69999999999999999999999999999999999999999887542 2 3589999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCcc
Q 013115 305 DVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDH 384 (449)
Q Consensus 305 Di~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~ 384 (449)
|+|+++|||||+++++ + ||+++++|++||++|||||||||+||||+|||||||||||||||||+|+++++.+|||+|+
T Consensus 230 d~~~~~r~~~~~~~~~-~-~p~~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~ 307 (568)
T PRK05537 230 DIDHFTRVRCYEALLD-K-YPPATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYD 307 (568)
T ss_pred CCCHHHHHHHHHHHHH-h-CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchH
Confidence 9999999999999996 5 9999999999999999999999999999999999999999999999999988899999999
Q ss_pred chhhhhhccCccccccchHH------------------------------HHHHHhCCCCCCCCCCchhHHHHHHHHHHh
Q 013115 385 GKKVLSMALGLEKLNILPFR------------------------------MRTFARSGENPPDGFMCPGGWKVLVQYYES 434 (449)
Q Consensus 385 aq~i~~~~~g~~~l~i~p~~------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y~~ 434 (449)
||+||+++++..+|+|++|+ ||+||++|+.||+|||||||++||+++|++
T Consensus 308 a~~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~~cph~~~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~ 387 (568)
T PRK05537 308 AQELFAKYADEIGITMVPFKEMVYVQDKAQYVPVDEVPQGATVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPP 387 (568)
T ss_pred HHHHHHhCccccCceEEecceeEEEcCCCeEEecCcCCCCcceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhcc
Confidence 99999999876777777776 999999999999999999999999999987
Q ss_pred hhhh
Q 013115 435 LQAE 438 (449)
Q Consensus 435 ~~~~ 438 (449)
-.+.
T Consensus 388 r~~~ 391 (568)
T PRK05537 388 RHKQ 391 (568)
T ss_pred ccCC
Confidence 6544
No 4
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=2.1e-112 Score=865.12 Aligned_cols=323 Identities=44% Similarity=0.732 Sum_probs=305.9
Q ss_pred CCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCC
Q 013115 93 MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGP 172 (449)
Q Consensus 93 Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wpiPItL~V~~e~a~~l~~G~~vaL~d~ 172 (449)
||+|+||+++++|||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|++|.++++++|++|+|+|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~--~~~rL~~G~~--wpiPi~L~v~~e~~~~l~~g~~v~L~~- 75 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVL--EEMRLLDGTL--WPIPIVLDVSEEDAKRLKEGERVALRY- 75 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHH--HhCcCCCCCC--cCeEEEEeCCHHHHhhcCCCCEEEEeE-
Confidence 79999999999999999999999999999999999999 7999999988 899999999999999999999999997
Q ss_pred CCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHh
Q 013115 173 TGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDN 252 (449)
Q Consensus 173 eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~ 252 (449)
+|+++|+|+|+|+|++||++||++||||+|+.||||++++ +.|+|+|||+|++++++.++ +|++||+||+|+|+.|++
T Consensus 76 ~g~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~-~f~~~r~tP~e~R~~f~~ 153 (353)
T cd00517 76 PGQPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFP-DFDQYRLTPAELRALFKE 153 (353)
T ss_pred CCEEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcC-CchhhcCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999987 57999999999999988886 799999999999999999
Q ss_pred CCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 013115 253 RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (449)
Q Consensus 253 ~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ 332 (449)
+||++|||||||||+|||||+|||+|++.+ + +++|||||++|+||+||+|+++|||||+++++ +|+|+++++|+
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~~a~~~~---~--~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~-~y~~~~~~~l~ 227 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMKRAAEKL---L--NDGLLLHPLVGWTKPGDVPDEVRMRAYEALLE-EYYLPERTVLA 227 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHHHHHHHc---C--CCcEEEEeccCCCCCCCCCHHHHHHHHHHHHH-hCCCCCcEEEE
Confidence 999999999999999999999998876532 1 37999999999999999999999999999996 79999999999
Q ss_pred ecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCccccccchHH--------
Q 013115 333 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFR-------- 404 (449)
Q Consensus 333 ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p~~-------- 404 (449)
+||++|||||||||+||||||||||||||||||||||+|++ .+|||+|+||++|+.+++..+|++++|.
T Consensus 228 ~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~---~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c 304 (353)
T cd00517 228 ILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHP---GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPKC 304 (353)
T ss_pred eccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCc---cccCCcchhHHHHHhCcccCCceEEecceeEEecCC
Confidence 99999999999999999999999999999999999999965 6899999999999999654567777766
Q ss_pred ----------------------HHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 405 ----------------------MRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 405 ----------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
||+||++|+.||+|||||||+++|++|
T Consensus 305 ~~~~~~~~cp~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~~ 353 (353)
T cd00517 305 DGMASEDTCPHGEDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLREY 353 (353)
T ss_pred CeEEecccCCCCCceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhhC
Confidence 999999999999999999999999975
No 5
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=1.5e-110 Score=859.52 Aligned_cols=351 Identities=37% Similarity=0.631 Sum_probs=335.0
Q ss_pred CCCccccccccCch-hhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeeccc
Q 013115 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMS 146 (449)
Q Consensus 68 PhGg~lv~l~v~~~-~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wp 146 (449)
||||+|++|+|+++ ++++++++|.+||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++ ||
T Consensus 1 phgg~l~~l~v~~~~~~~~l~~~a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~--~~~rL~~G~~--wp 76 (383)
T TIGR00339 1 PHGGKLVELIVRDPDIEHKLLAEAESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVV--EDMRLSDGVL--FS 76 (383)
T ss_pred CCCCcchhcccCchHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cc
Confidence 89999999999988 6779999999999999999999999999999999999999999999999 7999999998 89
Q ss_pred eeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEE
Q 013115 147 LPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEV 226 (449)
Q Consensus 147 iPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 226 (449)
|||||+|++|++++|++|++|+|+|.+|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|++
T Consensus 77 iPi~L~v~~e~~~~l~~g~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~ 155 (383)
T TIGR00339 77 VPITLDIDDEDADDIKLGDRILLTDDKGQPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEV 155 (383)
T ss_pred eeEEEeCCHHHHhhCCCCCeEEEECCCCCEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEE
Confidence 999999999999999999999999877999999999999999999999999999999999999988 7999999999999
Q ss_pred ecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 013115 227 LKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (449)
Q Consensus 227 l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi 306 (449)
++++.| ++|++||+||+|+|+.|+++||++|||||||||+||||++|++.|++.+ + .+++||+|++|++|+||+
T Consensus 156 l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~~a~e~l---~--~d~lll~P~~g~~k~~~~ 229 (383)
T TIGR00339 156 INLPKF-YDFPRFRFTPAELREEFKERGWDTVVAFQTRNPMHRAHEELTKRAARSL---P--NAGVLVHPLVGLTKPGDI 229 (383)
T ss_pred eecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHHHHHHHc---C--CCeEEEEeCCCCCCCCCC
Confidence 998888 4799999999999999999999999999999999999999998775532 2 478999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccch
Q 013115 307 PLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK 386 (449)
Q Consensus 307 ~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq 386 (449)
++++|++||+++++ +|+++++++++++|++||||||||++||||+|+|||||||||||||||+|+++++++||++|+||
T Consensus 230 ~~~~R~~~~~~~~~-~~~~~~~~~l~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq 308 (383)
T TIGR00339 230 PAEVRMRAYEVLKE-GYPNPERVMLTFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQ 308 (383)
T ss_pred CHHHHHHHHHHHHh-hCCCCCceEEEecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHH
Confidence 99999999999995 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCccccccchHH-------------------------------HHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 387 KVLSMALGLEKLNILPFR-------------------------------MRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 387 ~i~~~~~g~~~l~i~p~~-------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
+||+++++..+|+|+++. ||+||++|+.||+|||||||++||++
T Consensus 309 ~i~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 383 (383)
T TIGR00339 309 ELFEKYKAELGIKIVPFEHVAYCPDEDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILRE 383 (383)
T ss_pred HHHHhCccccCceEEecceeEEEcccCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhC
Confidence 999999876778887777 99999999999999999999999974
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-91 Score=701.30 Aligned_cols=364 Identities=62% Similarity=1.111 Sum_probs=353.3
Q ss_pred ccccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCC-----Ceecc
Q 013115 71 GVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDG-----SIVNM 145 (449)
Q Consensus 71 g~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG-----~~~~w 145 (449)
....+|+|+++....++++|++||++.|++.|++|+++|++||.+||+|||+|.+|.+++||+++ -|| ...|+
T Consensus 230 ~~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrereylq~mhf~~l--ld~khaf~g~in~ 307 (627)
T KOG4238|consen 230 KDVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREYLQVMHFDTL--LDGKHAFDGVINM 307 (627)
T ss_pred HHHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHHHHHhhhhhh--hcccccccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999998765 455 45589
Q ss_pred ceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEE
Q 013115 146 SLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLE 225 (449)
Q Consensus 146 piPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~ 225 (449)
||||+|+++.|++++|....++||. ++|+.+|||+..|+|+++|+++|.+.|||+++.||.|++++ ++|+|+|||++.
T Consensus 308 sipivl~~s~e~k~~leg~t~~al~-y~g~~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~vm-esg~wl~ggdl~ 385 (627)
T KOG4238|consen 308 SIPIVLPVSAEDKTRLEGCTKFALA-YGGRRVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMVM-ESGDWLVGGDLQ 385 (627)
T ss_pred cccEEEecchhhhhccchhHHHHhh-cCCEEEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHHH-hcCCeeeccchh
Confidence 9999999999999999999999998 69999999999999999999999999999999999999987 699999999999
Q ss_pred EecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC
Q 013115 226 VLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD 305 (449)
Q Consensus 226 ~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gD 305 (449)
+++.+.|+|++++||+||.|+|+.|++++.++|+|||.|||+|+||..||++|.+.++|.||++++|||||++||||+||
T Consensus 386 vl~ki~~ndgldqyr~tp~elk~~f~e~nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkddd 465 (627)
T KOG4238|consen 386 VLEKIRWNDGLDQYRLTPLELKQKFKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDD 465 (627)
T ss_pred hheeeeeccchhhhcCCHHHHHHHHHhhCcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccc
Q 013115 306 VPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHG 385 (449)
Q Consensus 306 i~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~a 385 (449)
+|.++||+++.++++++.+.+++++++|||++|.||||.|++|||..|...|++|+|||||+||+.+|..++|+|.|.++
T Consensus 466 vpl~~rmkqh~avl~e~vldpe~tvvaifpspmmyagptevqwh~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thg 545 (627)
T KOG4238|consen 466 VPLDWRMKQHAAVLEEGVLDPESTVVAIFPSPMMYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHG 545 (627)
T ss_pred ccchhhhHHHHHHHHhccCCccceEEEEcCCchhcCCchhhhhhHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCccccccchHH-----------------------------HHHHHhCCCCCCCCCCchhHHHHHHHHHHhhh
Q 013115 386 KKVLSMALGLEKLNILPFR-----------------------------MRTFARSGENPPDGFMCPGGWKVLVQYYESLQ 436 (449)
Q Consensus 386 q~i~~~~~g~~~l~i~p~~-----------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y~~~~ 436 (449)
.++++|+||+..++|+||+ ||++.|+|+.||++||.|..|++|.+||++++
T Consensus 546 akvlsmapgl~~l~i~pfrvaay~k~~k~m~f~d~~~~edfe~isgtrmr~lar~g~~ppegfmap~aw~vlt~yyksle 625 (627)
T KOG4238|consen 546 AKVLSMAPGLTSLEIIPFRVAAYNKAKKAMDFYDPARHEDFEFISGTRMRKLAREGENPPEGFMAPKAWKVLTDYYKSLE 625 (627)
T ss_pred ceeeeecCCcceeeeeeeehhhhhhhhhhccccChhhhcccccccchhHHHHHhcCCCCCccccCchHHHHHHHHHHHhh
Confidence 9999999999999999998 99999999999999999999999999999998
Q ss_pred hh
Q 013115 437 AE 438 (449)
Q Consensus 437 ~~ 438 (449)
++
T Consensus 626 ~~ 627 (627)
T KOG4238|consen 626 KN 627 (627)
T ss_pred cC
Confidence 74
No 7
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=100.00 E-value=7.4e-72 Score=534.50 Aligned_cols=184 Identities=39% Similarity=0.695 Sum_probs=153.9
Q ss_pred cCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHH
Q 013115 236 LDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQH 315 (449)
Q Consensus 236 f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y 315 (449)
|++||+||+|+|+.|+++||++|||||||||+|||||+|++.|++.+ + ++|||||++|++|+||+|+++|++||
T Consensus 1 f~~~r~tP~e~r~~~~~~gw~~VvafqtrnPlHraHe~l~~~a~e~~---~---~~lll~plvG~~k~~d~~~~~r~~~~ 74 (215)
T PF01747_consen 1 FRRYRLTPAETRELFKEKGWRRVVAFQTRNPLHRAHEYLMRRALEKA---G---DGLLLHPLVGPTKPGDIPYEVRVRCY 74 (215)
T ss_dssp TCCTB--HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHHH---T---SEEEEEEBESB-STTSCCHHHHHHHH
T ss_pred CcchhCCHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHh---c---CcEEEEeccCCCCcCCCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999876543 2 79999999999999999999999999
Q ss_pred HHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCc
Q 013115 316 SKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGL 395 (449)
Q Consensus 316 ~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~ 395 (449)
+++++ +|||+++++|+++|++|||||||||+||||||||||||||||||||||+| +|||+|+||+||++++++
T Consensus 75 ~~~~~-~y~p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g------~~Y~~~~a~~i~~~~~~e 147 (215)
T PF01747_consen 75 EALID-NYFPKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DFYDPYEAQEIFDEYAGE 147 (215)
T ss_dssp HHHHH-HCSSTTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SC------BSS-TTHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCcc------ccCCccHHHHHHHcCccc
Confidence 99996 59999999999999999999999999999999999999999999999999 799999999999997766
Q ss_pred cccccchHH-------------------------------HHHHHhCCCCCCCCCCchhHHHHHHHHH
Q 013115 396 EKLNILPFR-------------------------------MRTFARSGENPPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 396 ~~l~i~p~~-------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y 432 (449)
.+|+++++. ||+||++|+.||+|||||||+++|++||
T Consensus 148 l~I~~v~~~~~~Yc~~~~~~~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~~Y 215 (215)
T PF01747_consen 148 LGIEPVPFPEMVYCPKCGQYVSAKTCPHGKHHHISISGTEIRELLREGEEPPEWFMRPEVAAILRRYY 215 (215)
T ss_dssp CTSEEEE---EEEETTTTEEEECGGSSTTTGGGEE--HHHHHHHHHTT----TTTS-HHHHHHHHHHC
T ss_pred CCceEEecceEEEEcCCCeEeeccccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhC
Confidence 677777776 9999999999999999999999999998
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-65 Score=512.64 Aligned_cols=388 Identities=46% Similarity=0.677 Sum_probs=370.9
Q ss_pred cccccCCcCCCCccccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecC
Q 013115 59 SAIKSSLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMK 138 (449)
Q Consensus 59 ~~~~~~~i~PhGg~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~ 138 (449)
+.+++++|.|.||+|++++|++-++...+++++++|.|.|+..|++|...+.+||.|||.|||.+.++.+.+||+..||.
T Consensus 43 lsv~s~li~Pdgg~l~el~v~e~k~~~kkae~~d~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~ 122 (466)
T KOG0636|consen 43 LSVKSGLIIPDGGKLVELFVNEIKRRVKKAEAEDDPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLV 122 (466)
T ss_pred eeccceeeccCCchHHHhhccccchhhhhhhhccCCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeec
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHH-HHHHHhhCCCCCCCcchhhhcccCCc
Q 013115 139 DGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKE-ERIARTWGTTAAGLPYVEEVITPAGN 217 (449)
Q Consensus 139 dG~~~~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~-~ea~~VfGT~d~~HPgV~~~~~~~g~ 217 (449)
||.+.++++||+|+++++++..++...+|+|++.+|.++|+++..++|.++|+ ++|++.|||+-+-||.|.+.....++
T Consensus 123 ~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~d~~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~d 202 (466)
T KOG0636|consen 123 DGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQSDGNPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDID 202 (466)
T ss_pred CceEEEeeccEEEecCcccccccccceeEEEecCCCCeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999998778999
Q ss_pred EEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc
Q 013115 218 WLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL 297 (449)
Q Consensus 218 ~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl 297 (449)
|+++|+++++.+++|+++.+.+++.|.++|.++.+++...+++||.|||.|.+|..++..+.+..++++|+++.+++||+
T Consensus 203 ~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v 282 (466)
T KOG0636|consen 203 HLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLV 282 (466)
T ss_pred ceeeeEEEEEEeeecCCchhhhcCChHHHhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC-chHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCC
Q 013115 298 GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEK 376 (449)
Q Consensus 298 vG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAG-PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~ 376 (449)
.|-||.+|||...||++++..+++ .|.+.+++.+++|.+|.|+| |.|..||+-.|-|-|++..|||||.||+|+|..+
T Consensus 283 ~gytke~dipl~~~m~q~~~~~ED-v~dP~~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~k 361 (466)
T KOG0636|consen 283 EGYTKEDDIPLVPFMMQTYLPDED-VYDPEDTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEK 361 (466)
T ss_pred hhcccccCCcccHHHhhhccchhh-hcCccceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCccc
Confidence 999999999999999999989876 77777788899999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCccc--hhhhhhccCccccccchHH---------------------------HHHHHhCCCCCCCCCCchhHHHH
Q 013115 377 RDLYDPDHG--KKVLSMALGLEKLNILPFR---------------------------MRTFARSGENPPDGFMCPGGWKV 427 (449)
Q Consensus 377 ~~~Yd~~~a--q~i~~~~~g~~~l~i~p~~---------------------------vR~~Lr~G~~pP~~F~rPeV~~i 427 (449)
++||++.++ ++++++.|+++.++|.||+ ||.+.+ +++||+.||+|.+|++
T Consensus 362 q~~~~a~~g~~k~vLsmAp~le~Lni~~~R~aa~~~~~~kmaffd~aQdfl~i~gtkm~~~a~-~edp~dg~~~p~~w~v 440 (466)
T KOG0636|consen 362 QGFYDADHGATKKVLSMAPLLERLNILGFRVAAYDKTQGKMAFFDRAQDFLFIGGTKMRSLAK-LEDPDDGVMCPSGWKV 440 (466)
T ss_pred CCceecCCccchheeccchhhHHhccCCeeEEEEeccCChhhHHHHHHHHhhccceeEeechh-ccCCCcccccCcceEE
Confidence 999999998 8999999999999999998 676666 9999999999999999
Q ss_pred HHHHHHhhh-hhccccCCcccc
Q 013115 428 LVQYYESLQ-AEEATQQPAILT 448 (449)
Q Consensus 428 L~~~y~~~~-~~~~~~~~~~~~ 448 (449)
|.+||.+++ ...+..++++|.
T Consensus 441 lv~~~~dl~~e~~~~~ls~~v~ 462 (466)
T KOG0636|consen 441 LVDYYKDLQSEVGNAVLSELVD 462 (466)
T ss_pred Eecchhhhhhhhcccchhhhhh
Confidence 999999998 667777777763
No 9
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=100.00 E-value=9.2e-54 Score=393.33 Aligned_cols=159 Identities=40% Similarity=0.693 Sum_probs=139.6
Q ss_pred cCCCCc-cccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeec
Q 013115 66 IEPDGG-VLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (449)
Q Consensus 66 i~PhGg-~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~ 144 (449)
|.|||| +|+||+++++++++++++|++||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 1 i~PhGG~~Lv~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~--~~~rL~~G~~-- 76 (160)
T PF14306_consen 1 IEPHGGKKLVNLVVPEDEREELKEEAESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVL--ETMRLPDGTL-- 76 (160)
T ss_dssp ---TTSSS--BHBHHTGGHHHHHHHHTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHH--HHSBETTSSB--
T ss_pred CcCCCCCcccccccCHHHHHHHHHHHhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHH--hhCCcCCCCE--
Confidence 689999 99999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeE
Q 013115 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (449)
Q Consensus 145 wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 224 (449)
|||||||+|+++++++++.|++|+|+|.+|+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|
T Consensus 77 wpiPI~L~v~~e~~~~l~~G~~v~L~~~~G~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i 155 (160)
T PF14306_consen 77 WPIPIVLDVSEEEAKSLKEGDKVALRDPEGKPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKI 155 (160)
T ss_dssp --S---EEECHHHHTTCTTTSEEEEEETTTEEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEE
T ss_pred EeEEEEEECCHHHHHhccCCCEEEEECCCCCEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEE
Confidence 89999999999999999999999999988999999999999999999999999999999999999998 79999999999
Q ss_pred EEecC
Q 013115 225 EVLKP 229 (449)
Q Consensus 225 ~~l~~ 229 (449)
+++++
T Consensus 156 ~~l~~ 160 (160)
T PF14306_consen 156 EVLNR 160 (160)
T ss_dssp EESS-
T ss_pred EEEeC
Confidence 99863
No 10
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=410.78 Aligned_cols=321 Identities=24% Similarity=0.281 Sum_probs=293.6
Q ss_pred CchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEE
Q 013115 99 TKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIG 178 (449)
Q Consensus 99 ~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vA 178 (449)
++.++|+++++.+ +||++||+++.+|.+|. -||++|+. |.+|+.+++.+-.+...+.+.+.++- .+...++
T Consensus 11 tp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~----~~lsv~s~--li~Pdgg~l~el~v~e~k~~~kkae~-~d~p~i~ 81 (466)
T KOG0636|consen 11 TPFQSCPLELILN--SSPLTGFLSENSYSSVV----RRLSVKSG--LIIPDGGKLVELFVNEIKRRVKKAEA-EDDPRIK 81 (466)
T ss_pred CccccCchhhhcc--CCCCcceeccccchhhe----eeeeccce--eeccCCchHHHhhccccchhhhhhhh-ccCCcee
Confidence 7899999999999 99999999999999997 57899998 79999999999888889999999986 4667999
Q ss_pred EEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEec-CCCCCCCcCcCCCCHHHHHHHHHhCCCCe
Q 013115 179 ILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLK-PIKYNDGLDHYRLSPQQLRKEFDNRQADA 257 (449)
Q Consensus 179 iL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~-~~~~~~~f~~~r~tP~E~R~~f~~~gw~~ 257 (449)
+.+|+..|.+.+.++++.+|+ .++.||..-+++.=.+.++++|.++-.+ |+++ +++..+.||.+.+.+++-..|+.
T Consensus 82 l~~vdl~w~hv~segwasplr-Gfmre~e~lqtlhfn~~~l~~GS~vnmslPivl--aidd~~K~~ig~s~~v~l~~~d~ 158 (466)
T KOG0636|consen 82 LNTVDLEWVHVLSEGWASPLR-GFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVL--AIDDDQKTPIGLSLEVQLVQSDG 158 (466)
T ss_pred eeeeeeEEeeecchhhhcccc-CcccchhHHhheeccceeecCceEEEeeccEEE--ecCcccccccccceeEEEecCCC
Confidence 999999999999999999997 4688999998887789999999999999 6666 78999999999999999999999
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~ 337 (449)
+++||+|||+||+|.++.. ++|.+.| +-.++||+||.||++|+++.+|++.|+.... .||.+...++++|++
T Consensus 159 ~~i~~lrn~~~~aH~e~t~---R~Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~--rY~dGl~~~~L~P~a 230 (466)
T KOG0636|consen 159 NPIAILRNPMHRAHRELTV---RAARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPI--RYPDGLARLSLLPLA 230 (466)
T ss_pred CeeeeecCHHhhhchHHHH---HHHHHhC---CccccccccceecCCCCcceeeeEEEEEEee--ecCCchhhhcCChHH
Confidence 9999999999999999944 4556776 7899999999999999999999999997775 789998889999999
Q ss_pred cccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCccccccchHH-------------
Q 013115 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFR------------- 404 (449)
Q Consensus 338 MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p~~------------- 404 (449)
||++|+|||.||||+|||||++|||+||||||+|..+.+.+||+||++|.++..|....++.++|+.
T Consensus 231 mR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~EDv~dP 310 (466)
T KOG0636|consen 231 MRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDEDVYDP 310 (466)
T ss_pred HhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999888666677777776
Q ss_pred ------------------HHHHHhCCCCCCCCCCchhHHHHHHHHHHhhhhhc
Q 013115 405 ------------------MRTFARSGENPPDGFMCPGGWKVLVQYYESLQAEE 439 (449)
Q Consensus 405 ------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y~~~~~~~ 439 (449)
+|++++.|-+||+||++|||.++++..+....|.+
T Consensus 311 ~~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq~ 363 (466)
T KOG0636|consen 311 EDTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQG 363 (466)
T ss_pred cceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccCC
Confidence 89999999999999999999999999887665543
No 11
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.46 E-value=7.5e-07 Score=77.56 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=69.2
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC----CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK----ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK----~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~M 338 (449)
+-||+|+||.+|++.|.+.+ ++.+++.|.....+ ...++.+.|++..+++.+ + +..++++.+
T Consensus 7 ~Fdp~H~GH~~ll~~a~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~------~--~~~v~~~~~ 72 (143)
T cd02039 7 RFEPFHLGHLKLIKEALEEA------LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK------D--RLKVVPVDF 72 (143)
T ss_pred ccCCcCHHHHHHHHHHHHHc------CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc------C--CcEEEEEec
Confidence 89999999999998765432 24566667766554 378999999999998773 1 124445555
Q ss_pred ccCCchHHH-HHHHHHHhcCCcEeeecCCCCC
Q 013115 339 HYAGPTEVQ-WHAKARINAGANFYIVGRDPAG 369 (449)
Q Consensus 339 ryAGPREAl-lHAiiRkNyGcTHfIVGRDHAG 369 (449)
.+..+..+. +.+.+.++++|+++++|.|+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~ 104 (143)
T cd02039 73 PEVKILLAVVFILKILLKVGPDKVVVGEDFAF 104 (143)
T ss_pred ChhhccCHHHHHHHHHHHcCCcEEEECCcccc
Confidence 555666665 7778888999999999999983
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.93 E-value=6.6e-05 Score=76.09 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=98.4
Q ss_pred CCCCcCcCCCCHHHHHH-HHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHH
Q 013115 232 YNDGLDHYRLSPQQLRK-EFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDV 310 (449)
Q Consensus 232 ~~~~f~~~r~tP~E~R~-~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~v 310 (449)
+..+.+..+.+..|+.+ ....+....|++ +-||+|+||..+++.|++.+ +. +.+++-|- +...+|.+.
T Consensus 92 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~--~FDPiH~GHl~ii~~a~~~~-d~----~~V~i~~~----~~~~~~~e~ 160 (297)
T cd02169 92 LENGKPGIEDYLKNLPKPDQPGKKIAAIVM--NANPFTLGHRYLVEKAAAEN-DW----VHLFVVSE----DKSLFSFAD 160 (297)
T ss_pred ecCCchHHHHHHHHHHhhccCCCceEEEEe--cCCCCchHHHHHHHHHHhhC-Ce----EEEEEEcC----CCCCCCHHH
Confidence 33456666677777766 455566677888 99999999999998775521 11 33444342 567899999
Q ss_pred HHHHHHHHHHcCCCCCCceEEEecCCCcccC--------------------CchHHHHHHHHHHhcCCcEeeecCCCCCC
Q 013115 311 RMEQHSKVLEDGVLDPETTIVSIFPSPMHYA--------------------GPTEVQWHAKARINAGANFYIVGRDPAGM 370 (449)
Q Consensus 311 Rvr~y~all~~~ylP~~~~~L~ilP~~MryA--------------------GPREAllHAiiRkNyGcTHfIVGRDHAGv 370 (449)
|++..+..+++ +|.= .+++.-.+..-|+ .|.+ -.+ ++.+.++|.+++||-|+. -
T Consensus 161 R~~ml~~ai~~--~~~v-~v~~~~~l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~-Fi~-iL~~~l~~~~ivvG~Df~-F 234 (297)
T cd02169 161 RFKLVKKGTKH--LKNV-TVHSGGDYIISSATFPSYFIKEQDVVIKAQTALDARI-FRK-YIAPALNITKRYVGEEPF-S 234 (297)
T ss_pred HHHHHHHHhCC--CCCE-EEEecCCeeeccccChhhhcCChhHHHHHHhcCCHHH-HHH-HHHHHcCCcEEEEcCCCC-C
Confidence 99999999963 3431 2222222211111 3443 447 888999999999999986 2
Q ss_pred CCCCCCCCCCCCccchh------hhhhccCccccccchHHHHHHHhCCC
Q 013115 371 GHPTEKRDLYDPDHGKK------VLSMALGLEKLNILPFRMRTFARSGE 413 (449)
Q Consensus 371 G~~~~~~~~Yd~~~aq~------i~~~~~g~~~l~i~p~~vR~~Lr~G~ 413 (449)
|....|...+-.. +++ +.+... ..+..|+-..+|++|++|.
T Consensus 235 G~~r~G~~~l~~~-~~~~gf~v~~v~~~~-~~g~~ISST~IR~~l~~G~ 281 (297)
T cd02169 235 RVTAIYNQTMQEE-LLSPAIEVIEIERKK-YDGQPISASTVRQLLKEGN 281 (297)
T ss_pred CCcchhHHHHHHh-cccCCCEEEEecccc-cCCcEEcHHHHHHHHHcCC
Confidence 2111111111111 110 011111 2345677777999999997
No 13
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=97.17 E-value=0.012 Score=55.66 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=85.5
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcc-c--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP-L--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhP-l--vG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-||+|.||..+++.|.+ .. +-+.|-+ - .-.++..-++.+.|++-.+..+.+.=++.+++ .+.|.+=.
T Consensus 7 rF~P~H~GHl~~i~~a~~----~~---~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv--~i~pi~D~ 77 (181)
T cd02168 7 RFQPFHNGHLAVVLIALE----KA---KKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARV--HFRPLRDH 77 (181)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceE--EEEecCCC
Confidence 678999999999876543 31 2333311 1 12356677999999999998876433455544 55554332
Q ss_pred cCCchHHHHHHHHHHh----cCC--cEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc--cCcccc-ccchHHHHHHHh
Q 013115 340 YAGPTEVQWHAKARIN----AGA--NFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA--LGLEKL-NILPFRMRTFAR 410 (449)
Q Consensus 340 yAGPREAllHAiiRkN----yGc--THfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~--~g~~~l-~i~p~~vR~~Lr 410 (449)
. ..+..|-+-+++. +|- +-.++|.|- ++..||- ++|... -....+ +|+...+|+++.
T Consensus 78 -~-~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~k-------d~~~~~~-----~lfpe~~~~~~p~~~~iSsT~IR~~i~ 143 (181)
T cd02168 78 -L-YSDNLWLAEVQQQVLEIAGGSASVGLVGHRK-------DASSYYL-----RSFPQWDYLEVPNYPDLNATDIRRAYF 143 (181)
T ss_pred -C-CChHHHHHHHHHhChHhhCCCCcEEEeCCcc-------CCCccce-----eecCCcCeecCccccccCHHHHHHHHH
Confidence 1 3577898666533 222 112334332 1223443 222221 011223 578888999999
Q ss_pred CC-CCCCCCCCchhHHHHHHHH
Q 013115 411 SG-ENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 411 ~G-~~pP~~F~rPeV~~iL~~~ 431 (449)
+| ........+|.|++.|.+.
T Consensus 144 ~~~g~~~~~lvP~~V~~~I~~~ 165 (181)
T cd02168 144 EGKEAMYRAALPAGVYDFLTAF 165 (181)
T ss_pred hcCCCChhHhCCHHHHHHHHHh
Confidence 95 2345567889999988766
No 14
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=97.14 E-value=0.0052 Score=58.23 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=64.2
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE----E
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI----V 331 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~----L 331 (449)
.+||. +.||+|+||..+++.+.+.+ + .+.+++-|- +..-++.+.|++..+.++++ +|+=.++ +
T Consensus 2 ~~~~~--~~DPiH~GHl~i~~~a~~~~-d----~~~V~v~p~----~~~~~s~e~R~~Mi~~a~~~--~~~v~v~~~~~~ 68 (182)
T smart00764 2 AAIVM--NANPFTLGHRYLVEQAAAEC-D----WVHLFVVSE----DASLFSFDERFALVKKGTKD--LDNVTVHSGSDY 68 (182)
T ss_pred ceEEE--CCCCCCHHHHHHHHHHHHHC-C----ceEEEEEeC----CCCCCCHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 46788 99999999999988765422 1 233444343 56688999999999999863 2421110 2
Q ss_pred EecC--CCccc-----------C--CchHHHHHHHHHHhcCCcEeeecCCCC
Q 013115 332 SIFP--SPMHY-----------A--GPTEVQWHAKARINAGANFYIVGRDPA 368 (449)
Q Consensus 332 ~ilP--~~Mry-----------A--GPREAllHAiiRkNyGcTHfIVGRDHA 368 (449)
.+.| .+-.| | .|.+=+ + ++.+.+++.|++||.|+.
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi-~-~L~~~l~~~~ivvG~df~ 118 (182)
T smart00764 69 IISRATFPSYFLKEQDVVIKSQTTLDLRIFR-K-YIAPALGITHRYVGEEPF 118 (182)
T ss_pred eeccccChhhhcCchhHHHHHHhcCCHHHHH-H-HHHHHcCceEEEEcCCCC
Confidence 3333 22223 2 444433 5 578889999999999976
No 15
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=97.05 E-value=0.0073 Score=56.76 Aligned_cols=147 Identities=21% Similarity=0.258 Sum_probs=88.1
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~t-K-~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mry 340 (449)
|-||+|.||..+++.|.+.+ + .+-+++-|-.... | ....+.+.|++-.+.+++ ..| + +.+-+...+-
T Consensus 7 sFdP~H~GH~~~~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~--~~~-~---i~v~~~e~~~ 75 (192)
T cd02165 7 SFDPPHLGHLAIAEEALEEL---G--LDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIE--DNP-K---FEVSDIEIKR 75 (192)
T ss_pred CCCCCCHHHHHHHHHHHHHc---C--CCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHc--CCC-C---EEEeHHHHhC
Confidence 78999999999987664422 1 1344544544332 2 378999999999998885 222 2 3555566556
Q ss_pred CCchHHH--HHHHHHHhcC-Cc-EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------cC---------------
Q 013115 341 AGPTEVQ--WHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------LG--------------- 394 (449)
Q Consensus 341 AGPREAl--lHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~g--------------- 394 (449)
.||.-.+ +-.+ ++.|+ +. .||+|-|---=- ..+|+. +++++.+ +|
T Consensus 76 ~~~~~t~~tl~~l-~~~~p~~~~~~liG~D~l~~~-----~~W~~~---~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~ 146 (192)
T cd02165 76 DGPSYTIDTLEEL-RERYPNAELYFIIGSDNLIRL-----PKWYDW---EELLSLVHLVVAPRPGYPIEDASLEKLLLPG 146 (192)
T ss_pred CCCCCHHHHHHHH-HHhccCCCEEEEEcHHHhhhc-----ccccCH---HHHHHhCcEEEEeCCCCCcccchhhhhccCC
Confidence 6665543 2233 34454 44 577787743110 012222 3333321 11
Q ss_pred -------ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 395 -------LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 395 -------~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
.....|+-..+|+.+++|+.+. .+..|+|.+.+.+
T Consensus 147 ~~~~~~~~~~~~iSST~IR~~~~~g~~~~-~lvp~~V~~yI~~ 188 (192)
T cd02165 147 GRIILLDNPLLNISSTEIRERLKNGKSIR-YLLPPAVADYIKE 188 (192)
T ss_pred CcEEEecCCccccCHHHHHHHHHcCCChh-HhCCHHHHHHHHH
Confidence 1123456666999999997654 7899999988765
No 16
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=96.78 E-value=0.018 Score=53.37 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=84.3
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLh-PlvG--~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-||+|.||..+++.|.+ .. +-|++- |-.. .++..-++.+.|++-.+..+.+.-++.+++.+ .|.+=.
T Consensus 7 ~FdP~H~GHl~~i~~a~~----~~---d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v--~~~~d~ 77 (163)
T cd02166 7 RFQPFHLGHLKVIKWILE----EV---DELIIGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYI--IPVPDI 77 (163)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEE--EecCCC
Confidence 678999999999876643 32 444441 1111 12345578899999999777643245555544 454322
Q ss_pred cCCchHHHHHHHHHHhcC-CcEeeecCCCCCCCCCCCCCCCCCCc---cchhhhhhccCccccccchHHHHHHHhCCCCC
Q 013115 340 YAGPTEVQWHAKARINAG-ANFYIVGRDPAGMGHPTEKRDLYDPD---HGKKVLSMALGLEKLNILPFRMRTFARSGENP 415 (449)
Q Consensus 340 yAGPREAllHAiiRkNyG-cTHfIVGRDHAGvG~~~~~~~~Yd~~---~aq~i~~~~~g~~~l~i~p~~vR~~Lr~G~~p 415 (449)
+ ....|-+-++.... ++.+++|++ ||... .+.. ....|-...-+|+...+|+++.+|+..
T Consensus 78 ~---~~~~w~~~v~~~vp~~div~~g~~------------~~~~~f~~~g~~-v~~~p~~~~~~~s~t~iR~~~~~~~~~ 141 (163)
T cd02166 78 E---RNSLWVSYVESLTPPFDVVYSGNP------------LVARLFKEAGYE-VRRPPMFNREEYSGTEIRRLMLGGEDW 141 (163)
T ss_pred C---chHHHHHHHHHHCCCCCEEEECch------------HHHHhhhhcCCe-EecCCcccCCCCCHHHHHHHHHcCCch
Confidence 3 35678888876665 555666642 33311 0111 111221112246777899999887665
Q ss_pred CCCCCchhHHHHHHHH
Q 013115 416 PDGFMCPGGWKVLVQY 431 (449)
Q Consensus 416 P~~F~rPeV~~iL~~~ 431 (449)
-. +..|+|++.|.++
T Consensus 142 ~~-~vp~~v~~~l~~~ 156 (163)
T cd02166 142 EE-LVPKSVAEVIKEI 156 (163)
T ss_pred hh-cCCHHHHHHHHHc
Confidence 43 3789998888664
No 17
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=96.72 E-value=0.036 Score=57.11 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=90.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc---CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv---G~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-||+|.||..+++.+. +.. +-++|-|-. -.++.+-++++.|++-.+..++ + ++..++ .++|..=.
T Consensus 14 ~F~P~H~GHl~~i~~a~----~~~---d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~-~-~~~~r~--~~~pi~d~ 82 (340)
T PRK05379 14 RFQPFHNGHLAVIREAL----SRA---KKVIVLIGSADLARSIKNPFSFEERAQMIRAALA-G-IDLARV--TIRPLRDS 82 (340)
T ss_pred ccCCCCHHHHHHHHHHH----HHC---CEEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhh-c-CCCceE--EEEECCCC
Confidence 77899999999987654 332 445553321 1356677999999999999986 3 455544 55554332
Q ss_pred cCCchHHHHHHHHHHhc------CCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc---cCccccccchHHHHHHHh
Q 013115 340 YAGPTEVQWHAKARINA------GANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA---LGLEKLNILPFRMRTFAR 410 (449)
Q Consensus 340 yAGPREAllHAiiRkNy------GcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~---~g~~~l~i~p~~vR~~Lr 410 (449)
. .++..|-+-+++.- ..+-.++|.|-.+ ..||- ++|.+. +-...-+++...+|+++.
T Consensus 83 ~--~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~-------~~~~~-----~~f~~~~~~~~~~~~~~s~T~iR~~~~ 148 (340)
T PRK05379 83 L--YNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA-------SSYYL-----RSFPQWELVDVPNTEDLSATEIRDAYF 148 (340)
T ss_pred C--cChHHHHHHHHHHHHhccCCCCcEEEECCcCCC-------ChHHH-----HhccccccccCCcccccCccHHHHHHH
Confidence 1 35778888876422 3333444544311 12332 233221 001233467778999999
Q ss_pred CCCCCCCC--CCchhHHHHHHHH
Q 013115 411 SGENPPDG--FMCPGGWKVLVQY 431 (449)
Q Consensus 411 ~G~~pP~~--F~rPeV~~iL~~~ 431 (449)
+|+....| ..+|+|++.|.++
T Consensus 149 ~~~~~~~~~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 149 EGRISSFYGWAVPAPVYAFLEAF 171 (340)
T ss_pred cCCCchhhhhcCCHHHHHHHHHh
Confidence 99986665 7999999998876
No 18
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=96.69 E-value=0.018 Score=52.66 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=79.9
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAG 342 (449)
|-||+|.||..+.+.|.+ .. +-+++=|..-..|..-++.+.|++-.+.++++ .|. . .+.+..
T Consensus 7 sFdP~H~GHl~l~~~a~~----~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~--~~~--~--~v~~~e----- 68 (153)
T cd02163 7 SFDPITNGHLDIIERASK----LF---DEVIVAVAVNPSKKPLFSLEERVELIREATKH--LPN--V--EVDGFD----- 68 (153)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHcC--CCC--E--EecCCc-----
Confidence 789999999999876643 32 44544455444466679999999999988852 332 2 333321
Q ss_pred chHHHHHHHHHHhcCCcEeeecCCCC----CCC----CCCCCCCCCCCccchhhhhhccCcccc-ccchHHHHHHHhCCC
Q 013115 343 PTEVQWHAKARINAGANFYIVGRDPA----GMG----HPTEKRDLYDPDHGKKVLSMALGLEKL-NILPFRMRTFARSGE 413 (449)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRDHA----GvG----~~~~~~~~Yd~~~aq~i~~~~~g~~~l-~i~p~~vR~~Lr~G~ 413 (449)
-+-.-.-+-+++.+||.|-|-- +.- ...++. ... ..++ +.....+ .|+-..+|+++++|+
T Consensus 69 ----s~t~~~l~~l~~~~~i~G~d~~~~~e~~~~~~~~~r~~~---~~~--~~i~--~~~~~~~~~iSST~IR~~~~~g~ 137 (153)
T cd02163 69 ----GLLVDFARKHGANVIVRGLRAVSDFEYEFQMAGMNRKLA---PEI--ETVF--LMASPEYSFISSSLVKEIARFGG 137 (153)
T ss_pred ----chHHHHHHHcCCCEEEECCcchhhHHHHHHHHHhCCCCC---CCC--cEEE--EeCCCccceecHHHHHHHHHcCC
Confidence 1112223577999999994411 000 000000 000 0010 0111233 478888999999997
Q ss_pred CCCCCCCchhHHHHHH
Q 013115 414 NPPDGFMCPGGWKVLV 429 (449)
Q Consensus 414 ~pP~~F~rPeV~~iL~ 429 (449)
. ...+.++.|++-+.
T Consensus 138 ~-i~~lvP~~V~~yI~ 152 (153)
T cd02163 138 D-VSGFVPPVVAKALK 152 (153)
T ss_pred C-hhHhCCHHHHHHHh
Confidence 5 46788888887664
No 19
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=96.68 E-value=0.038 Score=50.63 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=81.9
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAG 342 (449)
|-||+|.||..+.+.|. +.. +-+++-|..-+.|...++.+.|++-.+.++.+ +| + . .+.+.. +
T Consensus 7 sFdP~H~GHl~l~~~a~----~~~---d~v~~~~~~~p~k~~~~~~~~R~~m~~~a~~~--~~-~-~--~v~~~e----~ 69 (155)
T TIGR01510 7 SFDPVTNGHLDIIKRAA----ALF---DEVIVAVAKNPSKKPLFSLEERVELIKDATKH--LP-N-V--RVDVFD----G 69 (155)
T ss_pred ecCCCcHHHHHHHHHHH----HhC---CEEEEEEcCCCCCCCCcCHHHHHHHHHHHHhh--CC-C-e--EEcCcc----c
Confidence 88999999999987654 332 44555465445566789999999999988852 34 2 2 333333 1
Q ss_pred chHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC--CCCc---cchhhhhhccCcccc-ccchHHHHHHHhCCCCCC
Q 013115 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL--YDPD---HGKKVLSMALGLEKL-NILPFRMRTFARSGENPP 416 (449)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~--Yd~~---~aq~i~~~~~g~~~l-~i~p~~vR~~Lr~G~~pP 416 (449)
+-.=.-+-+...+||.|-|.--=-.. -..+ +... ....++ ......+ .|+-..+|++++.|+. .
T Consensus 70 -----yt~dt~~~l~~~~~i~G~~~~~~~~~--~~~~~~~~r~~~~~~~~i~--~~~~~~~~~iSST~IR~~i~~g~~-~ 139 (155)
T TIGR01510 70 -----LLVDYAKELGATFIVRGLRAATDFEY--ELQMALMNKHLAPEIETVF--LMASPEYAFVSSSLVKEIASFGGD-V 139 (155)
T ss_pred -----hHHHHHHHcCCCEEEecCcchhhHHH--HHHHHhhCcccccCCcEEE--EeCCcchhhccHHHHHHHHHcCCC-h
Confidence 11122345567889988442200000 0000 0000 000010 0011123 6778889999999975 5
Q ss_pred CCCCchhHHHHHHH
Q 013115 417 DGFMCPGGWKVLVQ 430 (449)
Q Consensus 417 ~~F~rPeV~~iL~~ 430 (449)
..+.+|+|++-+.+
T Consensus 140 ~~lvP~~V~~YI~~ 153 (155)
T TIGR01510 140 SNLVPPAVARRLKA 153 (155)
T ss_pred hHHCCHHHHHHHHH
Confidence 77999999988765
No 20
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=96.60 E-value=0.058 Score=49.65 Aligned_cols=146 Identities=20% Similarity=0.125 Sum_probs=85.6
Q ss_pred ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 013115 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (449)
Q Consensus 262 QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryA 341 (449)
=|-||+|.||..+.+.|. +.+ +-+++-|..-..|...++.+.|++-.+..++ .+|. +.+..+ . -|
T Consensus 8 GsFdP~H~GHl~~~~~a~----~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~~--v~v~~~--e-~~- 72 (159)
T PRK00168 8 GSFDPITNGHLDIIERAS----RLF---DEVIVAVAINPSKKPLFSLEERVELIREATA--HLPN--VEVVSF--D-GL- 72 (159)
T ss_pred eecCCCCHHHHHHHHHHH----HHC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHc--CCCC--EEEecC--C-cc-
Confidence 489999999999986553 443 4455534333346678999999999998785 3332 323332 2 11
Q ss_pred CchHHHHHHHHHHhcCCcEeeecCC----CCCCCCC-CCCCCCCCCccchhhhhhccCccccccchHHHHHHHhCCCCCC
Q 013115 342 GPTEVQWHAKARINAGANFYIVGRD----PAGMGHP-TEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTFARSGENPP 416 (449)
Q Consensus 342 GPREAllHAiiRkNyGcTHfIVGRD----HAGvG~~-~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p~~vR~~Lr~G~~pP 416 (449)
. .-.-+-+++++|+.|=| .-..-.. .-.+.-++. ...++-. ....-+.|+-..+|++++.|+ +.
T Consensus 73 -t------~~~~~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~--~~~i~~~-~~~~~~~ISST~IR~~i~~g~-~i 141 (159)
T PRK00168 73 -L------VDFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPE--IETVFLM-PSPEYSFISSSLVKEVARLGG-DV 141 (159)
T ss_pred -H------HHHHHHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCC--CcEEEEe-CCCCcceecHHHHHHHHHcCC-Ch
Confidence 1 11235678999998833 1110000 000000000 1111110 111124688888999999997 57
Q ss_pred CCCCchhHHHHHHHHHH
Q 013115 417 DGFMCPGGWKVLVQYYE 433 (449)
Q Consensus 417 ~~F~rPeV~~iL~~~y~ 433 (449)
..|.+++|++.+.+.++
T Consensus 142 ~~lVP~~V~~yI~~~~~ 158 (159)
T PRK00168 142 SGFVPPAVAKALKEKFA 158 (159)
T ss_pred hHHCCHHHHHHHHHHhc
Confidence 89999999999988765
No 21
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=96.46 E-value=0.015 Score=54.32 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=80.0
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC----CCC--CCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG----FTK--ADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG----~tK--~gDi~~~vRvr~y~all~~~ylP~~~~~L 331 (449)
|+++=+-+++|+||..|++.|.+.+-+.++....+...|... ..+ .--.+.+.|++-.+.+- =+ . +
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~------vd-~-v 73 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG------VD-Y-L 73 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC------CC-E-E
Confidence 455568999999999999988776554433323343344321 112 23467888988666431 12 1 3
Q ss_pred EecCCCcccCC-chHHHHHHHHHHhcCCcEeeecCCCC-CCCCCCCCCCCCCCccchhhhhhc-------c--Ccccccc
Q 013115 332 SIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMA-------L--GLEKLNI 400 (449)
Q Consensus 332 ~ilP~~MryAG-PREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~-------~--g~~~l~i 400 (449)
.++|....++. +-|....-++-+. ++.+++||-|+. |-.. -.+...-++.+..+ + ...+..|
T Consensus 74 ~~~~f~~~~~~~s~~~Fi~~il~~~-~~~~ivvG~Df~FG~~~------~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~i 146 (180)
T cd02064 74 LVLPFDKEFASLSAEEFVEDLLVKL-NAKHVVVGFDFRFGKGR------SGDAELLKELGKKYGFEVTVVPPVTLDGERV 146 (180)
T ss_pred EEeCCCHHHHcCCHHHHHHHHHhhc-CCeEEEEccCCCCCCCC------CCCHHHHHHhhhhcCcEEEEeCcEecCCcEE
Confidence 55565544442 2244555555444 999999999987 3221 11111112222211 1 0123567
Q ss_pred chHHHHHHHhCCC
Q 013115 401 LPFRMRTFARSGE 413 (449)
Q Consensus 401 ~p~~vR~~Lr~G~ 413 (449)
+-..+|+++++|.
T Consensus 147 SST~IR~~i~~G~ 159 (180)
T cd02064 147 SSTRIREALAEGD 159 (180)
T ss_pred cHHHHHHHHHhCC
Confidence 7777999999996
No 22
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=96.42 E-value=0.05 Score=51.38 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=87.7
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~t-K--~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
|-||+|.||..+.+.|++.+ + .+.+++-|..... | ..-++.+.|++-.+.++++ .|. +.+-....+
T Consensus 5 sFdP~H~GHl~l~~~a~~~~---~--~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~--~~~----~~v~~~E~~ 73 (193)
T TIGR00482 5 SFDPIHYGHLLLAEEALDHL---D--LDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED--NPK----FEVDDFEIK 73 (193)
T ss_pred cCCccCHHHHHHHHHHHHHc---C--CCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCC----EEEeHHHHh
Confidence 78999999999987664422 1 2344443543321 3 2448999999999988863 232 345555666
Q ss_pred cCCchHHH-HHHHHHHhcC-Cc-EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------cC---------------
Q 013115 340 YAGPTEVQ-WHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------LG--------------- 394 (449)
Q Consensus 340 yAGPREAl-lHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~g--------------- 394 (449)
-.||.=.+ --..+|+.|. +. .||+|-|-.---. .+| +.+++++.+ +|
T Consensus 74 ~~~~syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~-----~W~---~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~ 145 (193)
T TIGR00482 74 RGGPSYTIDTLKHLKKKYPDVELYFIIGADALRSFP-----LWK---DWQELLELVHLVIVPRPGYTLDKALLEKAILRM 145 (193)
T ss_pred CCCCCCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhc-----ccc---CHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcc
Confidence 66662221 1233455564 33 5788887653211 111 223333321 11
Q ss_pred ---------ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 395 ---------LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 395 ---------~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
...+.|+-..+|+++++|+.+. .+.+|+|.+-+.+.
T Consensus 146 ~~~~i~~~~~~~~~iSST~IR~~l~~g~~~~-~lvP~~V~~YI~~~ 190 (193)
T TIGR00482 146 HHGNLTLLHNPRVPISSTEIRQRIRQGKSIE-YLLPDPVIKYIKQH 190 (193)
T ss_pred cCCcEEEEcCCccccCHHHHHHHHHcCCCch-hhCCHHHHHHHHHh
Confidence 1124566666999999998754 67889999887753
No 23
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=96.37 E-value=0.046 Score=51.97 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=83.7
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK-~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryA 341 (449)
+-||+|.||..|.+.|++ ..+.....++..|.--.++ ...++.+.|++-.+.++++ .|. +.+-+....-.
T Consensus 12 sFdP~H~GH~~l~~~a~~---~~~~d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~~----~~v~~~E~~~~ 82 (203)
T PRK00071 12 TFDPPHYGHLAIAEEAAE---RLGLDEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD--NPR----FSVSDIELERP 82 (203)
T ss_pred CCCccCHHHHHHHHHHHH---HcCCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC--CCc----eEEeHHHHhCC
Confidence 899999999999876643 2221221233333221122 3678999999999988862 332 24444333334
Q ss_pred CchHHHH-HHHHHHhcCCc--EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------cC-----------------
Q 013115 342 GPTEVQW-HAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------LG----------------- 394 (449)
Q Consensus 342 GPREAll-HAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~g----------------- 394 (449)
||.=.+- =..+++.|... .||+|-|--- +|-.-++.++|++.+ +|
T Consensus 83 ~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~--------~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~ 154 (203)
T PRK00071 83 GPSYTIDTLRELRARYPDVELVFIIGADALA--------QLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLLEA 154 (203)
T ss_pred CCCCHHHHHHHHHHHCCCCcEEEEEcHHHhh--------hcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhhcc
Confidence 4432221 01234445332 4777887321 111112233333321 11
Q ss_pred --------ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 395 --------LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 395 --------~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
...+.|+-..+|+++++|+.+ ..+..|+|.+-+.+.
T Consensus 155 ~~~i~~~~~~~~~ISST~IR~~l~~g~~~-~~lvp~~V~~YI~~~ 198 (203)
T PRK00071 155 AGAITLLDVPLLAISSTAIRERIKEGRPI-RYLLPEAVLDYIEKH 198 (203)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHcCCCh-hHhCCHHHHHHHHHh
Confidence 112456666699999999864 678999999988763
No 24
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=96.24 E-value=0.07 Score=49.95 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=85.7
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLh-PlvG--~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-||+|.||..+++.|.+ . ++-|.|- |-.. .++...++++.|++-.+..++ ..+ +.. +.++|.+-.
T Consensus 7 ~FdP~H~GHl~ii~~a~~----~---~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~--~~~-~~~-~~~vP~~d~ 75 (165)
T TIGR01527 7 RFQPFHLGHLEVIKKIAE----E---VDELIIGIGSAQESHTLENPFTAGERILMITQSLK--EVG-DLT-YYIIPIEDI 75 (165)
T ss_pred ccCCCCHHHHHHHHHHHH----H---CCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHh--cCC-Cce-EEEEecCCc
Confidence 678999999999876543 3 2445541 2211 123567889999999977775 333 222 356665322
Q ss_pred cCCchHHHHHHHHHHhcC-CcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------cCccccccchHHHHHHHhC
Q 013115 340 YAGPTEVQWHAKARINAG-ANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------LGLEKLNILPFRMRTFARS 411 (449)
Q Consensus 340 yAGPREAllHAiiRkNyG-cTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~g~~~l~i~p~~vR~~Lr~ 411 (449)
.....|-+.++.-.. .+.+..| ...-+++|+.. |-...-+++...+|+++.+
T Consensus 76 ---~~~~~w~~~v~~~~p~~D~vf~~-----------------~~~~~~~f~e~g~~v~~~p~~~r~~~S~T~IR~~i~~ 135 (165)
T TIGR01527 76 ---ERNSIWVSYVESMTPPFDVVYSN-----------------NPLVRRLFKEAGYEVKRPPMFNRKEYSGTEIRRRMLN 135 (165)
T ss_pred ---cHHHHHHHHHHHhCCCCCEEEEC-----------------CHHHHHHHHHcCCEEEECCCcCCCcccHHHHHHHHHc
Confidence 357789988885443 1222222 11124555543 2111225677779999999
Q ss_pred CCCCCCCCCchhHHHHHHHH
Q 013115 412 GENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 412 G~~pP~~F~rPeV~~iL~~~ 431 (449)
|++ =+.+-+|.|+++|.+.
T Consensus 136 ~~~-W~~lVP~~v~~~i~~i 154 (165)
T TIGR01527 136 GED-WEHLVPKAVADVIKEI 154 (165)
T ss_pred CCC-hhhhCCHHHHHHHHHc
Confidence 977 6678899999999874
No 25
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=96.07 E-value=0.13 Score=51.07 Aligned_cols=99 Identities=27% Similarity=0.326 Sum_probs=61.6
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv-G~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryA 341 (449)
|-||+|.||..+.+.+.+. .+ -+-+++-|.. .+.|....+.+.|++-.+.++++.-.+ + .-+.+-.....-.
T Consensus 30 SFdPiH~GHl~ia~~~~~~---l~--ld~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~-~-~~~~v~~~Ei~~~ 102 (243)
T PRK06973 30 TFDPIHDGHLALARRFADV---LD--LTELVLIPAGQPWQKADVSAAEHRLAMTRAAAASLVLP-G-VTVRVATDEIEHA 102 (243)
T ss_pred CCCCCcHHHHHHHHHHHHH---cC--CCEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHhccCC-C-ceEEEeHhhhhCC
Confidence 8999999999997765442 22 1334444653 344566789999999999888631112 1 1245556665567
Q ss_pred CchHHHH-HHHHHHhcC--Cc-EeeecCCCC
Q 013115 342 GPTEVQW-HAKARINAG--AN-FYIVGRDPA 368 (449)
Q Consensus 342 GPREAll-HAiiRkNyG--cT-HfIVGRDHA 368 (449)
||.=.+- =..+++.|| +. .||+|-|..
T Consensus 103 g~syTidTL~~l~~~~~p~~~~~fiiG~D~l 133 (243)
T PRK06973 103 GPTYTVDTLARWRERIGPDASLALLIGADQL 133 (243)
T ss_pred CCCcHHHHHHHHHHHcCCCCCEEEEEchhhH
Confidence 7765441 134566673 43 688898754
No 26
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=95.91 E-value=0.094 Score=49.35 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=82.6
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc---cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL---GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl---vG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-||+|.||..+++.|++ . ++-+++-+- -..++...++.+.|++-.+..+.+.-.+.++ +.++|.+-.
T Consensus 8 ~F~P~H~GHl~~i~~a~~----~---~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~--~~~~pi~D~ 78 (174)
T PRK01153 8 RFQPFHKGHLEVIKWILE----E---VDELIIGIGSAQESHTLKNPFTAGERILMIRKALEEEGIDLSR--YYIIPIPDI 78 (174)
T ss_pred ccCCCCHHHHHHHHHHHH----h---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcce--eeEecCCCc
Confidence 678999999999876644 2 344544221 1123556789999999999888633333333 355554322
Q ss_pred cCCchHHHHHHHHHHhcCCc-EeeecCCCCCCCCCCCCCCCCCCc---cchhhhhhccCccccccchHHHHHHHhCCCCC
Q 013115 340 YAGPTEVQWHAKARINAGAN-FYIVGRDPAGMGHPTEKRDLYDPD---HGKKVLSMALGLEKLNILPFRMRTFARSGENP 415 (449)
Q Consensus 340 yAGPREAllHAiiRkNyGcT-HfIVGRDHAGvG~~~~~~~~Yd~~---~aq~i~~~~~g~~~l~i~p~~vR~~Lr~G~~p 415 (449)
..+..|-+-+++--..- ..+.| + .||... .+-++.. .|-...=+|+...+|+++.+|...
T Consensus 79 ---~~~~~w~~~v~~~~~~~d~v~~~-~-----------~y~~~~f~~~g~~v~~-~p~~~~~~iSsT~IR~~i~~g~~w 142 (174)
T PRK01153 79 ---EFNSIWVSHVESYTPPFDVVYTG-N-----------PLVARLFREAGYEVRQ-PPMFNREEYSGTEIRRRMIEGDPW 142 (174)
T ss_pred ---chHHHHHHHHHHhCCCCCEEEEC-C-----------hHHHHhchhhCCeEec-CCccccCCCCHHHHHHHHHcCCch
Confidence 25778988886655432 22223 1 233221 0001110 110011256677899999999853
Q ss_pred CCCCCchhHHHHHHHH
Q 013115 416 PDGFMCPGGWKVLVQY 431 (449)
Q Consensus 416 P~~F~rPeV~~iL~~~ 431 (449)
.. .-.|+|++.|.++
T Consensus 143 ~~-~VPp~V~~~i~~~ 157 (174)
T PRK01153 143 EE-LVPKSVAEVIKEI 157 (174)
T ss_pred hh-hCCHHHHHHHHHh
Confidence 22 3778898887765
No 27
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=95.88 E-value=0.07 Score=50.01 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=87.2
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc-
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY- 340 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mry- 340 (449)
|-||+|.||..+.+. +. + -+-+++-|-.. ..+..-++.+.|++-.+.++++ +=.++ . .+-....+-
T Consensus 10 SFDP~H~GHl~ia~~----~~--~--~d~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~~-~~~~~-~--~v~~~E~~~~ 77 (174)
T PRK08887 10 AFNPPSLGHKSVIES----LS--H--FDLVLLVPSIAHAWGKTMLDYETRCQLVDAFIQD-LGLSN-V--QRSDIEQELY 77 (174)
T ss_pred CCCCCCHHHHHHHHH----hh--c--CCEEEEEECCCCcccCCCCCHHHHHHHHHHHHhc-cCCCc-e--EEehHHhhhc
Confidence 799999999999754 21 1 13344446542 2233778999999999988863 21122 2 333333332
Q ss_pred --CCchH--HHHHHHHHHhcC-Cc-EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc---cCccccccchHHHHHHHhC
Q 013115 341 --AGPTE--VQWHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA---LGLEKLNILPFRMRTFARS 411 (449)
Q Consensus 341 --AGPRE--AllHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~---~g~~~l~i~p~~vR~~Lr~ 411 (449)
.||.= ..+-.+ ++.|. +. .||+|-|-.-=-. .+| ++++|++.+ .....+.|+-..+|++++.
T Consensus 78 ~~~~~~yT~~tl~~l-~~~~p~~~~~~iiG~D~l~~l~-----~W~---~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~ 148 (174)
T PRK08887 78 APDESVTTYALLTRL-QELYPEADLTFVIGPDNFLKFA-----KFY---KADEITQRWTVMACPEKVPIRSTDIRNALQN 148 (174)
T ss_pred cCCCCcchHHHHHHH-HHHCCCCeEEEEEccchHHHHH-----HhC---CHHHHHhhCeEEEeCCCCCcCHHHHHHHHHc
Confidence 33321 122222 33353 22 2788988652211 123 356666553 1112467888889999999
Q ss_pred CCCCCCCCCchhHHHHHHH
Q 013115 412 GENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 412 G~~pP~~F~rPeV~~iL~~ 430 (449)
|..+. .+..++|.+-+.+
T Consensus 149 g~~i~-~lvp~~V~~yI~~ 166 (174)
T PRK08887 149 GKDIS-HLTTPGVARLLKE 166 (174)
T ss_pred CCChh-HhCCHHHHHHHHH
Confidence 99866 7899999998876
No 28
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=95.36 E-value=0.11 Score=50.06 Aligned_cols=140 Identities=11% Similarity=0.095 Sum_probs=82.5
Q ss_pred CCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 265 NPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 265 NPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-----~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+|+|.||.+.++.|++ . ++-+.| .+| .+..+-+.+.-|+.-....+++. ...+ +-++|..=.
T Consensus 14 QPfH~GHl~~I~~al~----~---~devII--~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~--~~~r--v~~ipi~D~ 80 (196)
T PRK13793 14 QPFHLAHMQTIEIALQ----Q---SRYVIL--ALGSAQMERNIKNPFLAIEREQMILSNFSLD--EQKR--IRFVHVVDV 80 (196)
T ss_pred CCCcHHHHHHHHHHHH----h---CCEEEE--EEccCCCCCCCCCCCCHHHHHHHHHHhcchh--hcce--EEEEecCCc
Confidence 4999999999876543 3 244444 233 34456688888988777776432 2233 356666422
Q ss_pred cCCchHHHHHHHHHHhcCCcEeeecCCC-CCCCCCCCCCCCCCCccchhhhhhccCcc-------ccccchHHHHHHHhC
Q 013115 340 YAGPTEVQWHAKARINAGANFYIVGRDP-AGMGHPTEKRDLYDPDHGKKVLSMALGLE-------KLNILPFRMRTFARS 411 (449)
Q Consensus 340 yAGPREAllHAiiRkNyGcTHfIVGRDH-AGvG~~~~~~~~Yd~~~aq~i~~~~~g~~-------~l~i~p~~vR~~Lr~ 411 (449)
-++++|-+-+++--- -++..+. .+.. .+|-+ ++--.+..+|+-. .=+++...+|+++-+
T Consensus 81 ---~~~~~Wv~~V~~~v~---~v~~~n~~V~~~------g~~k~-e~s~~l~~fpew~~v~~~~~r~~~SaT~IR~~~~~ 147 (196)
T PRK13793 81 ---YNDEKWVKQVKSLVN---GVIEPNSKVGLI------GHFKD-ESSYYLRLFPEWVMVELDSLKDSISATPMREAYYQ 147 (196)
T ss_pred ---cchhHHHHHHHHhch---hhccCCCcceee------ccccc-CceEEEEeCCCCceeecccccCccchHHHHHHHHc
Confidence 479999999998763 1222222 1221 12311 2222222333211 234677789999999
Q ss_pred CCCCCCCCCchhHHHHHHHH
Q 013115 412 GENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 412 G~~pP~~F~rPeV~~iL~~~ 431 (449)
|.+ =+...+|.|+++|.+.
T Consensus 148 g~~-w~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 148 GKI-KTDAFPKGTIQFLEEF 166 (196)
T ss_pred CCC-hhhhCCHHHHHHHHHh
Confidence 986 2234899999998876
No 29
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=95.17 E-value=0.27 Score=50.63 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=80.1
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCC-CCCCCh-HHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTK-ADDVPL-DVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv-G~tK-~gDi~~-~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
|-||+|.||..+.+.+++ ..+ .+-+++-|-. -+-| ....+. +.|++-.+.++++ .| . +.+-+...+
T Consensus 9 sFdP~H~GHl~la~~a~~---~~~--~d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~--~~-~---~~v~~~E~~ 77 (342)
T PRK07152 9 SFDPIHKGHINIAKKAIK---KLK--LDKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN--LP-K---MEVSDFEIK 77 (342)
T ss_pred CCCCcCHHHHHHHHHHHH---HhC--CCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh--CC-C---eEEeHHHHh
Confidence 899999999999876543 222 1334433532 2223 344555 8899988888863 23 2 244444444
Q ss_pred cCCchHH-HHHHHHHHhcCCc--EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------cC---------------
Q 013115 340 YAGPTEV-QWHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------LG--------------- 394 (449)
Q Consensus 340 yAGPREA-llHAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~g--------------- 394 (449)
-.||.=. ---..+++.|.=+ .||+|-|-..- +-.-.+.+++++.+ +|
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~--------l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~ 149 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEK--------FKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLL 149 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhh--------cccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEe
Confidence 4555411 1123345556422 56778775421 11112234444432 11
Q ss_pred -ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 395 -LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 395 -~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
...+.|+-..+|+++++|. .+|+|++.+.+.
T Consensus 150 ~~~~~~iSST~IR~~~~~~~------vP~~V~~YI~~~ 181 (342)
T PRK07152 150 KNKNLNISSTKIRKGNLLGK------LDPKVNDYINEN 181 (342)
T ss_pred cCCccccCHHHHHHHHHcCC------CCHHHHHHHHHc
Confidence 1125566777999999998 567888888764
No 30
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=94.97 E-value=0.75 Score=44.92 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=87.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHcC-CCCCeEEEcccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPLG-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g-~~~~~lLLhPlv-G~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mry 340 (449)
|-||+|.||..+.+.+.+.+-..+ +......+.|.. .+.|..-.+.+.|++-.+.++++ .|. +.+-++...-
T Consensus 8 SFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~~----~~v~~~E~~~ 81 (225)
T cd09286 8 SFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS--SDW----IRVDDWESLQ 81 (225)
T ss_pred CcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc--CCC----EEEEehhccC
Confidence 799999999999887765432111 001112344642 24577788999999998877752 232 3555666666
Q ss_pred CCchHHH--HHHHHHHhc--------------------CCc-EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-----
Q 013115 341 AGPTEVQ--WHAKARINA--------------------GAN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA----- 392 (449)
Q Consensus 341 AGPREAl--lHAiiRkNy--------------------GcT-HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~----- 392 (449)
.||.-.+ +-.+ ++-| ++. .||+|-|.----. ....|...+.++++..+
T Consensus 82 ~~~syT~~TL~~l-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~---~~~~W~~~~~e~ll~~~~~vv~ 157 (225)
T cd09286 82 PEWMRTAKVLRHH-REEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESFG---IPGLWKDADLEEILGEFGLVVV 157 (225)
T ss_pred CccccHHHHHHHH-HHHhcccccccccccccccccccCCceEEEEecHhHHHhcC---CCCcCCHHHHHHHHHhCCEEEE
Confidence 6663322 2222 3223 244 4888988542100 00011111122222211
Q ss_pred --cC-------------------------ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 393 --LG-------------------------LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 393 --~g-------------------------~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
+| .....|+-..+|+++++|+.+ .....++|.+.+.+
T Consensus 158 ~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~~-~~llp~~V~~YI~~ 221 (225)
T cd09286 158 ERTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSV-KYLLPDPVIEYIEQ 221 (225)
T ss_pred eCCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHHHHHcCCCc-hhcCCHHHHHHHHH
Confidence 01 011256666699999999754 47788999888765
No 31
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=94.67 E-value=0.39 Score=48.79 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=86.0
Q ss_pred ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc----CC-CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 013115 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG----GF-TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPS 336 (449)
Q Consensus 262 QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv----G~-tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~ 336 (449)
=.-+-+|+||..|++.+.+.|.+.+....++-..|.. .+ ..+--.+.+.|.+-++.+ -=+ .+.++|.
T Consensus 5 G~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~------Gvd--~~~~~~F 76 (288)
T TIGR00083 5 GYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK------GVE--QLLVVVF 76 (288)
T ss_pred EeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc------CCC--EEEEeCC
Confidence 3678899999999999988877766443333333321 11 112244567776654432 122 2467776
Q ss_pred CcccC--CchHHHHHHHHHHhcCCcEeeecCCCC-CCCCCCCCCCCCCCccchhhhhhc--------cCccccccchHHH
Q 013115 337 PMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMA--------LGLEKLNILPFRM 405 (449)
Q Consensus 337 ~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~--------~g~~~l~i~p~~v 405 (449)
...+| .| |.-..-++.+.+++.|++||-|+. |-+. . .+...-+++.+.+ +-..+..|+-..+
T Consensus 77 ~~~~a~ls~-e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~--~----G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~I 149 (288)
T TIGR00083 77 DEEFANLSA-LQFIDQLIVKHLHVKFLVVGDDFRFGHDR--Q----GDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAI 149 (288)
T ss_pred CHHHHcCCH-HHHHHHHHHhccCCcEEEECCCccCCCCC--C----CCHHHHHHhccccCcEEEEeccccCCCeECHHHH
Confidence 54444 34 555566777889999999999987 3221 0 0111111111110 1111245777889
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHHHH
Q 013115 406 RTFARSGENPPDGFMCPGGWKVLVQYYE 433 (449)
Q Consensus 406 R~~Lr~G~~pP~~F~rPeV~~iL~~~y~ 433 (449)
|++|++|.- .++.+.|-+.|.
T Consensus 150 R~~l~~G~i-------~~A~~lLGr~y~ 170 (288)
T TIGR00083 150 RQALKNGDL-------ELANKLLGRPYF 170 (288)
T ss_pred HHHHHcCCH-------HHHHHhhhhhhc
Confidence 999999973 455555555554
No 32
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=94.56 E-value=0.12 Score=53.31 Aligned_cols=158 Identities=20% Similarity=0.195 Sum_probs=88.2
Q ss_pred CCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE--
Q 013115 254 QADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIV-- 331 (449)
Q Consensus 254 gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L-- 331 (449)
..-.+++ +.||+|.||.+|+++|.+ . ++-+.| .+...+..-++.+.|++-.+..+++ +|.= .++
T Consensus 140 ~i~~~~g--~fdP~t~GH~~li~~A~~----~---~d~~~v--~v~~~~~~~f~~~~R~~~v~~~~~~--~~nv-~v~~~ 205 (332)
T TIGR00124 140 KIGSIVM--NANPFTNGHRYLIEQAAR----Q---CDWLHL--FVVKEDASLFSYDERFALVKQGIQD--LSNV-TVHNG 205 (332)
T ss_pred cEEEEEe--CcCCCchHHHHHHHHHHH----H---CCEEEE--EEEeCCCCCCCHHHHHHHHHHHhcC--CCCE-EEEec
Confidence 3445677 999999999999876543 3 233322 1123456699999999999988863 4431 222
Q ss_pred -------EecCCCcccC-Cc---hH-----HHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhh-hccC
Q 013115 332 -------SIFPSPMHYA-GP---TE-----VQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLS-MALG 394 (449)
Q Consensus 332 -------~ilP~~MryA-GP---RE-----AllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~-~~~g 394 (449)
+.||.--.-. +. -. .||--.|+..+|.||=-||-++--.- ...|... .++++. ..|+
T Consensus 206 ~~~~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~-----t~~yn~~-m~~~~~~~~~~ 279 (332)
T TIGR00124 206 SAYIISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV-----TALYNQK-MKYWLEEPNDA 279 (332)
T ss_pred CCceeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh-----HHHHHHH-HHHhhhccCCC
Confidence 2233211111 11 11 34444577789999999999865332 1456332 222322 1221
Q ss_pred ccccc-------------cchHHHHHHHhCCC-CCCCCCCchhHHHHHHHHH
Q 013115 395 LEKLN-------------ILPFRMRTFARSGE-NPPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 395 ~~~l~-------------i~p~~vR~~Lr~G~-~pP~~F~rPeV~~iL~~~y 432 (449)
.+|+ ++-..+|++|.+|. .-=..+.++...+.|.++.
T Consensus 280 -~~I~~~~I~R~~~~~~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 280 -PPIEVVEIQRKLAAGGPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred -CCcEEEEEeeecCCCCeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 1233 33444999998875 1112245566666666543
No 33
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=94.15 E-value=0.3 Score=47.86 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=94.0
Q ss_pred eEEEee--cCCCccchhHHHHHHHHHHHHHc-CCCCCeEEEccc-cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 013115 257 AIFAFQ--LRNPIHNGHALLMNDTRRRLLEM-GYKNPILLLHPL-GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (449)
Q Consensus 257 ~VvaFQ--TRNPlHRaHe~L~r~a~~~ale~-g~~~~~lLLhPl-vG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ 332 (449)
++|++- |-||+|.||..+.+.|.+. ++. ++.....++.|. ....|++-++.+.|++-.+.++++ .| -+.
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~-l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~----~~~ 94 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARDA-LMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED--SD----FIM 94 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHH-HhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CC----CeE
Confidence 355444 7999999999998877653 333 111112356675 333567889999999988877752 22 246
Q ss_pred ecCCCcccCCchHHHHH-HHHHHhcC---------Cc-EeeecCCCC-CCCCCCCCCCCCCCccchhhhhhc--------
Q 013115 333 IFPSPMHYAGPTEVQWH-AKARINAG---------AN-FYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMA-------- 392 (449)
Q Consensus 333 ilP~~MryAGPREAllH-AiiRkNyG---------cT-HfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~-------- 392 (449)
+-++...-.|+.-.+-. ..+++-|+ +. .||+|-|-- .+.. .+ .|...+.+++++.+
T Consensus 95 V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~--~~--~W~~~~~~~l~~~~~~vV~~R~ 170 (236)
T PLN02945 95 VDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESFST--PG--VWIPDQVRTICRDYGVVCIRRE 170 (236)
T ss_pred ecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhcCC--CC--cCCHHHHHHHHHhCCEEEEeCC
Confidence 77777777777644332 33566563 22 488898842 1110 00 01111111121111
Q ss_pred ------------------------cCccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 393 ------------------------LGLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 393 ------------------------~g~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
.......|+-..+|+++++|+.+. .+..|+|.+-+.+
T Consensus 171 g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~-~lvP~~V~~YI~~ 231 (236)
T PLN02945 171 GQDVEKLVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVK-YLTPDGVIDYIKE 231 (236)
T ss_pred CCCHHHHhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCch-hhCCHHHHHHHHH
Confidence 011124466666999999998754 7889999988765
No 34
>PRK13670 hypothetical protein; Provisional
Probab=93.81 E-value=0.24 Score=52.30 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=57.3
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl--vG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP 335 (449)
|+| =-||+|+||.++++.+.+.+-+ +. ...++ |- +....+--++.+.|.+... .. --| ++..+|
T Consensus 6 IIa--Efdg~H~GH~~~i~~a~~~a~~-~~--~~~Vm-p~~f~qrg~p~i~~~~~R~~~a~---~~---GvD--~vielp 71 (388)
T PRK13670 6 IIV--EYNPFHNGHLYHLNQAKKLTNA-DV--TIAVM-SGNFVQRGEPAIVDKWTRAKMAL---EN---GVD--LVVELP 71 (388)
T ss_pred EEe--eeCCcCHHHHHHHHHHHHHHhC-CC--cEEEe-cHHHhCCCCCCCCCHHHHHHHHH---Hc---CCC--EEEEeC
Confidence 445 5799999999999887665432 31 22222 32 1111133567777776443 22 233 347778
Q ss_pred CCcccCCchHHHHHH--HHHHhcCCcEeeecCCCCC
Q 013115 336 SPMHYAGPTEVQWHA--KARINAGANFYIVGRDPAG 369 (449)
Q Consensus 336 ~~MryAGPREAllHA--iiRkNyGcTHfIVGRDHAG 369 (449)
..+--..|.+=+-.| ++ ..+||+|+++|-|..+
T Consensus 72 f~~a~~sae~F~~~aV~iL-~~l~v~~lv~G~e~g~ 106 (388)
T PRK13670 72 FLYSVQSADFFAEGAVSIL-DALGVDSLVFGSESGD 106 (388)
T ss_pred CchHhCCHHHHHHhHHHHH-HHcCCCEEEEcCCCCC
Confidence 773323443333332 67 8899999999999443
No 35
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=93.14 E-value=1.2 Score=45.54 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=81.4
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CC-CCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FT-KADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-----~t-K~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
.|+++=+-+-+|+||..|++.|.+.|-+.+..-.++-..|..- .. ..--.+.+-|.+..+++- =+ .
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g------VD--~ 86 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG------VD--Y 86 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC------CC--E
Confidence 6777779999999999999988776655542211222222211 11 122456678877665431 12 1
Q ss_pred EEecCCCcccCC-chHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------c--Ccccccc
Q 013115 331 VSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------L--GLEKLNI 400 (449)
Q Consensus 331 L~ilP~~MryAG-PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~--g~~~l~i 400 (449)
+.++|..-.++. +-|..++-++.+.+++.+++||.|+. -|....+ +...-++..+.+ + ...+-.|
T Consensus 87 ~~~~~F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~-FG~~~~G----~~~~L~~~~~~~g~~v~~v~~~~~~~~~I 161 (305)
T PRK05627 87 VLVLPFDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFR-FGKKRAG----DFELLKEAGKEFGFEVTIVPEVKEDGERV 161 (305)
T ss_pred EEEecCCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCC-CCCCCCC----CHHHHHHHHHHcCcEEEEeccEecCCCcC
Confidence 344664422222 33566777888999999999999996 2211110 111111111111 0 1123456
Q ss_pred chHHHHHHHhCCC
Q 013115 401 LPFRMRTFARSGE 413 (449)
Q Consensus 401 ~p~~vR~~Lr~G~ 413 (449)
+-..+|+++++|.
T Consensus 162 SST~IR~~I~~G~ 174 (305)
T PRK05627 162 SSTAIRQALAEGD 174 (305)
T ss_pred chHHHHHHHHcCC
Confidence 7777999999996
No 36
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=92.81 E-value=0.53 Score=48.35 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=83.8
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC------CCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD------DVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~g------Di~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
+|++.=.-+=+|+||..|++.+.+.|.+.+....++...|..-+...- -.+...|.+..+ -|.=+ .
T Consensus 17 ~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~------~~gvd--~ 88 (304)
T COG0196 17 CVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLA------GYGVD--A 88 (304)
T ss_pred cEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHH------hcCCc--E
Confidence 455555778899999999999988887776555566665554333222 234445544333 12223 2
Q ss_pred EEecCCCcccC--CchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchh-----hhhhccCccccccchH
Q 013115 331 VSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKK-----VLSMALGLEKLNILPF 403 (449)
Q Consensus 331 L~ilP~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~-----i~~~~~g~~~l~i~p~ 403 (449)
+.+++..-.+| .| +.-.+ ++-+++.|.|+|||-|.- -|+...+....=...+++ +...+. ..+..|+-.
T Consensus 89 ~~v~~F~~~fa~ls~-~~Fv~-~lv~~l~~k~ivvG~DF~-FGk~~~g~~~~L~~~~~~gf~v~~v~~~~-~~~~~iSSt 164 (304)
T COG0196 89 LVVLDFDLEFANLSA-EEFVE-LLVEKLNVKHIVVGFDFR-FGKGRQGNAELLRELGQKGFEVTIVPKIN-EEGIRISST 164 (304)
T ss_pred EEEEeCCHhHhhCCH-HHHHH-HHHhccCCcEEEEecccc-cCCCCCCCHHHHHHhccCCceEEEeccEe-cCCcEEchH
Confidence 46666665555 44 45555 999999999999999964 232111100000011111 111111 234557777
Q ss_pred HHHHHHhCCC
Q 013115 404 RMRTFARSGE 413 (449)
Q Consensus 404 ~vR~~Lr~G~ 413 (449)
.+|+.|++|.
T Consensus 165 ~IR~~L~~gd 174 (304)
T COG0196 165 AIRQALREGD 174 (304)
T ss_pred HHHHHHhcCC
Confidence 7999999996
No 37
>PRK13671 hypothetical protein; Provisional
Probab=92.77 E-value=0.54 Score=48.19 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=56.9
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC---CCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD---DVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~g---Di~~~vRvr~y~all~~~ylP~~~~~L~i 333 (449)
.|+| +-||+|.||.++.+.+.+ +.+ .+.+++-|-+.....+ -++.+.|.+.-+ ..| -| ++.=
T Consensus 4 GIIa--eFNP~H~GHl~~~~~a~~---~~~--~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~---~~G---~D--LViE 68 (298)
T PRK13671 4 GIIA--EYNPFHNGHIYQINYIKN---KFP--NEKIIVILSGKYTQRGEIAVASFEKRKKIAL---KYG---VD--KVIK 68 (298)
T ss_pred eEEe--eeCCccHHHHHHHHHHHH---hcC--CCEEEEEECcCCCCCCCCCCCCHHHHHHHHH---HcC---CC--EEEe
Confidence 4777 999999999999876644 222 2444444655544444 458888877433 222 34 2233
Q ss_pred cC------CCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCC
Q 013115 334 FP------SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 370 (449)
Q Consensus 334 lP------~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGv 370 (449)
+| ++-.||---=.++ ..+||+++.+|-++..+
T Consensus 69 LP~~~a~~sAe~FA~gaV~lL-----~~lgvd~l~FGsE~~d~ 106 (298)
T PRK13671 69 LPFEYATQAAHIFAKGAIKKL-----NKEKIDKLIFGSESNDI 106 (298)
T ss_pred ccHHHHhhchHHHHHHHHHHH-----HHcCCCEEEECCCCCCH
Confidence 45 2233332222333 56799999999998765
No 38
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=92.23 E-value=0.97 Score=43.29 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=80.0
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCC------Cce
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDP------ETT 329 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~------~~~ 329 (449)
.+||. ..||.+.||.||+..|.+ + |+.|.|--+ ....-.+|.+.|.+-.+.=.. -+|. +.-
T Consensus 2 gaIVM--NaNPFT~GH~yLiE~Aa~---~----~d~l~vFVV--~eD~S~Fpf~~R~~LVk~G~~--~L~NV~V~~~g~Y 68 (182)
T PF08218_consen 2 GAIVM--NANPFTLGHRYLIEQAAK---E----CDWLHVFVV--SEDRSLFPFADRYELVKEGTA--DLPNVTVHPGGDY 68 (182)
T ss_pred ceEEE--cCCCCccHHHHHHHHHHH---h----CCEEEEEEE--ccccCcCCHHHHHHHHHHHhC--cCCCEEEEcCCCe
Confidence 36777 899999999999875532 2 466666333 445567999999885554332 1322 222
Q ss_pred EE--EecCCCcccCCchH---------HHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc------
Q 013115 330 IV--SIFPSPMHYAGPTE---------VQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA------ 392 (449)
Q Consensus 330 ~L--~ilP~~MryAGPRE---------AllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~------ 392 (449)
++ +.||.--.-..-.. .+|--.|+..+|.|+=-||-++-..-- ..|.. ..+++|...
T Consensus 69 iIS~aTFPsYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT-----~~YN~-~M~~~Lp~~gi~v~e 142 (182)
T PF08218_consen 69 IISSATFPSYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT-----RIYNE-AMKEILPPYGIEVVE 142 (182)
T ss_pred eeecccChhhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH-----HHHHH-HHHHhccccCCEEEE
Confidence 22 33443222221111 244556888999999999998654321 34522 123444332
Q ss_pred -c--CccccccchHHHHHHHhCCC
Q 013115 393 -L--GLEKLNILPFRMRTFARSGE 413 (449)
Q Consensus 393 -~--g~~~l~i~p~~vR~~Lr~G~ 413 (449)
| ...+--|+-.++|++|++|.
T Consensus 143 i~R~~~~g~~ISAS~VR~~l~~~~ 166 (182)
T PF08218_consen 143 IPRKEINGEPISASRVRKLLKEGD 166 (182)
T ss_pred EecccCCCcEEcHHHHHHHHHcCC
Confidence 0 11233355555999999994
No 39
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=92.19 E-value=0.39 Score=44.47 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=63.4
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc----C--CCCCCCCChHHHHHHHHHHHHcCCCCCCce
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG----G--FTKADDVPLDVRMEQHSKVLEDGVLDPETT 329 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv----G--~tK~gDi~~~vRvr~y~all~~~ylP~~~~ 329 (449)
..+++.=.-+=+|+||..|++.+.+.|.+.+++-.++...|-. + ....--.+.+-|.+.++.+- -+
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G------vd-- 77 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG------VD-- 77 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT------ES--
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC------CC--
Confidence 4567766888999999999999988887765443345554421 1 22223466777887666432 12
Q ss_pred EEEecCCCcccC-CchHHHHHHHHHHhcCCcEeeecCCCC
Q 013115 330 IVSIFPSPMHYA-GPTEVQWHAKARINAGANFYIVGRDPA 368 (449)
Q Consensus 330 ~L~ilP~~MryA-GPREAllHAiiRkNyGcTHfIVGRDHA 368 (449)
.+.++|....++ =.-|.-++-++.++++|.+++||-|+.
T Consensus 78 ~~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~Dfr 117 (157)
T PF06574_consen 78 YVIVIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFR 117 (157)
T ss_dssp EEEEE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-E
T ss_pred EEEEecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCcc
Confidence 135667554333 233778888899999999999999965
No 40
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=91.89 E-value=0.9 Score=41.62 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=53.6
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAG 342 (449)
|-||+|.||..++++|.+ .. +-+.+-|..-..|..-++.+.|++-.+.+++ -+|.- .+... +.|
T Consensus 9 SFDPih~GHl~ii~~A~~----~~---D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~--~~~~v-~v~~~------~~~ 72 (140)
T PRK13964 9 SFDPFHKGHLNILKKALK----LF---DKVYVVVSINPDKSNASDLDSRFKNVKNKLK--DFKNV-EVLIN------ENK 72 (140)
T ss_pred eeCCCCHHHHHHHHHHHH----hC---CEEEEEeccCCCCCCCCCHHHHHHHHHHHHc--CCCCc-EEecC------cCC
Confidence 789999999999876643 32 4445445555567778999999999998886 34542 22111 122
Q ss_pred chHHHHHHHHHHhcCCcEeeecC
Q 013115 343 PTEVQWHAKARINAGANFYIVGR 365 (449)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGR 365 (449)
++ .=+.+..||+-+|-|=
T Consensus 73 ----l~-v~~~~~~~a~~ivrGl 90 (140)
T PRK13964 73 ----LT-AEIAKKLGANFLIRSA 90 (140)
T ss_pred ----cH-HHHHHHCCCeEEEEec
Confidence 11 1245777999777663
No 41
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=91.75 E-value=2.6 Score=38.99 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=53.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCC---CCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT---KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~t---K~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-||+|.||..+++.|++ . ++-|+|-|-.-.. +..-++.+.|++-.+..+.+ ++ ...+..++.+..
T Consensus 7 ~F~P~H~GHl~li~~a~~----~---~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~--~~--~~~v~~~~~~d~ 75 (158)
T cd02167 7 KFAPLHTGHVYLIYKALS----Q---VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD--QE--NIVVHTLNEPDI 75 (158)
T ss_pred ccCCCCHHHHHHHHHHHH----H---CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CC--CEEEEeCCCCCC
Confidence 788999999999876543 3 2555553432221 23368999999999888752 22 355677776444
Q ss_pred c-CCchHHHHHHHHHHhcC
Q 013115 340 Y-AGPTEVQWHAKARINAG 357 (449)
Q Consensus 340 y-AGPREAllHAiiRkNyG 357 (449)
. --..-..|-+.|+...+
T Consensus 76 ~~~~~~w~~w~~~v~~~v~ 94 (158)
T cd02167 76 PEYPNGWDIWSNRVKTLIA 94 (158)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 2 22234555777776665
No 42
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=91.26 E-value=0.6 Score=40.92 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=51.5
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP 335 (449)
.|++.=+-+++|+||..+++.|.+.+.++ ..++.-.++.. ..+.--.+.+.|++..+.+ ++. + .+ +|
T Consensus 3 ~v~~~G~FDgvH~GH~~ll~~a~~~~~~l---~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~---~~v--d-~v---~~ 70 (129)
T cd02171 3 VVITYGTFDLLHIGHLNLLERAKALGDKL---IVAVSTDEFNAGKGKKAVIPYEQRAEILESI---RYV--D-LV---IP 70 (129)
T ss_pred EEEEeeeeccCCHHHHHHHHHHHHhCCEE---EEEEeccHhHHhcCCCCCCCHHHHHHHHHcC---Ccc--C-EE---ec
Confidence 45555588999999999998664322111 01111111111 1123346778898877644 111 1 12 22
Q ss_pred CCcccCCchHHHHHHHHHHhcCCcEeeecCCCCC
Q 013115 336 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (449)
Q Consensus 336 ~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (449)
+..+.+-+-. + +.+.++++++|.|+.|
T Consensus 71 ----~~~~~~f~~~--~-~~l~~~~vv~G~d~~g 97 (129)
T cd02171 71 ----ETNWEQKIED--I-KKYNVDVFVMGDDWEG 97 (129)
T ss_pred ----CCCccChHHH--H-HHhCCCEEEECCCCcc
Confidence 2344332222 2 6789999999999854
No 43
>PRK07143 hypothetical protein; Provisional
Probab=88.98 E-value=1.7 Score=44.07 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=75.1
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCe-EEEccccCC-CCCC-CCChHHHHHHHHHHHHcCCCCCCceEEE
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPI-LLLHPLGGF-TKAD-DVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~-lLLhPlvG~-tK~g-Di~~~vRvr~y~all~~~ylP~~~~~L~ 332 (449)
..|+++=.-+-+|+||..|++.|. +.+..-.+ .+=||..=. .++. -.+.+.|.+..+.+ | -+ .+.
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~----~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~---G---vd--~~~ 83 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAK----ESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL---G---FK--NII 83 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHH----HCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC---C---CC--EEE
Confidence 367887799999999999998664 34321111 121333100 1111 34556676654432 1 13 246
Q ss_pred ecCCC--cccCCchHHHHHHHHHHhcCCcEeeecCCCC-CCCCCCC---CCCCCCCccchhhhhhccCccccccchHHHH
Q 013115 333 IFPSP--MHYAGPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTE---KRDLYDPDHGKKVLSMALGLEKLNILPFRMR 406 (449)
Q Consensus 333 ilP~~--MryAGPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~---~~~~Yd~~~aq~i~~~~~g~~~l~i~p~~vR 406 (449)
++|.. +.--.|.|=+=+ ++ + +++.+++||.|+. |=+.-.+ =+.+++ .-.+.+... ..+..|+-..+|
T Consensus 84 ~~~F~~~~a~ls~e~Fi~~-ll-~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~---~v~~v~~~~-~~g~~ISST~IR 156 (279)
T PRK07143 84 LLDFNEELQNLSGNDFIEK-LT-K-NQVSFFVVGKDFRFGKNASWNADDLKEYFP---NVHIVEILK-INQQKISTSLLK 156 (279)
T ss_pred EeCCCHHHhCCCHHHHHHH-HH-h-cCCCEEEECCCcccCCCCCCCHHHHHHhCC---cEEEeCCEE-cCCcEEcHHHHH
Confidence 66754 444466554433 44 4 9999999999988 4321110 011111 111122111 234567888899
Q ss_pred HHHhCCC
Q 013115 407 TFARSGE 413 (449)
Q Consensus 407 ~~Lr~G~ 413 (449)
++|++|.
T Consensus 157 ~~l~~G~ 163 (279)
T PRK07143 157 EFIEFGD 163 (279)
T ss_pred HHHHcCC
Confidence 9999996
No 44
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=88.61 E-value=1.4 Score=33.66 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=35.1
Q ss_pred eecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcc--ccCCCCC-CCCChHHHHHHHHHHHH
Q 013115 261 FQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP--LGGFTKA-DDVPLDVRMEQHSKVLE 320 (449)
Q Consensus 261 FQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhP--lvG~tK~-gDi~~~vRvr~y~all~ 320 (449)
+=+-||+|.||.++++.+. +.+. ...+++.+ .....|. .-.+.+.|.+..+.+..
T Consensus 5 ~G~Fdp~H~GH~~~l~~a~----~~~~-~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 5 VGTFDPFHLGHLDLLERAK----ELFD-ELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKY 62 (66)
T ss_pred cCccCCCCHHHHHHHHHHH----HhCC-EEEEEECchHhccccCCCCCCCHHHHHHHHHHhcc
Confidence 3388999999999987653 3431 12344432 2222333 56899999998887653
No 45
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=88.21 E-value=2 Score=39.28 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=40.4
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEE----ccccCCCC-CCC-CChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGGFTK-ADD-VPLDVRMEQHSKVLEDGVLDPETTIVSIFPS 336 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLL----hPlvG~tK-~gD-i~~~vRvr~y~all~~~ylP~~~~~L~ilP~ 336 (449)
|-||+|.||..|++.|.+.+- +-+.+ .++.-.++ +.- .+.+.|++..+.++. .+-|. .-+.+.|.
T Consensus 7 tFD~lH~GH~~Ll~~a~~~~~------d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~-~~~~~--~~~~i~~i 77 (143)
T cd02164 7 TFDRLHDGHKILLSVAFLLAG------EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLV-DLKPT--LKYEIVPI 77 (143)
T ss_pred cCCCCCHHHHHHHHHHHHHhc------CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHH-hcCCC--ceEEEEEc
Confidence 889999999999987654321 11222 22111111 223 489999999999996 34332 12355565
Q ss_pred Cccc
Q 013115 337 PMHY 340 (449)
Q Consensus 337 ~Mry 340 (449)
.=.|
T Consensus 78 ~d~~ 81 (143)
T cd02164 78 DDPY 81 (143)
T ss_pred cCCC
Confidence 4333
No 46
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=86.47 E-value=2.9 Score=40.43 Aligned_cols=147 Identities=18% Similarity=0.335 Sum_probs=89.2
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC--CCC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG--FTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG--~tK-~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
|-||+|.||..+.+.++++ ++.. .++++ |..+ .++ .+-.|.+.|++-.+.+++++ |. +.+--..+.
T Consensus 11 sFdP~H~GHl~ia~~~~~~---l~ld-~vi~~-ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~--~~----~~v~~~e~~ 79 (197)
T COG1057 11 SFDPPHYGHLLIAEEALDQ---LGLD-KVIFL-PSPVPPHKKKKELASAEHRLAMLELAIEDN--PR----FEVSDREIK 79 (197)
T ss_pred CCCCCCHHHHHHHHHHHHh---cCCC-eEEEe-cCCCCCCCCCccCCCHHHHHHHHHHHHhcC--CC----cceeHHHHH
Confidence 7999999999998766542 2222 23333 3333 234 56899999999999888742 33 234444555
Q ss_pred cCCch---HHHHHHHHHHhcCCc-EeeecCCCC-CCCCCCCCCCCCCCccchhhhhhc-------cC-------------
Q 013115 340 YAGPT---EVQWHAKARINAGAN-FYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMA-------LG------------- 394 (449)
Q Consensus 340 yAGPR---EAllHAiiRkNyGcT-HfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~-------~g------------- 394 (449)
--|+. +.+-|..-+.|-.+. -||+|-|.- .++ .+ ++.+++++.. |+
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~------~W---~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~ 150 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLP------KW---YDWDELLKLVTFVVAPRPGYGELELSLLSSGG 150 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhh------hh---hhHHHHHHhCCEEEEecCCchhhhhhhhcCCc
Confidence 55665 666665445555542 389999864 222 12 2233444332 22
Q ss_pred ------ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 395 ------LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 395 ------~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
...+.|+-..+|+.++.|+.+ ..+..++|.+-+.+
T Consensus 151 ~~~~~~~~~~~ISSt~IR~~~~~~~~~-~~llP~~V~~YI~~ 191 (197)
T COG1057 151 AIILLDLPRLDISSTEIRERIRRGASV-DYLLPDSVLSYIEE 191 (197)
T ss_pred eEEEccCccccCchHHHHHHHhCCCCc-hhcCCHHHHHHHHH
Confidence 123456667799999999754 45677778776654
No 47
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=85.70 E-value=3.6 Score=38.73 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=88.3
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAG 342 (449)
|-+|++.||.-++++|.+..-++ -.+++.||- |..-++.+-|++-.+.... -+|.-++. + |.|
T Consensus 10 SFDPiTnGHlDii~RA~~~Fd~v---iVaV~~np~----K~plFsleER~~l~~~~~~--~l~nV~V~-~-------f~~ 72 (159)
T COG0669 10 SFDPITNGHLDIIKRASALFDEV---IVAVAINPS----KKPLFSLEERVELIREATK--HLPNVEVV-G-------FSG 72 (159)
T ss_pred CCCCCccchHHHHHHHHHhccEE---EEEEEeCCC----cCCCcCHHHHHHHHHHHhc--CCCceEEE-e-------ccc
Confidence 78999999999998875532222 135666776 9999999999999998875 46654332 2 233
Q ss_pred chHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC-CCCccc----------hhhhhhccCccccccchHHHHHHHhC
Q 013115 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL-YDPDHG----------KKVLSMALGLEKLNILPFRMRTFARS 411 (449)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~-Yd~~~a----------q~i~~~~~g~~~l~i~p~~vR~~Lr~ 411 (449)
|=+=++|..||+.+|=|=- ...|| |+-+-| .++|=+ |...-.-|+-..+|+.++-
T Consensus 73 -----Llvd~ak~~~a~~ivRGLR--------~~sDfeYE~qma~~N~~L~~eveTvFl~-~s~~~~~iSSs~Vreia~~ 138 (159)
T COG0669 73 -----LLVDYAKKLGATVLVRGLR--------AVSDFEYELQMAHMNRKLAPEVETVFLM-PSPEYSFISSSLVREIAAF 138 (159)
T ss_pred -----HHHHHHHHcCCCEEEEecc--------ccchHHHHHHHHHHHHhhcccccEEEec-CCcceehhhHHHHHHHHHh
Confidence 5566788999999986621 11133 221111 111111 1112233344449999999
Q ss_pred CCCCCCCCCchhHHHHHHHH
Q 013115 412 GENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 412 G~~pP~~F~rPeV~~iL~~~ 431 (449)
|.++- .|-+|+|.+.|.+-
T Consensus 139 ggdvs-~~VP~~V~~~l~~k 157 (159)
T COG0669 139 GGDVS-EFVPEAVARALRAK 157 (159)
T ss_pred CCCch-hhCCHHHHHHHHHh
Confidence 99885 57899999988764
No 48
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=81.49 E-value=2.9 Score=36.65 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=46.8
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEc--cccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH--PLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLh--PlvG-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
+-+.+|+||..+++.|.+ .+.. ..+.++ |+.- ..+.--.+.+-|++.++.+- |. + .+ +|.
T Consensus 6 ~FDg~H~GH~~~l~~a~~----~~~~-~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~---~V--d-~v---i~~--- 68 (125)
T TIGR01518 6 TFDLLHWGHINLLERAKQ----LGDY-LIVALSTDEFNLQKQKKAYHSYEHRKLILETIR---YV--D-LV---IPE--- 68 (125)
T ss_pred eeCCCCHHHHHHHHHHHH----cCCE-EEEEEechHHHhhcCCCCCCCHHHHHHHHHcCC---Cc--c-EE---ecC---
Confidence 678999999999986643 3311 122222 2211 11222356688877666431 11 1 11 231
Q ss_pred cCCchHHHHHHHHHHhcCCcEeeecCCCCC
Q 013115 340 YAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (449)
Q Consensus 340 yAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (449)
. |.|.-.+- + +.+++.++++|-|+.|
T Consensus 69 -~-~~~~f~~~-l-~~~~~~~vv~G~D~~g 94 (125)
T TIGR01518 69 -K-SWEQKKQD-I-IDFNIDVFVMGDDWEG 94 (125)
T ss_pred -C-CccchHHH-H-HHcCCCEEEECCCccc
Confidence 1 22222222 3 4799999999999964
No 49
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=79.73 E-value=4.1 Score=41.88 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=37.4
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc--CC-CCCCCCChHHHHHHHHHHHH
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG--GF-TKADDVPLDVRMEQHSKVLE 320 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv--G~-tK~gDi~~~vRvr~y~all~ 320 (449)
|-||+|.||..+++.|.+ . ++-+++-|-. -. ++..-++.+.|++-.+..+.
T Consensus 9 sFdP~H~GHl~ii~~a~~----~---~d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 9 KFYPLHTGHIYLIYEAFS----K---VDELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFK 62 (325)
T ss_pred ccCCCCHHHHHHHHHHHH----H---CCEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhc
Confidence 899999999999876543 3 2556553432 11 45677899999999998875
No 50
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=77.39 E-value=3.1 Score=36.06 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=31.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C--CCCCChHHHHHHHHHHHH
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K--ADDVPLDVRMEQHSKVLE 320 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~t-K--~gDi~~~vRvr~y~all~ 320 (449)
+-||+|.||..+++.|. +.+...-.+++ |..... | ..-++.+.|++-.+.+..
T Consensus 5 sFdP~H~GH~~~l~~a~----~~~~~~~vi~v-~~~~~~~k~~~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 5 SFDPPHNGHLNLLREAR----ELFDEDLVIVV-PSDNSPHKDKKPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp --TT--HHHHHHHHHHH----HHSSESEEEEE-EEEHHCHSTTSSSSTHHHHHHHHHHHHT
T ss_pred EcCcccHHHHHHHHHHH----Hhccccccccc-cccccccccccccCcHHHHHHHHHHHHh
Confidence 78999999999987654 33311112333 322222 2 256899999999998886
No 51
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=77.29 E-value=6.6 Score=40.65 Aligned_cols=210 Identities=18% Similarity=0.169 Sum_probs=113.4
Q ss_pred hcccCCcEEE---eeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCC
Q 013115 211 VITPAGNWLV---GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGY 287 (449)
Q Consensus 211 ~~~~~g~~~v---gG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~ 287 (449)
++...|=|-| .+-+.+++... ..|..|..+-++.|.. .+.+.+||. -.||.--||.||+.+|. .+
T Consensus 104 lFk~~GF~~i~~~~~~ivlmENs~--trl~~y~~~L~k~r~~--gkkIgaIVM--NANPFTLGH~YLVEqAa---aq--- 171 (352)
T COG3053 104 LFKQCGFSEIASAENVIVLMENSA--TRLKDYLSSLKKLRHP--GKKIGAIVM--NANPFTLGHRYLVEQAA---AQ--- 171 (352)
T ss_pred HHHhCCceEeeccCceEEEeecCc--hhHHHHHHHHHHhccC--CCeeEEEEE--eCCCccchhHHHHHHHH---hh---
Confidence 3334454443 34455665322 2566666555555544 456678888 99999999999986542 22
Q ss_pred CCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCce------E--EEecCCCccc---------CCchHHHHHH
Q 013115 288 KNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETT------I--VSIFPSPMHY---------AGPTEVQWHA 350 (449)
Q Consensus 288 ~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~------~--L~ilP~~Mry---------AGPREAllHA 350 (449)
||-|=| .+=....-.+|++.|++-.+.=+. +++.=+. + -+.||.-..- +-=-=.||.-
T Consensus 172 -cDwlHL--FvV~eD~S~f~y~~R~~Lv~~G~~--~l~Nvt~HsgsdYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~ 246 (352)
T COG3053 172 -CDWLHL--FVVKEDSSLFPYEDRLDLVKKGTA--DLPNVTVHSGSDYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRK 246 (352)
T ss_pred -CCEEEE--EEEecccccCCHHHHHHHHHHhhc--cCCceEEecCCCeEEEecccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 464433 333456678999999996654443 4443211 1 1344432111 1111145666
Q ss_pred HHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc----cCcc----------ccccchHHHHHHHhCCCC-C
Q 013115 351 KARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA----LGLE----------KLNILPFRMRTFARSGEN-P 415 (449)
Q Consensus 351 iiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~----~g~~----------~l~i~p~~vR~~Lr~G~~-p 415 (449)
-+++.+|.||=-||-++--.- ...|.. +.++++.+. |-+. +--|+...+|++|.++.- -
T Consensus 247 ~iA~aLgIThRfVG~EP~c~v-----T~~YNq-~M~~~L~~~~~~~p~I~vvei~Rk~~~~~~ISAS~VR~~l~~~~~~~ 320 (352)
T COG3053 247 YIAPALGITHRFVGTEPFCRV-----TAIYNQ-QMRYWLEDPTISAPPIEVVEIERKKYQEMPISASRVRQLLAKNDLEA 320 (352)
T ss_pred HHHHHhCcceeeecCCCCcHH-----HHHHHH-HHHHHHhccCCCCCceEEEEeehhhhcCCcccHHHHHHHHHhCCHHH
Confidence 688899999999999865332 134532 233455432 1111 112333349999887742 1
Q ss_pred CCCCCchhHHHHHHHHHHhhhhhccccC
Q 013115 416 PDGFMCPGGWKVLVQYYESLQAEEATQQ 443 (449)
Q Consensus 416 P~~F~rPeV~~iL~~~y~~~~~~~~~~~ 443 (449)
=..|-+.-...-|.+.++...-+.+.+|
T Consensus 321 ia~lVP~tTl~Yl~~~~a~~~~~~~~~q 348 (352)
T COG3053 321 IANLVPATTLNYLQQHLAEHIIDIAARQ 348 (352)
T ss_pred HHhhCcHHHHHHHHHHHHHhHHHHhhhc
Confidence 1123334445555555555544444444
No 52
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=77.09 E-value=14 Score=33.43 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=54.6
Q ss_pred CCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC---CCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 254 QADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA---DDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 254 gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~---gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
+=+.|++.=+-+-+|+||..+++.|.+.+... ..++--+|..-..|+ --.+.+-|++..+++- +. +.++
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~---~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~---~V--D~vi 81 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRL---VVGVNSDASVKRLKGETRPINPEEDRAEVLAALS---SV--DYVV 81 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCcc---EEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcC---CC--CEEE
Confidence 33567777789999999999998764432111 122333343221122 1456688888666541 22 2122
Q ss_pred EEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCC
Q 013115 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (449)
Q Consensus 331 L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (449)
+ ++ .+ -|.+-+ +.+++.++++|-|+..
T Consensus 82 ~--f~-~~---~~~~fi------~~l~~~~vv~G~d~~~ 108 (144)
T TIGR02199 82 I--FD-ED---TPEELI------GELKPDILVKGGDYKV 108 (144)
T ss_pred E--CC-CC---CHHHHH------HHhCCCEEEECCCCCC
Confidence 2 32 11 243332 3699999999999764
No 53
>PLN02388 phosphopantetheine adenylyltransferase
Probab=76.23 E-value=8.4 Score=36.78 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=59.7
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CC-CCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-AD-DVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK-~g-Di~~~vRvr~y~all~~~ylP~~~~~L~i 333 (449)
..|++.=|-+.+|+||..|++.|.+.+.+.. .-++==+|+....+ +. -.+.+.|++..+.++. .+.++.. +.+
T Consensus 20 ~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~v--vIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~--~~~p~~~-~~i 94 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRLFLKAAAELARDRI--VIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIK--SIKPELV-VQA 94 (177)
T ss_pred CeEEEEecCCccCHHHHHHHHHHHHhhhcCE--EEecCCChhhcccCCCcccCCHHHHHHHHHHHHH--HcCCCce-EEE
Confidence 4677777999999999999987755432210 00111133321111 22 2478999999999997 3455533 477
Q ss_pred cCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCC
Q 013115 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (449)
Q Consensus 334 lP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (449)
.|..=.|+... . .-....+||..+...
T Consensus 95 ~~i~D~~Gpt~-------~--~~~~d~LVVS~ET~~ 121 (177)
T PLN02388 95 EPIIDPYGPSI-------V--DENLEAIVVSKETLP 121 (177)
T ss_pred EEecCCCCCcc-------c--CCCCCEEEEcHhHhh
Confidence 77766665431 1 223556777776553
No 54
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=76.21 E-value=13 Score=33.72 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=52.0
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK-~gDi~~~vRvr~y~all~~~ylP~~~~~L~il 334 (449)
..|++.=+-+.+|+||..+++.|.+.+..+ ..++.-++.....+ .-=.+.+-|++..+.+ ++. + .+ .++
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~---vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~l---g~V--D-~v-i~~ 74 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLGDIL---VVSLTSDRYVNKGPGRPIFPEDLRAEVLAAL---GFV--D-YV-VLF 74 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhCCeE---EEEEeChHHhccCCCCCCCCHHHHHHHHHcc---CCc--c-EE-EEC
Confidence 456766689999999999998765422111 01122122222112 2235668888866533 121 2 22 334
Q ss_pred CCCcccCCchHHHHHHHHHHhcCCcEeeecCCCC
Q 013115 335 PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (449)
Q Consensus 335 P~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (449)
|. --|.| .+. .+++.++++|-|+.
T Consensus 75 ~~----~~~~~-fi~-----~l~~~~vv~G~d~~ 98 (144)
T cd02172 75 DN----PTALE-IID-----ALQPNIYVKGGDYE 98 (144)
T ss_pred CC----CCHHH-HHH-----HhCCCEEEECCCcc
Confidence 52 23444 322 59999999999986
No 55
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=76.19 E-value=4.7 Score=38.37 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=37.9
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCC-----CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-----TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~-----tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP 335 (449)
.-.|+|.||-++++.|++ . .+-|.| ++|- |..+-+.+.-|+-..+..+.+.-.+. |+.+.-+|
T Consensus 11 RFqP~H~GHl~vi~~al~----~---vDeliI--~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~-r~~~~~v~ 78 (172)
T COG1056 11 RFQPLHTGHLYVIKRALS----K---VDELII--VIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL-RVYLRPVF 78 (172)
T ss_pred ccCCccHhHHHHHHHHHH----h---CCEEEE--EEccCcccccccCCCCccchhHHHHHHHHhcCCCc-eEEEEecC
Confidence 445999999999987643 3 254555 5664 23344567778777776664333443 44444443
No 56
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=75.16 E-value=22 Score=32.78 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=44.3
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC----C-CCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG----F-TKADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG----~-tK~gDi~~~vRvr~y~all~~~ylP~~~~~L 331 (449)
+|+..=|-||+|.||..+.+.| .+.+ +-+++-.-.. . ++.--.|.+.|++..+.+++ +..|..+.
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~A----~~~~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~-~~~~~~~~-- 72 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRKA----FELG---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLK-AVEYDREY-- 72 (153)
T ss_pred EEEEecccCCCCHHHHHHHHHH----HHcC---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHH-hcCCCCcE--
Confidence 3444458999999999998765 3443 3344411111 1 22346799999999999886 45555533
Q ss_pred EecCCC
Q 013115 332 SIFPSP 337 (449)
Q Consensus 332 ~ilP~~ 337 (449)
.+.|..
T Consensus 73 ~i~~i~ 78 (153)
T PRK00777 73 EIVKID 78 (153)
T ss_pred EEEecc
Confidence 444543
No 57
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=74.57 E-value=42 Score=35.67 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=56.7
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC------------CCCCChHHHHHHHHHHHHcCC
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK------------ADDVPLDVRMEQHSKVLEDGV 323 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK------------~gDi~~~vRvr~y~all~~~y 323 (449)
+..+.+=+-+|+|.||..|++.|.+ . ++.+.+ +||... ..-++.+.|++-.+..+. .
T Consensus 53 ~~~v~~G~FdP~H~GH~~lI~~A~~----~---~d~l~v--~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~--~ 121 (399)
T PRK08099 53 KIGVVFGKFYPLHTGHIYLIQRACS----Q---VDELHI--IICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK--Y 121 (399)
T ss_pred cEEEEEEecCCCCHHHHHHHHHHHH----H---CCeeEE--EEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC--C
Confidence 3455555999999999999987644 2 233333 223222 345788999999888875 3
Q ss_pred CCCCceEEEec---CCCcccCCchHHHHHHHHHHhc-----CCcEeeecCCC
Q 013115 324 LDPETTIVSIF---PSPMHYAGPTEVQWHAKARINA-----GANFYIVGRDP 367 (449)
Q Consensus 324 lP~~~~~L~il---P~~MryAGPREAllHAiiRkNy-----GcTHfIVGRDH 367 (449)
.+ + +.+..+ +.+....| +..|-+-+++.. ..+.+++|-+.
T Consensus 122 ~~-~-v~v~~~~~~~~~~~~~~--~~~w~~~v~~~v~~~~~~~~~vf~~~~~ 169 (399)
T PRK08099 122 QK-N-IKIHAFNEEGMEPYPHG--WDVWSNGIKAFMAEKGIQPDVIYTSEEQ 169 (399)
T ss_pred CC-C-EEEEecCCCCCCCCCcc--HHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 44 3 332322 33322233 556666666443 45667776553
No 58
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=71.03 E-value=15 Score=32.35 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=49.9
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc--c-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL--G-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl--v-G~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~i 333 (449)
.+++.=+-||+|+||..+++.|. +.+ ....+.+++- . ..++.--.+.+-|++..+.+ + +. +.++ +
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~~a~----~~~-~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~-~--~v--d~v~--~ 70 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLEEAK----KLG-DYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL-K--YV--DEVI--L 70 (136)
T ss_pred EEEEcCccCCCCHHHHHHHHHHH----HhC-CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcC-C--Cc--CEEE--E
Confidence 35555588999999999987664 332 0012222211 1 11233456779999988753 1 22 2121 1
Q ss_pred cCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCC
Q 013115 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (449)
Q Consensus 334 lP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (449)
. -|.+ ..+.+ .+ +.+.++|+|-|+-
T Consensus 71 ~-------~~~~-~~~~l-~~-~~~~~vv~G~d~~ 95 (136)
T cd02170 71 G-------HPWS-YFKPL-EE-LKPDVIVLGDDQK 95 (136)
T ss_pred C-------CCCC-HhHHH-HH-HCCCEEEECCCCC
Confidence 1 1444 33444 33 5578999999984
No 59
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=68.30 E-value=7.5 Score=41.27 Aligned_cols=94 Identities=21% Similarity=0.394 Sum_probs=28.7
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC---CChHHHHHHHHHHHHcCCCCCCceEEEec
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD---VPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gD---i~~~vRvr~y~all~~~ylP~~~~~L~il 334 (449)
|+| ==||+|+||.|+++.+.+ . ++++.+++---+-.++-|. ++..+|-++ .+..| .| ++.=+
T Consensus 6 IIa--EYNPFHnGH~y~i~~~k~----~-~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~---AL~~G---aD--LViEL 70 (388)
T PF05636_consen 6 IIA--EYNPFHNGHLYQIEQAKK----I-TGADVIIAVMSGNFVQRGEPAIIDKWTRAEM---ALKNG---AD--LVIEL 70 (388)
T ss_dssp -E-----TT--HHHHHHHHHHH--------TSSEEEEEE--TTSBTSSB-SS-HHHHHHH---HHHHT----S--EEEE-
T ss_pred eEE--eECCccHHHHHHHHHHhc----c-CCCCEEEEEECCCcccCCCeeeCCHHHHHHH---HHHcC---CC--EEEEC
Confidence 444 579999999999987643 2 1245444434444455554 677888763 33344 34 22334
Q ss_pred C------CCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCC
Q 013115 335 P------SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 371 (449)
Q Consensus 335 P------~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG 371 (449)
| .+-.||---=.++ ...||+++.+|-++..+.
T Consensus 71 P~~~a~qsA~~FA~gaV~lL-----~~lgvd~l~FGsE~~~~~ 108 (388)
T PF05636_consen 71 PVVYALQSAEYFARGAVSLL-----NALGVDYLSFGSESGDIE 108 (388)
T ss_dssp --G----------------------------------------
T ss_pred CCcccccccccccccccccc-----cccccccccccccccccc
Confidence 4 2334442222233 457899999999987664
No 60
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=68.04 E-value=25 Score=37.15 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=52.9
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC---CChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD---VPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gD---i~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
-=||.|+||.++++.|.+ . ++++....---+-.+.-|. ++...|. +- .+.. ... .++|++.-
T Consensus 9 eyNPfHnGH~y~i~~Ar~----~-~~~d~~i~~msgdf~qRgepai~~k~~r~--~~-aL~~-----g~D--~VIelP~~ 73 (358)
T COG1323 9 EYNPFHNGHQYHINKARE----E-FKGDEIIAVMSGDFTQRGEPAIGHKWERK--KM-ALEG-----GAD--LVIELPLE 73 (358)
T ss_pred ecCcccccHHHHHHHHHH----h-ccCCceEEeeecchhhcCCCccccHHHHH--hh-hhhc-----Cce--EEEEcceE
Confidence 579999999999987643 1 2234433322222333333 2333332 22 2221 112 34444444
Q ss_pred cCC---chHHHHHHHHHHhcCCcEeeecCCCCCCC
Q 013115 340 YAG---PTEVQWHAKARINAGANFYIVGRDPAGMG 371 (449)
Q Consensus 340 yAG---PREAllHAiiRkNyGcTHfIVGRDHAGvG 371 (449)
|+| |-=|.--..+-.+.||+.+.+|-.+-|+-
T Consensus 74 ~s~q~a~~fa~~av~il~~l~~~~i~fgse~~~i~ 108 (358)
T COG1323 74 RSGQGAPYFATRAVRILNALGGDDIAFGSPPMGIM 108 (358)
T ss_pred EecCCCchhhHHHHHHHHhcCCCeEEEeCCCCchH
Confidence 443 33345556778899999999999887764
No 61
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=62.76 E-value=15 Score=31.07 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred cCCCccchhHHHHHHHH
Q 013115 263 LRNPIHNGHALLMNDTR 279 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~ 279 (449)
+-+|+|.||..+++.+.
T Consensus 7 ~Fdp~H~GH~~l~~~a~ 23 (105)
T cd02156 7 EPGYLHIGHAKLICRAK 23 (105)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 45999999999987653
No 62
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=57.23 E-value=13 Score=37.91 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHh--CCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 013115 241 LSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (449)
Q Consensus 241 ~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vR 311 (449)
.|+.|+|+.... +.-++|--+=|=.-+|.||..|++.|.+ +.......+|+||+= ....+|+..+-|
T Consensus 5 ~~i~el~~~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~---~~d~vVVSIFVNP~Q-F~~~eD~~~YPR 73 (280)
T PF02569_consen 5 RTISELREWIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARA---ENDVVVVSIFVNPTQ-FGPNEDFDKYPR 73 (280)
T ss_dssp -SHHHHHHHHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHH---HSSEEEEEE---GGG-SSTTSHTTTS--
T ss_pred ccHHHHHHHHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHh---CCCEEEEEECcCccc-CCCcchhhhCCC
Confidence 478889888763 2334555555999999999999997754 322222358889984 445566665555
No 63
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=55.13 E-value=7.9 Score=39.33 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHh---CCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCCh-----HHHH
Q 013115 241 LSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPL-----DVRM 312 (449)
Q Consensus 241 ~tP~E~R~~f~~---~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~-----~vRv 312 (449)
.|++|+|+..+. .| ++|...=|=.=+|+||..|++.|.+.+ .. ....++.||.- ...++|++. +-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~ig~V~TmG~LH~GH~~LI~~a~~~a-~~--vVvtf~~nP~q-f~~~ed~~~y~~t~e~d~ 79 (277)
T cd00560 5 TTIAELRAWLRNWRAQG-KTIGFVPTMGALHEGHLSLVRRARAEN-DV--VVVSIFVNPLQ-FGPNEDLDRYPRTLEADL 79 (277)
T ss_pred ccHHHHHHHHHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHhC-CE--EEEEecCChhh-cCCcccccccCCCHHHHH
Confidence 478888888753 22 234443453349999999998876533 11 12357788885 344455332 3334
Q ss_pred HHHHHHHHcCCCCCCceEEEecCC-CcccCCchHHHHHHHHHHhcCCcEeeecCC
Q 013115 313 EQHSKVLEDGVLDPETTIVSIFPS-PMHYAGPTEVQWHAKARINAGANFYIVGRD 366 (449)
Q Consensus 313 r~y~all~~~ylP~~~~~L~ilP~-~MryAGPREAllHAiiRkNyGcTHfIVGRD 366 (449)
+-.+.+ | -+ .+ ..|. +-.|+.. -+ .++-...++.+.++|..
T Consensus 80 ~ll~~~---G---vD-~v--F~p~~~~m~p~~--f~--~~~v~~~~~~~il~G~~ 121 (277)
T cd00560 80 ALLEEA---G---VD-LL--FAPSVEEMYPEG--LF--STFVDVGPLSEVLEGAS 121 (277)
T ss_pred HHHHHC---C---CC-EE--ECCCHHHcCCCC--Cc--eEEEecCCCceEEecCC
Confidence 333322 1 12 11 3342 2333322 01 23334478899999983
No 64
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=54.58 E-value=7.8 Score=39.54 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhCC-CCeEEEe-ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 013115 241 LSPQQLRKEFDNRQ-ADAIFAF-QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (449)
Q Consensus 241 ~tP~E~R~~f~~~g-w~~VvaF-QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~ 307 (449)
.|++|+|+...+.. -..-+|| =|=.=+|+||..|++.+.+.+ +. ....++.||.- ...++|++
T Consensus 5 ~~~~~l~~~~~~~~~~g~~ig~VpTmG~LH~GH~~LI~~a~~~a-~~--vVvTffvnP~q-f~~~ed~~ 69 (282)
T TIGR00018 5 ETIPLLRQYIRQLRMEGKTVGFVPTMGNLHDGHMSLIDRAVAEN-DV--VVVSIFVNPMQ-FGPNEDLE 69 (282)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHhC-Ce--EEEEecCChHH-hCCccccc
Confidence 47889998875311 1223444 243339999999998876533 11 12347788875 34445533
No 65
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=51.79 E-value=23 Score=36.34 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=41.8
Q ss_pred CCHHHHHHHHH--hCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 013115 241 LSPQQLRKEFD--NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (449)
Q Consensus 241 ~tP~E~R~~f~--~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vR 311 (449)
.|.+|+|+..+ ++.-++|.-.=|=+-+|.||..|++.|.+ +........|+||+ -..-.+|++..-|
T Consensus 5 ~ti~~lr~~~~~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~---~~d~VVVSIFVNP~-QFg~~EDl~~YPR 73 (285)
T COG0414 5 TTIAELRQAIKALRKEGKRVGLVPTMGNLHEGHLSLVRRAKK---ENDVVVVSIFVNPL-QFGPNEDLDRYPR 73 (285)
T ss_pred ehHHHHHHHHHHHHHcCCEEEEEcCCcccchHHHHHHHHHhh---cCCeEEEEEEeChh-hcCCchhhhhCCC
Confidence 58888987765 12223455555999999999999987643 32222345777777 2334455554444
No 66
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=51.66 E-value=17 Score=40.09 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 013115 241 LSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (449)
Q Consensus 241 ~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vR 311 (449)
.|++|+|+......-++|.-+=|=.-+|.||..|++.|.+ +.......+|+||+= ...++|+...-|
T Consensus 5 ~~~~~l~~~~~~~~~~~ig~VPTMG~LH~GHlsLi~~A~~---~~d~vVvSIFVNP~Q-F~~~eD~~~YPr 71 (512)
T PRK13477 5 RTVAGLRAWLRQQRSETIGFVPTMGALHQGHLSLIRRARQ---ENDVVLVSIFVNPLQ-FGPNEDLERYPR 71 (512)
T ss_pred ecHHHHHHHHHHhcCCcEEEECCCcchhHHHHHHHHHHHH---hCCEEEEEEccCccc-CCCchhhhhCCC
Confidence 4789999998753223565566999999999999987754 211112356777773 234455544333
No 67
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=51.26 E-value=10 Score=38.64 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHh---CCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 013115 241 LSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (449)
Q Consensus 241 ~tP~E~R~~f~~---~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~ 307 (449)
.|+.|+|+.+.+ .|-+-.++.---| +|+||..|++.+.+.+ ... ...++.||.- ...++|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~i~~v~tmG~-lH~GH~~Li~~a~~~a-~~v--VvTf~~~P~q-f~~~~~~~ 69 (281)
T PRK00380 5 TTIAELRAALRRWRREGKRIGLVPTMGA-LHEGHLSLVREARAEA-DIV--VVSIFVNPLQ-FGPNEDLD 69 (281)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEEccCc-eeHHHHHHHHHHHHhC-CEE--EEeCCCCHHH-hCCCcccc
Confidence 468888888753 2322222222344 9999999998776533 110 1235667764 23344533
No 68
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=50.07 E-value=34 Score=29.08 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred EEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccc------hhHHHHHHHHHHHHHcCCCCCe
Q 013115 218 WLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHN------GHALLMNDTRRRLLEMGYKNPI 291 (449)
Q Consensus 218 ~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHR------aHe~L~r~a~~~ale~g~~~~~ 291 (449)
+||+|+++++. ++ -+..-.+.-+.+.++|.. |+ ||.+. -.+.-|+.+++.+.. ||.
T Consensus 1 iYIaGPmtG~~------~~--N~~~f~~~a~~L~~~G~~-vv-----nPa~~~~~~~~~~~~ym~~~l~~L~~----cD~ 62 (92)
T PF14359_consen 1 IYIAGPMTGLP------DY--NRPAFNAAAKRLRAKGYE-VV-----NPAELGIPEGLSWEEYMRICLAMLSD----CDA 62 (92)
T ss_pred CeEeCCcCCCc------ch--HHHHHHHHHHHHHHCCCE-Ee-----CchhhCCCCCCCHHHHHHHHHHHHHh----CCE
Confidence 48999999753 11 133445566667778843 22 78777 455666766654442 577
Q ss_pred EEEccccCCCCCCCCChHHH
Q 013115 292 LLLHPLGGFTKADDVPLDVR 311 (449)
Q Consensus 292 lLLhPlvG~tK~gDi~~~vR 311 (449)
+.+ +.||..+-.-..|..
T Consensus 63 i~~--l~gWe~S~GA~~E~~ 80 (92)
T PF14359_consen 63 IYM--LPGWENSRGARLEHE 80 (92)
T ss_pred EEE--cCCcccCcchHHHHH
Confidence 776 458888776544443
No 69
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=48.75 E-value=18 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=19.4
Q ss_pred EecChHHHhhcCC---------CCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKERIGS---------TTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~~l~~---------G~~vaL~d~eG~~vAiL~V~e 184 (449)
++++++++..+.- +..++..+++|+++|+++-..
T Consensus 4 ~~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 4 RELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp EE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEET
T ss_pred eECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEccC
Confidence 5667766665533 345667789999999996543
No 70
>PLN02660 pantoate--beta-alanine ligase
Probab=43.68 E-value=21 Score=36.58 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhC-CCCeEEEee-cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC
Q 013115 241 LSPQQLRKEFDNR-QADAIFAFQ-LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD 305 (449)
Q Consensus 241 ~tP~E~R~~f~~~-gw~~VvaFQ-TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gD 305 (449)
.|++|+|+...+. .-.+-+||- |=.=+|+||..|++.+.+.+- . ....++.||.- ....+|
T Consensus 4 ~~~~~lr~~~~~~~~~g~~igfVpTmG~LH~GH~~LI~~a~~~a~-~--vVvTffvnP~q-f~~~ed 66 (284)
T PLN02660 4 RDKAAMRAWSRAQRAQGKRIALVPTMGYLHEGHLSLVRAARARAD-V--VVVSIYVNPGQ-FAPGED 66 (284)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEEcCchhhHHHHHHHHHHHHhCC-E--EEEEEeCChHH-cCCccc
Confidence 4788888887531 112233333 433399999999987755321 1 12458889986 444355
No 71
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=41.71 E-value=18 Score=32.79 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=43.6
Q ss_pred cCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEe
Q 013115 91 ESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALL 170 (449)
Q Consensus 91 ~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wpiPItL~V~~e~a~~l~~G~~vaL~ 170 (449)
+++....+.+++++-|-.=.+.+ =||+.++|+++- .+.|.+ ++.+.-|++|..+.+.
T Consensus 60 ~kve~a~ie~~~~q~lY~dg~~~-----~FMD~etyeq~~--------------v~~~~~----~d~~~~l~eg~~v~v~ 116 (131)
T COG0231 60 DKVEVAIVERKTAQYLYIDGDFY-----VFMDLETYEQYE--------------LPKDQI----GDAAKFLKEGMEVEVL 116 (131)
T ss_pred CEEEEeEEeeeeEEEEEcCCCeE-----EEccCCCceEEE--------------ecchhh----hhHHHhcCCCCEEEEE
Confidence 44555666666655211111211 399999999985 233433 6778889999998887
Q ss_pred CCCCCEEEE
Q 013115 171 GPTGDLIGI 179 (449)
Q Consensus 171 d~eG~~vAi 179 (449)
-.+|+++++
T Consensus 117 ~~~g~~i~v 125 (131)
T COG0231 117 LYNGEPIAV 125 (131)
T ss_pred EECCEEEEE
Confidence 679999886
No 72
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.18 E-value=57 Score=27.58 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+.++.++|++ |+.||.|.|....|++.+.+.+++--
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i 70 (116)
T cd02786 33 LLIHPADAAARGIADGDLVVVFNDRGSVTLRAKVTDDV 70 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCC
Confidence 4567777664 68999999999899999988887743
No 73
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=39.07 E-value=1.4e+02 Score=31.37 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=53.6
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeE--EEcccc--C-CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPIL--LLHPLG--G-FTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~l--LLhPlv--G-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
.+|++-=+-+-+|.||..++++|. +.| +.| -+||-- - .+.+-=.+.+-|++..+++- +. +.++
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk----~~g---~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~---~V--D~Vv 79 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQAR----ALG---DELFVGCHSDEEIMRNKGPPVMHQEERYEALRACK---WV--DEVV 79 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHH----HhC---CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcC---Cc--cEEE
Confidence 567766689999999999997663 443 323 334321 0 01112677788888766542 11 2122
Q ss_pred EEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCC
Q 013115 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (449)
Q Consensus 331 L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (449)
..+|....++ .+ +.++|.++++|-|..
T Consensus 80 -~~~p~~~~~~---------fI-~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 80 -EGYPYTTRLE---------DL-ERLECDFVVHGDDIS 106 (353)
T ss_pred -ECCCCCchHH---------HH-HHhCCCEEEECCCCC
Confidence 2245432222 22 779999999999976
No 74
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=37.00 E-value=58 Score=39.59 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=60.3
Q ss_pred cCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCC-CCCEEEEEEeccccccCHHH
Q 013115 114 ASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGP-TGDLIGILRSIEIYKHNKEE 192 (449)
Q Consensus 114 fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wpiPItL~V~~e~a~~l~~G~~vaL~d~-eG~~vAiL~V~evy~~Dk~~ 192 (449)
|.+++.+++.+.|.+|- |. ..-+.+.|++++.+.+..++...|+++ +|++...+.-.|+|. +
T Consensus 377 f~~yd~~~~~e~y~tv~---------~q----N~N~SV~VtDeFM~aVe~d~~w~L~~p~~gkv~ktV~AReLw~----k 439 (1220)
T PRK07562 377 FPTYDTDWDSEAYLTVS---------GQ----NSNNSVRVTDEFLRAVENDGDWNLTARTDGKVAKTLKARDLWE----K 439 (1220)
T ss_pred ccccccccccchhcccc---------cc----cccceeccCHHHHHHHHCCCCeeeeccCCCceeeEeeHHHHHH----H
Confidence 77899999999999985 11 123567899999999999999999764 689999999999993 4
Q ss_pred HHHHhhCCCCCCCcchh
Q 013115 193 RIARTWGTTAAGLPYVE 209 (449)
Q Consensus 193 ea~~VfGT~d~~HPgV~ 209 (449)
.++..|-|.| ||+.
T Consensus 440 I~~aawetGd---PgI~ 453 (1220)
T PRK07562 440 IGYAAWASAD---PGLQ 453 (1220)
T ss_pred HHHHHHHHCC---ceEE
Confidence 6777777666 7765
No 75
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.04 E-value=71 Score=27.58 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=27.5
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+.++.++|++ |+.||.|.|....|.+.+.+.+++-
T Consensus 35 v~inp~dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~~ 71 (130)
T cd02781 35 AEINPETAAKLGIADGDWVWVETPRGRARQKARLTPG 71 (130)
T ss_pred EEECHHHHHHcCCCCCCEEEEECCCCEEEEEEEECCC
Confidence 4567777665 5899999999888998888877663
No 76
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=35.70 E-value=60 Score=32.28 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=46.1
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHc-CCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHH
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEM-GYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVL 319 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~-g~~~~~lLLhPlvG-~tK~gDi~~~vRvr~y~all 319 (449)
.++|++.-||+-..|..|+..|.+.+-+. +|....=.+.|+.. -+|.+-+|+..|++.-|++-
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt 74 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELAT 74 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhh
Confidence 47889999999999999999886655344 33333345678863 35668999999998777654
No 77
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=35.16 E-value=79 Score=27.29 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=29.8
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIYK 187 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy~ 187 (449)
+.++.++|++ |+.||.|.|....|++.+...+++--.
T Consensus 34 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~a~~~~~v~ 72 (124)
T cd02785 34 VKINPIDAAARGIAHGDLVEVYNDRGSVVCKAKVDDGIQ 72 (124)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCEEEEEEEECCCcC
Confidence 4677777764 679999999998999999998877443
No 78
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.01 E-value=78 Score=27.22 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.0
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+.++.++|++ |+.||.|.|....|.+.+...+++-
T Consensus 32 v~i~p~~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~ 68 (121)
T cd02794 32 VWINPLDAAARGIKDGDRVLVFNDRGKVIRPVKVTER 68 (121)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCC
Confidence 4567777664 6799999999989999988887764
No 79
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.89 E-value=97 Score=26.46 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=27.6
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~e 184 (449)
+.++.++|++ |+.||.|.|....|.+.+...+++
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~ 68 (106)
T cd02789 33 CEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENE 68 (106)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 5577777774 679999999988888888888776
No 80
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.37 E-value=1.3e+02 Score=25.71 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=28.1
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+.++.++|++ |+.||.|.|....|.+.+...+++-.
T Consensus 32 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~v~v~~~v 69 (123)
T cd02778 32 LWINPETAARLGIKDGDRVEVSSARGKVTGKARLTEGI 69 (123)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCcEEEEEEEcCCc
Confidence 4567766664 67899999998889999888887633
No 81
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=28.67 E-value=99 Score=25.75 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=27.0
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~e 184 (449)
+.++.++|++ |+.||.|.|....|.+.+.+.+++
T Consensus 31 v~inp~dA~~lGi~~Gd~V~v~s~~G~i~~~v~v~~ 66 (96)
T cd02788 31 ARLSPADAARLGLADGDLVEFSLGDGTLTLPVQISK 66 (96)
T ss_pred EEECHHHHHHcCCCCCCEEEEEECCeEEEEEEEECC
Confidence 4567777765 578999999988888888887766
No 82
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.00 E-value=89 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=27.7
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+-++.++|++ |+.||.|.|....|++.+.+.+++--
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 37 VEINPEDAKRLGIEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 3456666665 68999999998889888888877644
No 83
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=27.81 E-value=6.8e+02 Score=25.69 Aligned_cols=142 Identities=19% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCcEEEe-eeEEEecCCCCCCCcCcCCCCHHHHHHHHH-------hCCCCeEEEeecCCCccchh--HHHHHHHHHHHHH
Q 013115 215 AGNWLVG-GDLEVLKPIKYNDGLDHYRLSPQQLRKEFD-------NRQADAIFAFQLRNPIHNGH--ALLMNDTRRRLLE 284 (449)
Q Consensus 215 ~g~~~vg-G~v~~l~~~~~~~~f~~~r~tP~E~R~~f~-------~~gw~~VvaFQTRNPlHRaH--e~L~r~a~~~ale 284 (449)
.|+|.|. |.......+.. +.--|+-++.|..+..+ ..+-..|++ +..|.+.+. |.|. ++..
T Consensus 120 ~g~~iv~LG~F~p~~~~d~--~p~~y~dS~~~~~~i~~aL~~f~~~~~~~cis~--~~r~~~~~sv~~~L~-----aL~~ 190 (282)
T PF12818_consen 120 PGQYIVCLGDFEPTPGPDT--PPYTYRDSGLEQNKILQALQQFYSTLESPCISG--SIRPPGPASVKEHLL-----ALCH 190 (282)
T ss_pred CCCEEEEecCCcccCCCCC--CCcccccCHHHHHHHHHHHHHHHHhcCCCcEEe--ecCCCCchhHHHHHH-----HhcC
Confidence 5666555 77665543221 22358889999886654 333356888 667776653 3332 2222
Q ss_pred cCCCCCeEEEccccCCCCCC--CCChHHHHHHHHHHHHcCCCCCCc-eEEEecCCCcc----cC--CchHHHHHHHHHHh
Q 013115 285 MGYKNPILLLHPLGGFTKAD--DVPLDVRMEQHSKVLEDGVLDPET-TIVSIFPSPMH----YA--GPTEVQWHAKARIN 355 (449)
Q Consensus 285 ~g~~~~~lLLhPlvG~tK~g--Di~~~vRvr~y~all~~~ylP~~~-~~L~ilP~~Mr----yA--GPREAllHAiiRkN 355 (449)
.+ +..+.+.-|....+.. .++.+ ...+|+.++++.+|.... .++.++...-. -+ +|.|++-- +...
T Consensus 191 ~~--G~~l~lS~LP~~i~~~L~~~~~~-~~~~~~~~i~~~FLNv~~~~vfl~V~n~~~~~~~~~~~~~l~~L~~--~c~~ 265 (282)
T PF12818_consen 191 PG--GARLDLSALPQEIVSQLKRSPPE-NREHNEEIIKQHFLNVYCSVVFLVVSNTPIDTNTDQGFGPLDALKR--ACRL 265 (282)
T ss_pred CC--ceEEEhhcCCHHHHHHhccCCch-hHHHHHHHHHhhhhccccceEEEEEecCCCCCcccccccHHHHHHH--HHHH
Confidence 21 2445554441111110 11222 234488888877777653 34455554442 22 46666643 3589
Q ss_pred cCCcEeeecCCCCCC
Q 013115 356 AGANFYIVGRDPAGM 370 (449)
Q Consensus 356 yGcTHfIVGRDHAGv 370 (449)
|||+..|+||-....
T Consensus 266 ~gc~~~iLG~t~~~~ 280 (282)
T PF12818_consen 266 CGCPVHILGRTCPEP 280 (282)
T ss_pred CCCCEEEEeeeccCC
Confidence 999999999954433
No 84
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.54 E-value=3.6e+02 Score=26.78 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=56.9
Q ss_pred CCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHH
Q 013115 172 PTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFD 251 (449)
Q Consensus 172 ~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~ 251 (449)
.+|+..-|++|+|.--.+-.-.+...||...-++.. -.+|...|+-..+ + .-.++=+.+.
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~-------~~~wv~~~~apai-----p--------~al~l~~~l~ 133 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTA-------FWLWLGKGAAPAL-----P--------EGLKLYQKII 133 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHH-------HHHHHHcCCCCCC-----H--------HHHHHHHHHH
Confidence 368899999999998888888888888843211111 1223223322111 0 1234445667
Q ss_pred hCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCC-CeEEEccc
Q 013115 252 NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKN-PILLLHPL 297 (449)
Q Consensus 252 ~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~-~~lLLhPl 297 (449)
++|++-++. |..+- .++ ..|.+.+.+.|+.+ +.|++.+.
T Consensus 134 ~~G~~Vf~l--TGR~e--~~r---~~T~~nL~~~G~~~~~~LiLR~~ 173 (229)
T TIGR01675 134 ELGIKIFLL--SGRWE--ELR---NATLDNLINAGFTGWKHLILRGL 173 (229)
T ss_pred HCCCEEEEE--cCCCh--HHH---HHHHHHHHHcCCCCcCeeeecCC
Confidence 889885555 65442 111 22445566778775 67888765
No 85
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.14 E-value=1.1e+02 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=28.5
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+.++.++|++ |+.||.|.+....|++.+.+.+++--
T Consensus 37 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~v~~~i 74 (122)
T cd02792 37 VEISPELAAERGIKNGDMVWVSSPRGKIKVKALVTDRV 74 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCCc
Confidence 4456667665 57899999998899999999887744
No 86
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=27.07 E-value=35 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=16.6
Q ss_pred HhhcCCCCeEEEeCCCCCEEEE
Q 013115 158 KERIGSTTNVALLGPTGDLIGI 179 (449)
Q Consensus 158 a~~l~~G~~vaL~d~eG~~vAi 179 (449)
+.=|+.|..+.+.-.+|+++++
T Consensus 37 ~~~L~e~~~v~v~~~~~~~i~v 58 (61)
T cd04470 37 AKFLKEGMEVIVLFYNGEPIGV 58 (61)
T ss_pred HhhCcCCCEEEEEEECCEEEEE
Confidence 3447889888876568998886
No 87
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=26.78 E-value=1.2e+02 Score=31.25 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=62.0
Q ss_pred eEEEecC-CCcccCCchHHHHH-HHHHHhcCCcEeeecCCCCCCCCCC---CCCCCCCC--------ccchhhhhh----
Q 013115 329 TIVSIFP-SPMHYAGPTEVQWH-AKARINAGANFYIVGRDPAGMGHPT---EKRDLYDP--------DHGKKVLSM---- 391 (449)
Q Consensus 329 ~~L~ilP-~~MryAGPREAllH-AiiRkNyGcTHfIVGRDHAGvG~~~---~~~~~Yd~--------~~aq~i~~~---- 391 (449)
..-.+.| +-++|+||.-|--. ++.. +-==|-+|+|.||-|.|.+- +...+=.| .-++.+...
T Consensus 46 ~~~~v~PHAGy~ySG~taa~~y~~l~~-~~~~~vVIlGPnHtg~g~~vsv~~~g~w~TPLG~v~vD~e~~~~l~~~~~~~ 124 (279)
T COG1355 46 AIGIVVPHAGYRYSGPTAAHVYSALDE-GEPDTVVILGPNHTGLGSPVSVSPEGEWETPLGDVKVDSELAEELVKHSGII 124 (279)
T ss_pred ceEEEcCCCCcEecchhHHHHHHHhhc-CCCCEEEEECCCCCCCCCceEEecCCccccCCCCeeeCHHHHHHHHHhcCCC
Confidence 4456777 88999999987555 5555 33348899999999999741 11112111 111222221
Q ss_pred ------ccCccccccchHHHHHHHhCCCCC-C--CCCCchhHHHHHHHHHHhhhhhcc
Q 013115 392 ------ALGLEKLNILPFRMRTFARSGENP-P--DGFMCPGGWKVLVQYYESLQAEEA 440 (449)
Q Consensus 392 ------~~g~~~l~i~p~~vR~~Lr~G~~p-P--~~F~rPeV~~iL~~~y~~~~~~~~ 440 (449)
+..+-+|++.-=++.-++....++ | =|+--++|+..+.+..-+..++..
T Consensus 125 ~~D~~ah~~EHSiEvQlPFLqy~f~~~fKIVPi~m~~q~~~~a~~ig~~i~k~i~e~~ 182 (279)
T COG1355 125 DLDELAHLYEHSIEVQLPFLQYLFGDEFKIVPICMGMQDKEVARDIGRAIAKVIKELG 182 (279)
T ss_pred CchhhhhhhhceEEeehHHHHHHccCCcEEEeEEEecccHHHHHHHHHHHHHHHhhcC
Confidence 011334555533344444433332 2 245567787777777766666554
No 88
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=26.56 E-value=1.2e+02 Score=25.77 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.5
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+-++.++|++ ++.||.|.+....|.+.+.+.+++-
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (122)
T cd02791 37 VEIHPEDAARLGLKEGDLVRVTSRRGEVVLRVRVTDR 73 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 4567777765 5799999999888988888777663
No 89
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=26.52 E-value=3.6e+02 Score=28.20 Aligned_cols=147 Identities=20% Similarity=0.281 Sum_probs=85.0
Q ss_pred CCHHHHHHHHH----------hCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHH
Q 013115 241 LSPQQLRKEFD----------NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDV 310 (449)
Q Consensus 241 ~tP~E~R~~f~----------~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~v 310 (449)
.+..|..+.-+ .+|||+||+ +-.|.----. .+++.+++.| .++| -.+| |.||---
T Consensus 135 Y~~eea~~l~~~~gw~~keD~~rG~RRVVp--SP~P~~IvE~----~~Ik~L~~~g----~vVI-~~GG----GGIPVv~ 199 (312)
T COG0549 135 YSEEEAEELAKEYGWVFKEDAGRGYRRVVP--SPKPVRIVEA----EAIKALLESG----HVVI-AAGG----GGIPVVE 199 (312)
T ss_pred cCHHHHHHHHhhcCcEEEecCCCCeeEecC--CCCCccchhH----HHHHHHHhCC----CEEE-EeCC----CCcceEe
Confidence 35666655444 478999999 6666533222 2456677764 3444 3333 4444211
Q ss_pred H---HHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchh
Q 013115 311 R---MEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKK 387 (449)
Q Consensus 311 R---vr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~ 387 (449)
. .+..++++ .|| +=-|+++.+..|+-||+=-|--+|-. -|+.-. |+
T Consensus 200 ~~~~~~GVeAVI-----DKD-------------------lasalLA~~i~AD~liILTdVd~Vy~------n~gkp~-q~ 248 (312)
T COG0549 200 EGAGLQGVEAVI-----DKD-------------------LASALLAEQIDADLLIILTDVDAVYV------NFGKPN-QQ 248 (312)
T ss_pred cCCCcceeeEEE-----ccH-------------------HHHHHHHHHhcCCEEEEEeccchhee------cCCCcc-ch
Confidence 1 22233333 344 23478899999999999887666653 333322 22
Q ss_pred hhhhccCccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHHHHHhhhhhccccCCccccC
Q 013115 388 VLSMALGLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQYYESLQAEEATQQPAILTS 449 (449)
Q Consensus 388 i~~~~~g~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~~y~~~~~~~~~~~~~~~~~ 449 (449)
.++ .+.+-.|++++++|+- +++=|-|+|-+.+ +|.++ +..++++||
T Consensus 249 ~L~--------~v~~~e~~~yl~eg~F-a~GSM~PKVeAai-----~Fv~~--~gk~A~Its 294 (312)
T COG0549 249 ALD--------RVTVDEMEKYLAEGQF-AAGSMGPKVEAAI-----SFVEN--TGKPAIITS 294 (312)
T ss_pred hhc--------ccCHHHHHHHHhcCCC-CCCCccHHHHHHH-----HHHHc--CCCceEECc
Confidence 221 2335569999999986 4577889986544 44444 556666664
No 90
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=25.70 E-value=1e+02 Score=24.89 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=26.3
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 184 (449)
+-++.++++ .|+.||.|.|.+..|.+.+.+.+.+
T Consensus 25 v~~~~~da~~lgl~~Gd~v~v~~~~g~~~~~v~~~~ 60 (101)
T cd02775 25 VEINPEDAAALGIKDGDLVRVESRRGSVVLRAKVTD 60 (101)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCcEEEEEEEECC
Confidence 345666665 4678999999988899888887665
No 91
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=25.60 E-value=71 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=26.9
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+-++.++|++ |+.||.|.|..+.|.+.+...+++-
T Consensus 32 v~inp~dA~~~Gi~~Gd~V~v~s~~G~v~~~v~~~~~ 68 (110)
T PF01568_consen 32 VEINPEDAAKLGIKDGDWVRVSSPRGSVEVRVKVTDG 68 (110)
T ss_dssp EEEEHHHHHHCT--TTCEEEEEETTEEEEEEEEEETT
T ss_pred EEEcHHHHHHhcCcCCCEEEEEeccceEeeeeEEecC
Confidence 3466777664 6799999999889999999988873
No 92
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=25.56 E-value=1e+02 Score=26.30 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=28.7
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+.++.++|++ |+.||.|.|....|++.+.+.+++--
T Consensus 35 v~in~~dA~~lgi~~Gd~V~v~s~~G~i~~~~~~~~~i 72 (115)
T cd02779 35 IEVNPEDAKREGLKNGDLVEVYNDYGSTTAMAYVTNTV 72 (115)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 4566666664 68999999998899999998887754
No 93
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.47 E-value=98 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=27.8
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+-++.++|++ |+.||.|.|....|++.+.+.+++--
T Consensus 37 v~inp~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~i 74 (120)
T cd00508 37 VEIHPEDAARLGIKDGDLVRVSSRRGSVVVRARVTDRV 74 (120)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 3466666665 67999999998889988888877643
No 94
>PRK04980 hypothetical protein; Provisional
Probab=24.99 E-value=87 Score=27.54 Aligned_cols=31 Identities=0% Similarity=-0.037 Sum_probs=26.6
Q ss_pred hhcCCCCeEEE-eCCCCCEEEEEEeccccccC
Q 013115 159 ERIGSTTNVAL-LGPTGDLIGILRSIEIYKHN 189 (449)
Q Consensus 159 ~~l~~G~~vaL-~d~eG~~vAiL~V~evy~~D 189 (449)
...++||.+.+ ++.+|++++.++|.++-...
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~ 61 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVT 61 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEEe
Confidence 45889999998 77889999999999988663
No 95
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=24.49 E-value=1e+02 Score=30.76 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=38.3
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
|=.|-.+++-=|||-+.+..|++.+-|.|. ..| +++|.++|+ .||+++.+
T Consensus 54 V~~f~~~~~~RRGHVeFI~aAL~~M~efgv---------------~kD------L~~Y~~LLD--vFPKg~fv 103 (228)
T PF06239_consen 54 VDIFKQRDVRRRGHVEFIYAALKKMDEFGV---------------EKD------LEVYKALLD--VFPKGKFV 103 (228)
T ss_pred HHHHHhcCCCCcChHHHHHHHHHHHHHcCC---------------ccc------HHHHHHHHH--hCCCCCcc
Confidence 555667888889999999988887777651 112 489999997 99999544
No 96
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=24.48 E-value=71 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=22.6
Q ss_pred eEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEe
Q 013115 148 PIVLAIDDETKERIGSTTNVALLGPTGDLIGILRS 182 (449)
Q Consensus 148 PItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V 182 (449)
|=+..++++ +++||.|.+.+.+|+.+|+=..
T Consensus 22 ~GV~~~~~~----f~~gd~V~i~~~~g~~ia~G~a 52 (74)
T PF01472_consen 22 PGVVEVDGD----FRKGDEVAIVDEDGEVIAVGRA 52 (74)
T ss_dssp GGEEEEETT------TTSEEEEEETTSSEEEEEEE
T ss_pred HHhEECCCC----cCCCCEEEEEcCCCeEEEEEEE
Confidence 545566553 5789999999999999998664
No 97
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.12 E-value=1.4e+02 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=27.8
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~e 184 (449)
+.+..++|++ |+.||.|.+..+.|.+.+.+.+++
T Consensus 34 v~inp~dA~~~GI~dGd~V~v~s~~G~~~~~a~v~~ 69 (156)
T cd02783 34 LYMHPKTAKELGIKDGDWVWVESVNGRVKGQARFTE 69 (156)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeeEEEEEEECC
Confidence 4567777664 689999999988999998888876
No 98
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.91 E-value=1e+02 Score=27.99 Aligned_cols=34 Identities=9% Similarity=-0.108 Sum_probs=27.0
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~e 184 (449)
+.++.++|+ .|+.||.|.|....|.+.+...|.+
T Consensus 40 v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~ 75 (137)
T cd02784 40 ALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQP 75 (137)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECC
Confidence 445666665 5789999999988899988888776
No 99
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=23.65 E-value=1.1e+02 Score=27.12 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=28.4
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 013115 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (449)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~evy 186 (449)
+.++.++|+ .|+.||.|.|....|.+.+.+.+++--
T Consensus 32 v~inp~dA~~lgI~~Gd~V~v~s~~G~i~~~v~i~~~i 69 (143)
T cd02780 32 VWINPEDAAKLGIKTGDRVRVVTPGGSVVGKAKVTEGV 69 (143)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCceEEEEEEECCCc
Confidence 456666666 468999999998899999888887643
No 100
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.58 E-value=1.1e+02 Score=25.96 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=28.3
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEecc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIE 184 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~e 184 (449)
+.++.++|++ |+.||.|.+....|.+.+...+++
T Consensus 33 v~i~p~dA~~lgI~dGd~V~v~s~~G~i~~~a~v~~ 68 (112)
T cd02787 33 VFMNPDDIARLGLKAGDRVDLESAFGDGQGRIVRGF 68 (112)
T ss_pred EEECHHHHHHhCCCCCCEEEEEecCCCCeEEEEecc
Confidence 5667777665 689999999999999998888877
No 101
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=23.54 E-value=88 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.1
Q ss_pred cCCCCeEEEeCCCCCEEEEEEe
Q 013115 161 IGSTTNVALLGPTGDLIGILRS 182 (449)
Q Consensus 161 l~~G~~vaL~d~eG~~vAiL~V 182 (449)
+++|+.|++.|.+|+.+|+-..
T Consensus 31 ~~~g~~V~v~~~~g~~vg~G~~ 52 (77)
T smart00359 31 IKEGDVVVIVDEKGEPLGIGLA 52 (77)
T ss_pred cCCCCEEEEEcCCCCEEEEEEE
Confidence 6789999999989999998763
No 102
>PLN02540 methylenetetrahydrofolate reductase
Probab=23.39 E-value=1.1e+03 Score=26.66 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=97.2
Q ss_pred cccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhC-CCCeEEEee
Q 013115 184 EIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNR-QADAIFAFQ 262 (449)
Q Consensus 184 evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~-gw~~VvaFQ 262 (449)
|+|++..+.-.+++|.+.| ++ ...++-+|. |+ |. .-...+-...++-+.+++. |..+|.=+-
T Consensus 4 EfFPPKt~~g~~nL~~~~~-------rl-~~~~P~Fis--VT------~g-AgGst~~~Tl~la~~lq~~~Gie~i~HLT 66 (565)
T PLN02540 4 EFFPPKTEEGVDNLFERMD-------RM-VAHGPLFCD--IT------WG-AGGSTADLTLDIANRMQNMICVETMMHLT 66 (565)
T ss_pred EEECCCCchHHHHHHHHHH-------HH-hccCCCEEE--eC------CC-CCCCcHHHHHHHHHHHHHhcCCCeeEEee
Confidence 7888888887888887543 22 234444443 11 21 1123344566666666655 888876666
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC--------CCCChHHHHHHHHHHHHcCCCCC-CceEEEe
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA--------DDVPLDVRMEQHSKVLEDGVLDP-ETTIVSI 333 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~--------gDi~~~vRvr~y~all~~~ylP~-~~~~L~i 333 (449)
+||=- -+.|+. .+..|.+.|..+ .|.| -+...+. +++++. +.-.+.+.+ .+.. -.+-++.
T Consensus 67 Crd~n---~~~L~~-~L~~a~~~GIrN-ILAL--rGDpp~~~d~~~~~~g~F~~A--~dLV~~Ir~--~~gd~f~IgVAG 135 (565)
T PLN02540 67 CTNMP---VEKIDH-ALETIKSNGIQN-ILAL--RGDPPHGQDKFVQVEGGFACA--LDLVKHIRS--KYGDYFGITVAG 135 (565)
T ss_pred ecCCC---HHHHHH-HHHHHHHCCCCE-EEEE--CCCCCCCCCCcCCCCCCcccH--HHHHHHHHH--hCCCCceEEEeC
Confidence 66533 224433 445566778554 3333 1112222 233321 111222222 1222 1233577
Q ss_pred cCCCccc---CC------chHHHHHHHHHHh-cCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCcc-c----c
Q 013115 334 FPSPMHY---AG------PTEVQWHAKARIN-AGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLE-K----L 398 (449)
Q Consensus 334 lP~~Mry---AG------PREAllHAiiRkN-yGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~-~----l 398 (449)
+|.---- .+ ..+..+..+-+|- .||+ ||+-+ .|||...-.+.+++..... . .
T Consensus 136 YPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd-FiITQ------------lfFD~d~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 136 YPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGAD-LIITQ------------LFYDTDIFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred CCCCCCcccccccccCCCChHHHHHHHHHHHHcCCC-EEeec------------cccCHHHHHHHHHHHHhcCCCCCEEe
Confidence 7731111 11 1224556666665 8999 55544 5999877667666542110 1 2
Q ss_pred ccchHH----HHHHH-hCCCCCCCCCC
Q 013115 399 NILPFR----MRTFA-RSGENPPDGFM 420 (449)
Q Consensus 399 ~i~p~~----vR~~L-r~G~~pP~~F~ 420 (449)
+|.|+. ++++. -.|..+|+|+.
T Consensus 203 GImPI~S~k~l~r~~~l~Gi~IP~~i~ 229 (565)
T PLN02540 203 GIMPINNYKGFLRMTGFCKTKIPAEIT 229 (565)
T ss_pred eecccCCHHHHHHHHhccCCcCCHHHH
Confidence 333444 22222 35788876654
No 103
>PRK13599 putative peroxiredoxin; Provisional
Probab=23.31 E-value=3.8e+02 Score=25.94 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=54.3
Q ss_pred cceeEEEecChHHHhhcCC---------CCeEEEeCCCCCEEEEEEeccccccCHHHH--HHHhhCCCCCCCcchhhhcc
Q 013115 145 MSLPIVLAIDDETKERIGS---------TTNVALLGPTGDLIGILRSIEIYKHNKEER--IARTWGTTAAGLPYVEEVIT 213 (449)
Q Consensus 145 wpiPItL~V~~e~a~~l~~---------G~~vaL~d~eG~~vAiL~V~evy~~Dk~~e--a~~VfGT~d~~HPgV~~~~~ 213 (449)
.++||+.|.+.+.++.+.. --.+-++|++|++..+......=..+-++- +-+-..++|. | +|+.
T Consensus 91 i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~-~-~~~~--- 165 (215)
T PRK13599 91 IPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQ-Y-GVAL--- 165 (215)
T ss_pred CceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhh-c-CCCc---
Confidence 4679999888877776653 134677899999999875433222233322 2222334442 2 4442
Q ss_pred cCCcEEE----eeeEEEecCCCCCCCcCcCCCCHHHHHHHHHh---CCCCeE
Q 013115 214 PAGNWLV----GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDN---RQADAI 258 (449)
Q Consensus 214 ~~g~~~v----gG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~---~gw~~V 258 (449)
--+|-- |.++-+ .|+ .|-.|.++.|.+ .|++.+
T Consensus 166 -p~~w~~~~~~g~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~ 205 (215)
T PRK13599 166 -PEKWPNNYLIKDHVIV-PPS----------TDEASANERKEKIKSKEIEAF 205 (215)
T ss_pred -CCCCCCCCCCCCcEEE-cCC----------CCHHHHHHhccccccCCcccc
Confidence 334533 444443 222 467888888864 466643
No 104
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.27 E-value=1.7e+02 Score=25.21 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=28.8
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEIYK 187 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~evy~ 187 (449)
+-++.++|+. |+.||.|.|....|.+.+.+.+++--.
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~g~~~~~~~~~~~v~ 73 (129)
T cd02782 35 LRIHPDDAAALGLADGDKVRVTSAAGSVEAEVEVTDDMM 73 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCCeEEEEEEECCCcC
Confidence 4567777664 689999999988999988888877543
No 105
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.22 E-value=1.4e+02 Score=27.06 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=28.1
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+.++.++|+ .|+.||.|.+.+..|++.+...+++-
T Consensus 33 v~inp~dA~~lgI~dGd~V~v~~~~G~v~~~a~v~~~ 69 (141)
T cd02776 33 VWMNPKDAAELGIKDNDWVEVFNDNGVVVARAKVSPR 69 (141)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCC
Confidence 567777776 56899999999888998888887763
No 106
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=22.83 E-value=1.2e+02 Score=26.31 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=27.5
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~~--l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+.++.++|+. |+.||.|.+....|.+.+...+++-
T Consensus 36 v~i~p~dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~ 72 (127)
T cd02777 36 VWINPLDAAARGIKDGDIVRVFNDRGAVLAGARVTDR 72 (127)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCC
Confidence 5566666665 6789999999888998888887764
No 107
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=22.28 E-value=45 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=16.9
Q ss_pred HHhhcCCCCeEEEeCCCCCEEEE
Q 013115 157 TKERIGSTTNVALLGPTGDLIGI 179 (449)
Q Consensus 157 ~a~~l~~G~~vaL~d~eG~~vAi 179 (449)
.+.-|++|..+.+.-.+|+++++
T Consensus 33 ~~~~l~eg~~v~v~~~~g~~i~~ 55 (55)
T cd04463 33 SFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred HHhhCCCCCEEEEEEECCEEEeC
Confidence 45568899998876568887763
No 108
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=21 Score=35.60 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=42.3
Q ss_pred EecChHHHhhcCCCCeEEEeCCCCCEEEEEEecccccc------CHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeE
Q 013115 151 LAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKH------NKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (449)
Q Consensus 151 L~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~------Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 224 (449)
+.|..+.+..++.|..+.|.+ +|.++++|+. -.++..+++|||+|+. -|.. ++.-.|++
T Consensus 21 vlvdP~~a~~~R~g~~vdlee-------vLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~~--eI~~------eIl~kGei 85 (234)
T COG1500 21 VLVDPNKALEYREGKEVDLEE-------VLATETVFKDASKGEKASEEDLKKAFGTTDPD--EIAE------EILKKGEI 85 (234)
T ss_pred EEECHhHHHHHHcCCCCCHHH-------HHhHHHHHHhccccccCCHHHHHHHhCCCCHH--HHHH------HHHhcCce
Confidence 456777788899999888864 5778899976 2356789999999932 2322 23445666
Q ss_pred EE
Q 013115 225 EV 226 (449)
Q Consensus 225 ~~ 226 (449)
++
T Consensus 86 Ql 87 (234)
T COG1500 86 QL 87 (234)
T ss_pred ec
Confidence 65
No 109
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.81 E-value=1.3e+02 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=27.8
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 013115 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (449)
Q Consensus 151 L~V~~e~a~--~l~~G~~vaL~d~eG~~vAiL~V~ev 185 (449)
+.++.++|+ .|+.||.|.+.+..|.+.+.+.+++-
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~~ 71 (129)
T cd02793 35 IRINPADAAARGIADGDIVRVFNDRGACLAGAVVTDG 71 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 456776665 57899999999888999888888663
No 110
>PRK08395 fumarate hydratase; Provisional
Probab=20.72 E-value=89 Score=29.62 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=22.0
Q ss_pred eEEEecChHHHhhcCCCCeEEEeCCCCCEE
Q 013115 148 PIVLAIDDETKERIGSTTNVALLGPTGDLI 177 (449)
Q Consensus 148 PItL~V~~e~a~~l~~G~~vaL~d~eG~~v 177 (449)
-+++++++|++++|+.||.|.|. |.++
T Consensus 2 ~l~tPl~~e~i~~L~~GD~V~Ls---G~i~ 28 (162)
T PRK08395 2 KLKTPLSWEDVLKLKAGDVVYLS---GIIY 28 (162)
T ss_pred eeeCCCCHHHHhhCCCCCEEEEE---EEEE
Confidence 46677889999999999999986 5543
Done!