Your job contains 1 sequence.
>013117
MKAAQTPHKKEVPCVFGRPPQLPITKIIRLSAALLARHRRCSTPTAALSLPPRVCSLRPE
SLSCRLSTIYSWHFTGKTKLCSVDAAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTM
FVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKD
PRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNE
FDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSL
CAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVA
AIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLN
QAPVDGSSGSSYGTSGSCSGSSKAGTLDF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013117
(449 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0278783 - symbol:elp4 "RNA polymerase II e... 182 2.5e-24 2
UNIPROTKB|G5E569 - symbol:ELP4 "Elongator complex protein... 181 2.8e-19 2
UNIPROTKB|Q2TBH6 - symbol:ELP4 "Elongator complex protein... 181 2.8e-19 2
RGD|1566052 - symbol:Elp4 "elongator acetyltransferase co... 173 9.3e-19 2
MGI|MGI:1925016 - symbol:Elp4 "elongation protein 4 homol... 172 2.0e-18 2
UNIPROTKB|F1SGP7 - symbol:ELP4 "Uncharacterized protein" ... 178 4.4e-18 2
UNIPROTKB|F1PZ43 - symbol:ELP4 "Uncharacterized protein" ... 179 5.7e-18 2
UNIPROTKB|I3LQ04 - symbol:ELP4 "Uncharacterized protein" ... 178 1.1e-17 2
RGD|1592018 - symbol:LOC365839 "similar to elongation pro... 171 1.9e-17 2
UNIPROTKB|F1NF63 - symbol:ELP4 "Uncharacterized protein" ... 167 9.9e-17 2
UNIPROTKB|Q96EB1 - symbol:ELP4 "Elongator complex protein... 177 1.0e-16 2
UNIPROTKB|B4E3W0 - symbol:ELP4 "cDNA FLJ61586, highly sim... 177 5.6e-16 2
UNIPROTKB|G5E9D4 - symbol:ELP4 "Elongator complex protein... 177 8.6e-16 2
FB|FBgn0031711 - symbol:CG6907 species:7227 "Drosophila m... 150 1.8e-14 2
UNIPROTKB|J9NUM5 - symbol:ELP4 "Uncharacterized protein" ... 130 4.7e-13 2
UNIPROTKB|E9PPJ9 - symbol:ELP4 "Elongator complex protein... 177 6.7e-13 1
ZFIN|ZDB-GENE-050417-114 - symbol:elp4 "elongation protei... 185 1.3e-11 1
UNIPROTKB|Q5XG58 - symbol:elp4 "Elongator complex protein... 183 2.3e-11 1
WB|WBGene00016128 - symbol:elpc-4 species:6239 "Caenorhab... 167 8.9e-10 1
UNIPROTKB|Q18195 - symbol:elpc-4 "Putative elongator comp... 167 8.9e-10 1
ASPGD|ASPL0000056386 - symbol:AN0191 species:162425 "Emer... 166 2.8e-09 2
UNIPROTKB|Q60ZM2 - symbol:elpc-4 "Putative elongator comp... 157 1.2e-08 1
UNIPROTKB|G4MSN9 - symbol:MGG_07081 "Elongator complex pr... 154 4.3e-08 1
POMBASE|SPCC11E10.06c - symbol:elp4 "elongator complex su... 141 9.5e-07 1
CGD|CAL0001223 - symbol:orf19.3759 species:5476 "Candida ... 122 0.00018 1
>DICTYBASE|DDB_G0278783 [details] [associations]
symbol:elp4 "RNA polymerase II elongator complex
subunit" species:44689 "Dictyostelium discoideum" [GO:0033588
"Elongator holoenzyme complex" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISS] [GO:0008607 "phosphorylase kinase regulator
activity" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR008728 Pfam:PF05625 dictyBase:DDB_G0278783
GO:GO:0005737 GenomeReviews:CM000152_GR GO:GO:0008607 GO:GO:0006357
GO:GO:0006351 EMBL:AAFI02000024 GO:GO:0008023 GO:GO:0033588
eggNOG:NOG238377 KO:K11375 OMA:EDPANIL RefSeq:XP_641960.1
EnsemblProtists:DDB0216343 GeneID:8621692 KEGG:ddi:DDB_G0278783
ProtClustDB:CLSZ2729100 Uniprot:Q54XS0
Length = 439
Score = 182 (69.1 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 58/229 (25%), Positives = 108/229 (47%)
Query: 210 LRIAWQYKKY----MGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCV----- 260
L+IAW+Y++Y + + Q + Q +C+ +DF + + + ++ +
Sbjct: 166 LKIAWRYQQYVSNELSKQQQQQSASTIMNQTFCHSYDFTRKMNVQSMNPELIHTLSHDAQ 225
Query: 261 ----GIQHSKNL-AALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEML 315
G +NL +Q + + N + + R+ IQS +P SN + ++
Sbjct: 226 SQAEGTSPYRNLFLEIQNLVYKYNKEAAMNPDQTRVL-RLCIQSFSSPLW--SNDEEGVI 282
Query: 316 SFIKSLKGMVRSSNAVVVITFPPXXXXXXXTKRWQHMADTLLSVAAIPDEDKELAKLLSG 375
F+ +LKG++RSS A VI+ P K+ H+ DT++S+ + E + +
Sbjct: 283 EFLHALKGLLRSSVATCVISVPTYIYSGAFVKKIAHLCDTVVSINSFSGLGGETPEQFAE 342
Query: 376 YQDMVGLLNVHKVARLNT-QVPLILEATTFSIKLQKRRFLVLECLNQAP 423
Y +GL N+ K+ARLNT + + TF K+ KRR + +E ++ P
Sbjct: 343 Y---LGLFNIRKIARLNTLSLSFHPDMLTFVFKM-KRRKMCIETIHLPP 387
Score = 167 (63.8 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 38/141 (26%), Positives = 76/141 (53%)
Query: 65 RLSTIYSWHFTGKTKLCSVDAAMATTKPRLSSFSRNLSAVSSSQTP-GVKCG-PNGTMFV 122
R+ T ++ G K + +++ T +S + + ++ + P G K N +
Sbjct: 5 RVPTTFTRKVAGGVKTTTTGSSLPTNN---TSTTTTTTTTAAKKLPNGCKISIKNSNLLT 61
Query: 123 SSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASP-SKDP 181
S+G+ DLD I+GGG P+GS++M+ ED + ++M LL+ F+++G++ Q + ++S DP
Sbjct: 62 STGLTDLDDIIGGGIPIGSILMIEEDINSSYYMFLLKYFLAEGVLQQQGVFFSSLIGIDP 121
Query: 182 RGFLGTLPSPASLKHDKSRDR 202
L LP+ + + + D+
Sbjct: 122 FEILNKLPARITKEEEIEADK 142
>UNIPROTKB|G5E569 [details] [associations]
symbol:ELP4 "Elongator complex protein 4" species:9913 "Bos
taurus" [GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0008607 "phosphorylase kinase regulator activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004402
"histone acetyltransferase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR008728 Pfam:PF05625 GO:GO:0005737
GO:GO:0008607 GO:GO:0006357 GO:GO:0016591 GO:GO:0004402
GO:GO:0008023 GO:GO:0033588 UniGene:Bt.89060
GeneTree:ENSGT00390000001443 OMA:EDPANIL EMBL:DAAA02041221
EMBL:DAAA02041222 EMBL:DAAA02041223 EMBL:DAAA02041224
EMBL:DAAA02041225 Ensembl:ENSBTAT00000005990 Uniprot:G5E569
Length = 423
Score = 181 (68.8 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 47/134 (35%), Positives = 75/134 (55%)
Query: 92 PRLSSFSRNLSA-VSSSQT-PGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDA 149
PR S S VS + T P V+ NG + VS+G+ LD++LGGG +G+++++ ED
Sbjct: 34 PRASGADSGCSRLVSIAGTRPSVR---NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDK 90
Query: 150 EAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA---SLKHDKSRD---RE 203
+ LL + F+++G+V G LL AS +DP L LP+P S K + D +
Sbjct: 91 YNIYSPLLFKYFLAEGIVSGHALLVASAKEDPADILQKLPAPLIDDSYKKECDEDVCSHK 150
Query: 204 SEQEKGLRIAWQYK 217
E + ++IAW+Y+
Sbjct: 151 MEPDIKMKIAWRYQ 164
Score = 119 (46.9 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 37/138 (26%), Positives = 70/138 (50%)
Query: 294 RIAIQSLCAPQ------C-EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQ+L +P C E+ + + F+ L+G++R+S + +IT P
Sbjct: 253 RIGIQNLGSPLWGDDICCTENCDTSHSLTKFLYILRGLLRTSLSACIITMPTHLIQNKAV 312
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R +++DT++ + + +KE L Y+D GL+++ ++ RLN + I + +
Sbjct: 313 IARVTNLSDTVVGLESFIGSEKETNPL---YKDYHGLIHIRQIPRLNNLIYDISDVKDLA 369
Query: 406 IKLQKRRFLVLECLNQAP 423
KL+K+ F + E L+ P
Sbjct: 370 FKLKKKLFTI-ERLHLPP 386
>UNIPROTKB|Q2TBH6 [details] [associations]
symbol:ELP4 "Elongator complex protein 4" species:9913 "Bos
taurus" [GO:0033588 "Elongator holoenzyme complex" evidence=ISS]
[GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS]
[GO:0008023 "transcription elongation factor complex" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR008728 Pfam:PF05625 GO:GO:0005737 GO:GO:0008607
GO:GO:0006357 GO:GO:0006351 GO:GO:0008023 GO:GO:0033588
EMBL:BC110206 IPI:IPI00729189 RefSeq:NP_001033773.1
UniGene:Bt.89060 ProteinModelPortal:Q2TBH6 STRING:Q2TBH6
PRIDE:Q2TBH6 GeneID:614139 KEGG:bta:614139 CTD:26610
eggNOG:NOG238377 HOGENOM:HOG000007516 HOVERGEN:HBG104285
InParanoid:Q2TBH6 KO:K11375 OrthoDB:EOG4WSW9G NextBio:20898960
Uniprot:Q2TBH6
Length = 423
Score = 181 (68.8 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 47/134 (35%), Positives = 75/134 (55%)
Query: 92 PRLSSFSRNLSA-VSSSQT-PGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDA 149
PR S S VS + T P V+ NG + VS+G+ LD++LGGG +G+++++ ED
Sbjct: 34 PRASGADSGCSRLVSIAGTRPSVR---NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDK 90
Query: 150 EAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA---SLKHDKSRD---RE 203
+ LL + F+++G+V G LL AS +DP L LP+P S K + D +
Sbjct: 91 YNIYSPLLFKYFLAEGIVSGHALLVASAKEDPADILQKLPAPLIDDSYKKECDEDVCSHK 150
Query: 204 SEQEKGLRIAWQYK 217
E + ++IAW+Y+
Sbjct: 151 MEPDIKMKIAWRYQ 164
Score = 119 (46.9 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 37/138 (26%), Positives = 70/138 (50%)
Query: 294 RIAIQSLCAPQ------C-EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQ+L +P C E+ + + F+ L+G++R+S + +IT P
Sbjct: 253 RIGIQNLGSPLWGDDICCTENCDTSHSLTKFLYILRGLLRTSLSACIITMPTHLIQNKAV 312
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R +++DT++ + + +KE L Y+D GL+++ ++ RLN + I + +
Sbjct: 313 IARVTNLSDTVVGLESFIGSEKETNPL---YKDYHGLIHIRQIPRLNNLIYDISDVKDLA 369
Query: 406 IKLQKRRFLVLECLNQAP 423
KL+K+ F + E L+ P
Sbjct: 370 FKLKKKLFTI-ERLHLPP 386
>RGD|1566052 [details] [associations]
symbol:Elp4 "elongator acetyltransferase complex subunit 4"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0008023 "transcription
elongation factor complex" evidence=ISO] [GO:0008607 "phosphorylase
kinase regulator activity" evidence=ISO] [GO:0016573 "histone
acetylation" evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase
II, holoenzyme" evidence=ISO] [GO:0033588 "Elongator holoenzyme
complex" evidence=ISO] [GO:0004402 "histone acetyltransferase
activity" evidence=ISO] InterPro:IPR008728 Pfam:PF05625 RGD:1566052
GO:GO:0006357 EMBL:CH473949 GO:GO:0033588 eggNOG:NOG238377
HOGENOM:HOG000007516 HOVERGEN:HBG104285 KO:K11375 OrthoDB:EOG4WSW9G
EMBL:BC158667 IPI:IPI00764919 RefSeq:NP_001108519.1
UniGene:Rn.199104 STRING:B0BN35 GeneID:687694 KEGG:rno:687694
CTD:687694 NextBio:734727 Genevestigator:B0BN35 Uniprot:B0BN35
Length = 422
Score = 173 (66.0 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 38/107 (35%), Positives = 64/107 (59%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD++LGGG +G+L+++ ED + LL + F+++G+V+G LL AS
Sbjct: 57 NGQLLVSTGLPALDQLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVAS 116
Query: 177 PSKDPRGFLGTLPSPASLKHDKSR--DRES----EQEKGLRIAWQYK 217
++P L LP+P + K D S E + ++IAW+Y+
Sbjct: 117 AKENPANILQELPAPLLDDNGKKELEDVHSAKPPEADANMKIAWRYQ 163
Score = 123 (48.4 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 39/138 (28%), Positives = 70/138 (50%)
Query: 294 RIAIQSLCAPQ------C-EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXX- 345
RI IQ+L +P C E+S+ + F+ L+G++RSS + +IT P
Sbjct: 252 RIGIQNLGSPLWGDDICCKENSDNHHRLTKFLYILRGLLRSSLSACIITMPAQLVQNKAI 311
Query: 346 TKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
T R ++++DT++ + + ++E L Y+D GL+++ K+ RLN + +
Sbjct: 312 TTRVRNLSDTVVGLESFIGSERETNPL---YKDYHGLIHIRKIPRLNNLTCDESDVKDLA 368
Query: 406 IKLQKRRFLVLECLNQAP 423
KL KR+ +E L+ P
Sbjct: 369 FKL-KRKLFTIERLHLPP 385
>MGI|MGI:1925016 [details] [associations]
symbol:Elp4 "elongation protein 4 homolog (S. cerevisiae)"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008023 "transcription elongation factor complex" evidence=ISO]
[GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO]
[GO:0016573 "histone acetylation" evidence=ISO] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISO]
[GO:0033588 "Elongator holoenzyme complex" evidence=ISO]
InterPro:IPR008728 Pfam:PF05625 MGI:MGI:1925016 GO:GO:0005737
GO:GO:0008607 GO:GO:0006357 GO:GO:0006351 GO:GO:0016591
GO:GO:0004402 GO:GO:0008023 EMBL:AL590380 GO:GO:0033588 CTD:26610
eggNOG:NOG238377 HOGENOM:HOG000007516 HOVERGEN:HBG104285 KO:K11375
OrthoDB:EOG4WSW9G GeneTree:ENSGT00390000001443 OMA:EDPANIL
EMBL:AJ276004 EMBL:AK020742 EMBL:AK034040 EMBL:AK034529
EMBL:AK037104 EMBL:AK039447 EMBL:AK039758 EMBL:AK079069
EMBL:AK168964 EMBL:AL512589 IPI:IPI00308066 RefSeq:NP_076365.2
UniGene:Mm.33870 ProteinModelPortal:Q9ER73 STRING:Q9ER73
PaxDb:Q9ER73 PRIDE:Q9ER73 DNASU:77766 Ensembl:ENSMUST00000122965
GeneID:77766 KEGG:mmu:77766 UCSC:uc008lld.1 InParanoid:Q9ER73
NextBio:347507 Bgee:Q9ER73 CleanEx:MM_ELP4 Genevestigator:Q9ER73
Uniprot:Q9ER73
Length = 422
Score = 172 (65.6 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 38/107 (35%), Positives = 63/107 (58%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD++LGGG +G+L+++ ED + LL + FM++G+++G LL AS
Sbjct: 57 NGQLLVSTGLPALDQLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFMAEGIINGHTLLVAS 116
Query: 177 PSKDPRGFLGTLPSPA----SLKH--DKSRDRESEQEKGLRIAWQYK 217
++P L LP+P S K D + E ++IAW+Y+
Sbjct: 117 AKENPAKILQELPAPLLDDNSKKELEDVHSAKTPEPNVNMKIAWRYQ 163
Score = 121 (47.7 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 294 RIAIQSLCAPQ-----CEHSNMD--WEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXX- 345
RI IQ+L +P C N D + F+ L+G++RSS + +IT P
Sbjct: 252 RIGIQNLGSPLWGDDICCKENCDNNHRLTKFLYILRGLLRSSLSACIITMPAHLVQNKSI 311
Query: 346 TKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
T R ++++DT++ + + ++E L Y+D GL+++ K+ RLN + +
Sbjct: 312 TTRVRNLSDTVVGLESFIGSERETNPL---YKDYHGLIHIRKIPRLNNLTCDESDVKDLA 368
Query: 406 IKLQKRRFLVLECLNQAP 423
KL KR+ +E L+ P
Sbjct: 369 FKL-KRKLFTIERLHLPP 385
>UNIPROTKB|F1SGP7 [details] [associations]
symbol:ELP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0008607 "phosphorylase kinase regulator activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004402
"histone acetyltransferase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR008728 Pfam:PF05625 GO:GO:0005737
GO:GO:0008607 GO:GO:0006357 GO:GO:0016591 GO:GO:0004402
GO:GO:0008023 GO:GO:0033588 CTD:26610 KO:K11375
GeneTree:ENSGT00390000001443 OMA:EDPANIL EMBL:CU468610
EMBL:CU462945 EMBL:CU463938 RefSeq:XP_003122940.3
Ensembl:ENSSSCT00000014547 GeneID:100514702 KEGG:ssc:100514702
Uniprot:F1SGP7
Length = 424
Score = 178 (67.7 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 43/130 (33%), Positives = 77/130 (59%)
Query: 95 SSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHH 154
S +SR L +++ ++ P V+ NG + VS+G+ LD++LGGG +G+++++ ED +
Sbjct: 41 SGYSR-LVSIAGTR-PSVR---NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYS 95
Query: 155 MLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA---SLKHDKSRD----RESEQE 207
LL + F+++G+V+G LL AS +DP L LP+P + K + D + E
Sbjct: 96 PLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVHNHKTPESN 155
Query: 208 KGLRIAWQYK 217
++IAW+Y+
Sbjct: 156 IKMKIAWRYQ 165
Score = 111 (44.1 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 36/138 (26%), Positives = 67/138 (48%)
Query: 294 RIAIQSLCAPQ-----CEHSNMD--WEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQSL +P C N D + F+ L+G++R+S + +IT P
Sbjct: 254 RIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHLIQNKAI 313
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R +++D ++ + + ++E L Y+D GL+++ ++ RLN + + + +
Sbjct: 314 IARVTNLSDIVVGLESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLICDVSDVKDLA 370
Query: 406 IKLQKRRFLVLECLNQAP 423
KL KR+ +E L+ P
Sbjct: 371 FKL-KRKLFTIERLHLPP 387
>UNIPROTKB|F1PZ43 [details] [associations]
symbol:ELP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033588 "Elongator holoenzyme complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR008728
Pfam:PF05625 GO:GO:0006357 GO:GO:0033588
GeneTree:ENSGT00390000001443 OMA:EDPANIL EMBL:AAEX03011409
Ensembl:ENSCAFT00000012029 Uniprot:F1PZ43
Length = 479
Score = 179 (68.1 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 46/136 (33%), Positives = 75/136 (55%)
Query: 104 VSSSQT-PGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFM 162
VS + T P V+ NG + VS+G+ LD++LGGG +G+++++ ED + LL + F+
Sbjct: 51 VSIAGTRPSVR---NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSSLLFKYFL 107
Query: 163 SQGLVHGQPLLYASPSKDPRGFLGTLPSPA---SLKHDKSRD----RESEQEKGLRIAWQ 215
++G+++G LL AS +DP L LP+P + K D D + E ++IAW+
Sbjct: 108 AEGVINGHTLLVASAKEDPADILQELPAPLLDDNCKKDFDEDVGNHKTPESNIKMKIAWR 167
Query: 216 YKKYMGENQPNFDSHR 231
Y+ QP S R
Sbjct: 168 YQLLPKMEQPGPVSSR 183
Score = 111 (44.1 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 26/116 (22%), Positives = 60/116 (51%)
Query: 301 CAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT-KRWQHMADTLLSV 359
C C++S+ + F+ L+G++R+S + +IT P R +++DT++ +
Sbjct: 275 CTENCDNSH---SLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTNLSDTVVGL 331
Query: 360 AAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLV 415
+ ++E L Y+D GL+++ ++ RLN + + + + KL+++ F +
Sbjct: 332 ESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLIYDVSDVKDLAFKLKRKLFTI 384
>UNIPROTKB|I3LQ04 [details] [associations]
symbol:ELP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR008728 Pfam:PF05625
GO:GO:0006357 GO:GO:0033588 GeneTree:ENSGT00390000001443
EMBL:CU468610 EMBL:CU462945 EMBL:CU463938
Ensembl:ENSSSCT00000031770 Uniprot:I3LQ04
Length = 403
Score = 178 (67.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 43/130 (33%), Positives = 77/130 (59%)
Query: 95 SSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHH 154
S +SR L +++ ++ P V+ NG + VS+G+ LD++LGGG +G+++++ ED +
Sbjct: 41 SGYSR-LVSIAGTR-PSVR---NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYS 95
Query: 155 MLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA---SLKHDKSRD----RESEQE 207
LL + F+++G+V+G LL AS +DP L LP+P + K + D + E
Sbjct: 96 PLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVHNHKTPESN 155
Query: 208 KGLRIAWQYK 217
++IAW+Y+
Sbjct: 156 IKMKIAWRYQ 165
Score = 106 (42.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 32/130 (24%), Positives = 64/130 (49%)
Query: 294 RIAIQSLCAPQ-----CEHSNMD--WEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQSL +P C N D + F+ L+G++R+S + +IT P
Sbjct: 255 RIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHLIQNKAI 314
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R +++D ++ + + ++E L Y+D GL+++ ++ RLN + + + +
Sbjct: 315 IARVTNLSDIVVGLESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLICDVSDVKDLA 371
Query: 406 IKLQKRRFLV 415
KL+++ F +
Sbjct: 372 FKLKRKLFTI 381
>RGD|1592018 [details] [associations]
symbol:LOC365839 "similar to elongation protein 4 homolog"
species:10116 "Rattus norvegicus" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
InterPro:IPR008728 Pfam:PF05625 RGD:1592018 GO:GO:0006357
GO:GO:0033588 GeneTree:ENSGT00390000001443 IPI:IPI00368269
Ensembl:ENSRNOT00000021604 Uniprot:F1M7K9
Length = 408
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 39/109 (35%), Positives = 65/109 (59%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD++LGGG +G+L+++ ED + LL + F+++G+++G LL AS
Sbjct: 43 NGQLLVSTGLPALDQLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFLAEGIINGHTLLVAS 102
Query: 177 PSKDPRGFLGTLPSPASLKHDKSR----DRES----EQEKGLRIAWQYK 217
++P L LP+P L D R D S E + ++IAW+Y+
Sbjct: 103 AKENPANVLQELPAP--LLDDNGRKELEDVHSTKPPEADANMKIAWRYQ 149
Score = 112 (44.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 38/138 (27%), Positives = 71/138 (51%)
Query: 294 RIAIQSLCAPQ------CEHSNMDWEMLS-FIKSLKGMVRSSNAVVVITFPPXXXXXXX- 345
RI IQ+L +P C+ ++ ++ L+ F+ L+G++RSS + +IT P
Sbjct: 239 RIGIQNLGSPLWGDDICCKENSDNYHRLTKFLYILRGLLRSSLSACIITMPAQLVQNKAI 298
Query: 346 TKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
T ++++DT++ + + E +E L Y+D GL+++ K+ RLN + +
Sbjct: 299 TTHVRNLSDTVVGLESFIGE-RETNPL---YKDYHGLIHIRKIPRLNNLTCDESDVKDLA 354
Query: 406 IKLQKRRFLVLECLNQAP 423
KL KR+ +E L+ P
Sbjct: 355 FKL-KRKLFTIERLHLPP 371
>UNIPROTKB|F1NF63 [details] [associations]
symbol:ELP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0004402 "histone
acetyltransferase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008607 "phosphorylase kinase regulator activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA] [GO:0033588 "Elongator holoenzyme
complex" evidence=IEA] InterPro:IPR008728 Pfam:PF05625
GO:GO:0005737 GO:GO:0008607 GO:GO:0006357 GO:GO:0016591
GO:GO:0004402 GO:GO:0008023 GO:GO:0033588
GeneTree:ENSGT00390000001443 OMA:EDPANIL EMBL:AC140946
IPI:IPI00591551 Ensembl:ENSGALT00000019813 Uniprot:F1NF63
Length = 394
Score = 167 (63.8 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 48/169 (28%), Positives = 88/169 (52%)
Query: 85 AAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVM 144
AA +T R S SR L+AV ++ P ++ +G + +S G+ LD +LGGG +G+L++
Sbjct: 2 AATTSTSFRRSGGSR-LAAVPGTR-PALR---HGQLLLSCGVPSLDCVLGGGLAVGTLLL 56
Query: 145 VMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA---SLKHDK--S 199
+ ED + LL + F+++G+V G L AS P + LP+P + K ++ +
Sbjct: 57 IEEDKYGVYSSLLFKYFLAEGVVCGHDLFVASAQDPPANIIKELPAPLLDDNFKTERVEA 116
Query: 200 RDRESEQ-EKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPL 247
+SE + ++IAW+Y +N P ++ + + +D K +
Sbjct: 117 TAAKSEDCQDSMQIAWRY-----QNAPKVETSPTTSIKFGHYYDVSKKM 160
Score = 109 (43.4 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 28/111 (25%), Positives = 60/111 (54%)
Query: 314 MLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT-KRWQHMADTLLSVAAIPDEDKELAKL 372
+ F+ L+G++R S + +IT P +R +++D ++ + + ++E L
Sbjct: 251 LTKFLYVLRGLLRKSLSACIITMPSHLIENKAIMERVTNLSDMVVGLESFIGSERETNPL 310
Query: 373 LSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAP 423
Y+D GLL+VH++ RLN+ + + + + +L++++F V E L+ P
Sbjct: 311 ---YKDYHGLLHVHQIPRLNSLICDVSDTKDLAFRLKRKQFTV-ERLHLPP 357
>UNIPROTKB|Q96EB1 [details] [associations]
symbol:ELP4 "Elongator complex protein 4" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA;TAS] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008023 "transcription elongation factor complex"
evidence=IDA] [GO:0033588 "Elongator holoenzyme complex"
evidence=IDA] [GO:0004402 "histone acetyltransferase activity"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IC] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=IDA] [GO:0016573 "histone
acetylation" evidence=IDA] InterPro:IPR008728 Pfam:PF05625
GO:GO:0005737 GO:GO:0016573 GO:GO:0008607 GO:GO:0006357
GO:GO:0006368 GO:GO:0016591 GO:GO:0008023 GO:GO:0033588 CTD:26610
eggNOG:NOG238377 HOGENOM:HOG000007516 HOVERGEN:HBG104285 KO:K11375
OrthoDB:EOG4WSW9G EMBL:AL136677 EMBL:AK000505 EMBL:Z83307
EMBL:BC012514 EMBL:AJ276005 IPI:IPI00061376 IPI:IPI00784483
RefSeq:NP_061913.3 UniGene:Hs.175534 ProteinModelPortal:Q96EB1
IntAct:Q96EB1 STRING:Q96EB1 PhosphoSite:Q96EB1 DMDM:145558903
PaxDb:Q96EB1 PRIDE:Q96EB1 DNASU:26610 Ensembl:ENST00000350638
GeneID:26610 KEGG:hsa:26610 UCSC:uc001mtb.3 GeneCards:GC11P031487
H-InvDB:HIX0009527 HGNC:HGNC:1171 MIM:606985 neXtProt:NX_Q96EB1
PharmGKB:PA27764 ChiTaRS:ELP4 GenomeRNAi:26610 NextBio:48984
ArrayExpress:Q96EB1 Bgee:Q96EB1 CleanEx:HS_ELP4
Genevestigator:Q96EB1 Uniprot:Q96EB1
Length = 424
Score = 177 (67.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 82 SVDAAMAT-TKPRLSSFSRNLSAVSSSQTPGVK----CG--P---NGTMFVSSGIADLDK 131
S +A+AT +K ++SF R S + G + G P NG + VS+G+ LD+
Sbjct: 13 STGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPALDQ 72
Query: 132 ILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSP 191
+LGGG +G+++++ ED + LL + F+++G+V+G LL AS +DP L LP+P
Sbjct: 73 LLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAP 132
Query: 192 A---SLKHDKSRD----RESEQEKGLRIAWQYK 217
K + D + E ++IAW+Y+
Sbjct: 133 LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQ 165
Score = 99 (39.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 34/138 (24%), Positives = 65/138 (47%)
Query: 294 RIAIQSLCAPQ------C-EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQ+L +P C E+ + F+ L+G++R+S + +IT P
Sbjct: 254 RIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAI 313
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R ++D ++ + + ++E L Y+D GL+++ ++ RLN + + +
Sbjct: 314 IARVTTLSDVVVGLESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLICDESDVKDLA 370
Query: 406 IKLQKRRFLVLECLNQAP 423
KL KR+ +E L+ P
Sbjct: 371 FKL-KRKLFTIERLHLPP 387
>UNIPROTKB|B4E3W0 [details] [associations]
symbol:ELP4 "cDNA FLJ61586, highly similar to Homo sapiens
elongation protein 4 homolog (ELP4), mRNA" species:9606 "Homo
sapiens" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] InterPro:IPR008728 Pfam:PF05625
GO:GO:0006357 EMBL:AC108456 GO:GO:0033588 HOGENOM:HOG000007516
HOVERGEN:HBG104285 EMBL:Z83307 UniGene:Hs.175534 HGNC:HGNC:1171
ChiTaRS:ELP4 EMBL:AC131571 EMBL:Z83001 EMBL:Z83306 EMBL:AK304885
IPI:IPI00909309 STRING:B4E3W0 Ensembl:ENST00000379163
UCSC:uc010rdz.2 Uniprot:B4E3W0
Length = 476
Score = 177 (67.4 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 82 SVDAAMAT-TKPRLSSFSRNLSAVSSSQTPGVK----CG--P---NGTMFVSSGIADLDK 131
S +A+AT +K ++SF R S + G + G P NG + VS+G+ LD+
Sbjct: 13 STGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPALDQ 72
Query: 132 ILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSP 191
+LGGG +G+++++ ED + LL + F+++G+V+G LL AS +DP L LP+P
Sbjct: 73 LLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAP 132
Query: 192 A---SLKHDKSRD----RESEQEKGLRIAWQYK 217
K + D + E ++IAW+Y+
Sbjct: 133 LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQ 165
Score = 94 (38.1 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 30/130 (23%), Positives = 62/130 (47%)
Query: 294 RIAIQSLCAPQ------C-EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQ+L +P C E+ + F+ L+G++R+S + +IT P
Sbjct: 255 RIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAI 314
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R ++D ++ + + ++E L Y+D GL+++ ++ RLN + + +
Sbjct: 315 IARVTTLSDVVVGLESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLICDESDVKDLA 371
Query: 406 IKLQKRRFLV 415
KL+++ F +
Sbjct: 372 FKLKRKLFTI 381
>UNIPROTKB|G5E9D4 [details] [associations]
symbol:ELP4 "Elongator complex protein 4" species:9606
"Homo sapiens" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] InterPro:IPR008728 Pfam:PF05625
EMBL:CH471064 GO:GO:0006357 EMBL:AC108456 GO:GO:0033588 OMA:EDPANIL
EMBL:Z83307 UniGene:Hs.175534 HGNC:HGNC:1171 ChiTaRS:ELP4
EMBL:AC131571 EMBL:Z83001 EMBL:Z83306 ProteinModelPortal:G5E9D4
PRIDE:G5E9D4 Ensembl:ENST00000395934 PhylomeDB:G5E9D4
ArrayExpress:G5E9D4 Bgee:G5E9D4 Uniprot:G5E9D4
Length = 535
Score = 177 (67.4 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 82 SVDAAMAT-TKPRLSSFSRNLSAVSSSQTPGVK----CG--P---NGTMFVSSGIADLDK 131
S +A+AT +K ++SF R S + G + G P NG + VS+G+ LD+
Sbjct: 13 STGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPALDQ 72
Query: 132 ILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSP 191
+LGGG +G+++++ ED + LL + F+++G+V+G LL AS +DP L LP+P
Sbjct: 73 LLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAP 132
Query: 192 A---SLKHDKSRD----RESEQEKGLRIAWQYK 217
K + D + E ++IAW+Y+
Sbjct: 133 LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQ 165
Score = 94 (38.1 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 30/130 (23%), Positives = 62/130 (47%)
Query: 294 RIAIQSLCAPQ------C-EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT 346
RI IQ+L +P C E+ + F+ L+G++R+S + +IT P
Sbjct: 254 RIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAI 313
Query: 347 -KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFS 405
R ++D ++ + + ++E L Y+D GL+++ ++ RLN + + +
Sbjct: 314 IARVTTLSDVVVGLESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLICDESDVKDLA 370
Query: 406 IKLQKRRFLV 415
KL+++ F +
Sbjct: 371 FKLKRKLFTI 380
>FB|FBgn0031711 [details] [associations]
symbol:CG6907 species:7227 "Drosophila melanogaster"
[GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008023 "transcription elongation factor complex" evidence=ISS]
[GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS]
InterPro:IPR008728 Pfam:PF05625 GO:GO:0005737 EMBL:AE014134
GO:GO:0008607 GO:GO:0006357 GO:GO:0006351 GO:GO:0008023
GO:GO:0033588 eggNOG:NOG238377 KO:K11375
GeneTree:ENSGT00390000001443 OMA:EDPANIL EMBL:AY075211
RefSeq:NP_608932.1 UniGene:Dm.7695 ProteinModelPortal:Q9VMQ7
SMR:Q9VMQ7 IntAct:Q9VMQ7 MINT:MINT-748387 PaxDb:Q9VMQ7 PRIDE:Q9VMQ7
EnsemblMetazoa:FBtr0079096 GeneID:33775 KEGG:dme:Dmel_CG6907
UCSC:CG6907-RA FlyBase:FBgn0031711 InParanoid:Q9VMQ7
OrthoDB:EOG4MCVFP PhylomeDB:Q9VMQ7 GenomeRNAi:33775 NextBio:785188
Bgee:Q9VMQ7 Uniprot:Q9VMQ7
Length = 437
Score = 150 (57.9 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 111 GVKCGPNGTMFV-SSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHG 169
G + P+ + SSG LD ++GGG P+GS+ ++ ED H +L + F+++G++
Sbjct: 15 GTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLIEEDRFMTHAKVLAKYFLAEGVISK 74
Query: 170 QPLLYASPSKDPRGFLGTLPSPASLKHDKSRDR-----ESEQEKGLRIAWQY 216
Q + S P L LP P + + + ++ E GLRIAW+Y
Sbjct: 75 QEIFLGSLDDIPAEMLRRLPRPLTDQESMEQSEVQALGDAGAENGLRIAWRY 126
Score = 108 (43.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 27/125 (21%), Positives = 59/125 (47%)
Query: 294 RIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXX---XXXTKRWQ 350
R+ + SL +P + +++ F+ L VR+ N+V +IT P + +
Sbjct: 281 RVCLTSLGSPLWYDEHFGEDLIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIR 340
Query: 351 HMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQK 410
+ D + + + ++E Y GLL++HK++ +NT + E + KL++
Sbjct: 341 QLVDYAIELESFAGSERETHPAFKEYS---GLLHLHKMSAINTLAVHMPETPDLAFKLRR 397
Query: 411 RRFLV 415
++F++
Sbjct: 398 KKFII 402
>UNIPROTKB|J9NUM5 [details] [associations]
symbol:ELP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033588 "Elongator holoenzyme complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR008728
Pfam:PF05625 InterPro:IPR001623 Pfam:PF00226 GO:GO:0006457
GO:GO:0006357 Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271
SUPFAM:SSF46565 PROSITE:PS50076 GO:GO:0033588
GeneTree:ENSGT00390000001443 EMBL:AAEX03011409
Ensembl:ENSCAFT00000047952 Uniprot:J9NUM5
Length = 432
Score = 130 (50.8 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 134 GGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPA- 192
GGG +G+++++ ED + LL + F+++G+++G LL AS +DP L LP+P
Sbjct: 84 GGGLAVGTVLLIEEDKYNIYSSLLFKYFLAEGVINGHTLLVASAKEDPADILQELPAPLL 143
Query: 193 --SLKHDKSRD----RESEQEKGLRIAWQYK 217
+ K D D + E ++IAW+Y+
Sbjct: 144 DDNCKKDFDEDVGNHKTPESNIKMKIAWRYQ 174
Score = 116 (45.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 30/124 (24%), Positives = 63/124 (50%)
Query: 301 CAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXXT-KRWQHMADTLLSV 359
C C++S+ + F+ L+G++R+S + +IT P R +++DT++ +
Sbjct: 279 CTENCDNSH---SLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTNLSDTVVGL 335
Query: 360 AAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECL 419
+ ++E L Y+D GL+++ ++ RLN + + + + KL KR+ +E L
Sbjct: 336 ESFIGSERETNPL---YKDYHGLIHIRQIPRLNNLIYDVSDVKDLAFKL-KRKLFTIERL 391
Query: 420 NQAP 423
+ P
Sbjct: 392 HLPP 395
>UNIPROTKB|E9PPJ9 [details] [associations]
symbol:ELP4 "Elongator complex protein 4" species:9606
"Homo sapiens" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] InterPro:IPR008728 Pfam:PF05625
GO:GO:0006357 EMBL:AC108456 GO:GO:0033588 EMBL:Z83307
HGNC:HGNC:1171 ChiTaRS:ELP4 EMBL:AC131571 EMBL:Z83001 EMBL:Z83306
IPI:IPI00980985 ProteinModelPortal:E9PPJ9 SMR:E9PPJ9
Ensembl:ENST00000474374 ArrayExpress:E9PPJ9 Bgee:E9PPJ9
Uniprot:E9PPJ9
Length = 185
Score = 177 (67.4 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 82 SVDAAMAT-TKPRLSSFSRNLSAVSSSQTPGVK----CG--P---NGTMFVSSGIADLDK 131
S +A+AT +K ++SF R S + G + G P NG + VS+G+ LD+
Sbjct: 13 STGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPALDQ 72
Query: 132 ILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSP 191
+LGGG +G+++++ ED + LL + F+++G+V+G LL AS +DP L LP+P
Sbjct: 73 LLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAP 132
Query: 192 A---SLKHDKSRD----RESEQEKGLRIAWQYK 217
K + D + E ++IAW+Y+
Sbjct: 133 LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQ 165
>ZFIN|ZDB-GENE-050417-114 [details] [associations]
symbol:elp4 "elongation protein 4 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISS]
[GO:0008023 "transcription elongation factor complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008607 "phosphorylase
kinase regulator activity" evidence=ISS] [GO:0045859 "regulation of
protein kinase activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR008728 Pfam:PF05625
ZFIN:ZDB-GENE-050417-114 GO:GO:0005737 GO:GO:0008607 GO:GO:0006357
GO:GO:0006351 GO:GO:0008023 GO:GO:0033588 CTD:26610
eggNOG:NOG238377 HOGENOM:HOG000007516 HOVERGEN:HBG104285 KO:K11375
OrthoDB:EOG4WSW9G GeneTree:ENSGT00390000001443 EMBL:BX000453
EMBL:CT030217 EMBL:BC093280 IPI:IPI00498557 RefSeq:NP_001017638.1
UniGene:Dr.79765 ProteinModelPortal:Q566Y1 STRING:Q566Y1
Ensembl:ENSDART00000002498 Ensembl:ENSDART00000145993 GeneID:550331
KEGG:dre:550331 InParanoid:A2BDL9 OMA:EDPANIL NextBio:20879589
Bgee:Q566Y1 Uniprot:Q566Y1
Length = 397
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 45/147 (30%), Positives = 79/147 (53%)
Query: 110 PGVKCG-PNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH 168
PG + NG + VSSG++ LD ++GGG +G+L++V ED + +LL+ F+++G+V
Sbjct: 32 PGTRPSVQNGQLLVSSGVSSLDYVIGGGLAVGTLLLVEEDRYDSYSRMLLKYFLAEGIVC 91
Query: 169 GQPLLYASPSKDPRGFLGTLPSP-----ASLK--HDKSRDRESEQEKGLRIAWQYKKYMG 221
G L AS P + LPSP AS+K +S+ + + ++IAW+Y
Sbjct: 92 GHELFLASARDHPDQIMQELPSPILDDVASMKMSEGQSQPNDPDNPDTMKIAWRY----- 146
Query: 222 ENQPNFDSHRDNKQDYCNEFDFRKPLE 248
+NQP + + + + +D K ++
Sbjct: 147 QNQPRVQTALASSSRFGHYYDASKTMD 173
Score = 115 (45.5 bits), Expect = 0.00089, P = 0.00089
Identities = 66/283 (23%), Positives = 123/283 (43%)
Query: 161 FMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYM 220
F++ H ++ PS P L + S + +S+ + + ++IAW+Y+
Sbjct: 96 FLASARDHPDQIMQELPS--P--ILDDVAS-MKMSEGQSQPNDPDNPDTMKIAWRYQNQP 150
Query: 221 GENQPNFDSHR-DNKQDYCNEFD--FRKPLERHYFTRQRVNCV--GIQH--SKNLAALQE 273
S R + D D + + H F + + V G+ S LA L+
Sbjct: 151 RVQTALASSSRFGHYYDASKTMDPELLQAAKYHSFYQLQETPVTTGLSSLPSPYLALLKS 210
Query: 274 HCASFLAQHQRNDGSSA-LAGR----IAIQSLCAPQ------CEHSNMDWEMLS-FIKSL 321
L Q + DGS+ L GR + + SL + C+ ++ LS F+ +L
Sbjct: 211 --IQTLIQKEGFDGSTPQLRGRNVLRVGLHSLGSVLWGDDVCCKDNSAHCHALSTFLYAL 268
Query: 322 KGMVRSSNAVVVITFPPXXXXXXXTK-RWQHMADTLLSVAAIPDEDKELAKLLSGYQDMV 380
+G++R+S +V ++T P R ++DT +++ + +KE L Y+D
Sbjct: 269 RGLLRTSLSVAMMTVPSHLIQSRAVMGRIIRLSDTAIALESFRGSEKETNPL---YKDYH 325
Query: 381 GLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAP 423
GLL V ++ RLN + + + KL++++F + E L+ P
Sbjct: 326 GLLYVRQIPRLNCLTSEVPDTKDLAFKLKRKQFTI-ERLHLPP 367
>UNIPROTKB|Q5XG58 [details] [associations]
symbol:elp4 "Elongator complex protein 4" species:8355
"Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] [GO:0008607 "phosphorylase kinase regulator activity"
evidence=ISS] InterPro:IPR008728 Pfam:PF05625 GO:GO:0005737
GO:GO:0008607 GO:GO:0006357 GO:GO:0006351 GO:GO:0008023
GO:GO:0033588 CTD:26610 HOVERGEN:HBG104285 KO:K11375 EMBL:BC084604
RefSeq:NP_001088363.1 UniGene:Xl.49587 ProteinModelPortal:Q5XG58
GeneID:495207 KEGG:xla:495207 Xenbase:XB-GENE-991978 Uniprot:Q5XG58
Length = 408
Score = 183 (69.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 47/163 (28%), Positives = 87/163 (53%)
Query: 95 SSFSRNLSAVSSSQTPGVKCGP-NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPH 153
+SF R + + PG + NG + VS+G+ LD ILGGG +G+L+++ ED +
Sbjct: 20 TSFKRKVRGKFPA-LPGTRPSVHNGQLLVSTGVPSLDHILGGGLAVGTLLLIEEDTYGTY 78
Query: 154 HMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPAS----LKHDKSRDRES----- 204
LLL+ F+++G+V G + AS + DP L LPSP + ++D R +++
Sbjct: 79 SHLLLKYFLAEGVVSGHEVFVASANDDPTETLQDLPSPLTDEVPRQNDPKRTKDTSGPAD 138
Query: 205 EQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPL 247
+ ++ ++IAW+Y +N P ++ + + + +D K +
Sbjct: 139 DSQEMMKIAWRY-----QNLPKVETLPISSSRFGHYYDLSKTM 176
Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 61/247 (24%), Positives = 105/247 (42%)
Query: 197 DKSRDRESEQEKGLRIAWQYKKYMG-ENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQ 255
D S + QE ++IAW+Y+ E P S + D + H F
Sbjct: 132 DTSGPADDSQEM-MKIAWRYQNLPKVETLPISSSRFGHYYDLSKTMPPEMSAKSHRFYLP 190
Query: 256 RVNCVGIQHSKNLAALQEHCASFLAQ-----HQRN-DGSSALAG-----RIAIQSLCAPQ 304
R+ + +N++ + + L HQ DGS+ R+ I+SL +
Sbjct: 191 RI--MSANQKQNVSEVTCNYNQLLESIQRVVHQEGYDGSNPQKRPKTILRLGIESLGSVL 248
Query: 305 -----C--EHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPXXXXXXX-TKRWQHMADTL 356
C E + F+ L+G++R+S +V VIT P T R + ++DT+
Sbjct: 249 WADDICSQERPENQHSLTRFLYGLRGLLRTSLSVCVITVPTYLIQNKAITTRLRSLSDTV 308
Query: 357 LSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVL 416
+ + + + E L Y+D GLL+VH++ RLN+ + + + KL KR+ +
Sbjct: 309 VGLESFIGSEMEANPL---YKDYHGLLHVHQIPRLNSLISDGSDTKDLAFKL-KRKIFAI 364
Query: 417 ECLNQAP 423
E L+ P
Sbjct: 365 ERLHLPP 371
>WB|WBGene00016128 [details] [associations]
symbol:elpc-4 species:6239 "Caenorhabditis elegans"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033588 "Elongator holoenzyme complex"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR008728 Pfam:PF05625 GO:GO:0009792 GO:GO:0005737
GO:GO:0000003 GO:GO:0008607 GO:GO:0006357 GO:GO:0006351
GO:GO:0008023 GO:GO:0033588 eggNOG:NOG238377 KO:K11375
HOGENOM:HOG000112360 OMA:AADTHIQ EMBL:FO080616 PIR:T34124
RefSeq:NP_501343.1 ProteinModelPortal:Q18195 DIP:DIP-26243N
IntAct:Q18195 MINT:MINT-1052341 PaxDb:Q18195 EnsemblMetazoa:C26B2.6
GeneID:182929 KEGG:cel:CELE_C26B2.6 UCSC:C26B2.6 CTD:182929
WormBase:C26B2.6 GeneTree:ENSGT00390000001443 InParanoid:Q18195
NextBio:919324 Uniprot:Q18195
Length = 334
Score = 167 (63.8 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 66/289 (22%), Positives = 128/289 (44%)
Query: 123 SSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPR 182
SSG D ++GG S+V++ E + L+R+F+++GL HG A P++DP+
Sbjct: 23 SSGCDSFDTLIGGALVNSSIVLIDEYRSRCYGSYLIRSFLAEGLHHGHRCFIADPTEDPK 82
Query: 183 GFLGTLPSPASLKHDKSRD----RESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYC 238
+ +PS + ++++ +E E ++IAW+Y G N S +
Sbjct: 83 E-INLIPSRRTSTDMQNQEIPNSLPAENENSMKIAWRY----G-NVKQVSSSLGPLSNE- 135
Query: 239 NEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAG----- 293
N++DF K +E V+ V + L + E + +++ + S G
Sbjct: 136 NQYDFTKHVEN-----PNVD-VYAEKVFTLKGIYETLCQIVKENEAHTKSGGRGGPKKNL 189
Query: 294 -RIAIQSLCAPQCEHSNMDWEMLS-FIKSLKGMVRSSNAVVVITFPPXXXXXXXTKRWQH 351
R+ ++++ CE D++ L F+ L+ + RSS +V IT + +
Sbjct: 190 LRVVLKNIDMEICE----DYKFLGRFLCCLRSLARSSYMIVYITANSFRVPKPTWRILES 245
Query: 352 MADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILE 400
ADT + + + +K++ K L L ++ ++ + T P IL+
Sbjct: 246 AADTHIQLMPFDENEKKMFKHLGTAHGYFHLKSLPRLMSVGTHTPPILD 294
>UNIPROTKB|Q18195 [details] [associations]
symbol:elpc-4 "Putative elongator complex protein 4"
species:6239 "Caenorhabditis elegans" [GO:0008607 "phosphorylase
kinase regulator activity" evidence=ISS] [GO:0008023 "transcription
elongation factor complex" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR008728
Pfam:PF05625 GO:GO:0009792 GO:GO:0005737 GO:GO:0000003
GO:GO:0008607 GO:GO:0006357 GO:GO:0006351 GO:GO:0008023
GO:GO:0033588 eggNOG:NOG238377 KO:K11375 HOGENOM:HOG000112360
OMA:AADTHIQ EMBL:FO080616 PIR:T34124 RefSeq:NP_501343.1
ProteinModelPortal:Q18195 DIP:DIP-26243N IntAct:Q18195
MINT:MINT-1052341 PaxDb:Q18195 EnsemblMetazoa:C26B2.6 GeneID:182929
KEGG:cel:CELE_C26B2.6 UCSC:C26B2.6 CTD:182929 WormBase:C26B2.6
GeneTree:ENSGT00390000001443 InParanoid:Q18195 NextBio:919324
Uniprot:Q18195
Length = 334
Score = 167 (63.8 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 66/289 (22%), Positives = 128/289 (44%)
Query: 123 SSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPR 182
SSG D ++GG S+V++ E + L+R+F+++GL HG A P++DP+
Sbjct: 23 SSGCDSFDTLIGGALVNSSIVLIDEYRSRCYGSYLIRSFLAEGLHHGHRCFIADPTEDPK 82
Query: 183 GFLGTLPSPASLKHDKSRD----RESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYC 238
+ +PS + ++++ +E E ++IAW+Y G N S +
Sbjct: 83 E-INLIPSRRTSTDMQNQEIPNSLPAENENSMKIAWRY----G-NVKQVSSSLGPLSNE- 135
Query: 239 NEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAG----- 293
N++DF K +E V+ V + L + E + +++ + S G
Sbjct: 136 NQYDFTKHVEN-----PNVD-VYAEKVFTLKGIYETLCQIVKENEAHTKSGGRGGPKKNL 189
Query: 294 -RIAIQSLCAPQCEHSNMDWEMLS-FIKSLKGMVRSSNAVVVITFPPXXXXXXXTKRWQH 351
R+ ++++ CE D++ L F+ L+ + RSS +V IT + +
Sbjct: 190 LRVVLKNIDMEICE----DYKFLGRFLCCLRSLARSSYMIVYITANSFRVPKPTWRILES 245
Query: 352 MADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILE 400
ADT + + + +K++ K L L ++ ++ + T P IL+
Sbjct: 246 AADTHIQLMPFDENEKKMFKHLGTAHGYFHLKSLPRLMSVGTHTPPILD 294
>ASPGD|ASPL0000056386 [details] [associations]
symbol:AN0191 species:162425 "Emericella nidulans"
[GO:0002098 "tRNA wobble uridine modification" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR008728 Pfam:PF05625 EMBL:BN001308 GO:GO:0006357
EMBL:AACD01000005 GO:GO:0033588 eggNOG:NOG238377 KO:K11375
OMA:IEEWGIP OrthoDB:EOG4BS0VP HOGENOM:HOG000175573
RefSeq:XP_657795.1 STRING:Q5BGY9 EnsemblFungi:CADANIAT00002542
GeneID:2875969 KEGG:ani:AN0191.2 Uniprot:Q5BGY9
Length = 391
Score = 166 (63.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 81/313 (25%), Positives = 135/313 (43%)
Query: 103 AVSSSQT-PGVKCGPN-GTMFVSSGIADLDKILGG--GFPLGSLVMVMEDAEAPHHMLLL 158
AVSS T PGV+ P+ G S+G LD +L G G P+G +++ E+ LL
Sbjct: 29 AVSSPPTTPGVRPSPDDGRPTTSTGSPSLDSLLAGHGGLPIGKTLLLEENGTTDFAGALL 88
Query: 159 RNFMSQGLVHGQPL-LYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYK 217
R + ++G+V Q + + P + R G + PA DKS R+ E+ ++IAW+Y+
Sbjct: 89 RYYAAEGVVQDQKVHVIGMPEQWGRTLPGLI-GPAEAADDKSDKRKGER---MKIAWRYE 144
Query: 218 KYMGENQPNFDSHRDNKQDYCNEFD--FRKPLERHYF--TRQRVN-CVG-IQHSKNLAAL 271
+ +GE R + D KP H F T++ + +G I + +
Sbjct: 145 R-LGEFGAGVAGARGPSDQSLSSVDDGTAKPAFCHTFDLTKRLTHPSIGNITYIPLIPTK 203
Query: 272 QEHCASFLAQHQRNDGSSA--LAGRIAIQSLCAPQC---EHSNMDWEMLSFIKSLKGMVR 326
+ S L + Q SS + RI I S P E S + +L F+ SL+ +
Sbjct: 204 EPLLVSILKKLQTVIASSPPHIVHRIVIPSFLNPTLYPPEVSEPE-NVLPFLHSLRALAS 262
Query: 327 S--SNAVVVITFPPXXX-XXXXTKRWQH-MADTLLSVAAIPDEDKELAK---LLSGYQDM 379
S S +++T P RW ++D ++ + P L+ S +
Sbjct: 263 SPSSRITLMMTIPLSLFPRSSGLVRWMEILSDGVIELCPFPHSSDALSTSGAATSHEEPP 322
Query: 380 VGLLNVHKVARLN 392
G+L H++ L+
Sbjct: 323 QGMLKTHRLPVLH 335
Score = 38 (18.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 42 STPTAALSLPPRVCSLRP 59
S P A+S PP +RP
Sbjct: 24 SQPQRAVSSPPTTPGVRP 41
>UNIPROTKB|Q60ZM2 [details] [associations]
symbol:elpc-4 "Putative elongator complex protein 4"
species:6238 "Caenorhabditis briggsae" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0008023 "transcription
elongation factor complex" evidence=ISS] [GO:0008607 "phosphorylase
kinase regulator activity" evidence=ISS] InterPro:IPR008728
Pfam:PF05625 GO:GO:0005737 GO:GO:0008607 GO:GO:0006357
GO:GO:0006351 GO:GO:0008023 GO:GO:0033588 eggNOG:NOG238377
KO:K11375 EMBL:HE600976 RefSeq:XP_002634384.1
ProteinModelPortal:Q60ZM2 EnsemblMetazoa:CBG17740 GeneID:8576379
KEGG:cbr:CBG17740 CTD:8576379 WormBase:CBG17740
HOGENOM:HOG000112360 OMA:AADTHIQ Uniprot:Q60ZM2
Length = 333
Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 69/311 (22%), Positives = 133/311 (42%)
Query: 101 LSAVSSSQTPGVKCGPNGTMF-VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLR 159
L+ S Q PG C + +SG D +LGG S+V++ E + L+R
Sbjct: 2 LNIGDSVQIPG--CSTKKRLLETTSGCDSFDTLLGGALVNSSIVLIDEYRSRCYGSYLVR 59
Query: 160 NFMSQGLVHGQPLLYASPSKD-PRGFLGTLPSPASLKHDKSRDRES---EQEKGLRIAWQ 215
+F+++GL +G A PS+D L +P+ + + D+ ++ S + + ++IAW+
Sbjct: 60 SFLAEGLHYGHRCFVADPSEDVSETILKVIPTRKAAEDDQKKEIPSSPGQADNDMKIAWR 119
Query: 216 Y---KKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQ 272
Y K+ E P+ N++DF K LE V+ + + + L
Sbjct: 120 YGNVKQVTSEIGPSG-----------NQYDFSKHLEN-----SNVDVYN-EEIPSFSGLY 162
Query: 273 EHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNM--DWEMLS-FIKSLKGMVRSSN 329
+ + + + + S+ G + H N+ D+E L F+ L+ + RSS
Sbjct: 163 KILCEVVQKEEAHTKSTGRGGPKKNLLRVVLKNIHLNIWEDYESLGRFLCCLRSLARSSY 222
Query: 330 AVVVITFPPXXXXXXXTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVA 389
AV+ I ++ + ADT + + +++K++ + L L ++ ++
Sbjct: 223 AVIYIVANSHRMPNDTWRQLESAADTHIQLMPFNEQEKKMFRHLGTAHGYFHLKSLPRLM 282
Query: 390 RLNTQVPLILE 400
T P IL+
Sbjct: 283 SAGTHTPPILD 293
>UNIPROTKB|G4MSN9 [details] [associations]
symbol:MGG_07081 "Elongator complex protein 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR008728 Pfam:PF05625 GO:GO:0006357
EMBL:CM001232 GO:GO:0033588 KO:K11375 RefSeq:XP_003715267.1
EnsemblFungi:MGG_07081T0 GeneID:2682966 KEGG:mgr:MGG_07081
Uniprot:G4MSN9
Length = 407
Score = 154 (59.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 68/242 (28%), Positives = 108/242 (44%)
Query: 110 PGVKCGP-NGTMFVSSGIADLDKILGG--GFPLGSLVMVMEDAEAPHHMLLLRNFMSQGL 166
PG++ P +G + S+G A LD +L G G PLG+ ++V E +LLR + ++GL
Sbjct: 38 PGLRPSPLDGRLTTSTGTASLDTLLAGHAGLPLGTSLLVEEQGTTDFSGVLLRYYAAEGL 97
Query: 167 VHGQPLLYASPSKDPRGFLGTLP-----SPASLKHDKSRDRESEQEKG--LRIAWQYKKY 219
V G + P + LP S +S SR S G ++IAW+Y+
Sbjct: 98 VQGH---HVHALAFPEAWKYELPALSYVSKSSSGSTPSRTFASADSAGDKMKIAWRYEA- 153
Query: 220 MGENQPNFDSHRDN-----KQDYCNEFDFRKPLERHYFTRQRVNCVGIQH-SKNLAALQE 273
+G ++ R+ +C+ +D K L Q + + S +L L E
Sbjct: 154 LGNSRSQAQPARERAGGPGSSVFCHSYDLSKRLSTSDIKGQFHSIPSVSPLSWSLEQLAE 213
Query: 274 HCASFL-AQHQRNDGSSALAG---RIAIQSLCAPQC-EHSNMD-WEMLSFIKSLKGMVRS 327
L +H +N SS+ R+ I SL +P S D E+L F+ SL+G++R
Sbjct: 214 ASPLRLFIKHLQNSLSSSSPNTIHRVIIPSLLSPTLYPGSACDPTEVLQFLHSLRGLLRL 273
Query: 328 SN 329
N
Sbjct: 274 YN 275
>POMBASE|SPCC11E10.06c [details] [associations]
symbol:elp4 "elongator complex subunit Elp4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002098
"tRNA wobble uridine modification" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033588
"Elongator holoenzyme complex" evidence=ISO] InterPro:IPR008728
Pfam:PF05625 PomBase:SPCC11E10.06c GO:GO:0005829 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0006357 GO:GO:0006351
GO:GO:0002098 GO:GO:0033588 eggNOG:NOG238377 KO:K11375 PIR:T40857
RefSeq:NP_588202.1 EnsemblFungi:SPCC11E10.06c.1 GeneID:2538987
KEGG:spo:SPCC11E10.06c OMA:IEEWGIP OrthoDB:EOG4BS0VP
NextBio:20800162 Uniprot:Q9USP1
Length = 361
Score = 141 (54.7 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 78/342 (22%), Positives = 141/342 (41%)
Query: 96 SFSRNLSA-VSSSQTP-GVKCGPNGTMFV-SSGIADLDKILGGGFPLGSLVMVMEDAEAP 152
SF R + ++ + P GV+ ++ SSG + D L GG P+ SL+++ ED+
Sbjct: 2 SFKRKAAPQIAPTNLPTGVRLSSKDARWITSSGSSSFDYYLSGGIPMKSLLVIEEDS-MD 60
Query: 153 HHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFL---GTLPSPASLKHDKSRDRESE---- 205
+ +LL+ F ++GL +++ PS F G P ++ D S
Sbjct: 61 YASVLLKFFAAEGLKQDH-VIWLGPSIGEMWFRQLPGDSDRPNKNENSAGEDNHSSPPSK 119
Query: 206 --QEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQ 263
Q++ ++IAW+Y++ P D Y + FD K L + V+ ++
Sbjct: 120 NPQQERMKIAWRYEQVSKTKAPTLDMIPPG---YTHSFDLSKNLIVKSDMKYAVSPFPLE 176
Query: 264 HSKN-LAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCE--HSNMDWEMLSFIKS 320
N A + E FL+ G+ R+ + S+ +P + + FI +
Sbjct: 177 TGSNPYAPVIESLTRFLST--LTPGTVC---RLVLPSILSPAFYSIRATHPQHFIRFIHT 231
Query: 321 LKGMVRSSNAVVVITF--PPXXXXXXXTKR--W-QHMADTLLSVAAIPDEDKELAKLLSG 375
L +++ + +V +I P ++ W +++A + S+ P KE L
Sbjct: 232 LSSLIKCTTSVHLICMCSVPSTLFSRDCEQIFWLENLASAVFSLHPFPV--KETVNGL-- 287
Query: 376 YQDMVGLLNVHKV--ARLNTQVPLILEATTFSIKLQKRRFLV 415
+GL +HK+ A T EA S + KRRF +
Sbjct: 288 VTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTI 329
>CGD|CAL0001223 [details] [associations]
symbol:orf19.3759 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0002098 "tRNA wobble uridine
modification" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR008728 Pfam:PF05625 CGD:CAL0001223 GO:GO:0006357
GO:GO:0033588 KO:K11375 eggNOG:NOG250551 EMBL:AACQ01000238
EMBL:AACQ01000237 RefSeq:XP_710776.1 RefSeq:XP_710789.1
STRING:Q59M28 GeneID:3647604 GeneID:3647625 KEGG:cal:CaO19.11243
KEGG:cal:CaO19.3759 Uniprot:Q59M28
Length = 446
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 73/353 (20%), Positives = 153/353 (43%)
Query: 83 VDAAMATTKPRLSSFSRNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSL 142
V ++ T++P S+ S +L + Q G+ G N + SG D +L F +
Sbjct: 81 VRPSLVTSQPTTSTGSSDLDKILLHQ--GLPLG-NSLLIEESGTTDFSSVLLRAFASQGI 137
Query: 143 V--MVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFL----GTLPSPASLKH 196
+ + D A H+++L M+Q + P +Y SK+ + + S ++L +
Sbjct: 138 LHNRISNDINA--HVIVLG--MNQQWANDLPGVYKGSSKEQKKAKIIENESKVSVSNLSN 193
Query: 197 DKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQR 256
S + + L+IAW+Y + + ++ + Y N+FD + L Q
Sbjct: 194 APSTTNRTTTDPNLKIAWRYGLNKKPESKDENESSNSYEHYNNQFDLTQKLVPGP-NPQD 252
Query: 257 VNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWE--M 314
++ + + N Q +S + R++ + + R+ I S+ P H + +
Sbjct: 253 ISFLPLNAEFNNMVNQ--ISSIIKNQLRSNPTKVI--RLIIPSILNPSLYHPSCSSSTFI 308
Query: 315 LSFIKSLKGMVR--SSNAVVV--ITFPPXXXXXXXTKRWQHMADTLLSVAAIPDEDKELA 370
+ FI SL+ +VR S+N V+V I+ Q + D ++ + ++E+
Sbjct: 309 VPFIHSLRSLVRRFSNNLVLVCSISLDLYPKDSSLLLFIQSLFDAIIHLQPF---NQEMT 365
Query: 371 KLLS-GYQD-----MVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLE 417
+LL Y++ GL+N+ K+ L+ + +++ ++ K +++F + E
Sbjct: 366 QLLEKAYKNEPTKIQQGLVNIIKIPILSEKGLMMVHDGEYAFKNGRKKFEIEE 418
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 449 413 0.00080 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 618 (66 KB)
Total size of DFA: 275 KB (2145 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.00u 0.11s 34.11t Elapsed: 00:00:01
Total cpu time: 34.00u 0.11s 34.11t Elapsed: 00:00:01
Start: Thu May 9 19:36:07 2013 End: Thu May 9 19:36:08 2013