BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013117
(449 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C778|ELP4_ARATH Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1
SV=1
Length = 355
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/351 (65%), Positives = 278/351 (79%), Gaps = 9/351 (2%)
Query: 99 RNLSAVSSSQTPGVKCGPNGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLL 158
RN+S VSS Q PG+K GPNGT F+SSGI DLD+ILGGG+PLGSLVMVMED EAPHHM LL
Sbjct: 14 RNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLL 73
Query: 159 RNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKK 218
R +MSQGLV+ QPLLYASPSKDP+GFLGTLP PAS K DK + +Q + LRIAWQY+K
Sbjct: 74 RTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRK 133
Query: 219 YMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF 278
Y+ ENQ N DY N+FD RKPLER + + + ++CV + S +L+ Q+HCA+F
Sbjct: 134 YL-ENQKN------AIDDYSNDFDMRKPLERQFLSGRPIDCVSLLDSSDLSIAQDHCATF 186
Query: 279 LAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPP 338
L++ RN + A GRIAIQS C+P CE+S + +MLSFI+ LK M+ SNAV ++TFPP
Sbjct: 187 LSKFPRNSSNIASIGRIAIQSFCSPLCEYSEKESDMLSFIRLLKSMLMVSNAVAIVTFPP 246
Query: 339 SLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLI 398
SLLS SS+KR QHMADTLLS+ AIPD DKEL KLL+GY+D+ G LN+HKVAR+NTQVP+I
Sbjct: 247 SLLSPSSSKRLQHMADTLLSIKAIPDGDKELEKLLTGYKDINGFLNIHKVARINTQVPVI 306
Query: 399 LEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGSCSGSSKAGTLDF 449
LEA TFS+ L+KRRFL LECLNQAPVDGSSG+SYGTSGSC SSK+G LDF
Sbjct: 307 LEAKTFSMSLKKRRFLALECLNQAPVDGSSGTSYGTSGSC--SSKSGALDF 355
>sp|Q5XG58|ELP4_XENLA Elongator complex protein 4 OS=Xenopus laevis GN=elp4 PE=2 SV=1
Length = 408
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 182/366 (49%), Gaps = 56/366 (15%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD ILGGG +G+L+++ ED + LLL+ F+++G+V G + AS
Sbjct: 42 NGQLLVSTGVPSLDHILGGGLAVGTLLLIEEDTYGTYSHLLLKYFLAEGVVSGHEVFVAS 101
Query: 177 PSKDPRGFLGTLPSPAS----LKHDKSRDRES-----EQEKGLRIAWQYKKYMGENQPNF 227
+ DP L LPSP + ++D R +++ + ++ ++IAW+Y +N P
Sbjct: 102 ANDDPTETLQDLPSPLTDEVPRQNDPKRTKDTSGPADDSQEMMKIAWRY-----QNLPKV 156
Query: 228 DSHRDNKQDYCNEFDFRKPL--------ERHYFTR-------QRVNCVGIQHSKNLAALQ 272
++ + + + +D K + R Y R Q V+ V +++ L ++Q
Sbjct: 157 ETLPISSSRFGHYYDLSKTMPPEMSAKSHRFYLPRIMSANQKQNVSEVTCNYNQLLESIQ 216
Query: 273 E--HCASFLAQHQRNDGSSALAGRIAIQSLCA------------PQCEHSNMDWEMLSFI 318
H + + + + L R+ I+SL + P+ +HS + F+
Sbjct: 217 RVVHQEGYDGSNPQKRPKTIL--RLGIESLGSVLWADDICSQERPENQHS-----LTRFL 269
Query: 319 KSLKGMVRSSNAVVVITFPPSLL-SLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQ 377
L+G++R+S +V VIT P L+ + + T R + ++DT++ + + + E L Y+
Sbjct: 270 YGLRGLLRTSLSVCVITVPTYLIQNKAITTRLRSLSDTVVGLESFIGSEMEANPL---YK 326
Query: 378 DMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSSYGTSGS 437
D GLL+VH++ RLN+ + + + KL KR+ +E L+ P D S S +
Sbjct: 327 DYHGLLHVHQIPRLNSLISDGSDTKDLAFKL-KRKIFAIERLHLPP-DLSDTVSRSSKQD 384
Query: 438 CSGSSK 443
+GS+K
Sbjct: 385 LAGSAK 390
>sp|Q566Y1|ELP4_DANRE Elongator complex protein 4 OS=Danio rerio GN=elp4 PE=2 SV=2
Length = 397
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 163/329 (49%), Gaps = 38/329 (11%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VSSG++ LD ++GGG +G+L++V ED + +LL+ F+++G+V G L AS
Sbjct: 40 NGQLLVSSGVSSLDYVIGGGLAVGTLLLVEEDRYDSYSRMLLKYFLAEGIVCGHELFLAS 99
Query: 177 PSKDPRGFLGTLPSP-----ASLK--HDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDS 229
P + LPSP AS+K +S+ + + ++IAW+Y +NQP +
Sbjct: 100 ARDHPDQIMQELPSPILDDVASMKMSEGQSQPNDPDNPDTMKIAWRY-----QNQPRVQT 154
Query: 230 HRDNKQDYCNEFDFRKPLERHYFTRQRVNCV-GIQHSKNLAALQEHCASFLA-------- 280
+ + + +D K ++ + + +Q + L + +LA
Sbjct: 155 ALASSSRFGHYYDASKTMDPELLQAAKYHSFYQLQETPVTTGLSSLPSPYLALLKSIQTL 214
Query: 281 -QHQRNDGSS-ALAG----RIAIQSLCAPQ------CEHSNMDWEMLS-FIKSLKGMVRS 327
Q + DGS+ L G R+ + SL + C+ ++ LS F+ +L+G++R+
Sbjct: 215 IQKEGFDGSTPQLRGRNVLRVGLHSLGSVLWGDDVCCKDNSAHCHALSTFLYALRGLLRT 274
Query: 328 SNAVVVITFPPSLL-SLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVH 386
S +V ++T P L+ S + R ++DT +++ + +KE L Y+D GLL V
Sbjct: 275 SLSVAMMTVPSHLIQSRAVMGRIIRLSDTAIALESFRGSEKETNPL---YKDYHGLLYVR 331
Query: 387 KVARLNTQVPLILEATTFSIKLQKRRFLV 415
++ RLN + + + KL++++F +
Sbjct: 332 QIPRLNCLTSEVPDTKDLAFKLKRKQFTI 360
>sp|Q2TBH6|ELP4_BOVIN Elongator complex protein 4 OS=Bos taurus GN=ELP4 PE=2 SV=1
Length = 423
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 160/330 (48%), Gaps = 39/330 (11%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD++LGGG +G+++++ ED + LL + F+++G+V G LL AS
Sbjct: 58 NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVSGHALLVAS 117
Query: 177 PSKDPRGFLGTLPSPA---SLKHDKSRD---RESEQEKGLRIAWQYKKYMGENQPNFDSH 230
+DP L LP+P S K + D + E + ++IAW+Y+ P ++
Sbjct: 118 AKEDPADILQKLPAPLIDDSYKKECDEDVCSHKMEPDIKMKIAWRYQLL-----PKMEAG 172
Query: 231 RDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF-----LAQHQRN 285
+ + + +D K + + + + + + A E C+ L Q +N
Sbjct: 173 PVSSSRFGHYYDISKRIPQELIETSKWHGFFLPEKISSAFNVESCSLTPGYMKLLQFIQN 232
Query: 286 -------DGSSALAG-----RIAIQSLCAPQ-------CEHSNMDWEMLSFIKSLKGMVR 326
DGS+ RI IQ+L +P E+ + + F+ L+G++R
Sbjct: 233 IIYKEGFDGSNPQKKQKNILRIGIQNLGSPLWGDDICCTENCDTSHSLTKFLYILRGLLR 292
Query: 327 SSNAVVVITFPPSLL-SLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNV 385
+S + +IT P L+ + + R +++DT++ + + +KE L Y+D GL+++
Sbjct: 293 TSLSACIITMPTHLIQNKAVIARVTNLSDTVVGLESFIGSEKETNPL---YKDYHGLIHI 349
Query: 386 HKVARLNTQVPLILEATTFSIKLQKRRFLV 415
++ RLN + I + + KL+K+ F +
Sbjct: 350 RQIPRLNNLIYDISDVKDLAFKLKKKLFTI 379
>sp|Q9ER73|ELP4_MOUSE Elongator complex protein 4 OS=Mus musculus GN=Elp4 PE=2 SV=2
Length = 422
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 166/342 (48%), Gaps = 48/342 (14%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD++LGGG +G+L+++ ED + LL + FM++G+++G LL AS
Sbjct: 57 NGQLLVSTGLPALDQLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFMAEGIINGHTLLVAS 116
Query: 177 PSKDPRGFLGTLPSPASLKHDKSRD--------RESEQEKGLRIAWQYKKYMGENQPNFD 228
++P L LP+P L D S+ + E ++IAW+Y+ QP +
Sbjct: 117 AKENPAKILQELPAP--LLDDNSKKELEDVHSAKTPEPNVNMKIAWRYQL-----QPKME 169
Query: 229 SHRDNKQDYCNEFDFRK--PLE-------RHYFTRQRVN--------CVGIQHSKNLAAL 271
+ + + +D K P E +F + ++ + + + L +
Sbjct: 170 VGPVSSSRFGHYYDLSKRIPWELLQSSKWHGFFLPEHISPDLKGESCFLSCGYMRLLEFI 229
Query: 272 QE--HCASFLAQHQRNDGSSALAGRIAIQSLCAPQC-------EHSNMDWEMLSFIKSLK 322
Q+ + F + + + L RI IQ+L +P E+ + + + F+ L+
Sbjct: 230 QKSVYAEGFDGANPQKKQKNIL--RIGIQNLGSPLWGDDICCKENCDNNHRLTKFLYILR 287
Query: 323 GMVRSSNAVVVITFPPSLL-SLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVG 381
G++RSS + +IT P L+ + S T R ++++DT++ + + ++E L Y+D G
Sbjct: 288 GLLRSSLSACIITMPAHLVQNKSITTRVRNLSDTVVGLESFIGSERETNPL---YKDYHG 344
Query: 382 LLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAP 423
L+++ K+ RLN + + KL KR+ +E L+ P
Sbjct: 345 LIHIRKIPRLNNLTCDESDVKDLAFKL-KRKLFTIERLHLPP 385
>sp|Q54XS0|ELP4_DICDI Probable elongator complex protein 4 OS=Dictyostelium discoideum
GN=elp4 PE=3 SV=1
Length = 439
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 170/348 (48%), Gaps = 41/348 (11%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
N + S+G+ DLD I+GGG P+GS++M+ ED + ++M LL+ F+++G++ Q + ++S
Sbjct: 56 NSNLLTSTGLTDLDDIIGGGIPIGSILMIEEDINSSYYMFLLKYFLAEGVLQQQGVFFSS 115
Query: 177 -PSKDPRGFLGTLPSPASLKHDKSRDRES----------------EQEKGLRIAWQYKKY 219
DP L LP+ + + + D+ + L+IAW+Y++Y
Sbjct: 116 LIGIDPFEILNKLPARITKEEEIEADKNDTTNNINTNINTNNNNKQPTDELKIAWRYQQY 175
Query: 220 ----MGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCV---------GIQHSK 266
+ + Q + Q +C+ +DF + + + ++ + G +
Sbjct: 176 VSNELSKQQQQQSASTIMNQTFCHSYDFTRKMNVQSMNPELIHTLSHDAQSQAEGTSPYR 235
Query: 267 NL-AALQEHCASFLAQHQRN-DGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGM 324
NL +Q + + N D + L R+ IQS +P SN + ++ F+ +LKG+
Sbjct: 236 NLFLEIQNLVYKYNKEAAMNPDQTRVL--RLCIQSFSSPLW--SNDEEGVIEFLHALKGL 291
Query: 325 VRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLN 384
+RSS A VI+ P + S + K+ H+ DT++S+ + E + + Y +GL N
Sbjct: 292 LRSSVATCVISVPTYIYSGAFVKKIAHLCDTVVSINSFSGLGGETPEQFAEY---LGLFN 348
Query: 385 VHKVARLNT-QVPLILEATTFSIKLQKRRFLVLECLNQAPVDGSSGSS 431
+ K+ARLNT + + TF K+ KRR + +E ++ P +G S
Sbjct: 349 IRKIARLNTLSLSFHPDMLTFVFKM-KRRKMCIETIHLPPESSRAGDS 395
>sp|Q96EB1|ELP4_HUMAN Elongator complex protein 4 OS=Homo sapiens GN=ELP4 PE=1 SV=2
Length = 424
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 156/345 (45%), Gaps = 53/345 (15%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
NG + VS+G+ LD++LGGG +G+++++ ED + LL + F+++G+V+G LL AS
Sbjct: 58 NGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVAS 117
Query: 177 PSKDPRGFLGTLPSP-------ASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDS 229
+DP L LP+P D + E ++IAW+Y+ P +
Sbjct: 118 AKEDPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL-----PKMEI 172
Query: 230 HRDNKQDYCNEFDFRKPLERH---------YFTRQRVNCV--------------GIQHSK 266
+ + + +D K + + +F ++++ +Q +
Sbjct: 173 GPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQ 232
Query: 267 NLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQ-------CEHSNMDWEMLSFIK 319
N+ + S + QRN RI IQ+L +P E+ + F+
Sbjct: 233 NIIYEEGFDGSNPQKKQRN------ILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLY 286
Query: 320 SLKGMVRSSNAVVVITFPPSLL-SLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQD 378
L+G++R+S + +IT P L+ + + R ++D ++ + + ++E L Y+D
Sbjct: 287 VLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPL---YKD 343
Query: 379 MVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAP 423
GL+++ ++ RLN + + + KL KR+ +E L+ P
Sbjct: 344 YHGLIHIRQIPRLNNLICDESDVKDLAFKL-KRKLFTIERLHLPP 387
>sp|Q18195|ELP4_CAEEL Putative elongator complex protein 4 OS=Caenorhabditis elegans
GN=elpc-4 PE=3 SV=1
Length = 334
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 128/293 (43%), Gaps = 34/293 (11%)
Query: 122 VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDP 181
SSG D ++GG S+V++ E + L+R+F+++GL HG A P++DP
Sbjct: 22 TSSGCDSFDTLIGGALVNSSIVLIDEYRSRCYGSYLIRSFLAEGLHHGHRCFIADPTEDP 81
Query: 182 RGFLGTLPSPASLKHDKSRD----RESEQEKGLRIAWQY---KKYMGENQPNFDSHRDNK 234
+ + +PS + ++++ +E E ++IAW+Y K+ P +
Sbjct: 82 KE-INLIPSRRTSTDMQNQEIPNSLPAENENSMKIAWRYGNVKQVSSSLGPLSNE----- 135
Query: 235 QDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAG- 293
N++DF K +E V + L + E + +++ + S G
Sbjct: 136 ----NQYDFTKHVENPNVD------VYAEKVFTLKGIYETLCQIVKENEAHTKSGGRGGP 185
Query: 294 -----RIAIQSLCAPQCEHSNMDWEMLS-FIKSLKGMVRSSNAVVVITFPPSLLSLSSTK 347
R+ ++++ CE D++ L F+ L+ + RSS +V IT + + +
Sbjct: 186 KKNLLRVVLKNIDMEICE----DYKFLGRFLCCLRSLARSSYMIVYITANSFRVPKPTWR 241
Query: 348 RWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILE 400
+ ADT + + + +K++ K L L ++ ++ + T P IL+
Sbjct: 242 ILESAADTHIQLMPFDENEKKMFKHLGTAHGYFHLKSLPRLMSVGTHTPPILD 294
>sp|Q60ZM2|ELP4_CAEBR Putative elongator complex protein 4 OS=Caenorhabditis briggsae
GN=elpc-4 PE=3 SV=1
Length = 333
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 139/317 (43%), Gaps = 42/317 (13%)
Query: 101 LSAVSSSQTPGVKCGPNGTMF-VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLR 159
L+ S Q PG C + +SG D +LGG S+V++ E + L+R
Sbjct: 2 LNIGDSVQIPG--CSTKKRLLETTSGCDSFDTLLGGALVNSSIVLIDEYRSRCYGSYLVR 59
Query: 160 NFMSQGLVHGQPLLYASPSKD-PRGFLGTLPSPASLKHDKSRDRES---EQEKGLRIAWQ 215
+F+++GL +G A PS+D L +P+ + + D+ ++ S + + ++IAW+
Sbjct: 60 SFLAEGLHYGHRCFVADPSEDVSETILKVIPTRKAAEDDQKKEIPSSPGQADNDMKIAWR 119
Query: 216 Y---KKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQ 272
Y K+ E P+ N++DF K LE V + + + L
Sbjct: 120 YGNVKQVTSEIGPS-----------GNQYDFSKHLENSNVD------VYNEEIPSFSGLY 162
Query: 273 EHCASFLAQHQRNDGSSALAG------RIAIQSLCAPQCEHSNM--DWEMLS-FIKSLKG 323
+ + + + + S+ G R+ ++++ H N+ D+E L F+ L+
Sbjct: 163 KILCEVVQKEEAHTKSTGRGGPKKNLLRVVLKNI------HLNIWEDYESLGRFLCCLRS 216
Query: 324 MVRSSNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLL 383
+ RSS AV+ I + + ++ + ADT + + +++K++ + L L
Sbjct: 217 LARSSYAVIYIVANSHRMPNDTWRQLESAADTHIQLMPFNEQEKKMFRHLGTAHGYFHLK 276
Query: 384 NVHKVARLNTQVPLILE 400
++ ++ T P IL+
Sbjct: 277 SLPRLMSAGTHTPPILD 293
>sp|Q9VMQ7|ELP4_DROME Putative elongator complex protein 4 OS=Drosophila melanogaster
GN=CG6907 PE=1 SV=1
Length = 437
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 111 GVKCGPN-GTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHG 169
G + P+ + SSG LD ++GGG P+GS+ ++ ED H +L + F+++G++
Sbjct: 15 GTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLIEEDRFMTHAKVLAKYFLAEGVISK 74
Query: 170 QPLLYASPSKDPRGFLGTLPSPASLKHDKSRDRESE--------QEKGLRIAWQY 216
Q + S P L LP P + D+ +SE E GLRIAW+Y
Sbjct: 75 QEIFLGSLDDIPAEMLRRLPRPLT---DQESMEQSEVQALGDAGAENGLRIAWRY 126
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 294 RIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLS---LSSTKRWQ 350
R+ + SL +P + +++ F+ L VR+ N+V +IT P L++ S + +
Sbjct: 281 RVCLTSLGSPLWYDEHFGEDLIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIR 340
Query: 351 HMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQK 410
+ D + + + ++E +++ GLL++HK++ +NT + E + KL++
Sbjct: 341 QLVDYAIELESFAGSERETH---PAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRR 397
Query: 411 RRFLVLECLNQAPV--DGSSGSSYGTSGSCSGSSKAGTLDF 449
++F ++E + P + S+ SG S S+ +LDF
Sbjct: 398 KKF-IIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDF 437
>sp|Q02884|ELP4_YEAST Elongator complex protein 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ELP4 PE=1 SV=1
Length = 456
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 81/378 (21%)
Query: 111 GVKCGPNGTM-FVSSGIADLDKILGG-GFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH 168
GV+ P + S+G ADLD ILG G PLG+ V+V E + H +L + F +QG+VH
Sbjct: 74 GVRPSPATSQPTTSTGSADLDSILGHMGLPLGNSVLVEEQSTTEFHSILGKLFAAQGIVH 133
Query: 169 GQPLLYASPSKDPRG------------FLGTLP-----SPASLKHDKSRDRESE------ 205
+ + +S K G F LP S +K + + ES+
Sbjct: 134 NR-ISDSSADKTRNGDTHVIVLSLNQMFAKELPGIYKGSRKQMKKNLISEEESKVTVQNL 192
Query: 206 ---------QEKGLRIAWQYK----KYMGENQPNFDSHRDNKQ--DYCNEFDFRKPLERH 250
+ K L+IAW+YK K +G P+ D + N + DY ++FD
Sbjct: 193 NETQRSTPSRYKDLKIAWKYKLADEKRLG--SPDRDDIQQNSEYKDYNHQFDI------- 243
Query: 251 YFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQ----RNDGSSALAGRIAIQSLCAPQCE 306
R+ I A + ++ L+Q + RND RI I SL P
Sbjct: 244 ---TTRLMPAPIASELTFIAPTQPVSTILSQIEQTIKRNDKKLI---RIVIPSLLHPAMY 297
Query: 307 HSNM--DWEMLSFIKSLKGMVRSSNAVVV--------ITFPPSLLSLSSTKRWQHMADTL 356
M E++ + ++ +V+ VV I PP L+ L ++M D++
Sbjct: 298 PPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLLVLL------RNMFDSV 351
Query: 357 LSVAAIPDEDKELAKLLSGYQD---MVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRF 413
+++ E E + + Q GL+++ K+ + + + + ++ K +++F
Sbjct: 352 INLEPFNQEMTEFLERVYKSQPGKIQHGLVHILKLPVFTDRGEMRVLKSEWAFKNGRKKF 411
Query: 414 LVLECLNQAPVDGSSGSS 431
+ + PVD + GS+
Sbjct: 412 EIEQW--GIPVDDAEGSA 427
>sp|Q9USP1|ELP4_SCHPO Elongator complex protein 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=elp4 PE=3 SV=1
Length = 361
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 132/325 (40%), Gaps = 47/325 (14%)
Query: 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYAS 176
+ SSG + D L GG P+ SL+++ ED+ + +LL+ F ++GL +++
Sbjct: 26 DARWITSSGSSSFDYYLSGGIPMKSLLVIEEDSMD-YASVLLKFFAAEGLKQDH-VIWLG 83
Query: 177 PSKDPRGFL---GTLPSPASLKHDKSRDRESE------QEKGLRIAWQYKKYMGENQPNF 227
PS F G P ++ D S Q++ ++IAW+Y++ P
Sbjct: 84 PSIGEMWFRQLPGDSDRPNKNENSAGEDNHSSPPSKNPQQERMKIAWRYEQVSKTKAPTL 143
Query: 228 DSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKN-LAALQEHCASFLAQHQRND 286
D Y + FD K L + V+ ++ N A + E FL+
Sbjct: 144 DMI---PPGYTHSFDLSKNLIVKSDMKYAVSPFPLETGSNPYAPVIESLTRFLSTL---- 196
Query: 287 GSSALAGRIAIQSLCAPQCE--HSNMDWEMLSFIKSLKGMVRSSNAVVVI---TFPPSLL 341
+ R+ + S+ +P + + FI +L +++ + +V +I + P +L
Sbjct: 197 -TPGTVCRLVLPSILSPAFYSIRATHPQHFIRFIHTLSSLIKCTTSVHLICMCSVPSTLF 255
Query: 342 SLSSTKRW--QHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLIL 399
S + + +++A + S+ P KE L +GL +HK +PL L
Sbjct: 256 SRDCEQIFWLENLASAVFSLHPFP--VKETVNGL--VTQPLGLFRIHK-------LPLAL 304
Query: 400 ---------EATTFSIKLQKRRFLV 415
EA S + KRRF +
Sbjct: 305 PFTNHANSNEAGDLSFTVSKRRFTI 329
>sp|P13043|GVPD1_HALSA Protein GvpD 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=gvpD11 PE=4 SV=1
Length = 536
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 123 SSGIADLDKILGGGFPLGSLVM------VMEDAEAPHHMLLLRNFMSQGL 166
S+GI DLD+IL GG+ GS+V + DA + + +RNF+SQ +
Sbjct: 263 STGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLTLPTIRNFLSQEM 312
>sp|Q6L8L5|KAIC_SYNP2 Circadian clock protein kinase KaiC OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=kaiC PE=3 SV=2
Length = 516
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 122 VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQ-PLLYA 175
+SSG+ LDK+ GGGF S+++ A LL+ F+ +G G+ +L+A
Sbjct: 260 ISSGVETLDKMCGGGFFKDSIILAT-GATGTGKTLLVSKFLEEGCRRGERAILFA 313
>sp|P45266|RADA_HAEIN DNA repair protein RadA homolog OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=radA PE=3 SV=1
Length = 458
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 50/226 (22%)
Query: 67 STIYSWHFTGKTKLCSVDAAMATTKPRLSSFS-------RNLSAVSSSQTPGVKCGPNGT 119
S +W+ + +L S + R S ++ + LS +S +TP
Sbjct: 26 SACKAWNTITEVRLIS---TAKSKNDRFSGYAGETQAKIQTLSEISLQETP--------- 73
Query: 120 MFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSK 179
SSG ++LD++LGGG GS +++ A LLL+ GL LY +
Sbjct: 74 -RFSSGFSELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMC--GLAKNMTALYVT--- 127
Query: 180 DPRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCN 239
ES Q+ +R + + + +Q S +Q CN
Sbjct: 128 ---------------------GEESLQQVAMRAS---RLGLPSDQLKMLSETSVEQ-ICN 162
Query: 240 EFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRN 285
D KP + Q ++ IQ S A CASFL ++ +
Sbjct: 163 LADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKT 208
>sp|Q1RJR7|RADA_RICBR DNA repair protein RadA homolog OS=Rickettsia bellii (strain
RML369-C) GN=radA PE=3 SV=1
Length = 448
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 122 VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLR 159
+S+ I +LD++LGGG LGS +++ D LLL+
Sbjct: 66 ISTPIGELDRVLGGGLVLGSAILIGGDPGIGKSTLLLQ 103
>sp|Q10327|YD72_SCHPO Uncharacterized protein C32A11.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC32A11.02c PE=4 SV=1
Length = 851
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 340 LLSLSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQ----- 394
LL+ KRWQ ++ + ++ DK++ +L S Y+++ G L + +++ +
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQLFSNYKNIYGDLIKREGGQISLKTSMCL 417
Query: 395 ------VPLILEATTF----SIKLQKRRF-LVLECLN 420
VP+ILE + +++++ F +VLE LN
Sbjct: 418 EILRLGVPVILEKMQYFPIPRLEIEQPDFDVVLENLN 454
>sp|Q9WYK4|Y370_THEMA UPF0273 protein TM_0370 OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=TM_0370 PE=3 SV=2
Length = 242
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 122 VSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDP 181
V +GI +D+IL GG P ++V++ + + F+ GL G+P +Y + + P
Sbjct: 5 VKTGIPGMDEILHGGIPERNIVLI-SGGPGTGKTIFSQQFIWNGLQMGEPGIYVALEEHP 63
>sp|Q58392|MTM1_METJA Modification methylase MjaI OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=mjaIM PE=1 SV=1
Length = 303
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 152 PHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGT--LPSPASLKHD--------KSRD 201
P+H ++ NF G V +L+ PS P FLG+ LP A + D K +
Sbjct: 121 PNHSKIIENFEKIGFVTLPYILWKKPSNKPNAFLGSGFLPPNAYVTLDVEYILIFRKGKP 180
Query: 202 RESEQEKGLRIAWQYKK 218
R+ + + LR A Y K
Sbjct: 181 RKFKPKDPLRYASAYTK 197
>sp|Q22639|VPS54_CAEEL Vacuolar protein sorting-associated protein 54 OS=Caenorhabditis
elegans GN=vps-54 PE=1 SV=2
Length = 1058
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 313 EMLSFIKS-LKGMVRS---SNAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKE 368
E++ +KS ++ ++++ +N V + F PSL L R AD L +V A+ DE+
Sbjct: 503 EIIEGVKSVMRQVIKNQILNNGVDLNDFDPSLTQLGEPVRRMKHADFLKTVKAVMDEEFY 562
Query: 369 LAKLLSGYQDMV 380
K L QD++
Sbjct: 563 FCKRLEALQDIL 574
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,058,246
Number of Sequences: 539616
Number of extensions: 6640680
Number of successful extensions: 16495
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 16460
Number of HSP's gapped (non-prelim): 36
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)