Query 013115
Match_columns 449
No_of_seqs 167 out of 598
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x6v_B Bifunctional 3'-phospho 100.0 1E-122 4E-127 998.2 35.5 370 65-438 224-624 (630)
2 1r6x_A ATP:sulfate adenylyltra 100.0 3E-121 1E-125 939.5 29.0 358 67-439 2-394 (395)
3 1g8f_A Sulfate adenylyltransfe 100.0 1E-115 4E-120 924.9 29.9 357 65-436 1-392 (511)
4 1jhd_A Sulfate adenylyltransfe 100.0 3E-109 1E-113 851.9 25.3 353 65-436 1-395 (396)
5 1m8p_A Sulfate adenylyltransfe 100.0 4E-109 1E-113 884.6 27.1 357 65-435 2-392 (573)
6 2gks_A Bifunctional SAT/APS ki 100.0 4E-106 1E-110 857.6 29.3 335 88-435 2-368 (546)
7 3cr8_A Sulfate adenylyltranfer 100.0 2E-106 8E-111 860.6 26.7 332 63-434 3-364 (552)
8 1v47_A ATP sulfurylase; produc 100.0 8E-102 3E-106 786.0 27.0 314 91-431 3-348 (349)
9 1od6_A PPAT, phosphopantethein 98.1 1E-05 3.4E-10 71.6 8.3 147 263-433 8-159 (160)
10 1ej2_A Nicotinamide mononucleo 97.7 0.00055 1.9E-08 62.2 13.7 151 258-431 6-160 (181)
11 1qjc_A Phosphopantetheine aden 97.7 0.0014 4.8E-08 57.5 15.7 145 261-432 7-157 (158)
12 1k4m_A NAMN adenylyltransferas 97.5 0.00075 2.5E-08 62.8 12.1 157 259-430 7-208 (213)
13 1kam_A Deamido-NAD(+), nicotin 97.5 0.0029 1E-07 57.9 15.2 152 258-430 10-188 (194)
14 2qtr_A Nicotinate (nicotinamid 97.3 0.00056 1.9E-08 61.9 7.8 148 259-430 6-183 (189)
15 1o6b_A Phosphopantetheine aden 97.3 0.0047 1.6E-07 55.1 13.5 141 258-431 5-157 (169)
16 1f9a_A Hypothetical protein MJ 97.1 0.0052 1.8E-07 55.1 11.8 136 263-431 8-154 (168)
17 3f3m_A Phosphopantetheine aden 96.8 0.016 5.4E-07 52.8 12.5 139 262-433 10-160 (168)
18 3k9w_A Phosphopantetheine aden 96.7 0.011 3.9E-07 54.8 11.3 148 256-434 23-180 (187)
19 1vlh_A Phosphopantetheine aden 96.5 0.046 1.6E-06 49.4 13.3 142 263-434 20-170 (173)
20 4f3r_A Phosphopantetheine aden 96.3 0.0057 1.9E-07 55.4 6.0 143 258-432 8-160 (162)
21 3nv7_A Phosphopantetheine aden 96.2 0.011 3.6E-07 53.5 7.5 137 262-430 9-156 (157)
22 3nd5_A Phosphopantetheine aden 96.0 0.032 1.1E-06 50.9 9.9 138 263-431 10-158 (171)
23 2qjt_B Nicotinamide-nucleotide 96.0 0.072 2.5E-06 52.1 13.0 149 263-434 15-179 (352)
24 2qjo_A Bifunctional NMN adenyl 96.0 0.0069 2.4E-07 58.9 5.7 150 259-431 11-171 (341)
25 3h05_A Uncharacterized protein 96.0 0.004 1.4E-07 57.1 3.7 145 263-430 10-166 (177)
26 2x0k_A Riboflavin biosynthesis 95.8 0.013 4.3E-07 59.1 6.9 143 257-413 17-175 (338)
27 2h29_A Probable nicotinate-nuc 95.8 0.051 1.7E-06 49.3 10.1 148 262-430 9-183 (189)
28 1yum_A 'probable nicotinate-nu 95.4 0.45 1.5E-05 45.3 15.7 155 262-430 30-226 (242)
29 3nbk_A Phosphopantetheine aden 95.0 0.2 6.9E-06 46.1 11.3 144 257-432 23-176 (177)
30 2b7l_A Glycerol-3-phosphate cy 94.9 0.15 5.3E-06 43.3 9.7 123 258-414 4-131 (132)
31 1kqn_A Nmnat, nicotinamide mon 93.9 0.21 7.3E-06 48.7 9.4 83 257-345 10-94 (279)
32 1nup_A FKSG76; NAD biosynthesi 93.7 0.25 8.5E-06 47.2 9.2 64 258-321 9-74 (252)
33 3op1_A Macrolide-efflux protei 93.4 0.16 5.6E-06 50.6 7.6 145 256-413 21-178 (308)
34 3gmi_A UPF0348 protein MJ0951; 92.2 0.43 1.5E-05 48.5 8.9 162 256-433 53-261 (357)
35 1mrz_A Riboflavin kinase/FMN a 86.9 2.1 7.2E-05 42.1 8.8 133 259-413 3-148 (293)
36 1coz_A Protein (glycerol-3-pho 86.7 4.5 0.00015 33.8 9.7 88 258-368 4-96 (129)
37 1lw7_A Transcriptional regulat 85.8 2.6 8.9E-05 41.6 9.0 51 263-320 10-70 (365)
38 3glv_A Lipopolysaccharide core 85.1 1.2 4E-05 38.7 5.4 88 256-367 3-95 (143)
39 3do8_A Phosphopantetheine aden 80.1 1.5 5E-05 38.8 4.1 53 263-321 8-65 (148)
40 3n8h_A Pantothenate synthetase 66.8 3.9 0.00013 40.0 3.7 55 240-297 7-62 (264)
41 2ejc_A Pantoate--beta-alanine 66.6 3.9 0.00013 40.2 3.6 54 241-298 5-61 (280)
42 3elb_A Ethanolamine-phosphate 64.0 5.5 0.00019 40.1 4.3 90 256-369 8-103 (341)
43 3uk2_A Pantothenate synthetase 63.6 3.1 0.0001 41.1 2.3 65 240-310 8-72 (283)
44 3inn_A Pantothenate synthetase 60.3 5.4 0.00019 39.9 3.4 69 239-311 24-94 (314)
45 3q12_A Pantoate--beta-alanine 54.3 7.2 0.00025 38.5 3.1 40 240-279 7-48 (287)
46 3v67_A Sensor protein CPXA; PA 54.0 7.1 0.00024 34.4 2.7 56 163-227 54-111 (138)
47 3ag6_A Pantothenate synthetase 53.2 7.3 0.00025 38.3 2.9 63 240-307 5-70 (283)
48 1v8f_A Pantoate-beta-alanine l 50.3 8.7 0.0003 37.6 3.0 61 240-307 4-64 (276)
49 3mxt_A Pantothenate synthetase 39.8 9.8 0.00034 37.6 1.5 67 240-311 7-75 (285)
50 3elb_A Ethanolamine-phosphate 32.3 49 0.0017 33.1 5.2 94 254-370 197-299 (341)
51 1xvq_A Thiol peroxidase; thior 30.4 89 0.0031 26.7 6.0 58 146-203 100-169 (175)
52 3hl4_A Choline-phosphate cytid 28.1 38 0.0013 32.4 3.4 108 239-367 60-172 (236)
53 3gl3_A Putative thiol:disulfid 24.9 1.2E+02 0.0042 24.4 5.7 62 146-207 86-150 (152)
54 2ts1_A Tyrosyl-tRNA synthetase 22.7 1.7E+02 0.0058 30.0 7.3 44 242-286 18-62 (419)
55 1jil_A Tyrrs, tyrosyl-tRNA syn 22.5 1.6E+02 0.0054 30.1 7.0 45 241-286 19-64 (420)
56 3ctu_A CBS domain protein; str 21.1 59 0.002 26.9 3.0 31 158-188 109-139 (156)
57 2yxn_A Tyrosyl-tRNA synthetase 21.1 3.2E+02 0.011 26.7 8.7 44 242-286 21-65 (322)
58 3k6e_A CBS domain protein; str 20.8 52 0.0018 28.0 2.6 30 158-187 109-138 (156)
No 1
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=100.00 E-value=1.2e-122 Score=998.18 Aligned_cols=370 Identities=58% Similarity=1.048 Sum_probs=354.1
Q ss_pred CcCCCCcc--ccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCe
Q 013115 65 LIEPDGGV--LVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSI 142 (449)
Q Consensus 65 ~i~PhGg~--lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~ 142 (449)
.+.||||+ |++|+|+++++++++++|++||+|.||++++||||||++||||||+||||++||+||+ ++|||+||..
T Consensus 224 ~~ip~G~~~~l~~l~v~~~~~~~~~~~a~~l~~i~l~~~~~~dlell~~G~fsPL~GfM~~~dy~~v~--~~~~l~~g~~ 301 (630)
T 1x6v_B 224 DIVPVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCL--HFDCLLDGGV 301 (630)
T ss_dssp TSSCCCCCCSCCCCBCCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHHTTTTTCCSSCCHHHHHHHH--HHSEECTTSC
T ss_pred CcccccCcccceecccChHHHHHHHHhhccCCEEEECHHHHHHHHHHhcCCccCchhhCCHHHHHHHH--HhCEeCCCCe
Confidence 36799965 9999999999999999999999999999999999999999999999999999999999 7999999753
Q ss_pred eccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEee
Q 013115 143 VNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGG 222 (449)
Q Consensus 143 ~~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG 222 (449)
++|||||||+|+++++++|++|++|+| +++|+++|+|+|+|+|++||++||++||||+|++||||++++. +|+|+|||
T Consensus 302 ~~~~iPi~L~v~~~~~~~l~~g~~v~L-~~~g~~~a~l~v~e~~~~dk~~~a~~v~gt~d~~HPgv~~~~~-~g~~~vgG 379 (630)
T 1x6v_B 302 INLSVPIVLTATHEDKERLDGCTAFAL-MYEGRRVAILRNPEFFEHRKEERCARQWGTTCKNHPYIKMVME-QGDWLIGG 379 (630)
T ss_dssp EECCSCCCEEECHHHHHHHTTCSEEEE-EETTEEEEEEEEEEEEECCHHHHHHHHHSCCCTTSHHHHHHHH-SCSEEEEE
T ss_pred eeeeeEEEEeCCHHHHhhCCCCCEEEE-ccCCeEEEEEEeeEEEecCHHHHHHHHhCCCCCCCcchHHHHh-CCCEEEEe
Confidence 349999999999999999999999999 6899999999999999999999999999999999999999875 69999999
Q ss_pred eEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC
Q 013115 223 DLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302 (449)
Q Consensus 223 ~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK 302 (449)
+|++++++.|+|+|++||+||+|+|+.|+++||++|||||||||+|||||+||++|++.+.+.||++++|||||++|+||
T Consensus 380 ~i~~l~~~~~~~~~~~~~~tP~e~r~~f~~~gw~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl~G~tk 459 (630)
T 1x6v_B 380 DLQVLDRVYWNDGLDQYRLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTK 459 (630)
T ss_dssp EEEECSCCCCCSSCGGGCCCHHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCCC
T ss_pred EEEEEecCcccccchhhcCCHHHHHHHHHHcCCCeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeCcCCCC
Confidence 99999998888889999999999999999999999999999999999999999999987778889999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCC
Q 013115 303 ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDP 382 (449)
Q Consensus 303 ~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~ 382 (449)
+||||+++||+||++++++||||+++++|++||++|||||||||+||||+|||||||||||||||||||+++.+.+|||+
T Consensus 460 ~~di~~~~r~~~~~~~~~~~y~p~~~~~l~~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhAG~g~~~~~~~~Y~~ 539 (630)
T 1x6v_B 460 DDDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPETGKDLYEP 539 (630)
T ss_dssp TTSCCHHHHHHHHHHHHHTTSSCGGGEEECCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTTCCBCTTTCSBSSCT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcceEEeeccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCCccccCCc
Confidence 99999999999999999768999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCccccccchHH-----------------------------HHHHHhCCCCCCCCCCchhHHHHHHHHHH
Q 013115 383 DHGKKVLSMALGLEKLNILPFR-----------------------------MRTFARSGENPPDGFMCPGGWKVLVQYYE 433 (449)
Q Consensus 383 ~~aq~i~~~~~g~~~l~i~p~~-----------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y~ 433 (449)
|+||+||+++|++.+|+|++|. ||+||++|+.||+||||||||++|++||+
T Consensus 540 ~~aq~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~p~~~~~~~~isgt~~R~~l~~G~~pP~~f~rpev~~~l~~~~~ 619 (630)
T 1x6v_B 540 SHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYK 619 (630)
T ss_dssp THHHHHHHHCTTCTTCEEEECCCEEEETTTTEEEECCSTTGGGEECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHHHHH
T ss_pred chHHHHHhcCcccCCceEEEcceeEEEcccCceeccCCCCCceeeecCHHHHHHHHHCCCCCCcccCcHHHHHHHHHhcc
Confidence 9999999988887788888887 99999999999999999999999999999
Q ss_pred hhhhh
Q 013115 434 SLQAE 438 (449)
Q Consensus 434 ~~~~~ 438 (449)
++++.
T Consensus 620 ~~~~~ 624 (630)
T 1x6v_B 620 SLEKA 624 (630)
T ss_dssp HHCC-
T ss_pred Ccccc
Confidence 98764
No 2
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=3.2e-121 Score=939.52 Aligned_cols=358 Identities=31% Similarity=0.503 Sum_probs=329.5
Q ss_pred CCCCccccccccCchh-hchHHHHhcC--CCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCee
Q 013115 67 EPDGGVLVDLVVPESE-RGLRTTEAES--MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (449)
Q Consensus 67 ~PhGg~lv~l~v~~~~-~~~l~~ea~~--Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~ 143 (449)
.||||+|++|+|++++ +++++++|++ ||+|+||++++||||||++||||||+||||++||+||+ ++|||+||++
T Consensus 2 ~phgg~l~~l~v~~~~~~~~~~~~a~~~~lp~i~l~~~~l~dlell~~G~fsPL~GFM~~~dy~~V~--~~~rL~dG~~- 78 (395)
T 1r6x_A 2 APHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVV--TDSRLADGTL- 78 (395)
T ss_dssp CCTTSSCCBHHHHTGGGHHHHHHHHTCTTSEEEECCHHHHHHHHHHHBTTTTTCCEECCHHHHHHHH--HHSBCTTSCB-
T ss_pred cCCCccccccccCchHHhHHHHHHhhcCCCCeEEcCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC-
Confidence 5999999999999775 4559999999 99999999999999999999999999999999999999 7999999987
Q ss_pred ccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeee
Q 013115 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (449)
Q Consensus 144 ~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (449)
|||||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++||++||++||| +|++||||++++...|+|+|||+
T Consensus 79 -wpiPI~L~v~~e~~~~l~~g~~vaL~~~~g~~~ail~v~e~y~~dk~~~a~~vfg-~d~~HPgV~~~~~~~g~~~vgG~ 156 (395)
T 1r6x_A 79 -WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPNKTIEAEKVFR-GDPEHPAISYLFNVAGDYYVGGS 156 (395)
T ss_dssp -CCSCCCEEECHHHHHTCCTTCEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHC-SCTTSHHHHHHHHTSCSEEEEEE
T ss_pred -cceEEEEeCCHHHHhhcCCCCEEEEEcCCCceEEEEEeeeeeccChHHHHHHHhC-CCcCCccHHHHHhhcCCEEEEEE
Confidence 8999999999999999999999999989999999999999999999999999999 99999999999865599999999
Q ss_pred EEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchh-HHHHHHHHHHHHHcCCCCCeEEEccccCCCC
Q 013115 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGH-ALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302 (449)
Q Consensus 224 v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaH-e~L~r~a~~~ale~g~~~~~lLLhPlvG~tK 302 (449)
|++++++.|+ +|++||+||+|+|+.|+++||++|||||||||+|||| |+++|. |+|. +++|||||++|+||
T Consensus 157 v~~l~~~~~~-df~~~r~tP~e~R~~f~~~gw~~VvafqtrNP~HraH~e~~~r~----a~e~---~~~lllhPlvG~tK 228 (395)
T 1r6x_A 157 LEAIQLPQHY-DYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRA----AREA---NAKVLIHPVVGLTK 228 (395)
T ss_dssp EEESCCCCCC-SSTTCSCCHHHHHHHHHHTTCCCEEEECCSSCCCHHHHHHHHHH----HHHT---TCEEEECCBCSBCC
T ss_pred EEEEecCCcC-CchhhcCCHHHHHHHHHhcCCCcEEEeccCCCcchhhHHHHHHH----HHHc---CCcEEEEECCCCCC
Confidence 9999988886 6999999999999999999999999999999999999 666654 4465 48999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCC
Q 013115 303 ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDP 382 (449)
Q Consensus 303 ~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~ 382 (449)
+||+|+++||+||+++++ +| |+++++|+++|++|||||||||+||||+|||||||||||||||||||+++++.+||++
T Consensus 229 ~~Dip~~vR~~~~~~~l~-~y-p~~~v~l~~~p~~mryAGPrEai~HAiiRkN~GcthfIVGRDhAG~g~~~~~~d~Y~~ 306 (395)
T 1r6x_A 229 PGDIDHHTRVRVYQEIIK-RY-PNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGP 306 (395)
T ss_dssp TTCCCHHHHHHHHHHHGG-GS-STTCEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCT
T ss_pred CCCCCHHHHHHHHHHHHH-hC-CCccEEEEecchhhhhcCcHHHHHHHHHHHHcCCceEEECCCCCCCCCCCcccccCCc
Confidence 999999999999999996 45 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCccccccchHH-------------------------------HHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 383 DHGKKVLSMALGLEKLNILPFR-------------------------------MRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 383 ~~aq~i~~~~~g~~~l~i~p~~-------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
|+||+||++++++.+|+|++|. ||+||++|+.||+||||||||+||+++
T Consensus 307 ~~aq~i~~~~~~el~I~~v~f~~~~Y~~~~~~~~~~~~~p~~~~~~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~~ 386 (395)
T 1r6x_A 307 YDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRES 386 (395)
T ss_dssp THHHHHHHHHHHHHTCEEEECCCEEEEGGGTEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC
T ss_pred chHHHHHHhchhccCceEEEecceEEecccCeEEEcccCCCCccceEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHHh
Confidence 9999999988654556655555 999999999999999999999999999
Q ss_pred HHhhhhhc
Q 013115 432 YESLQAEE 439 (449)
Q Consensus 432 y~~~~~~~ 439 (449)
|++..+++
T Consensus 387 ~~~r~~qg 394 (395)
T 1r6x_A 387 NPPRPKGS 394 (395)
T ss_dssp --------
T ss_pred cCChhhcC
Confidence 99887654
No 3
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=100.00 E-value=1.2e-115 Score=924.85 Aligned_cols=357 Identities=31% Similarity=0.509 Sum_probs=332.7
Q ss_pred CcCCCCccccccccCchhh-chHHHHhcC--CCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCC
Q 013115 65 LIEPDGGVLVDLVVPESER-GLRTTEAES--MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGS 141 (449)
Q Consensus 65 ~i~PhGg~lv~l~v~~~~~-~~l~~ea~~--Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~ 141 (449)
|+.||||+|++|+++++++ ++++++|++ ||+|+||++++||||||++||||||+||||++||+||+ ++|||+||+
T Consensus 1 ~~~phgg~l~~~~~~~~~~~~~~~~~a~~~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~--~~~rl~~G~ 78 (511)
T 1g8f_A 1 MPAPHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVV--TDSRLADGT 78 (511)
T ss_dssp -CCCTTSSCCCHHHHTGGGHHHHHHHHTCTTSEEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHH--HHSBCTTCC
T ss_pred CCCCCCCeeeccccCchhhhHHHHHHhhcCCCCeEEcCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCC
Confidence 4689999999999887754 559999999 99999999999999999999999999999999999999 799999998
Q ss_pred eeccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEe
Q 013115 142 IVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVG 221 (449)
Q Consensus 142 ~~~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vg 221 (449)
+ |||||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++||++||++||| +|++||||++++...|+|+||
T Consensus 79 ~--w~iPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~v~g-~d~~HPgv~~~~~~~g~~~v~ 155 (511)
T 1g8f_A 79 L--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPNKTIEAERVFR-GDPEHPAISYLFNVAGDYYVG 155 (511)
T ss_dssp B--CCSCCCEEECHHHHTTCCTTCEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHC-SCTTSHHHHHHHHTSCSEEEE
T ss_pred C--cceeEEEeCCHHHHhhccCCCEEEEECCCCceEEEEEeeeeeccChHHHHHHHhC-CCcCCccHHHHHhhCCCEEEE
Confidence 7 8999999999999999999999999999999999999999999999999999999 999999999998655999999
Q ss_pred eeEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchh-HHHHHHHHHHHHHcCCCCCeEEEccccCC
Q 013115 222 GDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGH-ALLMNDTRRRLLEMGYKNPILLLHPLGGF 300 (449)
Q Consensus 222 G~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaH-e~L~r~a~~~ale~g~~~~~lLLhPlvG~ 300 (449)
|+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||| |++++.+ +|. +++|||||++|+
T Consensus 156 G~v~~l~~~~~~-~~~~~~~tP~e~r~~f~~~gw~~v~afqtrnP~HraH~e~~~~~a----~e~---~~~lll~pl~g~ 227 (511)
T 1g8f_A 156 GSLEAIQLPQHY-DYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAA----REA---NAKVLIHPVVGL 227 (511)
T ss_dssp EEEEESCCCCCC-SCTTTCCCHHHHHHHHHHTTCCCEEEEEESSCCCHHHHHHHHHHH----HHH---TCEEEEEEBCSB
T ss_pred EEEEEEecCCcC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCchHHHHHHHHHH----HHc---CCcEEEEECCCC
Confidence 999999988886 6999999999999999999999999999999999999 6776543 455 489999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCC
Q 013115 301 TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLY 380 (449)
Q Consensus 301 tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y 380 (449)
||+||+|+++||+||+++++ +| |+++++|+++|++|||||||||+||||+|||||||||||||||||||+++++.+||
T Consensus 228 ~k~~di~~~~r~~~~~~~~~-~y-p~~~~~l~~~p~~m~yaGprea~~hai~r~n~G~th~IvGrdhAg~g~~~~~~~~Y 305 (511)
T 1g8f_A 228 TKPGDIDHHTRVRVYQEIIK-RY-PNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFY 305 (511)
T ss_dssp CSTTCCCHHHHHHHHHHHGG-GS-CTTSEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEECCTTTTCCCBCTTSCBSS
T ss_pred CCCCCCCHHHHHHHHHHHHH-hC-CcccEEEEecchhhhccCcHHHHHHHHHHHhCCCceEEeCCCCCCCCCCCcccccC
Confidence 99999999999999999996 45 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhccCccccccchHH-------------------------------HHHHHhCCCCCCCCCCchhHHHHHH
Q 013115 381 DPDHGKKVLSMALGLEKLNILPFR-------------------------------MRTFARSGENPPDGFMCPGGWKVLV 429 (449)
Q Consensus 381 d~~~aq~i~~~~~g~~~l~i~p~~-------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~ 429 (449)
++|+||+||++++++.+|++++|. ||+||++|+.||+|||+|||+++|+
T Consensus 306 ~~~~aq~i~~~~~~~l~i~pv~fd~~~y~~~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr 385 (511)
T 1g8f_A 306 GPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILR 385 (511)
T ss_dssp CTTHHHHHHHHTHHHHCSEEECCCCEEEEGGGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHH
T ss_pred CcchHHHHHHhCccccCceEEeecceeEecccCeEEEcccCCCCcccccccCHHHHHHHHhCCCCCCccccChhhHHHHH
Confidence 999999999998644445544444 9999999999999999999999999
Q ss_pred HHHHhhh
Q 013115 430 QYYESLQ 436 (449)
Q Consensus 430 ~~y~~~~ 436 (449)
++|++..
T Consensus 386 ~~~~~~~ 392 (511)
T 1g8f_A 386 ESNPPRP 392 (511)
T ss_dssp HHSCCGG
T ss_pred Hhccccc
Confidence 9997654
No 4
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=3.1e-109 Score=851.95 Aligned_cols=353 Identities=26% Similarity=0.395 Sum_probs=330.8
Q ss_pred CcCCCCcccccccc--CchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCe
Q 013115 65 LIEPDGGVLVDLVV--PESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSI 142 (449)
Q Consensus 65 ~i~PhGg~lv~l~v--~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~ 142 (449)
++.||||+|++|+| +++++++++++|++||+|.||++++||||||++||||||+||||++||+||+ ++|||+||++
T Consensus 1 ~~~phgg~l~~~~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dlell~~G~fsPL~GFM~~~d~~~v~--~~~rl~~G~~ 78 (396)
T 1jhd_A 1 MIKPVGSDELKPLFVYDPEEHHKLSHEAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAA--EKMTLSDGSF 78 (396)
T ss_dssp CCCCTTSSSCCCCBCCSHHHHHHHHHHHTTSCEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHH--HHSBCTTSCB
T ss_pred CCCCCCCeeeccccCCChHHHHHHHHHhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC
Confidence 36899999999999 9999999999999999999999999999999999999999999999999999 7999999988
Q ss_pred eccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHH------HhhCCCCCCCcchhhhcccCC
Q 013115 143 VNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIA------RTWGTTAAGLPYVEEVITPAG 216 (449)
Q Consensus 143 ~~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~------~VfGT~d~~HPgV~~~~~~~g 216 (449)
|||||||+|++ ++++++|++|+|+|++|+++|+|+|+|+|++||++||+ +||||+|++||||++++ +.|
T Consensus 79 --wpiPi~L~v~~--~~~l~~g~~v~L~d~~g~~~a~l~v~e~~~~dk~~~a~~~~~~~~v~gt~d~~HPgv~~~~-~~g 153 (396)
T 1jhd_A 79 --FPVPVLCLLEN--TDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAVMTDKVYRTTDMDHIGVKTFN-SQG 153 (396)
T ss_dssp --CCSCCCCEESC--STTTTTCSEEEEECTTSTTCCEEEEEECCEEEECCHHHHHHHHHHHHSCCCTTSHHHHHHT-TSC
T ss_pred --ccEEEEEecch--hhhCCCCCEEEEECCCCceEEEEEeeeeeccChHHHhhhhcccccEECCCCCCCcchHHHh-hcC
Confidence 89999999997 88899999999999999999999999999999999999 99999999999999987 689
Q ss_pred cEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcc
Q 013115 217 NWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP 296 (449)
Q Consensus 217 ~~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhP 296 (449)
+|+|||+|++++++.|+++|++||+||+|+|+.|+++||++|||||||||+||||++|++.|++.+ + .+++||||
T Consensus 154 ~~~vgG~v~~l~~~~~~~~~~~~~~tP~e~R~~f~~~gw~~VvafqTrNPiHrgH~~l~~~Ale~~---~--~D~vll~P 228 (396)
T 1jhd_A 154 RVAVSGPIQVLNFSYFQADFPDTFRTAVEIRNEIKEHGWSKVVAFQTRNPMHRAHEELCRMAMESL---D--ADGVVVHM 228 (396)
T ss_dssp SEEEEEEEEECCCHHHHHHCTTTBCCHHHHHHHHHHHTCSSEEEEEESSCCCHHHHHHHHHHHHHH---T--CSEEEEEE
T ss_pred CEEEEEEEEEEecccccccchhhcCCHHHHHHHHHhcCCceEEEeccCCCCchHHHHHHHHHHHHc---C--CCeEEEEE
Confidence 999999999999887767899999999999999999999999999999999999999998876532 2 36899999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCC
Q 013115 297 LGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEK 376 (449)
Q Consensus 297 lvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~ 376 (449)
++|++|+||+|+++|++||+++++ +|||+++++++++|++|+||||||++||||+|||||||||||||||||+|
T Consensus 229 ~~g~~K~~di~~~~R~~~~~~~~~-~~~p~~~v~l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~----- 302 (396)
T 1jhd_A 229 LLGKLKKGDIPAPVRDAAIRTMAE-VYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVG----- 302 (396)
T ss_dssp EECCCCTTCCCHHHHHHHHHHHHH-HHSCTTCEEEEEEECCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCT-----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-hcCCCcceEEEechHHhhcCCchHHHHHHHHHHcCCCcEEEECCCCCCcc-----
Confidence 999999999999999999999996 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhhhhc-cCc-c--------------------------------ccccchHHHHHHHhCCCCCCCCCCch
Q 013115 377 RDLYDPDHGKKVLSMA-LGL-E--------------------------------KLNILPFRMRTFARSGENPPDGFMCP 422 (449)
Q Consensus 377 ~~~Yd~~~aq~i~~~~-~g~-~--------------------------------~l~i~p~~vR~~Lr~G~~pP~~F~rP 422 (449)
+||++|++|+||+.+ +++ . .+.|+..+||+||++|+.||+|||+|
T Consensus 303 -~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~~p~~~~~~~~~ISgT~IR~~L~~G~~pP~~f~~p 381 (396)
T 1jhd_A 303 -DYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRP 381 (396)
T ss_dssp -TCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGGCTTCCGGGEECCCHHHHHHHHHTTCCCCTTTCCH
T ss_pred -ccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEccccCcccCCCccccCHHHHHHHHHCCCCCCcccCCH
Confidence 799999999999964 221 1 13344555999999999999999999
Q ss_pred hHHHHHHHHHHhhh
Q 013115 423 GGWKVLVQYYESLQ 436 (449)
Q Consensus 423 eV~~iL~~~y~~~~ 436 (449)
||+++|+++|++++
T Consensus 382 eV~~~I~~~~~~~~ 395 (396)
T 1jhd_A 382 EVAKILMDYYQSIN 395 (396)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999875
No 5
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=100.00 E-value=4.4e-109 Score=884.60 Aligned_cols=357 Identities=27% Similarity=0.445 Sum_probs=334.9
Q ss_pred CcCCCCccccccccCc-hhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCee
Q 013115 65 LIEPDGGVLVDLVVPE-SERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (449)
Q Consensus 65 ~i~PhGg~lv~l~v~~-~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~ 143 (449)
|+.||||+|++|+|++ +++++++++|++||+|+||++++||||||++||||||+|||+++||+||+ ++|||+||++
T Consensus 2 ~~~phgg~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~- 78 (573)
T 1m8p_A 2 ANAPHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVC--EDNRLADGNV- 78 (573)
T ss_dssp CSCCSTTSCCCHHHHTSTTHHHHHHHHTTSCEEEECHHHHHHHHHHHTSTTTTCCEECCHHHHHHHH--HHSBCTTSCB-
T ss_pred CCCCCCCcccccccCchHHHHHHHHHhccCCeEEeCHHHHHHHHHHhcCCcCCCcccCCHHHHHHHH--HhCcCCCCCC-
Confidence 5689999999999998 88999999999999999999999999999999999999999999999999 6999999987
Q ss_pred ccceeEEEecChHHHhhc--CCCCeEEEeC-CCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEE
Q 013115 144 NMSLPIVLAIDDETKERI--GSTTNVALLG-PTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLV 220 (449)
Q Consensus 144 ~wpiPItL~V~~e~a~~l--~~G~~vaL~d-~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~v 220 (449)
|||||||+|+++++++| ++|++|+|+| ++|+++|+|+|+|+|++||++||++||| +|++||||++++...|+|+|
T Consensus 79 -~~~Pi~l~v~~~~~~~l~~~~g~~v~L~~~~~g~~~a~l~v~e~~~~dk~~~~~~v~g-~~~~hP~v~~~~~~~g~~~v 156 (573)
T 1m8p_A 79 -FSMPITLDASQEVIDEKKLQAASRITLRDFRDDRNLAILTIDDIYRPDKTKEAKLVFG-GDPEHPAIVYLNNTVKEFYI 156 (573)
T ss_dssp -CCSCCCCEECHHHHHHTTCCTTCEEEEEETTTTEEEEEEEESCCCCCCHHHHHHHTSC-CCSSTHHHHHHHHTSCSEEC
T ss_pred -cceeEEEeCCHHHHHhhccCCCCEEEEEecCCCeEEEEEEeeeeecCCHHHHHHHHhC-CCCCCccHHHHHhccCCEEE
Confidence 89999999999999999 9999999998 8999999999999999999999999999 99999999999865599999
Q ss_pred eeeEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCC
Q 013115 221 GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF 300 (449)
Q Consensus 221 gG~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~ 300 (449)
||+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||+|++.|+ .+. +++|||||++|+
T Consensus 157 ~G~~~~l~~~~~~-~~~~~~~tp~e~r~~~~~~gw~~v~afqtrnP~Hr~H~~l~~~a~---~~~---~~~llv~pl~g~ 229 (573)
T 1m8p_A 157 GGKIEAVNKLNHY-DYVALRYTPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAA---RSR---QANVLIHPVVGL 229 (573)
T ss_dssp CEEEEECCCCCCC-SCGGGBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHHHHHH---HHT---TCEEEECCBCCC
T ss_pred EEEEEEEecCCcc-CcHhhcCCHHHHHHHHHHcCCCeEEEEeeCCCcchhhHHHHHHHH---Hhc---CCcEEEEeCCCC
Confidence 9999999988886 699999999999999999999999999999999999999987654 354 489999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCC
Q 013115 301 TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLY 380 (449)
Q Consensus 301 tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y 380 (449)
||+||+|+++|++||+++++ + ||+++++++++|++|||||||||+|||++|||||||||||||||||||+++++.+||
T Consensus 230 ~k~~di~~~~R~~~~~~~~~-~-~p~~~v~l~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdhag~g~~~~~~~~Y 307 (573)
T 1m8p_A 230 TKPGDIDHFTRVRAYQALLP-R-YPNGMAVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGSNSKGEDFY 307 (573)
T ss_dssp CCTTCHHHHHHHHHHHHHGG-G-SSTTSEEECBBCCCCCCCHHHHHHHHHHHHHHHTCSEEEECTTTTCCCCCTTCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH-h-CCCCcEEEEecCchhhccCchHHHHHHHHHHHCCCCeEEECCCCCCCCCCCCCcccC
Confidence 99999999999999999996 4 499999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhccCccccccch------------------------------HHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 381 DPDHGKKVLSMALGLEKLNILP------------------------------FRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 381 d~~~aq~i~~~~~g~~~l~i~p------------------------------~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
++|+||+||+++++..++++++ ..||+++++|+.+|.||++|+|++++++
T Consensus 308 ~~~~a~~i~~~~~~~l~i~~v~fd~~~y~~~~g~~i~id~~~~~~~~~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lRe 387 (573)
T 1m8p_A 308 GPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPAGVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387 (573)
T ss_dssp CTTHHHHHHHHHHHHHCCEEEECCCCCBBTTTTBCCCSSSSCTTSCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHT
T ss_pred CcchHHHHHHhhhhhcCceeEeccceEEEcCCCcEEecccCCCCceeecCChHHHHHHHhccCCCCcccccccccHHHHH
Confidence 9999999999886444444444 3399999999999999999999999999
Q ss_pred HHHhh
Q 013115 431 YYESL 435 (449)
Q Consensus 431 ~y~~~ 435 (449)
+|++.
T Consensus 388 ~~~~~ 392 (573)
T 1m8p_A 388 SNPPR 392 (573)
T ss_dssp TSCCT
T ss_pred hcccc
Confidence 98644
No 6
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=100.00 E-value=3.6e-106 Score=857.56 Aligned_cols=335 Identities=30% Similarity=0.507 Sum_probs=313.2
Q ss_pred HHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeE
Q 013115 88 TEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNV 167 (449)
Q Consensus 88 ~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wpiPItL~V~~e~a~~l~~G~~v 167 (449)
++|++||+|+||++++||||||++||||||+||||++||+||+ ++|||+||++ |||||||+|+++++++|++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~--~~~Pi~l~v~~~~~~~l~~g~~v 77 (546)
T 2gks_A 2 EKIKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVV--ESMRLKSGTL--FPIPITLPMEKEIAKDLKEGEWI 77 (546)
T ss_dssp --CCSSEEEECCHHHHHHHHHHHTTTTTTCCSSCCHHHHHHHH--HHSBCTTSCB--CCSCCCEEECHHHHTTCCTTCEE
T ss_pred cccccCCeEecCHHHHHHHHHHhcCCcCCccccCCHHHHHHHH--HhCcCCCCCC--cceeEEEeCCHHHHhhcCCCCEE
Confidence 5789999999999999999999999999999999999999999 6999999987 89999999999999999999999
Q ss_pred EEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHH
Q 013115 168 ALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLR 247 (449)
Q Consensus 168 aL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R 247 (449)
+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++. +|+|+|||+|++|++|.|+ +|++||+||+|+|
T Consensus 78 ~L~~~~g~~~a~l~v~e~~~~dk~~~~~~v~gt~~~~hp~v~~~~~-~g~~~~~G~~~~l~~~~~~-~~~~~~~tp~e~r 155 (546)
T 2gks_A 78 VLRDPKNVPLAIMRVEEVYKWNLEYEAKNVLGTTDPRHPLVAEMHT-WGEYYISGELKVIQLPKYY-DFPEYRKTPKQVR 155 (546)
T ss_dssp EEECTTCCEEEEEECCEEEECCHHHHHHHHHSCCCTTSHHHHHHTT-SCSEEEECCEEESCCCCCC-SCGGGBCCHHHHH
T ss_pred EEECCCCeeEEEEEeceeecCCHHHHHHHHhCCCCCCCcchHHHhh-cCCEEEEEEEEEeecCCcC-CcHhhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999875 6999999999999988886 6999999999999
Q ss_pred HHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCC
Q 013115 248 KEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPE 327 (449)
Q Consensus 248 ~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~ 327 (449)
+.|+++||++|||||||||+|||||+||+.|++ +. +++|||||++|+||+||+|+++|++||+++++ +|||++
T Consensus 156 ~~~~~~gw~~v~afqtrnP~Hr~H~~l~~~a~~---~~---~~~llv~p~~g~~k~~di~~~~R~~~~~~~~~-~~~p~~ 228 (546)
T 2gks_A 156 EEIKSLGLDKIVAFQTRNPMHRVHEELTKRAME---KV---GGGLLLHPVVGLTKPGDVDVYTRMRIYKVLYE-KYYDKK 228 (546)
T ss_dssp HHHHHHTCSCEEEECCSSCCCHHHHHHHHHHHH---HH---TSEEEECCBCSBCCTTSCCHHHHHHHHHHHHH-HHSCTT
T ss_pred HHHHHcCCCcEEEEecCCCCcHHHHHHHHHHHH---hc---CCcEEEEeCcCCCCCCCCCHHHHHHHHHHHHH-hcCCCC
Confidence 999999999999999999999999999876643 44 48999999999999999999999999999996 799999
Q ss_pred ceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCccccccch-----
Q 013115 328 TTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILP----- 402 (449)
Q Consensus 328 ~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p----- 402 (449)
+++++++|++|||||||||+||||||||||||||||||||||||+++++.+||++|+||+||+++++..++++++
T Consensus 229 ~v~~~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdhag~g~~~~~~~~Y~~~~a~~~~~~~~~~lgi~~v~fd~~~ 308 (546)
T 2gks_A 229 KTILAFLPLAMRMAGPREALWHGIIRRNYGATHFIVGRDHASPGKDSKGKPFYDPYEAQELFKKYEDEIGIKMVPFEELV 308 (546)
T ss_dssp TEEECBBCCBCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCCE
T ss_pred cEEEeecCchhhccCchHHHHHHHHHHhCCCCeEEECCCCCCCCCCCCCcccCCcchHHHHHHhcccccCceEEeccceE
Confidence 999999999999999999999999999999999999999999999999999999999999999886433444433
Q ss_pred --------------------------HHHHHH-HhCCCCCCCCCCchhHHHHHHHHHHhh
Q 013115 403 --------------------------FRMRTF-ARSGENPPDGFMCPGGWKVLVQYYESL 435 (449)
Q Consensus 403 --------------------------~~vR~~-Lr~G~~pP~~F~rPeV~~iL~~~y~~~ 435 (449)
..||++ |++|+.||+|||||||+++|+++|++.
T Consensus 309 y~~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~~~p~~~~r~eV~~~lr~~~~~~ 368 (546)
T 2gks_A 309 YVPELDQYVEINEAKKRNLKYINISGTEIRENFLKQGRKLPEWFTRPEVAEILAETYVPK 368 (546)
T ss_dssp EETTTTEEECSCC---------------CTHHHHTTTCCCCTTTSCHHHHHHHHHHSCCG
T ss_pred EEcCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCCCCCccccchhHHHHHHHhhccc
Confidence 239999 999999999999999999999999654
No 7
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=100.00 E-value=2.4e-106 Score=860.65 Aligned_cols=332 Identities=22% Similarity=0.300 Sum_probs=292.5
Q ss_pred cCCcCCCCccccccccCchhhchHHHHhcCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCe
Q 013115 63 SSLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSI 142 (449)
Q Consensus 63 ~~~i~PhGg~lv~l~v~~~~~~~l~~ea~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~ 142 (449)
++|+.||||+|++| |+++++++++++|++||+|+||++++||||||++||||||+|||+++||+||+ ++|||+||++
T Consensus 3 ~~~~~phgg~l~~~-~~~~~~~~~~~~a~~~~~~~l~~~~~~dlell~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~ 79 (552)
T 3cr8_A 3 NQLIEPYGGTLVNL-IDPEKREALKHEALSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVE--SAQQLDDGSF 79 (552)
T ss_dssp CCCCCCGGGSCCCC-BCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHHTTTTTCCEECCHHHHHHHH--HHCBCTTCCB
T ss_pred CCCCCCCCCccccC-CChHHHHHHHHHhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC
Confidence 35789999999999 99999999999999999999999999999999999999999999999999999 7999999987
Q ss_pred eccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEee
Q 013115 143 VNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGG 222 (449)
Q Consensus 143 ~~wpiPItL~V~~e~a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG 222 (449)
|||||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++| |+|+|||
T Consensus 80 --~~~Pi~l~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~d--------------------------g~~~v~G 131 (552)
T 3cr8_A 80 --WPSPITLTSRDRALADRRPGERLALRDGEGYMLAILTLSDVWKDG--------------------------ERWHLAG 131 (552)
T ss_dssp --CCSCCCEEECCGGGTTCCTTCEEEEECTTSCEEEEEEEEEEEEET--------------------------TEEEEEE
T ss_pred --cceEEEEeCCHhHhhccCCCCEEEEECCCCcEEEEEEEEEEEeeC--------------------------CCEEEEE
Confidence 899999999999999999999999999999999999999999997 8999999
Q ss_pred eEEEecCCCCCCCcCcCCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCC
Q 013115 223 DLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK 302 (449)
Q Consensus 223 ~v~~l~~~~~~~~f~~~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK 302 (449)
+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||++++.| ++|.+ ++|||||++|+||
T Consensus 132 ~v~~~~~~~~~-~~~~~~~tp~e~r~~~~~~gw~~v~afqtrnp~Hrah~~~~~~~---~~~~~---~~lll~pl~g~~k 204 (552)
T 3cr8_A 132 EVEGAALPPHP-DFVSLRATPAELRALFVRRGWRRIIAWQARQPMHRAQYEFCLKS---AIENE---ANLLLHPQVGGDI 204 (552)
T ss_dssp EEEESCCCCCC-TTTTTBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHHHHH---HHHTT---CEEEECCBCCCCT
T ss_pred EEEEEecCCcC-CchhhcCCHHHHHHHHHhcCCCceEEEecCCCCchHHHHHHHHH---HHhcC---CeEEEEeccCCCC
Confidence 99999988776 69999999999999999999999999999999999999998765 34664 8999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCC
Q 013115 303 ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDP 382 (449)
Q Consensus 303 ~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~ 382 (449)
+||||+++||+||+++++ +| |+++++|++||++|||||||||+||||+|||||||||||||||||||+++++.+||++
T Consensus 205 ~~d~~~~~r~~~~~~~~~-~~-p~~~~~l~~~p~~m~~agprea~~ha~~r~n~G~th~ivGrdhag~g~~~~~~~~Y~~ 282 (552)
T 3cr8_A 205 TEAPAYFGLVRSFLAIRD-RF-PAATTQLSLLPAPPPEASGRALLLRAIVARNFGCSLLIAGGEHQPDGGDCRRGEDLTQ 282 (552)
T ss_dssp TTCTTHHHHHHHHHHHGG-GS-CGGGEEECBBCSCCCCSCSHHHHHHHHHHHHHTCSEEEC-------------------
T ss_pred CCCCCHHHHHHHHHHHHH-hC-CCccEEEeecchhhcccCcHHHHHHHHHHHhCCCCeeeeCCCCCCCCCCCCccccCCc
Confidence 999999999999999996 45 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCccccccchHH------------------------------HHHHHhCCCCCCCCCCchhHHHHHHHHH
Q 013115 383 DHGKKVLSMALGLEKLNILPFR------------------------------MRTFARSGENPPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 383 ~~aq~i~~~~~g~~~l~i~p~~------------------------------vR~~Lr~G~~pP~~F~rPeV~~iL~~~y 432 (449)
|+||+||++++++.+|++++|. ||++|++|+.+|.||++|+|++++++++
T Consensus 283 ~~a~~i~~~~~~~l~i~pv~f~~~~y~~~~g~~~~~d~~~~~~~~~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~ 362 (552)
T 3cr8_A 283 NRVDPSVAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQGARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQT 362 (552)
T ss_dssp ---CCSSHHHHHHHTCEEECCCCEEEEGGGTEEEEGGGSCTTCCEECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHS
T ss_pred chHHHHHHhhhhhcCCeeeeccceEEecCCCeEEecccCCCCcccccCCHHHHHHHHhcCCCCCccccccchhhhhhhhc
Confidence 9999999998765566666655 9999999999999999999999999988
Q ss_pred Hh
Q 013115 433 ES 434 (449)
Q Consensus 433 ~~ 434 (449)
+.
T Consensus 363 ~~ 364 (552)
T 3cr8_A 363 PP 364 (552)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 8
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=7.7e-102 Score=786.05 Aligned_cols=314 Identities=29% Similarity=0.478 Sum_probs=294.3
Q ss_pred cCCCceeeCchhhHHHHHHHhcccCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEe
Q 013115 91 ESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALL 170 (449)
Q Consensus 91 ~~Lpsi~l~~~dl~dLelL~~G~fSPL~GFM~~~dy~sVl~~~~mrL~dG~~~~wpiPItL~V~~e~a~~l~~G~~vaL~ 170 (449)
++||+|+||++++||||||++||||||+||||++||+||+ ++|||+||++ |||||||+|+++ +++++|++|+|
T Consensus 3 ~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~--~~~rl~~G~~--wpiPi~L~v~~~--~~l~~g~~v~L- 75 (349)
T 1v47_A 3 ETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVA--HEMRLPTGEV--WTIPILLQFREK--PRVGPGNTVAL- 75 (349)
T ss_dssp -CCCEEECCHHHHHHHHHHHTTTTTTCCSBCCHHHHHHHH--HHSBCTTSCB--CCSCCCEEESSC--CSCCTTCEEEE-
T ss_pred ccCceeecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cCeEEEecCChh--hcCCCCCEEEE-
Confidence 5799999999999999999999999999999999999999 6999999988 899999999988 78999999999
Q ss_pred CCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEeeeEEEecCCCCCCCcCcCCCCHHHHHHHH
Q 013115 171 GPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEF 250 (449)
Q Consensus 171 d~eG~~vAiL~V~evy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~E~R~~f 250 (449)
|++|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+|++++ + ++|++||+||+|+|+.|
T Consensus 76 ~~~g~~~a~l~v~e~~~~dk~~~~~~v~gt~d~~HPgv~~~~-~~g~~~vgG~v~~l~---~-~~f~~~~~tP~e~r~~f 150 (349)
T 1v47_A 76 LHGGERVALLHVAEAYELDLEALARAVFGTDSETHPGVARLY-GKGPYALAGRVEVLK---P-RPRTPLEKTPEEVRAFF 150 (349)
T ss_dssp EETTEEEEEEECCEEEECCHHHHHHHHHSCCCTTSHHHHHHH-HTCSEEEEBCEEESS---C-CCCCTTCCCHHHHHHHH
T ss_pred ccCCeeEEEEEeeeeeccCHHHHHHHHhCCCCcCCcchHHHh-hcCCEEEEEEEEEEE---c-CCchhhcCCHHHHHHHH
Confidence 799999999999999999999999999999999999999987 589999999999998 3 48999999999999999
Q ss_pred HhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 251 DNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 251 ~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
+++||++|||||||||+||||++|++.|+ +. .+++||||++|++|+||+|+++|++||+++++ +|||+++++
T Consensus 151 ~~~gw~~VvafqTrNPiHrgH~~l~~~al----e~---~d~vll~P~~g~~K~~d~~~~~R~~~~~~~i~-~~~p~~~~~ 222 (349)
T 1v47_A 151 RQRGWRKVVAFQTRNAPHRAHEYLIRLGL----EL---ADGVLVHPILGAKKPDDFPTEVIVEAYQALIR-DFLPQERVA 222 (349)
T ss_dssp HHTTCCSEEEEEESSCCCHHHHHHHHHHH----HH---SSEEEEEEBCSCCCTTSCCHHHHHHHHHHHHH-HHSCGGGEE
T ss_pred HhcCCCeEEEeecCCCCchHHHHHHHHHH----Hh---CCcEEEEECCCCCCCCCCCHHHHHHHHHHHHh-hcCCCcceE
Confidence 99999999999999999999999997664 33 38999999999999999999999999999997 789999999
Q ss_pred EEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCccc-------------
Q 013115 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEK------------- 397 (449)
Q Consensus 331 L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~~------------- 397 (449)
++++|++||||||||++||||+|||||||||||||||||+| +||++++||+||++++ +.+
T Consensus 223 l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~------~~y~~~~aq~i~~~~~-~l~i~~v~~~~~~Y~~ 295 (349)
T 1v47_A 223 FFGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVG------DFYDPYAAHRIFDRLP-PLGIEIVKVGAVFHCP 295 (349)
T ss_dssp ECCBCSCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCST------TCSCTTHHHHGGGGSC-CCSSEEEECCCEEEET
T ss_pred EEechHHhhcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcc------cccCcccHHHHHHhhh-hcCceEEeccccEEcc
Confidence 99999999999999999999999999999999999999999 7999999999999864 222
Q ss_pred -------------------cccchHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 398 -------------------LNILPFRMRTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 398 -------------------l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
+.|+..++|+||++|+.||+|||+|||+++|++|
T Consensus 296 ~~~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~~pp~~f~~peV~~~I~~~ 348 (349)
T 1v47_A 296 LCGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPILRRG 348 (349)
T ss_dssp TTTEEEETTTSCGGGGGGCEECCHHHHHHHHHTTCCCCTTTSCGGGHHHHHTT
T ss_pred cCCceEEccccCccCCCcccccCHHHHHHHHHCcCCCchhcCCHHHHHHHHhh
Confidence 3444455999999999999999999999999975
No 9
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=98.06 E-value=1e-05 Score=71.63 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=84.9
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC--CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA--DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~--gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mry 340 (449)
|.||+|+||..|++.|.+ .. +-+.+-|.....|+ ..++.+.|++-.+..+. + +| .+.+.-+.
T Consensus 8 sFdp~H~GH~~l~~~a~~----~~---d~v~v~~~~~p~k~~~~~~~~~~R~~ml~~a~~-~-~~--~v~v~~~e----- 71 (160)
T 1od6_A 8 SFDPLTNGHLDVIQRASR----LF---EKVTVAVLENPSKRGQYLFSAEERLAIIREATA-H-LA--NVEAATFS----- 71 (160)
T ss_dssp CCTTCCHHHHHHHHHHHH----HS---SEEEEEEECC-----CCSSCHHHHHHHHHHHTT-T-CT--TEEEEEEC-----
T ss_pred eeCCCCHHHHHHHHHHHH----HC---CEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHhc-C-CC--CEEEEecC-----
Confidence 899999999999876644 32 33444444444454 57899999999987764 2 22 33333332
Q ss_pred CCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCc---cchhhhhhccCccccccchHHHHHHHhCCCCCCC
Q 013115 341 AGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPD---HGKKVLSMALGLEKLNILPFRMRTFARSGENPPD 417 (449)
Q Consensus 341 AGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~---~aq~i~~~~~g~~~l~i~p~~vR~~Lr~G~~pP~ 417 (449)
| .+...+ +.+++.+||+|-|..|--........|... ....++ ..+......|+-..+|+++++|.. ..
T Consensus 72 -~----~~~~~l-~~l~~~~~v~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~-~~~~~~~~~ISST~IR~~l~~G~~-~~ 143 (160)
T 1od6_A 72 -G----LLVDFV-RRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLF-ILAATRYSFVSSTMVKEIARYGGD-VS 143 (160)
T ss_dssp -S----CHHHHH-HHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTTCEEEE-EECCGGGTTCCHHHHHHHHHTTCC-CT
T ss_pred -c----hHHHHH-HHcCCCEEEEeCCcccchHHHHHHHHhCcCCCCCCCEEE-EeCCCCCCcccHHHHHHHHHcCCC-hh
Confidence 3 222233 779999999998843221000000000000 000000 011111236788889999999986 56
Q ss_pred CCCchhHHHHHHHHHH
Q 013115 418 GFMCPGGWKVLVQYYE 433 (449)
Q Consensus 418 ~F~rPeV~~iL~~~y~ 433 (449)
.|.+|+|++.|.+.|+
T Consensus 144 ~~vP~~V~~~I~~~~~ 159 (160)
T 1od6_A 144 KLVPPATLRALKAKLG 159 (160)
T ss_dssp TTSCHHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHhc
Confidence 7999999999998774
No 10
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=97.71 E-value=0.00055 Score=62.22 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=90.9
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCC---CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF---TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~---tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~il 334 (449)
++..=|-||+|+||..|++.|. +.. +-+.+-+..+. +|...++.+.|++-.+.++.+.-++.+.+ .++
T Consensus 6 ~i~~G~Fdp~H~GH~~l~~~a~----~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v--~v~ 76 (181)
T 1ej2_A 6 GLLVGRMQPFHRGHLQVIKSIL----EEV---DELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRY--YII 76 (181)
T ss_dssp EEEEECCTTCCHHHHHHHHHHT----TTC---SEEEEEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTTCCGGGE--EEE
T ss_pred EEEEEEcCCcCHHHHHHHHHHH----HhC---CeeEEEECCCCCCcCCCCCCCHHHHHHHHHHHHhhCCCCCCcE--EEE
Confidence 3333499999999999987553 332 33333221221 24557899999999998776321222333 344
Q ss_pred CCCcccCCchHHHHHHHHHH-hcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCccccccchHHHHHHHhCCC
Q 013115 335 PSPMHYAGPTEVQWHAKARI-NAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTFARSGE 413 (449)
Q Consensus 335 P~~MryAGPREAllHAiiRk-NyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p~~vR~~Lr~G~ 413 (449)
+....+ ....|+..+++ .++|+.+++|||.. . .++... .-++. ..|...+..|+-..+|+++++|.
T Consensus 77 ~~d~~~---~~~~w~~~~~~l~~~~~~~v~gr~~~--~------~~~~~~-~i~~~-~~~~~~~~~ISST~IR~~l~~G~ 143 (181)
T 1ej2_A 77 PVQDIE---CNALWVGHIKMLTPPFDRVYSGNPLV--Q------RLFSED-GYEVT-APPLFYRDRYSGTEVRRRMLDDG 143 (181)
T ss_dssp ECCCCS---CHHHHHHHHHHHSCCCSEEECCCHHH--H------HHHHHT-TCCEE-CCCCSSTTTSSHHHHHHHHHHTC
T ss_pred ecCccC---CHHHHHHHHHHHCCCCCEEEECCHHH--H------HHHHhC-CeEEE-ecCCCccCcCcHHHHHHHHHcCC
Confidence 544444 24578886665 56899999998851 0 010000 00011 11222223488899999999998
Q ss_pred CCCCCCCchhHHHHHHHH
Q 013115 414 NPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 414 ~pP~~F~rPeV~~iL~~~ 431 (449)
. ...+.+++|++.|.+.
T Consensus 144 ~-i~~lvP~~V~~yI~~~ 160 (181)
T 1ej2_A 144 D-WRSLLPESVVEVIDEI 160 (181)
T ss_dssp C-CGGGSCHHHHHHHHHT
T ss_pred C-hhHhCCHHHHHHHHHc
Confidence 6 4578999999998754
No 11
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=97.69 E-value=0.0014 Score=57.47 Aligned_cols=145 Identities=18% Similarity=0.100 Sum_probs=87.1
Q ss_pred eecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 013115 261 FQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (449)
Q Consensus 261 FQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mry 340 (449)
.=|-||+|+||..|++.|. +.. +-+++-|.....|...++.+.|++-.+..+. + +| ...+.-+ .
T Consensus 7 ~GsFDpvH~GH~~l~~~a~----~~~---d~v~v~~~~~p~k~~~~~~~~R~~ml~~a~~-~-~~--~v~v~~~--~--- 70 (158)
T 1qjc_A 7 PGTFDPITNGHIDIVTRAT----QMF---DHVILAIAASPSKKPMFTLEERVALAQQATA-H-LG--NVEVVGF--S--- 70 (158)
T ss_dssp EECCTTCCHHHHHHHHHHH----TTS---SEEEEEEESCCSSCCSSCHHHHHHHHHHHTT-T-CT--TEEEEEE--C---
T ss_pred EecCCCCCHHHHHHHHHHH----HhC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHh-c-CC--CeEEccc--c---
Confidence 3389999999999987653 442 3445546555556667899999999987664 2 33 2333333 2
Q ss_pred CCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCC-----CCCCCCccchhhhhhccCccc-cccchHHHHHHHhCCCC
Q 013115 341 AGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEK-----RDLYDPDHGKKVLSMALGLEK-LNILPFRMRTFARSGEN 414 (449)
Q Consensus 341 AGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~-----~~~Yd~~~aq~i~~~~~g~~~-l~i~p~~vR~~Lr~G~~ 414 (449)
+ .+...+ +.+++.+||+|-|...=-..... +.++.. ...+ ...+ ..+ ..|+-..+|+++++|..
T Consensus 71 -~----~~~~~l-~~l~~~~~v~G~d~~~~~~~~~~~~~~~r~~~~~--~~~i-~~~~-~~~~~~iSST~IR~~i~~g~~ 140 (158)
T 1qjc_A 71 -D----LMANFA-RNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPE--LESV-FLMP-SKEWSFISSSLVKEVARHQGD 140 (158)
T ss_dssp -S----CHHHHH-HHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTT--SEEE-EECC-CGGGTTCCHHHHHHHHHTTCC
T ss_pred -h----HHHHHH-HHcCCCEEEEeccchhhhHHHHHHHHhCccCCCC--CCEE-EEEC-CCCCCccCHHHHHHHHHcCCC
Confidence 1 122333 66799999999874320000000 000000 0000 0011 223 35788889999999986
Q ss_pred CCCCCCchhHHHHHHHHH
Q 013115 415 PPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 415 pP~~F~rPeV~~iL~~~y 432 (449)
...+.+|+|++.|.+.|
T Consensus 141 -~~~~vP~~V~~yI~~~~ 157 (158)
T 1qjc_A 141 -VTHFLPENVHQALMAKL 157 (158)
T ss_dssp -CGGGSCHHHHHHHHHHH
T ss_pred -hhHhCCHHHHHHHHHhh
Confidence 45799999999998765
No 12
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=97.53 E-value=0.00075 Score=62.81 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=94.1
Q ss_pred EEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCC-CCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 013115 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKA-DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPS 336 (449)
Q Consensus 259 vaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-~tK~-gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~ 336 (449)
+..=|-||+|.||..+++.|.+.+ +. +.+++-|... ..|+ .-++.+.|++-.+.+++ + .| . +.+.+.
T Consensus 7 i~~GsFdPiH~GH~~l~~~a~~~~---~~--d~v~~~~~~~~~~k~~~~~~~~~R~~ml~~a~~-~-~~-~---v~v~~~ 75 (213)
T 1k4m_A 7 LFGGTFDPVHYGHLKPVETLANLI---GL--TRVTIIPNNVPPHRPQPEANSVQRKHMLELAIA-D-KP-L---FTLDER 75 (213)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHH---TC--SCEEEEECSSCTTSCCCSSCHHHHHHHHHHHHT-T-CT-T---EEECCH
T ss_pred EEEeCcCCCCHHHHHHHHHHHHHc---CC--CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHhc-c-CC-C---EEEeHH
Confidence 344599999999999998776543 21 2334444433 2342 46899999999997775 2 22 2 355666
Q ss_pred CcccCCch--HHHHHHHHHHhcCCc---EeeecCCCCC-CCC----------------CCCCCC--CCCCccchhhhh--
Q 013115 337 PMHYAGPT--EVQWHAKARINAGAN---FYIVGRDPAG-MGH----------------PTEKRD--LYDPDHGKKVLS-- 390 (449)
Q Consensus 337 ~MryAGPR--EAllHAiiRkNyGcT---HfIVGRDHAG-vG~----------------~~~~~~--~Yd~~~aq~i~~-- 390 (449)
....+||. .-.+.. +++.||++ .||+|-|..- ... +.++.+ .++ +..+..+.
T Consensus 76 e~~~~~~s~t~~~l~~-l~~~~~~~~~~~~i~G~D~~~~l~~W~~~~~i~~~~~~vv~~R~~~~~~~~~-~~~~~~~~~~ 153 (213)
T 1k4m_A 76 ELKRNAPSYTAQTLKE-WRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQ-PQYQQWLEDH 153 (213)
T ss_dssp HHHCSSCCCHHHHHHH-HHHHHCTTSCEEEEEEHHHHHHGGGSTTHHHHHHHCEEEEECCTTCCSSCSS-HHHHHHHHHH
T ss_pred HhcCCCCCcHHHHHHH-HHHHhCCCCcEEEEEehhhhhhhhccCCHHHHHhhCcEEEEECCCCchhhhh-hHHHHHHhhh
Confidence 66666754 233333 77888998 8999986431 000 000000 000 11111110
Q ss_pred -----------------hccCccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 391 -----------------MALGLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 391 -----------------~~~g~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
..+ ...+.|+...+|+++++|.. ...+.+|+|++.|.+
T Consensus 154 ~~~~~~~l~~~~~~~i~~~~-~~~~~iSST~IR~~i~~g~~-i~~lvP~~V~~yI~~ 208 (213)
T 1k4m_A 154 LTHNPEDLHLQPAGKIYLAE-TPWFNISATIIRERLQNGES-CEDLLPEPVLTYINQ 208 (213)
T ss_dssp BCSCTTHHHHSSSCCEEEEC-CCCCCCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHH
T ss_pred hcchhhhhhhccCCeEEEEe-CCcccCCHHHHHHHHHcCCC-chhcCCHHHHHHHHH
Confidence 001 12356777779999999987 567899999998875
No 13
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=97.48 E-value=0.0029 Score=57.85 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=90.0
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv-G~tK--~gDi~~~vRvr~y~all~~~ylP~~~~~L~il 334 (449)
++..=+-||+|+||..+++.|.+.+ + .+.+++-|.. -..| ..-++.+.|++-.+.+++ + +| . +.+.
T Consensus 10 ~v~~GsFdp~H~GH~~l~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~~R~~ml~~a~~-~-~~-~---v~v~ 78 (194)
T 1kam_A 10 GIFGGTFDPPHNGHLLMANEVLYQA---G--LDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQ-S-NP-S---FKLE 78 (194)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHHT---T--CSEEEEEECCCC---------CHHHHHHHHHHHHT-T-CT-T---EEEC
T ss_pred EEEEeccccccHHHHHHHHHHHHHh---C--CCEEEEEECCCCCCcCCcCCCCHHHHHHHHHHHHc-C-CC-C---eEEe
Confidence 4444699999999999998765432 1 1334443331 1223 356899999999998775 2 23 2 3566
Q ss_pred CCCcccCCchHHH-HHHHHHHhcCCc--EeeecCCCC-CCCCCCCCCCCCCCccchhhhhhc-------cC---------
Q 013115 335 PSPMHYAGPTEVQ-WHAKARINAGAN--FYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMA-------LG--------- 394 (449)
Q Consensus 335 P~~MryAGPREAl-lHAiiRkNyGcT--HfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~-------~g--------- 394 (449)
+.....+||.=.+ .-..+++.|.-+ .||+|-|.. +.. .+|+ .+++++.+ +|
T Consensus 79 ~~e~~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~------~W~~---~e~i~~~~~~~v~~R~g~~~~l~~~i 149 (194)
T 1kam_A 79 LVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLP------KWYK---LDELLNLIQFIGVKRPGFHVETPYPL 149 (194)
T ss_dssp CGGGSTTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCC------CCHH---HHHHHHHSEEEEEECSSCCCCCSSCC
T ss_pred HHHhcCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhc------cccC---HHHHHHhCcEEEEECCCcchhcCCCE
Confidence 7777777763222 222344555544 899999974 322 1221 12222211 11
Q ss_pred ----ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 395 ----LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 395 ----~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
...+.|+-..+|+++++|.. -..+.+|+|++.|.+
T Consensus 150 ~~~~~~~~~ISST~IR~~i~~g~~-~~~lvP~~V~~yI~~ 188 (194)
T 1kam_A 150 LFADVPEFEVSSTMIRERFKSKKP-TDYLIPDKVKKYVEE 188 (194)
T ss_dssp EEEECCCBCCCHHHHHHHHHHTCC-CTTTSCHHHHHHHHH
T ss_pred EEeCCCCCCcCHHHHHHHHHcCCC-chhhCCHHHHHHHHH
Confidence 11346778889999999987 456889999998875
No 14
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=97.28 E-value=0.00056 Score=61.91 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=89.9
Q ss_pred EEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc-cCCCC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 013115 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL-GGFTK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (449)
Q Consensus 259 vaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl-vG~tK--~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP 335 (449)
+..=+-||+|+||..+++.|.+.+ + .+.+++-|. --..| ..-.+.+.|++-.+.+++ + .| . +.+.+
T Consensus 6 i~~GsFDPvH~GH~~li~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~~R~~ml~~~~~-~-~~--~--v~v~~ 74 (189)
T 2qtr_A 6 IIGGTFDPPHYGHLLIANEVYHAL---N--LEEVWFLPNQIPPHKQGRNITSVESRLQMLELATE-A-EE--H--FSICL 74 (189)
T ss_dssp EEEECCSSCCHHHHC-CHHHHHHT---T--CSEEEEEECSSCTTCTTSCCCCHHHHHHHHHHHHT-T-CT--T--EEECC
T ss_pred EEecCcccccHHHHHHHHHHHHHc---C--CCEEEEEECCCCCCccCCCCCCHHHHHHHHHHHhC-C-CC--C--EEEeh
Confidence 333489999999999998765432 2 133333333 12334 456899999999987774 2 22 2 36678
Q ss_pred CCcccCCchHHHHHHHHHHhcCCcE------eeecCCCC-CCCCCCCCCCCCCCccchhhhhhc-------cC-------
Q 013115 336 SPMHYAGPTEVQWHAKARINAGANF------YIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMA-------LG------- 394 (449)
Q Consensus 336 ~~MryAGPREAllHAiiRkNyGcTH------fIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~-------~g------- 394 (449)
.....+||.=.+ . .+ +.+++.+ ||+|-|.. |.. .+|+. +++++.. ++
T Consensus 75 ~e~~~~~~~~~~-~-~l-~~l~~~~p~~~~~~v~G~D~~~~~~------~w~~~---~~l~~~~~~~v~~r~~~~~~~~~ 142 (189)
T 2qtr_A 75 EELSRKGPSYTY-D-TM-LQLTKKYPDVQFHFIIGGDMVEYLP------KWYNI---EALLDLVTFVGVARPGYKLRTPY 142 (189)
T ss_dssp TGGGSCSCCCHH-H-HH-HHHHHHCTTCEEEEEEEHHHHHHGG------GSTTH---HHHTTTCEEEEECCTTCCCCCSS
T ss_pred HHhcCCCCCCHH-H-HH-HHHHHHCCCCCEEEEEehhhhhhhh------ccCCH---HHHHHhCCEEEEECCCCCccCCc
Confidence 888888875222 1 11 4455555 89998754 222 11211 1121111 01
Q ss_pred ------ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 395 ------LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 395 ------~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
.....|+-..+|+++++|.. -..+.+|+|++.|.+
T Consensus 143 ~v~~~~~~~~~iSST~IR~~l~~g~~-~~~lvP~~V~~yI~~ 183 (189)
T 2qtr_A 143 PITTVEIPEFAVSSSLLRERYKEKKT-CKYLLPEKVQVYIER 183 (189)
T ss_dssp CCEEECCCCCCCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHH
T ss_pred eEEEEcCCCCccCHHHHHHHHHcCCC-chhcCCHHHHHHHHH
Confidence 12357788889999999987 456889999998875
No 15
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=97.26 E-value=0.0047 Score=55.06 Aligned_cols=141 Identities=12% Similarity=0.058 Sum_probs=85.5
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~ 337 (449)
++..=|-||+|+||..|++.|.+ .. +-+++-|..-..|..-++.+.|++-.+..+. + +| ... +.+..
T Consensus 5 ~i~~GsFDpvH~GH~~li~~a~~----~~---d~v~v~~~~~p~k~~l~~~~~R~~ml~~a~~-~-~~--~v~--v~~~e 71 (169)
T 1o6b_A 5 AVCPGSFDPVTYGHLDIIKRGAH----IF---EQVYVCVLNNSSKKPLFSVEERCELLREVTK-D-IP--NIT--VETSQ 71 (169)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH----HS---SEEEEEECCCCSSCCSSCHHHHHHHHHHHHT-T-CT--TEE--EEECS
T ss_pred EEEEEeeCCCCHHHHHHHHHHHH----hC---CEEEEEECCCCccCCCCCHHHHHHHHHHHHh-c-CC--CEE--Ecccc
Confidence 34445999999999999876644 32 3344434433345567899999998887764 2 23 233 33433
Q ss_pred cccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccch-hhhhh----------ccCcc-ccccchHHH
Q 013115 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK-KVLSM----------ALGLE-KLNILPFRM 405 (449)
Q Consensus 338 MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq-~i~~~----------~~g~~-~l~i~p~~v 405 (449)
-| ... .-+.+++..||+|-|... + | + +..+ ..+.. ..... ...|+-..+
T Consensus 72 -~~------~~~--~l~~l~~~~~i~G~d~~~-~-------~-~-~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~I 132 (169)
T 1o6b_A 72 -GL------LID--YARRKNAKAILRGLRAVS-D-------F-E-YEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIV 132 (169)
T ss_dssp -SC------HHH--HHHHTTCSEEEEEECSGG-G-------H-H-HHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHH
T ss_pred -hH------HHH--HHHHcCCCEEEEcCcccc-c-------h-H-HHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHH
Confidence 11 222 126789999999998642 1 0 0 0000 00000 01111 235778889
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHH
Q 013115 406 RTFARSGENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 406 R~~Lr~G~~pP~~F~rPeV~~iL~~~ 431 (449)
|+++++|+.+ ..+.+|+|++.|.+.
T Consensus 133 R~~l~~G~~~-~~~vP~~V~~yi~~~ 157 (169)
T 1o6b_A 133 KEVARYDGSV-SEFVPPEVELALQQK 157 (169)
T ss_dssp HHHHHTTCCC-TTTSCHHHHHHHHHH
T ss_pred HHHHHcCCCh-hHHCCHHHHHHHHHh
Confidence 9999999875 468899999999875
No 16
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=97.07 E-value=0.0052 Score=55.07 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=84.5
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLh-PlvG--~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
|-||+|.||..|++.|. +.. +-+.+- |..- .+|...++.+.|++-.+.++++ +|.+ + .+++....
T Consensus 8 sFdp~H~GH~~l~~~a~----~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~--~~~~-v--~v~~~d~l 75 (168)
T 1f9a_A 8 RFQPFHKGHLEVIKKIA----EEV---DEIIIGIGSAQKSHTLENPFTAGERILMITQSLKD--YDLT-Y--YPIPIKDI 75 (168)
T ss_dssp CCTTCCHHHHHHHHHHT----TTC---SEEEEEECSTTCCSSSSCCSCHHHHHHHHHHHHTT--SSCE-E--EEEECCCC
T ss_pred ecCCcCHHHHHHHHHHH----HhC---CeEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCc-e--EEEeeCCc
Confidence 89999999999987553 332 333332 2221 1244578999999999988863 3422 2 22333333
Q ss_pred cCCchHHHHHHHHH-HhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc----cCccccc---cchHHHHHHHhC
Q 013115 340 YAGPTEVQWHAKAR-INAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA----LGLEKLN---ILPFRMRTFARS 411 (449)
Q Consensus 340 yAGPREAllHAiiR-kNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~----~g~~~l~---i~p~~vR~~Lr~ 411 (449)
+. +..|+..++ ..+.|+.+++||+. + .+++... -....+. |+-..+|+++++
T Consensus 76 ~~---~~~w~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~ 135 (168)
T 1f9a_A 76 EF---NSIWVSYVESLTPPFDIVYSGNPL------------V-----RVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLN 135 (168)
T ss_dssp SC---GGGHHHHHHHHSCCCSEEECCCHH------------H-----HHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHH
T ss_pred cc---HHHHHHHHHHhccCCCEEEECcHH------------H-----HHhhhhcCcEEEeCCccccCcccHHHHHHHHHc
Confidence 32 347887654 45578877777653 1 1122110 0112344 888999999999
Q ss_pred CCCCCCCCCchhHHHHHHHH
Q 013115 412 GENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 412 G~~pP~~F~rPeV~~iL~~~ 431 (449)
|.. ...|.+|.|++.|.+.
T Consensus 136 g~~-i~~lvP~~V~~yI~~~ 154 (168)
T 1f9a_A 136 GEK-WEHLVPKAVVDVIKEI 154 (168)
T ss_dssp TCC-CGGGSCHHHHHHHHHH
T ss_pred CCC-hhHcCCHHHHHHHHHc
Confidence 986 4678999999988654
No 17
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=96.78 E-value=0.016 Score=52.82 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=84.5
Q ss_pred ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 013115 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (449)
Q Consensus 262 QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryA 341 (449)
=|-||+|.||..+++.| .+.. +-+++-|..-..|..-++.+-|++-.+..++ -+| + +.+..+.
T Consensus 10 GsFDPiH~GHl~i~~~a----~~~~---d~viv~v~~~p~K~~~~~~~~R~~ml~~a~~--~~~-~-v~v~~~e------ 72 (168)
T 3f3m_A 10 GSFDPITYGHLDIIERS----TDRF---DEIHVCVLKNSKKEGTFSLEERMDLIEQSVK--HLP-N-VKVHQFS------ 72 (168)
T ss_dssp ECCTTCCHHHHHHHHHH----GGGS---SEEEEEECC-----CCSCHHHHHHHHHHHTT--TCT-T-EEEEECC------
T ss_pred EEcCcCCHHHHHHHHHH----HHhC---CEEEEEEcCCCCCCCCCCHHHHHHhHHHHhc--CCC-C-EEEEEcC------
Confidence 38999999999998654 3443 4455545544457778999999999998775 233 2 3333332
Q ss_pred CchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccch-----hhhh-h-----ccCccccc-cchHHHHHHH
Q 013115 342 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK-----KVLS-M-----ALGLEKLN-ILPFRMRTFA 409 (449)
Q Consensus 342 GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq-----~i~~-~-----~~g~~~l~-i~p~~vR~~L 409 (449)
|-. .=.-+.++++.||.|-|-. . || + ++.+ +-+. . ......+. |+-..+|+++
T Consensus 73 ~~t-----vd~~~~l~~~~~I~G~d~~--~------d~-~-~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~ 137 (168)
T 3f3m_A 73 GLL-----VDYCEQVGAKTIIRGLRAV--S------DF-E-YELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVA 137 (168)
T ss_dssp SCH-----HHHHHHHTCCEEEEEECTT--C------CH-H-HHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHH
T ss_pred CCH-----HHHHHHcCCCEEEEcCCch--h------hh-h-HHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHH
Confidence 411 1122557999999996632 1 12 0 1111 0010 0 01123355 7777799999
Q ss_pred hCCCCCCCCCCchhHHHHHHHHHH
Q 013115 410 RSGENPPDGFMCPGGWKVLVQYYE 433 (449)
Q Consensus 410 r~G~~pP~~F~rPeV~~iL~~~y~ 433 (449)
+.|..+ ..|.+|.|++.|.+.++
T Consensus 138 ~~g~~i-~~lvP~~V~~~i~~~~~ 160 (168)
T 3f3m_A 138 AYRADI-SEFVPPYVEKALKKKFK 160 (168)
T ss_dssp HTTCCC-TTTSCHHHHHHHHHHHC
T ss_pred HcCCCh-hHHCCHHHHHHHHHhhc
Confidence 999876 68999999999887764
No 18
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=96.72 E-value=0.011 Score=54.77 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=89.6
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP 335 (449)
+.++..=+-||+|+||..+++.|.+ .+ +-+.+-+..-..|..-++.+-|++..+.+++ + +| .+.+..|.
T Consensus 23 ki~v~~GsFDpiH~GHl~li~~A~~----~~---d~viv~v~~~p~K~~l~s~eeR~~ml~~~~~-~-v~--~v~v~~f~ 91 (187)
T 3k9w_A 23 VVAVYPGTFDPLTRGHEDLVRRASS----IF---DTLVVGVADSRAKKPFFSLEERLKIANEVLG-H-YP--NVKVMGFT 91 (187)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH----HS---SEEEEEEECCGGGCCSSCHHHHHHHHHHHHT-T-CT--TEEEEEES
T ss_pred EEEEEEEeCCcCcHHHHHHHHHHHH----HC---CcEEEEEecCCccCCCCCHHHHHHHHHHHhc-c-CC--cEEEEech
Confidence 3455555999999999999876643 32 3333333333446667899999999998875 2 33 23333332
Q ss_pred CCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC-CCCccch--hhhh-h-----c-cCccccccchHHH
Q 013115 336 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL-YDPDHGK--KVLS-M-----A-LGLEKLNILPFRM 405 (449)
Q Consensus 336 ~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~-Yd~~~aq--~i~~-~-----~-~g~~~l~i~p~~v 405 (449)
|- .. - ..+.+|+..+|+|-|-. . || |+.+-++ +-+. . . +......|+-..+
T Consensus 92 ------~~---~~-d-~l~~l~~~~iv~G~r~~--~------Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~I 152 (187)
T 3k9w_A 92 ------GL---LK-D-FVRANDARVIVRGLRAV--S------DFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIV 152 (187)
T ss_dssp ------SC---HH-H-HHHHTTCSEEEEECCTT--S------CHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHH
T ss_pred ------hh---HH-H-HHHHcCCCEEEECCCcc--c------ccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHH
Confidence 21 11 1 23568999999995421 1 22 2111111 1110 0 0 1111245666679
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHHHHh
Q 013115 406 RTFARSGENPPDGFMCPGGWKVLVQYYES 434 (449)
Q Consensus 406 R~~Lr~G~~pP~~F~rPeV~~iL~~~y~~ 434 (449)
|+.++.|.++ ..|.+|.|++.|.+-+..
T Consensus 153 Re~~~~g~~i-~~lVP~~V~~~i~~k~~~ 180 (187)
T 3k9w_A 153 REIAQLGGDV-SKFVFPSVEKWLTEKVAA 180 (187)
T ss_dssp HHHHHTTCCC-TTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCh-hHHCCHHHHHHHHHHhcc
Confidence 9999999976 779999999999887653
No 19
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=96.46 E-value=0.046 Score=49.45 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=84.3
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryAG 342 (449)
|-||+|.||..+++.| ++.+ +-+++-|.....|..-++.+.|++-.+..++ .+| .+.+..+. |
T Consensus 20 sFdP~H~GHl~l~~~A----~~~~---D~viv~v~~~~~kk~~~~~~~R~~ml~~a~~--~~~--~v~v~~~e------~ 82 (173)
T 1vlh_A 20 SFDPITLGHVDIIKRA----LSIF---DELVVLVTENPRKKCMFTLEERKKLIEEVLS--DLD--GVKVDVHH------G 82 (173)
T ss_dssp CCTTCCHHHHHHHHHH----HTTC---SEEEEEEECCTTCCCSSCHHHHHHHHHHHTT--TCT--TEEEEEEC------S
T ss_pred EECcCcHHHHHHHHHH----HHHC---CEEEEEEeCCCCCCCCCCHHHHHHHHHHHhc--CCC--CEEEecCc------c
Confidence 8999999999998654 4553 5566656665566678999999999997775 234 24333333 3
Q ss_pred chHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCC-----CC---ccchhhhhhccCccccc-cchHHHHHHHhCCC
Q 013115 343 PTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLY-----DP---DHGKKVLSMALGLEKLN-ILPFRMRTFARSGE 413 (449)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y-----d~---~~aq~i~~~~~g~~~l~-i~p~~vR~~Lr~G~ 413 (449)
+-.-.-+.++++.||-| +..-.+-+..+ .. .+...++- .....+. |+-..+|+++++|.
T Consensus 83 -----~tvd~l~~l~~~~~i~g-----l~~w~d~~~~~~~~~~~r~~~~~~~~i~l--~~~~~~~~iSST~IR~~i~~g~ 150 (173)
T 1vlh_A 83 -----LLVDYLKKHGIKVLVRG-----LRAVTDYEYELQMALANKKLYSDLETVFL--IASEKFSFISSSLVKEVALYGG 150 (173)
T ss_dssp -----CHHHHHHHHTCCEEEEE-----ECTTSCHHHHHHHHHHHHHHSTTCEEEEE--ECCGGGTTCCHHHHHHHHHTTC
T ss_pred -----hHHHHHHHhCCCeEEeC-----CCcccchhhccchhhcCCCCCCCCcEEEE--eCCCCCCceeHHHHHHHHHcCC
Confidence 11122255788888844 21100000000 00 00011110 1112234 77778999999998
Q ss_pred CCCCCCCchhHHHHHHHHHHh
Q 013115 414 NPPDGFMCPGGWKVLVQYYES 434 (449)
Q Consensus 414 ~pP~~F~rPeV~~iL~~~y~~ 434 (449)
. ...|.+|.|++.|.+.|++
T Consensus 151 ~-i~~lvP~~V~~yI~~~~~~ 170 (173)
T 1vlh_A 151 D-VTEWVPPEVARALNEKLKE 170 (173)
T ss_dssp C-CTTTSCHHHHHHHHHHTC-
T ss_pred C-hhHcCCHHHHHHHHHHHhc
Confidence 6 4568999999999887743
No 20
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=96.26 E-value=0.0057 Score=55.41 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=80.3
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~ 337 (449)
++..=|-||+|.||..+++.| .+.+ +-+++-|..-+.|..-++.+.|++..+.++. . ++ +.+..+
T Consensus 8 ~i~~GsFDPiH~GHl~li~~A----~~~~---d~viv~v~~~~~K~~~~~~~~R~~m~~~~~~--~--~~-v~V~~~--- 72 (162)
T 4f3r_A 8 AIYPGTFDPLTNGHVDIIERA----LPLF---NKIIVACAPTSRKDPHLKLEERVNLIADVLT--D--ER-VEVLPL--- 72 (162)
T ss_dssp EEEEECCTTCCHHHHHHHHHH----GGGC---SEEEEEECCC------CCHHHHHHHHHHHCC--C--TT-EEEEEC---
T ss_pred EEEEEEcCCCCHHHHHHHHHH----HHHC---CcEEEEEecCCccCCCCCHHHHHHHHHHhhC--C--CC-EEEEec---
Confidence 333348999999999998654 4553 5555545544556667899999999988774 2 33 333433
Q ss_pred cccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC-CCCccch--hhhh-h------ccCccccccchHHHHH
Q 013115 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL-YDPDHGK--KVLS-M------ALGLEKLNILPFRMRT 407 (449)
Q Consensus 338 MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~-Yd~~~aq--~i~~-~------~~g~~~l~i~p~~vR~ 407 (449)
.| +.--.+ +.+|++.||.|-|-. . || |.-.-|+ +-++ . .+...-..|+-..+|+
T Consensus 73 ---~~----l~~~~~-~~~~~~~~v~G~r~~--~------Df~~e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe 136 (162)
T 4f3r_A 73 ---TG----LLVDFA-KTHQANFILRGLRAV--S------DFDYEFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVRE 136 (162)
T ss_dssp ---CS----CHHHHH-HHTTCCEEEEEECSH--H------HHHHHHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHH
T ss_pred ---cc----hHHHHH-HHcCCCEEEECCCch--h------hhhhHHHHHHHHHHhCCCccEEEEECCcccccccHHHHHH
Confidence 23 111223 457999999995411 1 22 1111010 0110 0 0111123556666999
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHH
Q 013115 408 FARSGENPPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 408 ~Lr~G~~pP~~F~rPeV~~iL~~~y 432 (449)
.++.|.++ ..|.+|.|++.|.+-+
T Consensus 137 ~~~~g~~i-~~~VP~~V~~~l~~~~ 160 (162)
T 4f3r_A 137 IVTLGGDV-SPFVPPLVARHLQKRR 160 (162)
T ss_dssp HHHTTCCC-TTTSCHHHHHHC----
T ss_pred HHHcCCCh-hHhCCHHHHHHHHHHh
Confidence 99999977 7899999999887654
No 21
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=96.20 E-value=0.011 Score=53.47 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=83.7
Q ss_pred ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccC
Q 013115 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (449)
Q Consensus 262 QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~MryA 341 (449)
=|-||+|.||..+++.| .+.+ +-+.+-+.....|..-++.+-|++..+..++ ..| + +.+..+ .
T Consensus 9 GsFDPiH~GHl~ii~~A----~~~~---D~viv~v~~~~~K~~~~~~~eR~~ml~~a~~--~~~-~-v~v~~~------~ 71 (157)
T 3nv7_A 9 GTFDPVTNGHIDIIHRS----SELF---EKLIVAVAHSSAKNPMFSLDERLKMIQLATK--SFK-N-VECVAF------E 71 (157)
T ss_dssp ECCTTCCHHHHHHHHHH----HTTS---SEEEEEEECCGGGCCSSCHHHHHHHHHHHHT--TST-T-EEEEEE------C
T ss_pred EEcCCCCHHHHHHHHHH----HHhC---CceEEEEccCCCCCCCCCHHHHHHHHHHHhc--CCC-c-EEEEec------C
Confidence 38999999999998755 4553 4455534444456678999999999998885 233 2 333332 2
Q ss_pred CchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC-CCCccchhhhhh-ccCccc---------cccchHHHHHHHh
Q 013115 342 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL-YDPDHGKKVLSM-ALGLEK---------LNILPFRMRTFAR 410 (449)
Q Consensus 342 GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~-Yd~~~aq~i~~~-~~g~~~---------l~i~p~~vR~~Lr 410 (449)
| ++-. ..+.+|++.+|-|=.. ++ || |+-+-|+ .-.. .++.+. ..|+...+|+.++
T Consensus 72 ~----l~~~-~~~~~~~~~ivrG~r~--~~------D~~ye~~~a~-~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~ 137 (157)
T 3nv7_A 72 G----LLAY-LAKEYHCKVLVRGLRV--VS------DFEYELQMGY-ANKSLNHELETLYFMPTLQNAFISSSIVRSIIA 137 (157)
T ss_dssp S----CHHH-HHHHTTCCCBCCCCSC--CC------CHHHHHHHHH-HHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHH
T ss_pred c----hHHH-HHHHcCCCEEEECCcc--cc------hhhhhHHHHH-HHHHhCCCceEEEEcCCcccceeeHHHHHHHHH
Confidence 3 3322 3456799988888332 22 23 2222111 0001 122222 2344455999999
Q ss_pred CCCCCCCCCCchhHHHHHHH
Q 013115 411 SGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 411 ~G~~pP~~F~rPeV~~iL~~ 430 (449)
.|.++ ..|-+|.|++.|.+
T Consensus 138 ~ggdv-~~~VP~~V~~~l~~ 156 (157)
T 3nv7_A 138 HKGDA-SHLVPKEIYPLISK 156 (157)
T ss_dssp TTCCC-TTTSCTTTHHHHCC
T ss_pred cCCCh-HHhCCHHHHHHHhh
Confidence 99985 67999999988753
No 22
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=96.04 E-value=0.032 Score=50.93 Aligned_cols=138 Identities=18% Similarity=0.202 Sum_probs=79.6
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE-EecCCCcccC
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIV-SIFPSPMHYA 341 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L-~ilP~~MryA 341 (449)
|-||+|.||..+++.| .+.. +-+++-|..-+.|..-++.+-|++-.+..++ .+| + +.+ ..+.
T Consensus 10 sFDPiH~GHl~i~~~a----~~~~---D~viv~v~~~~~K~~~~~~~~R~~ml~~a~~--~~~-~-v~v~~~~e------ 72 (171)
T 3nd5_A 10 SFDPMTNGHLNLIERS----AKLF---DEVIIGVFINTSKQTLFTPEEKKYLIEEATK--EMP-N-VRVIMQET------ 72 (171)
T ss_dssp CCTTCCHHHHHHHHHH----HTTC---SEEEEEEEC------CCCHHHHHHHHHHHHT--TCT-T-EEEEEECS------
T ss_pred EccccCHHHHHHHHHH----HHHC---CCeEEEEecCCCCCCCCCHHHHHHHHHHHHc--cCC-C-EEEeeCCC------
Confidence 8999999999998654 3443 4455545555567778999999999998775 233 2 333 4443
Q ss_pred CchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC-CCCccch--hhhh-h-----ccCcccc-ccchHHHHHHHhC
Q 013115 342 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL-YDPDHGK--KVLS-M-----ALGLEKL-NILPFRMRTFARS 411 (449)
Q Consensus 342 GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~-Yd~~~aq--~i~~-~-----~~g~~~l-~i~p~~vR~~Lr~ 411 (449)
|- .. =..+.++++.||.|-|-. . || |.-+-|+ +-++ . ......+ .|+-..+|+.++.
T Consensus 73 ~~---tv--d~~~~l~~~~~i~G~~~~--~------d~~~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~ 139 (171)
T 3nd5_A 73 QL---TV--ESAKSLGANFLIRGIRNV--K------DYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRF 139 (171)
T ss_dssp SC---HH--HHHHHHTCCEEEEEECSH--H------HHHHHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred Cc---HH--HHHHHCCCCEEEECCCch--h------hhHHHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHc
Confidence 21 11 112456888999994421 1 12 1100000 0110 0 0001123 5667779999999
Q ss_pred CCCCCCCCCchhHHHHHHHH
Q 013115 412 GENPPDGFMCPGGWKVLVQY 431 (449)
Q Consensus 412 G~~pP~~F~rPeV~~iL~~~ 431 (449)
|..+ ..|.+|.|++-|.+.
T Consensus 140 g~~i-~~lVP~~V~~~i~~~ 158 (171)
T 3nd5_A 140 GGDV-SDYLPPNIYHALKQK 158 (171)
T ss_dssp TCCC-GGGSCHHHHHHHHHC
T ss_pred CCCh-hHhCCHHHHHHHHHh
Confidence 9875 678999999988753
No 23
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=96.01 E-value=0.072 Score=52.10 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=86.4
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG---FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG---~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
|-||+|.||..+++.|+ +.. +-+++-+... .+|..-++.+.|++-.+..+++.-+|..++.+..++.. .
T Consensus 15 tFdP~h~GHl~~~~~a~----~~~---d~~~~~v~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~~d~-~ 86 (352)
T 2qjt_B 15 RFQPFHKGHLHNIIIAL----QNS---KKVIINIGSCFNTPNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLADY-F 86 (352)
T ss_dssp CCTTCCHHHHHHHHHHH----HSE---EEEEEEEEEESCCCCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEEECC-T
T ss_pred ecCCCChHHHHHHHHHH----HhC---CcEEEEECCCCCCcccCCCCCHHHHHHHHHHHhccccCccceEEEEEcCCC-c
Confidence 89999999999987653 332 3333323322 24566789999999999888654455555544444322 2
Q ss_pred cCCchHHHHHHHHHHhc------CCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhc---cCccccccchHHHHHHHh
Q 013115 340 YAGPTEVQWHAKARINA------GANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA---LGLEKLNILPFRMRTFAR 410 (449)
Q Consensus 340 yAGPREAllHAiiRkNy------GcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~---~g~~~l~i~p~~vR~~Lr 410 (449)
+ + ..+|...+++.. .+...++|+.... ..++ ..++... .......|+...+|++++
T Consensus 87 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~iSST~IR~~~~ 151 (352)
T 2qjt_B 87 Y-Q--EQKWQDELRKNVYKHAKNNNSIAIVGHIKDS-------SSYY-----IRSFPEWDYIGVDNYKNFNATEFRQKFY 151 (352)
T ss_dssp T-C--HHHHHHHHHHHHTTTSCSSCCEEECCBSSSS-------HHHH-----HHHCTTSEECCBCCTTCCCHHHHHHHHH
T ss_pred C-C--hHHHHHHHHHHHHHhcccCCeEEEEcCCCCc-------chhh-----hhcCCccceeccCCCCCCCchHHHHHHh
Confidence 2 2 346766655432 2456666665211 0110 0111100 000123577888999999
Q ss_pred C-CCC-C-CCCCCch-hHHHHHHHHHHh
Q 013115 411 S-GEN-P-PDGFMCP-GGWKVLVQYYES 434 (449)
Q Consensus 411 ~-G~~-p-P~~F~rP-eV~~iL~~~y~~ 434 (449)
. |.. . -..|..+ .|++.|.++++.
T Consensus 152 ~~g~~~~~i~~lvP~~~va~~I~~w~~~ 179 (352)
T 2qjt_B 152 NGIISKQYMCSNDPKLGTYNFLTKFMDT 179 (352)
T ss_dssp TTCCCGGGCSCSSTTSHHHHHHHHHTTS
T ss_pred ccCcccchhhhcCChHHHHHHHHHHhcC
Confidence 7 721 1 3456788 899999988643
No 24
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=96.01 E-value=0.0069 Score=58.93 Aligned_cols=150 Identities=12% Similarity=0.047 Sum_probs=82.1
Q ss_pred EEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEE-cccc--CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 013115 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL-HPLG--GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (449)
Q Consensus 259 vaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLL-hPlv--G~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP 335 (449)
+..=|-||+|.||..|++.|.+.+ +-+.+ -|.. -.+|..-++.+.|++-.+..+.+ ++.++..+..+.
T Consensus 11 i~~G~FdP~H~GH~~li~~a~~~~-------d~v~v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~--~~~~~~~~i~~~ 81 (341)
T 2qjo_A 11 IYIGRFQPFHLGHLRTLNLALEKA-------EQVIIILGSHRVAADTRNPWRSPERMAMIEACLSP--QILKRVHFLTVR 81 (341)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHE-------EEEEEEEEEETCCCCSSSCSCHHHHHHHHHTTSCH--HHHTTEEEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhC-------CeEEEEECCcccCCCCCCCCCHHHHHHHHHHHhhh--ccCCeEEEEECC
Confidence 333489999999999988765432 22222 1211 12345568999999876655431 121223333332
Q ss_pred CCcccCCchHHHHHHHHH---Hhc---CCcEeeecCCCCCCCCCCCCCCCCCC-ccchhhhhhccCccccccchHHHHHH
Q 013115 336 SPMHYAGPTEVQWHAKAR---INA---GANFYIVGRDPAGMGHPTEKRDLYDP-DHGKKVLSMALGLEKLNILPFRMRTF 408 (449)
Q Consensus 336 ~~MryAGPREAllHAiiR---kNy---GcTHfIVGRDHAGvG~~~~~~~~Yd~-~~aq~i~~~~~g~~~l~i~p~~vR~~ 408 (449)
-. .++ ...|+.-++ +.+ +|+..++|.|..+.. +|.. +...+++. .+ ....|+-..+|++
T Consensus 82 d~-~~~---~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~-~~--~~~~iSST~IR~~ 147 (341)
T 2qjo_A 82 DW-LYS---DNLWLAAVQQQVLKITGGSNSVVVLGHRKDASS-------YYLNLFPQWDYLE-TG--HYPDFSSTAIRGA 147 (341)
T ss_dssp CC-TTC---HHHHHHHHHHHHHHHHTTCSCEEEEECCCSGGG-------GGGGSCTTSEEEE-CC--CCTTCCHHHHHHH
T ss_pred CC-cCC---hHHHHHHHHHHhHHhcCCCceEEEEcCCCCCCh-------HHHHhccccceee-cc--cCCCCCcHHHHHH
Confidence 21 111 123333321 222 289999999874322 1111 00111111 12 2467888889999
Q ss_pred HhCCCCCCCC-CCchhHHHHHHHH
Q 013115 409 ARSGENPPDG-FMCPGGWKVLVQY 431 (449)
Q Consensus 409 Lr~G~~pP~~-F~rPeV~~iL~~~ 431 (449)
+++|....-| +..+.|++.|.++
T Consensus 148 l~~g~~~~~~~lvp~~v~~~i~~~ 171 (341)
T 2qjo_A 148 YFEGKEGDYLDKVPPAIADYLQTF 171 (341)
T ss_dssp HHHTCGGGTTTTSCHHHHHHHHHH
T ss_pred HHcCCCcchhhhCCHHHHHHHHHh
Confidence 9999864311 5788999988776
No 25
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=95.99 E-value=0.004 Score=57.10 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=87.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc--
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH-- 339 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr-- 339 (449)
|-||+|.||..+.+ ++ +. .+-+++-|... ..|.+-++.+.|++-.+.++++ .|.... .+-.+...
T Consensus 10 sFdPih~GHl~i~~-a~----~~---~d~v~~~p~~~~~~k~~~~~~~~R~~m~~~a~~~--~~~~~~--~v~~~E~~l~ 77 (177)
T 3h05_A 10 AFNPPSLGHKSVIE-SL----SH---FDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFIKD--MGLSNV--QRSDLEQALY 77 (177)
T ss_dssp CCSSCCHHHHHHHT-TC----TT---SSEEEEEECC-------CCCHHHHHHHHHHHHHH--HCCTTE--EECCHHHHHC
T ss_pred ccchhhHHHHHHHH-HH----HH---CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCcE--EEEehhhhcc
Confidence 89999999999974 32 22 14455546542 3456779999999999988863 342222 33333221
Q ss_pred cCC-chH--HHHHHHHHHhcCCc--EeeecCCCC-CCCCCCCCCCCCCCccchhhhhhcc---CccccccchHHHHHHHh
Q 013115 340 YAG-PTE--VQWHAKARINAGAN--FYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMAL---GLEKLNILPFRMRTFAR 410 (449)
Q Consensus 340 yAG-PRE--AllHAiiRkNyGcT--HfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~~~---g~~~l~i~p~~vR~~Lr 410 (449)
-.| |.- -.+.. +++.|.-. .||+|-|.. +.. ..| +.+++++.+. -...+.|+-..+|++++
T Consensus 78 ~~~~~syT~dTl~~-l~~~~p~~~~~~iiG~D~l~~l~------~W~---~~~~l~~~~~~vv~~r~~~iSST~IR~~i~ 147 (177)
T 3h05_A 78 QPGQSVTTYALLEK-IQEIYPTADITFVIGPDNFFKFA------KFY---KAEEITERWTVMACPEKVKIRSTDIRNALI 147 (177)
T ss_dssp ----CCCHHHHHHH-HHHHSTTSEEEEEECHHHHHTGG------GST---THHHHHHHSEEEECCCSSCCCHHHHHHHHH
T ss_pred cCCCCcchHHHHHH-HHHHhcCCCeEEEEecchhhhcc------cch---hHHHHHHhCCEEEEcCCCCCcHHHHHHHHH
Confidence 123 321 12232 35556443 489999843 333 233 3567776541 01257888999999999
Q ss_pred CCCCCCCCCCchhHHHHHHH
Q 013115 411 SGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 411 ~G~~pP~~F~rPeV~~iL~~ 430 (449)
+|+.+ ..+.+++|++.+.+
T Consensus 148 ~g~~~-~~lvp~~V~~yI~~ 166 (177)
T 3h05_A 148 EGKDI-STYTTPTVSELLLN 166 (177)
T ss_dssp HTCCC-TTTSCHHHHHHHHC
T ss_pred cCCCh-hHhCCHHHHHHHHH
Confidence 99874 67889999998875
No 26
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=95.84 E-value=0.013 Score=59.13 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=84.7
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcc----ccCCCC--CCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP----LGGFTK--ADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhP----lvG~tK--~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
.|++.=+-+++|+||.+|++.|.+.|.+.+....++-..| +....+ .--.+.+.|++-.+.+ | -+ .
T Consensus 17 ~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~---g---VD--~ 88 (338)
T 2x0k_A 17 SAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF---G---ID--G 88 (338)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT---T---CS--E
T ss_pred eEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc---C---CC--E
Confidence 6777779999999999999988877766542222333333 222211 2245778888866542 1 23 2
Q ss_pred EEecCCCcccCCc-hHHHHHHHHHHhcCCcEeeecCCCC-CCCCCCCCCCCCCCccchhhhhh------ccC--cccccc
Q 013115 331 VSIFPSPMHYAGP-TEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSM------ALG--LEKLNI 400 (449)
Q Consensus 331 L~ilP~~MryAGP-REAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~~------~~g--~~~l~i 400 (449)
+.++|....+|.- -|.....++.+.+++.+++||-|+. |-+ ..++...-+++... .|. ..+..|
T Consensus 89 v~v~~F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~------r~g~~~~L~~~~~~g~~V~~v~~~~~~~~~I 162 (338)
T 2x0k_A 89 VLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGEN------AAGTADSLRQICQSRLTVDVIDLLDDEGVRI 162 (338)
T ss_dssp EEEECTTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGG------GCEEHHHHHHHTTTTSEEEEECCCEETTEEC
T ss_pred EEEccccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCC------CCCCHHHHHHHhcCCeEEEEECcEecCCccc
Confidence 4666766666642 2445555677889999999999975 332 12221111121111 010 123456
Q ss_pred chHHHHHHHhCCC
Q 013115 401 LPFRMRTFARSGE 413 (449)
Q Consensus 401 ~p~~vR~~Lr~G~ 413 (449)
+-..+|++|++|.
T Consensus 163 SST~IR~~L~~G~ 175 (338)
T 2x0k_A 163 SSTTVREFLSEGD 175 (338)
T ss_dssp SHHHHHHHHHTTC
T ss_pred ccchHHHHHhcCc
Confidence 7777999999996
No 27
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=95.79 E-value=0.051 Score=49.30 Aligned_cols=148 Identities=14% Similarity=0.179 Sum_probs=81.0
Q ss_pred ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCC-CC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 013115 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-TK--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (449)
Q Consensus 262 QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~-tK--~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~M 338 (449)
=+-||+|.||..|++.|.+.+ + .+-+++-|.... .| ..-++.+.|++-.+..+++ +|. + .+-....
T Consensus 9 GsFdp~H~GH~~l~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~~--v--~v~~~e~ 77 (189)
T 2h29_A 9 GQFNPIHTAHMIVASEVFHEL---Q--PDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDE--LGF--G--DICDDEI 77 (189)
T ss_dssp ECCTTCCHHHHHHHHHHHHHH---C--CSEEEEEECSBCTTSCCCSSCCCHHHHHHHHHHHHH--HTC--C--EECCHHH
T ss_pred ecCCcccHHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCcCCCCCCHHHHHHHHHHHHcC--CCC--E--EEehHHh
Confidence 389999999999998765432 2 133333343322 23 3457999999999877753 232 2 2222222
Q ss_pred ccCCchHH--HHHHHHHHhcCCc--EeeecCCCCCCCCCCCCCCCCCCccchhhhhhc-------cC-------------
Q 013115 339 HYAGPTEV--QWHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA-------LG------------- 394 (449)
Q Consensus 339 ryAGPREA--llHAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~-------~g------------- 394 (449)
.-.||.-. .+.. +++.|.-+ .||+|-|-..=-. .+|+ .++++..+ ++
T Consensus 78 ~~~~~syt~dtl~~-l~~~~p~~~~~~i~G~D~~~~~~-----~W~~---~~~i~~~~~~~v~~R~~~~~~~~~~i~~~~ 148 (189)
T 2h29_A 78 KRGGQSYTYDTIKA-FKEQHKDSELYFVIGTDQYNQLE-----KWYQ---IEYLKEMVTFVVVNRDKNSQNVENAMIAIQ 148 (189)
T ss_dssp HHCSBCCHHHHHHH-HHHHSTTEEEEEEEEHHHHTTGG-----GSTT---HHHHHHHCEEEEECCSSSCCCCCTTSEEEC
T ss_pred cCCCCCCHHHHHHH-HHHHCCCCcEEEEEecchhhhhc-----cccC---HHHHHhhCcEEEEECCCCccccCCcEEEEc
Confidence 22343211 1222 23344221 6677776421100 1121 12332221 00
Q ss_pred ccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 395 LEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 395 ~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
...+.|+...+|+++++|..+ ..+.+|.|++.|.+
T Consensus 149 ~~~~~ISST~IR~~i~~g~~~-~~lvP~~V~~yI~~ 183 (189)
T 2h29_A 149 IPRVDISSTMIRQRVSEGKSI-QVLVPKSVENYIKG 183 (189)
T ss_dssp CCCBCCCHHHHHHHHHTTCCC-BTTBCHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHcCCCh-hhcCCHHHHHHHHH
Confidence 113567788899999999864 56889999998875
No 28
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=95.44 E-value=0.45 Score=45.31 Aligned_cols=155 Identities=15% Similarity=0.220 Sum_probs=88.5
Q ss_pred ecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCC-CC-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 013115 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-TK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (449)
Q Consensus 262 QTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~-tK-~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~~Mr 339 (449)
=|-||+|.||..+++.|.+.+ + -+.+++-|.... .| ..-++.+.|++-.+..+. + .| . +.+.+....
T Consensus 30 GsFdPiH~GHl~li~~a~~~~---~--ld~v~v~~~~~~p~K~~~~~~~~~R~~ml~~a~~-~-~~-~---v~v~~~e~~ 98 (242)
T 1yum_A 30 GTFDPVHIGHMRSAVEMAEQF---A--LDELRLLPNARPPHRETPQVSAAQRLAMVERAVA-G-VE-R---LTVDPRELQ 98 (242)
T ss_dssp ECCTTCCHHHHHHHHHHHHHH---T--CSEEEEEECCCCGGGSCTTCCHHHHHHHHHHHHT-T-CT-T---EEECCGGGG
T ss_pred eeCcHhhHHHHHHHHHHHHHc---C--CCEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHhc-C-CC-e---EEEeeeeec
Confidence 499999999999998775432 1 244555444431 34 357899999999987774 2 23 2 244555555
Q ss_pred cCCchHHHH-HHHHHHhcCCc---EeeecCCCC-CCCC------------------CCCCCCCCCCccchhhhhhc----
Q 013115 340 YAGPTEVQW-HAKARINAGAN---FYIVGRDPA-GMGH------------------PTEKRDLYDPDHGKKVLSMA---- 392 (449)
Q Consensus 340 yAGPREAll-HAiiRkNyGcT---HfIVGRDHA-GvG~------------------~~~~~~~Yd~~~aq~i~~~~---- 392 (449)
-.||.-.+= =..+++.||.+ .||+|-|-. .+.. +....++. ++.+..+...
T Consensus 99 ~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D~l~~l~~W~~~~~i~~~~~~vv~~R~~~~~~~~--~e~~~~~~~~~~~~ 176 (242)
T 1yum_A 99 RDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPP--ESLRDLLAARSVAD 176 (242)
T ss_dssp SSSSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTGGGSTTGGGSTTTCEEEEEECSSSCCCCC--GGGHHHHHHHBCSC
T ss_pred CCCCCCHHHHHHHHHHHhCCCCcEEEEEehhHhhhhhhhcCHHHHHhhCcEEEEECCCchhhhh--HHHHHHHHHhhccc
Confidence 556543321 12356677665 577776411 0000 00000110 1111111100
Q ss_pred ------c-------CccccccchHHHHHHHhCCCCCCCCCCchhHHHHHHH
Q 013115 393 ------L-------GLEKLNILPFRMRTFARSGENPPDGFMCPGGWKVLVQ 430 (449)
Q Consensus 393 ------~-------g~~~l~i~p~~vR~~Lr~G~~pP~~F~rPeV~~iL~~ 430 (449)
+ ....+.|+-..+|+++++|.. ...+.+++|++.|.+
T Consensus 177 ~~~L~~~~~~i~~~~~~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yI~~ 226 (242)
T 1yum_A 177 PQALKGPGGQITFVWQTPLAVSATQIRALLGAGRS-VRFLVPDAVLNYIEA 226 (242)
T ss_dssp GGGCCSSSCCEEEEECCCCSCCHHHHHHHHHTTCC-CBTTBCHHHHHHHHH
T ss_pred hhhhccCCCeEEEecCCCCcCcHHHHHHHHHcCCC-hhHcCCHHHHHHHHH
Confidence 0 012356777779999999986 567899999999876
No 29
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=94.97 E-value=0.2 Score=46.14 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=86.9
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPS 336 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ilP~ 336 (449)
..+..=|-||+|.||..+++.|. +.. +-+++-|..-..|..-++.+-|++-.+..++ .+|. +.+..+
T Consensus 23 i~i~~GsFDPiH~GHl~ii~~A~----~~~---D~Viv~v~~np~K~~~~s~eeR~~mv~~a~~--~~~~--v~V~~~-- 89 (177)
T 3nbk_A 23 GAVCPGSFDPVTLGHVDIFERAA----AQF---DEVVVAILVNPAKTGMFDLDERIAMVKESTT--HLPN--LRVQVG-- 89 (177)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH----HHS---SEEEEEECCCTTSCCSSCHHHHHHHHHHHCT--TCTT--EEEEEC--
T ss_pred EEEEEEeeCCCCHHHHHHHHHHH----HHC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHhC--CCCC--EEEEec--
Confidence 34444499999999999987654 332 4555556655567788999999999998775 3442 333332
Q ss_pred CcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCC-CCCccch---hhhhhc------cCccccccchHHHH
Q 013115 337 PMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDL-YDPDHGK---KVLSMA------LGLEKLNILPFRMR 406 (449)
Q Consensus 337 ~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~-Yd~~~aq---~i~~~~------~g~~~l~i~p~~vR 406 (449)
.|- + .=..+.+|++.||-|=+-. .|| |.-+-|+ ++ ... +...-..|+-..+|
T Consensus 90 ----e~l---~--vd~~~~~~a~~ivrGlr~~--------~Dfeye~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IR 151 (177)
T 3nbk_A 90 ----HGL---V--VDFVRSCGMTAIVKGLRTG--------TDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAK 151 (177)
T ss_dssp ----CSC---H--HHHHHHTTCCEEEEEECTT--------CCHHHHHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHH
T ss_pred ----Cch---H--HHHHHHcCCCEEEECCCch--------hHHHHHHHHHHHHHhc-CCCceEEEeCCCcccccchHHHH
Confidence 231 1 2233558999888662211 022 2111111 11 110 11111245555699
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHH
Q 013115 407 TFARSGENPPDGFMCPGGWKVLVQYY 432 (449)
Q Consensus 407 ~~Lr~G~~pP~~F~rPeV~~iL~~~y 432 (449)
+.++.|.++ ..|.+|.|++.|.+-+
T Consensus 152 e~~~~ggdv-~~lVP~~V~~~l~~~~ 176 (177)
T 3nbk_A 152 EVAMLGGDV-SELLPEPVNRRLRDRL 176 (177)
T ss_dssp HHHHTTCCC-GGGSCHHHHHHHHHHH
T ss_pred HHHHcCCCh-hHhCCHHHHHHHHHHh
Confidence 999999865 6799999999887654
No 30
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=94.90 E-value=0.15 Score=43.26 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=54.1
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc-----CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-----GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv-----G~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ 332 (449)
++..=+-||+|+||..|++.|. +.+ +-+.+-+.. -..|..-++.+.|++-.++ +. .. +.+++
T Consensus 4 ~~~~G~FDp~H~GH~~li~~a~----~~~---~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~~--~~--d~v~~- 70 (132)
T 2b7l_A 4 VITYGTYDLLHYGHIELLRRAR----EMG---DYLIVALSTDEFNQIKHKKSYYDYEQRKMMLES-IR--YV--DLVIP- 70 (132)
T ss_dssp EEEEECCCSCCHHHHHHHHHHH----HTS---SEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHT-BT--TC--CEEEE-
T ss_pred EEEeeecCcCCHHHHHHHHHHH----HhC---CcEEEEEECCHHHhccCCCCCCCHHHHHHHHHh-cC--CC--CEEEE-
Confidence 3444489999999999987653 443 222221111 0123345889999987763 21 22 22332
Q ss_pred ecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCCCCCCCCCCCCCCccchhhhhhccCccccccchHHHHHHHhCC
Q 013115 333 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRMRTFARSG 412 (449)
Q Consensus 333 ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p~~vR~~Lr~G 412 (449)
.+ .|.+-+-. + +.++|+++|+|.|..|-- ++...+ +. +...+. +..|+-..+|+++++|
T Consensus 71 ----~~---~~~~~~~~--~-~~~~~~~iv~G~D~~~~~------~~L~~~-~~--v~~i~~--~~~iSST~IR~~i~~g 129 (132)
T 2b7l_A 71 ----EK---GWGQKEDD--V-EKFDVDVFVMGHDWEGEF------DFLKDK-CE--VIYLKR--TEGISTTKIKQELYGK 129 (132)
T ss_dssp ----EC---CGGGHHHH--H-HHTTCCEEEECGGGTTTT------GGGTTT-SE--EEECSS--CC--------------
T ss_pred ----CC---ChHHHHHH--H-HHcCCCEEEECCCCcCcH------HHHHhC-CE--EEEECC--CCCcCHHHHHHHHHhc
Confidence 11 12222222 3 568999999999985421 111111 11 111121 3467777899999998
Q ss_pred CC
Q 013115 413 EN 414 (449)
Q Consensus 413 ~~ 414 (449)
..
T Consensus 130 ~~ 131 (132)
T 2b7l_A 130 DA 131 (132)
T ss_dssp --
T ss_pred CC
Confidence 63
No 31
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=93.90 E-value=0.21 Score=48.68 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=51.3
Q ss_pred eEEEeecCCCccchhHHHHHHHHHHHHHcC-CCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 013115 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (449)
Q Consensus 257 ~VvaFQTRNPlHRaHe~L~r~a~~~ale~g-~~~~~lLLhPlvG-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~il 334 (449)
.++..=|-||+|.||..|++.|.+.+-.-+ +...++++.|... ..|..-++.+.|++-.+.++. + .| . +.+.
T Consensus 10 i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~-~-~~--~--~~v~ 83 (279)
T 1kqn_A 10 VLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATK-N-SK--W--VEVD 83 (279)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTT-T-CS--S--EEEC
T ss_pred EEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhc-C-CC--c--EEEe
Confidence 344445899999999999988766443211 0011224445421 335567899999998887774 2 22 2 3566
Q ss_pred CCCcccCCchH
Q 013115 335 PSPMHYAGPTE 345 (449)
Q Consensus 335 P~~MryAGPRE 345 (449)
+....-.|+..
T Consensus 84 ~~E~~~~~~sy 94 (279)
T 1kqn_A 84 TWESLQKEWKE 94 (279)
T ss_dssp CTGGGCSSCCC
T ss_pred ccccccCCCCc
Confidence 77776677743
No 32
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=93.68 E-value=0.25 Score=47.21 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=41.7
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCC-CCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHc
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGY-KNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLED 321 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~-~~~~lLLhPlvG-~tK~gDi~~~vRvr~y~all~~ 321 (449)
++..=|-||+|.||..|++.|.+.+-+.+. ...++++.|... ..|..-++.+.|++-.+..+++
T Consensus 9 ~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~ 74 (252)
T 1nup_A 9 LLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQT 74 (252)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGG
T ss_pred EEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcC
Confidence 344448999999999999888765433210 001134445532 2355678999999999988763
No 33
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=93.40 E-value=0.16 Score=50.57 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=83.1
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc----cCC---CC-CCCCChHHHHHHHHHHHHcCCCCCC
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL----GGF---TK-ADDVPLDVRMEQHSKVLEDGVLDPE 327 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl----vG~---tK-~gDi~~~vRvr~y~all~~~ylP~~ 327 (449)
.+|++.=+-+-+|+||..|++.+.+.|.+.|.+..++-..|. ... .+ .--.+.+-|.+..+.+= -+
T Consensus 21 ~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG------VD 94 (308)
T 3op1_A 21 DSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG------VE 94 (308)
T ss_dssp CEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT------CC
T ss_pred CeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC------CC
Confidence 468888899999999999998877666555433223333341 111 11 12356677877666442 23
Q ss_pred ceEEEecCCCcccC--CchHHHHHHHHHHhcCCcEeeecCCCC---CCCCCCCCCCCCCCccchhhhhhccCccccccch
Q 013115 328 TTIVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA---GMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILP 402 (449)
Q Consensus 328 ~~~L~ilP~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA---GvG~~~~~~~~Yd~~~aq~i~~~~~g~~~l~i~p 402 (449)
.+.++|..-.+| .|. .-..-++ +.+++.+++||-|+. +-|....-+.+ ... .-.+.+... ..+..|+-
T Consensus 95 --~v~~~~F~~~~a~ls~e-~Fv~~ll-~~l~~~~ivvG~DfrFG~r~G~~~~L~~~-~~~-~V~~v~~~~-~~~~~ISS 167 (308)
T 3op1_A 95 --ELYLLDFSSQFASLTAQ-EFFATYI-KAMNAKIIVAGFDYTFGSDKKTAEDLKNY-FDG-EVIIVPPVE-DEKGKISS 167 (308)
T ss_dssp --EEEEECCCHHHHTCCHH-HHHHHHH-HHHTEEEEEEETTCCBTTTTBCSTTHHHH-CSS-EEEEECCCB-CSSCBCCH
T ss_pred --EEEEecCCHHHHcCCHH-HHHHHHH-HHcCCCEEEECcCCCCCCcCCCHHHHHHh-CCC-CEEEeCCEe-cCCceEeH
Confidence 246677665554 454 4444455 589999999999975 22211100011 100 001111111 23567888
Q ss_pred HHHHHHHhCCC
Q 013115 403 FRMRTFARSGE 413 (449)
Q Consensus 403 ~~vR~~Lr~G~ 413 (449)
.++|++|.+|.
T Consensus 168 T~IR~~L~~G~ 178 (308)
T 3op1_A 168 TRIRQAILDGN 178 (308)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 88999999997
No 34
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=92.17 E-value=0.43 Score=48.46 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=91.1
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEE-ccc--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL-HPL--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLL-hPl--vG~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ 332 (449)
+.|++.=.-||+|+||.++++.+.+ .+ ....++ .+. +....+--++.+.|.+..+.. | -| ++.
T Consensus 53 ~~v~~lG~FDg~H~GHq~lI~~a~~----~~--~~~~Vms~~~~~vqrg~~~l~~~~~R~~~~~~~---G---vD--~vi 118 (357)
T 3gmi_A 53 KIVCDFTEYNPLHKGHKYALEKGKE----HG--IFISVLPGPLERSGRGIPYFLNRYIRAEMAIRA---G---AD--IVV 118 (357)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHHT----SS--EEEEEECCTTSBCTTSSBCSSCHHHHHHHHHHH---T---CS--EEE
T ss_pred CEEEEEEecCccCHHHHHHHHHHHH----cC--CeEEEEcCchHHhcCCCCcCCCHHHHHHHHHHC---C---CC--EEE
Confidence 5788888999999999999986643 21 122222 223 433344556778888766543 2 23 357
Q ss_pred ecCCCcccCCchHHHHHH-HHHHhcCCcEeeecCCCCCCCCC------CCCC-----------CCCCC---------ccc
Q 013115 333 IFPSPMHYAGPTEVQWHA-KARINAGANFYIVGRDPAGMGHP------TEKR-----------DLYDP---------DHG 385 (449)
Q Consensus 333 ilP~~MryAGPREAllHA-iiRkNyGcTHfIVGRDHAGvG~~------~~~~-----------~~Yd~---------~~a 385 (449)
.+|..+. -.|.|-+-.| .+-..+||.+++||- +....-. ..+. .=|.. +..
T Consensus 119 elpF~~~-~s~~~Fv~~~v~ll~~l~~~~iv~G~-~~~~~~~~~~~~i~~~~~~~~kp~~~~g~ey~~~~~~~l~~pn~i 196 (357)
T 3gmi_A 119 EGPPMGI-MGSGQYMRCLIKMFYSLGAEIIPRGY-IPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYV 196 (357)
T ss_dssp ECCCGGG-SCHHHHHHHHHHHHHHHTCCEEEEEE-CCCHHHHHHHHHHHTTCCEEEETTEEEETTTCCEEESCCCGGGHH
T ss_pred EcCchhh-CCHHHHHHHHHHHHHHcCCCEEEECC-CCchhHHHHHHHHhcccccccccchhccCcHHHHHHHhccCCChH
Confidence 7786533 5666543332 233589999999998 4422100 0000 00111 000
Q ss_pred -----hhhhhhc-----cCcccc------ccchHHHHHHHhCCC-CCCCCCCchhHHHHHHHHHH
Q 013115 386 -----KKVLSMA-----LGLEKL------NILPFRMRTFARSGE-NPPDGFMCPGGWKVLVQYYE 433 (449)
Q Consensus 386 -----q~i~~~~-----~g~~~l------~i~p~~vR~~Lr~G~-~pP~~F~rPeV~~iL~~~y~ 433 (449)
+.|...- +++.-+ -++...+|+++.+|. .-=..|.++.+++.|.+.++
T Consensus 197 l~~y~kai~~~~~~~~~~~i~~~~i~R~~~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~~~ 261 (357)
T 3gmi_A 197 IASMSQMIYKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYD 261 (357)
T ss_dssp HHHHHHHHHHHHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCCCCeEEEecCCCcccHHHHHHHHHcCChhHHHhcCChHHHHHHHHHHh
Confidence 0011111 111111 144556999999996 33456899999999998775
No 35
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=86.89 E-value=2.1 Score=42.12 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=74.5
Q ss_pred EEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc---CCC-CCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 013115 259 FAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFT-KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (449)
Q Consensus 259 vaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv---G~t-K~gDi~~~vRvr~y~all~~~ylP~~~~~L~il 334 (449)
++.=+-+.+|+||..|++.|.+.|.+.+....++-..|.. ... ..--.+.+.|++..++ +- .+.++
T Consensus 3 vtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~------lg----~~~v~ 72 (293)
T 1mrz_A 3 VSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSR------YA----RTVVL 72 (293)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTT------TS----CEEEE
T ss_pred EEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHh------CC----CEEEE
Confidence 3344789999999999999887776655332233334422 211 1225677888874432 21 23445
Q ss_pred CCCcccC--CchHHHHHHHHHHhcCCcEeeecCCCC-CCCCCCCCCCCCCCccchhhhh----hccC--ccccccchHHH
Q 013115 335 PSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLS----MALG--LEKLNILPFRM 405 (449)
Q Consensus 335 P~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Yd~~~aq~i~~----~~~g--~~~l~i~p~~v 405 (449)
|. ..+| .| |.....++ +++.+++||-|+. |-+ .-++...-++ +. ..|. ..+..|+-..+
T Consensus 73 ~F-~~~a~ls~-~~Fi~~il---l~~~~iVvG~Df~fG~~------~~g~~~~L~~-~G~~V~~v~~~~~~~~~iSST~I 140 (293)
T 1mrz_A 73 DF-FRIKDLTP-EGFVERYL---SGVSAVVVGRDFRFGKN------ASGNASFLRK-KGVEVYEIEDVVVQGKRVSSSLI 140 (293)
T ss_dssp CH-HHHTTCCH-HHHHHHHC---TTCCEEEEETTCCBSGG------GCBCHHHHHH-TTCEEEEECCCEETTEECCHHHH
T ss_pred Eh-HHhhcCCH-HHHHHHHh---cCCCEEEECCCCCCCCC------CCCCHHHHHh-CCCEEEEECCEEeCCccccHhHH
Confidence 54 3333 33 44445544 9999999999985 221 0111111111 00 0111 12356777789
Q ss_pred HHHHhCCC
Q 013115 406 RTFARSGE 413 (449)
Q Consensus 406 R~~Lr~G~ 413 (449)
|++|++|.
T Consensus 141 R~~L~~G~ 148 (293)
T 1mrz_A 141 RNLVQEGR 148 (293)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCc
Confidence 99999996
No 36
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=86.74 E-value=4.5 Score=33.80 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=49.4
Q ss_pred EEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 013115 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-----FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (449)
Q Consensus 258 VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG-----~tK~gDi~~~vRvr~y~all~~~ylP~~~~~L~ 332 (449)
++..=+-||+|+||..+++.|. +.+ +-+.+-+... ..+..-++.+-|++-.++ +. .. +.++ .
T Consensus 4 ~~~~G~FDp~H~GH~~li~~a~----~~~---d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~~--~~--d~v~-~ 70 (129)
T 1coz_A 4 VITYGTFDLLHWGHIKLLERAK----QLG---DYLVVAISTDEFNLQKQKKAYHSYEHRKLILET-IR--YV--DEVI-P 70 (129)
T ss_dssp EEEEECCCSCCHHHHHHHHHHH----TTS---SEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTT-BT--TC--CEEE-E
T ss_pred EEEEEeCCCCCHHHHHHHHHHH----HhC---CCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHh-cC--CC--CEEE-e
Confidence 3333489999999999987653 443 2232212110 123457888999886663 21 22 2222 2
Q ss_pred ecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCC
Q 013115 333 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (449)
Q Consensus 333 ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (449)
. + .+.+-+ . .+ +.++++++++|-|..
T Consensus 71 ~----~---~~~~~~-~-~l-~~~~~~~iv~G~D~~ 96 (129)
T 1coz_A 71 E----K---NWEQKK-Q-DI-IDHNIDVFVMGDDWE 96 (129)
T ss_dssp E----C---CSTTHH-H-HH-HHTTCSEEEEEGGGT
T ss_pred C----C---CHHHHH-H-HH-HHhCCcEEEECCCCC
Confidence 1 1 122222 2 24 457999999999974
No 37
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.82 E-value=2.6 Score=41.59 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=36.3
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCC------C----CCCCChHHHHHHHHHHHH
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT------K----ADDVPLDVRMEQHSKVLE 320 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~t------K----~gDi~~~vRvr~y~all~ 320 (449)
|-||+|.||..+++.| .+. ++-+.+-|..-.. | ..-++.+.|++-.+..+.
T Consensus 10 tFdP~h~GHl~~~~~a----~~~---~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~ 70 (365)
T 1lw7_A 10 KFYPVHTGHINMIYEA----FSK---VDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFK 70 (365)
T ss_dssp CCSSCCHHHHHHHHHH----HTT---CSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTS
T ss_pred eeCCCCHHHHHHHHHH----HHH---CCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhh
Confidence 9999999999998755 344 3555554554332 0 224999999999988875
No 38
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=85.12 E-value=1.2 Score=38.69 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=51.3
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEE----ccccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLL----hPlvG-~tK~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
+.+++.=+-+|+|+||..|++.| .+.+ +-+.+ .|.+- ..+.--.+.+-|++..+.+ ++ -+.++
T Consensus 3 ~~v~~~G~FD~vH~GH~~li~~a----~~~~---~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~---~~--vd~v~ 70 (143)
T 3glv_A 3 IRVMATGVFDILHLGHIHYLKES----KKLG---DELVVVVARDSTARNNGKIPIFDENSRLALISEL---KV--VDRAI 70 (143)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHH----HTTS---SEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTB---TT--CSEEE
T ss_pred eEEEEEeecCCCCHHHHHHHHHH----HHhC---CCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhc---CC--CCEEE
Confidence 45666669999999999998765 3443 22222 11110 1234457889998855532 12 23232
Q ss_pred EEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCC
Q 013115 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDP 367 (449)
Q Consensus 331 L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDH 367 (449)
.. .|.+-+ . ++ +.+++.++++|-|+
T Consensus 71 -~~--------~~~~f~-~-~~-~~l~~~~iv~G~d~ 95 (143)
T 3glv_A 71 -LG--------HEGDMM-K-TV-IEVKPDIITLGYDQ 95 (143)
T ss_dssp -EC--------CTTCHH-H-HH-HHHCCSEEEECTTC
T ss_pred -Ec--------CchhHH-H-HH-HhcCCCEEEECCCC
Confidence 21 233322 3 33 57999999999985
No 39
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=80.09 E-value=1.5 Score=38.81 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=35.6
Q ss_pred cCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCC--C--CCCCChHHHHHHHHHHH-Hc
Q 013115 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT--K--ADDVPLDVRMEQHSKVL-ED 321 (449)
Q Consensus 263 TRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~t--K--~gDi~~~vRvr~y~all-~~ 321 (449)
|-||+|.||..+.+.|.+. +. +-+++-|..... | ..-++.+.|++-.+.++ ++
T Consensus 8 tFDPiH~GHl~l~~~a~~~----~~--d~viv~v~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~ 65 (148)
T 3do8_A 8 TFEPLHEGHKKLIDVAIKL----GG--RDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRK 65 (148)
T ss_dssp CCSSCCHHHHHHHHHHHHH----HT--TCEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHh----CC--CEEEEEECCCccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999998766442 21 233332332221 2 45689999999999888 63
No 40
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=66.82 E-value=3.9 Score=39.97 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHhCC-CCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccc
Q 013115 240 RLSPQQLRKEFDNRQ-ADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL 297 (449)
Q Consensus 240 r~tP~E~R~~f~~~g-w~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPl 297 (449)
-.|++|+|+...+.. -++|.-+=|=.-+|.||..|++.|.+ +.......+|+||+
T Consensus 7 ~~ti~~lr~~~~~~~~g~~ig~VPTMGaLH~GHlsLv~~Ar~---~~d~vVVSIFVNP~ 62 (264)
T 3n8h_A 7 ADNIKQFHSIRNSLIKQQKIGFVPTMGALHNGHISLIKKAKS---ENDVVIVSIFVNPT 62 (264)
T ss_dssp ECSHHHHHHHHHTSCTTSCEEEEEECSSCCHHHHHHHHHHHH---HCSEEEEEECCCGG
T ss_pred EcCHHHHHHHHHHHhCCCcEEEECCCcchhHHHHHHHHHHHH---hCCEEEEEEccCcc
Confidence 458999999987531 13455555999999999999987644 22111234666776
No 41
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=66.57 E-value=3.9 Score=40.21 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=35.5
Q ss_pred CCHHHHHHHHH---hCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEcccc
Q 013115 241 LSPQQLRKEFD---NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG 298 (449)
Q Consensus 241 ~tP~E~R~~f~---~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlv 298 (449)
.|+.|+|+..+ +.| ++|+..=|-+-+|+||..|++.|.+.+- . ....++.||.-
T Consensus 5 ~~~~el~~~~~~~r~~g-~~V~~vgtfdgLH~GH~sLI~~A~~~ad-~--vVVSffvnP~q 61 (280)
T 2ejc_A 5 ETIEEMKKFSEEMREKK-KTIGFVPTMGYLHEGHLSLVRRARAEND-V--VVVSIFVNPTQ 61 (280)
T ss_dssp CCHHHHHHHHHHHHHTT-CCEEEEEECSCCCHHHHHHHHHHHHHSS-E--EEEEECCCGGG
T ss_pred eCHHHHHHHHHHHHhcC-CEEEEEcCCccccHHHHHHHHHHHHhCC-E--EEEEEeCChHH
Confidence 57888887543 333 4566667999999999999987754221 1 01235558863
No 42
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=63.98 E-value=5.5 Score=40.07 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=55.7
Q ss_pred CeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEE----ccccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCceE
Q 013115 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGGFTK-ADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (449)
Q Consensus 256 ~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLL----hPlvG~tK-~gDi~~~vRvr~y~all~~~ylP~~~~~ 330 (449)
++|++.=+-+|+|.||..++++| .+++ +-|.+ +|.+-..| +--++.+-|++..+++ . +. +.++
T Consensus 8 ~~v~~~G~FD~lH~GH~~lL~~A----~~l~---d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l-~--~V--D~Vv 75 (341)
T 3elb_A 8 VRVWCDGCYDMVHYGHSNQLRQA----RAMG---DYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAI-K--WV--DEVV 75 (341)
T ss_dssp CEEEEEECCCSCCHHHHHHHHHH----HHTS---SEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHB-T--TC--CEEE
T ss_pred eEEEEEeeCCCCCHHHHHHHHHH----HHhC---CcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHc-C--CC--CEEE
Confidence 46777779999999999999765 3454 32222 22211112 3457899999988764 1 22 2122
Q ss_pred EEec-CCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCC
Q 013115 331 VSIF-PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (449)
Q Consensus 331 L~il-P~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (449)
.+ |. .-|.|-+ +.++|..++.|-|+..
T Consensus 76 --~f~~~----~~~~efi------~~~~~d~vV~G~D~~~ 103 (341)
T 3elb_A 76 --PAAPY----VTTLETL------DKYNCDFCVHGNDITL 103 (341)
T ss_dssp --ETCCS----SCCHHHH------HHTTCSEEEECSCCCB
T ss_pred --ecCCC----CCHHHHH------HHhCCCEEEECCCCCC
Confidence 22 21 2344442 6999999999999873
No 43
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=63.60 E-value=3.1 Score=41.11 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHH
Q 013115 240 RLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDV 310 (449)
Q Consensus 240 r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~v 310 (449)
-.|++|+|+...+ | ++|.-.=|=.=+|+||..|++.|.+.+ ......+++||.- ....+|++...
T Consensus 8 ~~ti~~lr~~~~~-g-~~ig~VPTMG~LH~GH~sLi~~A~~~~---d~vVvSifvnP~q-f~~~ed~~~yp 72 (283)
T 3uk2_A 8 ISSIQELRDQLRG-Q-NRTAFVPTMGNLHEGHLSLMRLARQHG---DPVVASIFVNRLQ-FGPNEDFDKYP 72 (283)
T ss_dssp ECCHHHHHHHTTT-C-SSCEEEEECSSCCHHHHHHHHHHHTTC---SSEEEEECCCGGG-SCTTSCTTTSC
T ss_pred EcCHHHHHHHHHc-C-CeEEEECCCCcccHHHHHHHHHHHHhC---CEEEEEEcCCHHH-cCCcccccccC
Confidence 4589999999876 3 445555599999999999998764321 1112357889985 45556654433
No 44
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=60.29 E-value=5.4 Score=39.90 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHh--CCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 013115 239 YRLSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (449)
Q Consensus 239 ~r~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vR 311 (449)
.-.|+.|+|+...+ +.-++|.-+=|=.=+|.||..|++.|.+. .......+|+||+ -...++|++..-|
T Consensus 24 ii~t~~elr~~~~~~r~~g~~IgfVPTMG~LH~GHlsLi~~A~~~---~d~vVVSIFVNP~-QF~~~EDl~~YPR 94 (314)
T 3inn_A 24 IIHTIEELRQALAPARQQGKKIGFVPTMGYLHKGHLELVRRARVE---NDVTLVSIFVNPL-QFGANEDLGRYPR 94 (314)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHHHH---CSEEEEEECCCGG-GSCTTSSTTTCCC
T ss_pred EEcCHHHHHHHHHHHHHcCCeEEEEcCCCccCHHHHHHHHHHHHh---CCEEEEEECCChh-hcCCCccccccCC
Confidence 34589999988752 22245555568888999999999876542 1111235778887 3345566654433
No 45
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=54.34 E-value=7.2 Score=38.54 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHh--CCCCeEEEeecCCCccchhHHHHHHHH
Q 013115 240 RLSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTR 279 (449)
Q Consensus 240 r~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~L~r~a~ 279 (449)
-.|++|+|+...+ +.-++|.-+=|=.-+|.||..|++.|.
T Consensus 7 ~~t~~elr~~~~~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar 48 (287)
T 3q12_A 7 IETLPLLRQQIRRWRQEGKRIALVPTMGNLHEGHMTLVDEAK 48 (287)
T ss_dssp ECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHcCCeEEEEcCCCcccHHHHHHHHHHH
Confidence 3589999988752 222455555577789999999998663
No 46
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=54.04 E-value=7.1 Score=34.40 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCeEEEeCCCCCEEEEEEeccccccCHHHHHHH--hhCCCCCCCcchhhhcccCCcEEEeeeEEEe
Q 013115 163 STTNVALLGPTGDLIGILRSIEIYKHNKEERIAR--TWGTTAAGLPYVEEVITPAGNWLVGGDLEVL 227 (449)
Q Consensus 163 ~G~~vaL~d~eG~~vAiL~V~evy~~Dk~~ea~~--VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l 227 (449)
+|.++-|+|.+|++++..+.++. +-.|-+ ++-+++++||-.+ ..|+|.|.|++.+-
T Consensus 54 ~~~r~~l~d~eG~Il~~~~~~~~-----~~ralrnFi~~sd~~~~P~qk----~ygr~~i~GPf~i~ 111 (138)
T 3v67_A 54 PRPRVFFSDYNGNVLTTDKRSNF-----QLRAMQNFVTSIEDYNKPKQR----LYGRYMIAGPVPIV 111 (138)
T ss_dssp CSCEEEEECTTSCEECCCCSCHH-----HHHHHHHHHHHCSCTTSCEEE----EETTEEEEEEEEEE
T ss_pred CCccEEEEcCCCCEecCCcccch-----hHHHHHHHHHhccCccCchhh----hhCcEEEeCCEEEE
Confidence 56789999999999997765431 123333 4467788899876 47999999998763
No 47
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=53.18 E-value=7.3 Score=38.34 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHH---hCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 013115 240 RLSPQQLRKEFD---NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (449)
Q Consensus 240 r~tP~E~R~~f~---~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~ 307 (449)
-.|+.|+|+... +.| ++|.-.=|=.=+|+||..|++.|.+.+- . ....++.||.- ...++|++
T Consensus 5 ~~~~~~l~~~~~~~r~~g-~~I~fVpTmG~lH~GH~~LI~~a~~~a~-~--vVvsffvnP~q-f~~~ed~~ 70 (283)
T 3ag6_A 5 ITTVKEMQHIVKAAKRSG-TTIGFIPTMGALHDGHLTMVRESVSTND-I--TIVSVFVNPLQ-FGPNEDFD 70 (283)
T ss_dssp ECCHHHHHHHHHHHHHTT-CCEEEEEECSSCCHHHHHHHHHHHTTSS-E--EEEEECCCGGG-CCTTSSTT
T ss_pred EcCHHHHHHHHHHHHhcC-CcEEEEECCccccHHHHHHHHHHHHhCC-E--EEEEEeCChhh-cCCccccc
Confidence 357889987543 333 2332222322399999999987643211 0 12346778863 22345543
No 48
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=50.31 E-value=8.7 Score=37.64 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 013115 240 RLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (449)
Q Consensus 240 r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~ 307 (449)
..++.|+|+...+.| |-..=|=.-+|+||..|++.|.+.+ .. ....++.||.- ..+++|++
T Consensus 4 ~~~~~~l~~~~~~~g---i~~VpTmG~lH~GH~~Li~~A~~~a-~~--vVvsff~nP~q-f~~~ed~~ 64 (276)
T 1v8f_A 4 VSTVAELRAALPREG---VGFVPTMGYLHRGHLALVERARREN-PF--VVVSVFVNPLQ-FGPGEDYH 64 (276)
T ss_dssp ECSHHHHHHHCCSSC---EEEEEECSSCCHHHHHHHHHHHHHC-SE--EEEEECCCGGG-CCTTSSTT
T ss_pred EecHHHHHHHHhhcC---ceEEEeCCCccHHHHHHHHHHHHhC-CE--EEEEEECCHHH-hCCCcccC
Confidence 357889998875455 2222233339999999998775532 11 12346778864 23445443
No 49
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=39.77 E-value=9.8 Score=37.55 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHh--CCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 013115 240 RLSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (449)
Q Consensus 240 r~tP~E~R~~f~~--~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLLhPlvG~tK~gDi~~~vR 311 (449)
-.|++|+|+...+ +.-++|.-+=|=.-+|.||..|++.|.+ . +. ....+|+||+ -....+|+...-|
T Consensus 7 ~~ti~elr~~~~~~~~~g~~Ig~VPTMGaLH~GHlsLv~~Ar~-~-d~--VVVSIFVNP~-QF~~~EDl~~YPR 75 (285)
T 3mxt_A 7 ITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHAKT-Q-DK--VIVSIFVNPM-QFGPNEDFSSYPR 75 (285)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHTT-S-SE--EEEEECCCGG-GCCTTSCTTTSCC
T ss_pred EcCHHHHHHHHHHHHHcCCeEEEEcCCCcccHHHHHHHHHHHh-C-CE--EEEEeccCcc-ccCCchhhhcCCC
Confidence 3589999988752 1123455555888999999999986632 1 11 1235677777 3445566654433
No 50
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=32.25 E-value=49 Score=33.10 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=56.3
Q ss_pred CCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCC--eEEE----ccccCCCC---CCCCChHHHHHHHHHHHHcCCC
Q 013115 254 QADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNP--ILLL----HPLGGFTK---ADDVPLDVRMEQHSKVLEDGVL 324 (449)
Q Consensus 254 gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~--~lLL----hPlvG~tK---~gDi~~~vRvr~y~all~~~yl 324 (449)
|-+.|+.-=|-+|+|.||..++++| .+++ + -|.+ ++.+-..| .--++.+-|+.+.+++ . |.
T Consensus 197 ~~~iv~~~GsFD~~h~GHl~~L~rA----~~l~---D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~-~--~v 266 (341)
T 3elb_A 197 GETVIYVAGAFDLFHIGHVDFLEKV----HRLA---ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLAC-R--YV 266 (341)
T ss_dssp TCEEEEEEECCTTCCHHHHHHHHHH----HTTS---SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTB-T--TC
T ss_pred CCEEEEEecccCCCCHHHHHHHHHH----HHhC---CCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHc-C--CC
Confidence 3344555569999999999998765 4565 4 2332 21111113 2468999999998864 3 44
Q ss_pred CCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCCCCC
Q 013115 325 DPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 370 (449)
Q Consensus 325 P~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGv 370 (449)
+ + +++ .-|+. ... =+.+.+||+-++-|.|+...
T Consensus 267 d-~-V~v-~~~~~-----l~~-----~~~~~~~~~~iv~G~d~~~~ 299 (341)
T 3elb_A 267 S-E-VVI-GAPYA-----VTA-----ELLSHFKVDLVCHGKTEIIP 299 (341)
T ss_dssp C-E-EEE-EECSS-----CCH-----HHHHHTTCSEEEECSSCCCC
T ss_pred C-C-EEE-CCCCc-----chH-----HHHHhcCCcEEEECCCCccc
Confidence 3 2 332 22221 111 12356799999999987654
No 51
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=30.43 E-value=89 Score=26.68 Aligned_cols=58 Identities=22% Similarity=0.219 Sum_probs=37.9
Q ss_pred ceeEEEecChHHHhhcCCC-----------CeEEEeCCCCCEEEEEEeccccc-cCHHHHHHHhhCCCCC
Q 013115 146 SLPIVLAIDDETKERIGST-----------TNVALLGPTGDLIGILRSIEIYK-HNKEERIARTWGTTAA 203 (449)
Q Consensus 146 piPItL~V~~e~a~~l~~G-----------~~vaL~d~eG~~vAiL~V~evy~-~Dk~~ea~~VfGT~d~ 203 (449)
++|+..|...+.++.+..- -...|+|++|++++.....+... .+-++..+.+..|.-.
T Consensus 100 ~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~~ 169 (175)
T 1xvq_A 100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSGS 169 (175)
T ss_dssp CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC--
T ss_pred CceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcCc
Confidence 4588888776666665432 25788899999999987555543 3556656666655543
No 52
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=28.10 E-value=38 Score=32.42 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHhCCCCeEEEeecCCCccchhHHHHHHHHHHHHHcCCCCCeEEE----ccccCCCC-CCCCChHHHHH
Q 013115 239 YRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGGFTK-ADDVPLDVRME 313 (449)
Q Consensus 239 ~r~tP~E~R~~f~~~gw~~VvaFQTRNPlHRaHe~L~r~a~~~ale~g~~~~~lLL----hPlvG~tK-~gDi~~~vRvr 313 (449)
.+.|-.+.+..-...+-.+|+..=|-+|+|.||..++++| .++. .++.|.+ .+.+-..| .--++.+-|++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~V~~~GtFD~~H~GHl~iL~rA----k~lf-~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e 134 (236)
T 3hl4_A 60 VRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQA----KNLF-PNTYLIVGVCSDELTHNFKGFTVMNENERYD 134 (236)
T ss_dssp CCCCHHHHHHCCCTTSCEEEEEEECCTTCCHHHHHHHHHH----HTSS-SSEEEEEEECCHHHHHHHTCCCSSCHHHHHH
T ss_pred hhccHHHHhcCCCCCCCeEEEEeccCCCCCHHHHHHHHHH----HHhc-CCCeEEEEEcccHHHhhcCCCCCCCHHHHHH
Confidence 4678888776655445556787789999999999998765 3441 1133333 22111112 33789999999
Q ss_pred HHHHHHHcCCCCCCceEEEecCCCcccCCchHHHHHHHHHHhcCCcEeeecCCC
Q 013115 314 QHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDP 367 (449)
Q Consensus 314 ~y~all~~~ylP~~~~~L~ilP~~MryAGPREAllHAiiRkNyGcTHfIVGRDH 367 (449)
..+++ . +. +.++ ..-|+. ... =.-+.+||+.++.|-|.
T Consensus 135 ~v~~~-k--~V--D~Vv-v~~p~~-----l~~-----d~i~~~~~d~Vv~GDd~ 172 (236)
T 3hl4_A 135 AVQHC-R--YV--DEVV-RNAPWT-----LTP-----EFLAEHRIDFVAHDDIP 172 (236)
T ss_dssp HHHTB-T--TC--SEEE-SSCCSS-----CCH-----HHHHHTTCCEEEEESSC
T ss_pred HHHHh-C--CC--CeEE-ECCcCc-----CcH-----HHHHHcCCCEEEECCcc
Confidence 88854 2 33 2222 112222 111 12247899988888663
No 53
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=24.92 E-value=1.2e+02 Score=24.38 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=33.1
Q ss_pred ceeEEEecChHHHhhcCCC--CeEEEeCCCCCEEEEEEeccccc-cCHHHHHHHhhCCCCCCCcc
Q 013115 146 SLPIVLAIDDETKERIGST--TNVALLGPTGDLIGILRSIEIYK-HNKEERIARTWGTTAAGLPY 207 (449)
Q Consensus 146 piPItL~V~~e~a~~l~~G--~~vaL~d~eG~~vAiL~V~evy~-~Dk~~ea~~VfGT~d~~HPg 207 (449)
++|+..+...+.++.+... -.+.|+|.+|+++....-..-+. ..-++..++.-+..+..||+
T Consensus 86 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~~~~~ 150 (152)
T 3gl3_A 86 EFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEGHHHH 150 (152)
T ss_dssp CSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--------
T ss_pred CCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccccccc
Confidence 4478888777776665432 35778899999988765332221 12334455556666666654
No 54
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=22.71 E-value=1.7e+02 Score=30.02 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhCCCCeEEEeecCCC-ccchhHHHHHHHHHHHHHcC
Q 013115 242 SPQQLRKEFDNRQADAIFAFQLRNP-IHNGHALLMNDTRRRLLEMG 286 (449)
Q Consensus 242 tP~E~R~~f~~~gw~~VvaFQTRNP-lHRaHe~L~r~a~~~ale~g 286 (449)
...++++.++.+..+-..|||.-.+ +|=||.--++ .++.+.+.|
T Consensus 18 ~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~-~l~~lQ~~G 62 (419)
T 2ts1_A 18 DEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATIL-TMRRFQQAG 62 (419)
T ss_dssp CHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHH-HHHHHHHTT
T ss_pred CHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHH-HHHHHHHCC
Confidence 4678999998877788899998778 9999966443 334566666
No 55
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=22.49 E-value=1.6e+02 Score=30.15 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHhCCCCeEEEeecCCC-ccchhHHHHHHHHHHHHHcC
Q 013115 241 LSPQQLRKEFDNRQADAIFAFQLRNP-IHNGHALLMNDTRRRLLEMG 286 (449)
Q Consensus 241 ~tP~E~R~~f~~~gw~~VvaFQTRNP-lHRaHe~L~r~a~~~ale~g 286 (449)
....++++.++.+..+-..|||.-.+ +|=||.--++ .++.+.+.|
T Consensus 19 ~~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~-~~~~lQ~~G 64 (420)
T 1jil_A 19 TDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFL-TLRRFQEHG 64 (420)
T ss_dssp SCHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHH-HHHHHHHTT
T ss_pred CCHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHH-HHHHHHHCC
Confidence 34688999998887788899998778 9999966443 334566666
No 56
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=21.10 E-value=59 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=23.4
Q ss_pred HhhcCCCCeEEEeCCCCCEEEEEEecccccc
Q 013115 158 KERIGSTTNVALLGPTGDLIGILRSIEIYKH 188 (449)
Q Consensus 158 a~~l~~G~~vaL~d~eG~~vAiL~V~evy~~ 188 (449)
++.+.....+.++|.+|+++|+++..++.+.
T Consensus 109 ~~~~~~~~~lpVvd~~g~~~Giit~~dil~~ 139 (156)
T 3ctu_A 109 LHKLVDESFLPVVDAEGIFQGIITRKSILKA 139 (156)
T ss_dssp HHHTTTSSEEEEECTTSBEEEEEETTHHHHH
T ss_pred HHHHHHcCeEEEEcCCCeEEEEEEHHHHHHH
Confidence 3444444578888878999999999998743
No 57
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=21.08 E-value=3.2e+02 Score=26.68 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=33.0
Q ss_pred CHHHHHHHHHhCCCCeEEEeecCCC-ccchhHHHHHHHHHHHHHcC
Q 013115 242 SPQQLRKEFDNRQADAIFAFQLRNP-IHNGHALLMNDTRRRLLEMG 286 (449)
Q Consensus 242 tP~E~R~~f~~~gw~~VvaFQTRNP-lHRaHe~L~r~a~~~ale~g 286 (449)
...++++.++.+..+-..|||.-.+ +|=||.--++ -+..+.+.|
T Consensus 21 ~~~~l~~~l~~~~~~vy~G~~PTg~slHlGh~l~l~-~~~~lQ~~g 65 (322)
T 2yxn_A 21 DEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLL-CLKRFQQAG 65 (322)
T ss_dssp SHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHH-HHHHHHHTT
T ss_pred CHHHHHHHHcCCCCEEEEeecCCCCcccHHHHHHHH-HHHHHHHcC
Confidence 3778999998777788999998788 9999955433 234555666
No 58
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=20.83 E-value=52 Score=28.02 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=22.7
Q ss_pred HhhcCCCCeEEEeCCCCCEEEEEEeccccc
Q 013115 158 KERIGSTTNVALLGPTGDLIGILRSIEIYK 187 (449)
Q Consensus 158 a~~l~~G~~vaL~d~eG~~vAiL~V~evy~ 187 (449)
++.+.....+..+|.+|+++|+++..|+.+
T Consensus 109 ~~~m~~~~~lpVVd~~g~l~GiiT~~Dil~ 138 (156)
T 3k6e_A 109 LHKLVDESFLPVVDAEGIFQGIITRKSILK 138 (156)
T ss_dssp HHHTTTSSEEEEECTTSBEEEEEEHHHHHH
T ss_pred HHHHHHcCCeEEEecCCEEEEEEEHHHHHH
Confidence 344455556667888999999999999873
Done!