Query 013117
Match_columns 449
No_of_seqs 201 out of 513
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_A Elongator complex prote 100.0 1.1E-73 3.9E-78 578.6 25.1 304 107-427 5-359 (361)
2 3bs4_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 166.9 16.3 216 121-390 2-231 (260)
3 2zts_A Putative uncharacterize 99.8 4.6E-18 1.6E-22 160.6 15.5 232 119-416 9-244 (251)
4 2dr3_A UPF0273 protein PH0284; 99.6 1.3E-13 4.3E-18 130.0 21.6 232 120-418 3-235 (247)
5 2cvh_A DNA repair and recombin 99.4 8.4E-12 2.9E-16 115.5 17.7 206 121-415 1-217 (220)
6 3cmu_A Protein RECA, recombina 99.4 2.1E-12 7.2E-17 154.0 13.8 171 119-362 12-203 (2050)
7 2i1q_A DNA repair and recombin 99.4 2.3E-12 7.8E-17 128.2 10.9 178 119-362 77-291 (322)
8 2z43_A DNA repair and recombin 99.3 4.2E-12 1.4E-16 126.9 11.3 207 119-410 86-316 (324)
9 2w0m_A SSO2452; RECA, SSPF, un 99.3 1.9E-10 6.6E-15 106.7 20.9 225 120-417 3-230 (235)
10 1v5w_A DMC1, meiotic recombina 99.3 8.5E-12 2.9E-16 125.9 11.4 212 119-415 101-339 (343)
11 3bh0_A DNAB-like replicative h 99.3 3.1E-11 1.1E-15 120.3 14.9 203 119-362 48-266 (315)
12 1xp8_A RECA protein, recombina 99.3 3.8E-11 1.3E-15 122.6 15.5 172 119-363 52-244 (366)
13 1n0w_A DNA repair protein RAD5 99.3 1.8E-11 6.2E-16 115.0 11.9 205 119-409 3-234 (243)
14 1u94_A RECA protein, recombina 99.3 2.3E-11 7.9E-16 123.7 12.9 171 119-362 41-232 (356)
15 2zr9_A Protein RECA, recombina 99.3 4.6E-11 1.6E-15 121.1 14.4 172 118-362 38-230 (349)
16 3hr8_A Protein RECA; alpha and 99.2 1.2E-10 4.1E-15 118.5 16.9 171 119-362 39-230 (356)
17 2ehv_A Hypothetical protein PH 99.2 3.3E-10 1.1E-14 106.7 18.3 233 119-417 9-245 (251)
18 3lda_A DNA repair protein RAD5 99.2 1.6E-10 5.3E-15 119.4 17.1 209 119-414 157-392 (400)
19 1q57_A DNA primase/helicase; d 99.2 3.9E-11 1.3E-15 126.6 11.0 217 119-388 221-458 (503)
20 3cmw_A Protein RECA, recombina 99.1 2.2E-10 7.4E-15 135.5 14.3 170 119-361 361-551 (1706)
21 3io5_A Recombination and repai 99.1 1.7E-10 5.8E-15 115.6 11.3 170 119-362 4-201 (333)
22 3bgw_A DNAB-like replicative h 99.1 2.7E-10 9.1E-15 119.1 12.6 203 119-362 177-395 (444)
23 3cmu_A Protein RECA, recombina 99.1 5.2E-10 1.8E-14 133.7 15.3 171 119-362 1059-1250(2050)
24 3cmw_A Protein RECA, recombina 99.1 4.2E-10 1.4E-14 133.1 14.3 171 119-362 12-203 (1706)
25 1tf7_A KAIC; homohexamer, hexa 99.1 3.6E-09 1.2E-13 112.3 20.2 220 118-418 259-481 (525)
26 2q6t_A DNAB replication FORK h 99.0 8E-10 2.7E-14 115.0 11.6 201 119-362 180-398 (444)
27 1pzn_A RAD51, DNA repair and r 98.9 6.5E-09 2.2E-13 105.2 14.0 184 119-361 110-317 (349)
28 2r6a_A DNAB helicase, replicat 98.9 3E-09 1E-13 111.0 11.6 198 119-362 183-399 (454)
29 1nlf_A Regulatory protein REPA 98.8 3E-09 1E-13 103.4 6.8 188 117-364 8-214 (279)
30 4a1f_A DNAB helicase, replicat 98.8 9.9E-09 3.4E-13 103.7 9.2 200 119-361 26-240 (338)
31 4a74_A DNA repair and recombin 98.7 5.5E-08 1.9E-12 90.2 11.2 195 119-389 4-213 (231)
32 1tf7_A KAIC; homohexamer, hexa 98.7 2.8E-07 9.6E-12 97.8 17.3 68 117-185 16-84 (525)
33 2vhj_A Ntpase P4, P4; non- hyd 98.4 2.9E-07 1E-11 92.4 6.6 52 121-177 105-156 (331)
34 1cr0_A DNA primase/helicase; R 98.3 8.8E-06 3E-10 79.2 15.4 67 119-187 14-82 (296)
35 2b8t_A Thymidine kinase; deoxy 81.5 10 0.00035 35.3 10.7 41 139-180 11-51 (223)
36 4a8j_C Elongator complex prote 73.6 18 0.00061 35.1 10.0 105 293-410 151-272 (280)
37 1oft_A SULA, hypothetical prot 54.8 14 0.00049 32.9 4.9 58 118-177 21-83 (161)
38 1b22_A DNA repair protein RAD5 44.1 4.8 0.00016 33.9 0.0 16 119-134 99-114 (114)
39 3bos_A Putative DNA replicatio 39.2 41 0.0014 29.6 5.6 49 126-177 40-88 (242)
40 4a8j_B Elongator complex prote 37.7 65 0.0022 30.9 6.7 80 293-382 102-197 (270)
41 1j8m_F SRP54, signal recogniti 29.0 48 0.0017 31.8 4.5 59 119-178 70-135 (297)
42 1ihu_A Arsenical pump-driving 24.8 65 0.0022 33.7 4.8 51 127-178 313-364 (589)
43 3ec2_A DNA replication protein 24.3 42 0.0014 28.8 2.8 41 136-177 34-75 (180)
No 1
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=100.00 E-value=1.1e-73 Score=578.57 Aligned_cols=304 Identities=22% Similarity=0.336 Sum_probs=225.6
Q ss_pred CCCCCcccCC-CCCeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc--------------CC
Q 013117 107 SQTPGVKCGP-NGTMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH--------------GQ 170 (449)
Q Consensus 107 ~~~~GtRpsp-~g~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~--------------g~ 170 (449)
.++||||||| |||++|||||++||++|| ||||+|+++|||||++++|+++|+|||+|||+++ +|
T Consensus 5 ~~~pG~RpSp~~~~~~~stG~~~lD~llghgGlp~g~~~li~e~~~t~~~~~Ll~~f~aeG~~~~~~~~~~~~~~~~~~~ 84 (361)
T 4a8j_A 5 SSHVGVRPSPATSQPTTSTGSADLDSILGHMGLPLGNSVLVEEQSTTEFHSILGKLFAAQGIVHNRISDSSADKTRNGDT 84 (361)
T ss_dssp TTCTTEEECTTTCCEEECCSCHHHHHHTTSSSEETTCEEEEEECSSCCTHHHHHHHHHHHHHHHHHC--------CCCCE
T ss_pred ccCCccccCCCCCCeeeccCCccHHHHhccCCccCCcEEEEeCCCCCcHHHHHHHHHHHHhHhhCCccccccccccCCCc
Confidence 3789999998 789999999999999999 9999999999999999999999999999999998 57
Q ss_pred cEEEEcCCCChhhHhhcCCCCCC--cccccccc------------------cchhhccccEEEeeccccccCCCCC----
Q 013117 171 PLLYASPSKDPRGFLGTLPSPAS--LKHDKSRD------------------RESEQEKGLRIAWQYKKYMGENQPN---- 226 (449)
Q Consensus 171 ~vl~vs~~e~p~~il~~LP~~~~--~~~~k~~~------------------~~~~~~~~mKIAWRY~~~~~~~~~~---- 226 (449)
++++++. +++|+++||+++. .+++|+.. .+...+++|||||||+.+.+. +..
T Consensus 85 h~~vvg~---~~~~~~~LP~~~~~s~~~~k~~~~~e~e~k~~v~nl~~~~~~~~~~~~~mKIAWRY~~~~~~-~s~~~~~ 160 (361)
T 4a8j_A 85 HVIVLSL---NQMFAKELPGIYKGSRKQMKKNLISEEESKVTVQNLNETQRSTPSRYKDLKIAWKYKLADEK-RLGSPDR 160 (361)
T ss_dssp EEEEECS---CGGGGGGCCEEC----------------------------------------------------------
T ss_pred eEEEecC---cHHHHHhCCccccCcccccccccccchhhcccccccccccccCCCCCCCceEEEecCCCCcc-Ccccccc
Confidence 7777874 6899999999874 23332210 112346789999999987532 211
Q ss_pred -CCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccc
Q 013117 227 -FDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQC 305 (449)
Q Consensus 227 -~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~ 305 (449)
.+.....++.|||+|||||+|.++ ...++++|+++. .+|..++..|.++|++ ++++|+||||+||+||.|
T Consensus 161 ~~~~~~~~~~~f~H~FDLtkrl~~~-~~~~~i~~~~~~--~~y~~lL~~I~~~i~~------~~~~ilRIvI~SLgSP~w 231 (361)
T 4a8j_A 161 DDIQQNSEYKDYNHQFDITTRLMPA-PIASELTFIAPT--QPVSTILSQIEQTIKR------NDKKLIRIVIPSLLHPAM 231 (361)
T ss_dssp --------CTTSSCCEETTSCCSSC-CCTTTEEEECTT--SCHHHHHHHHHHHHHH------TTTSEEEEEETTTTCTTT
T ss_pred cccccccCCcCCCcccccccccCCc-cccCcceeecCc--chHHHHHHHHHHHHhc------CCCceEEEEecCCCCccc
Confidence 111234567899999999999875 345678887653 4788888888887774 257899999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHhhhhc--CcEEEEeeCCCCCCcchhhhhhhhcceEEEEEeeCCCcHH-HhhhccCCCC--
Q 013117 306 EHSN--MDWEMLSFIKSLKGMVRSS--NAVVVITFPPSLLSLSSTKRWQHMADTLLSVAAIPDEDKE-LAKLLSGYQD-- 378 (449)
Q Consensus 306 ~~~~--~~~~ll~FL~~LR~llR~s--~~taliT~p~~l~~~~~~~~le~laDgVI~L~~f~~~~~e-~~~~~~~yk~-- 378 (449)
|.++ .++++++|||.||+|+|++ ++|||||+|+++|++.+..+++++||+||+|++|++++.+ +++. |++
T Consensus 232 y~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l~~rle~l~D~vi~L~pF~~~~~~~~~~~---yk~~p 308 (361)
T 4a8j_A 232 YPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLLVLLRNMFDSVINLEPFNQEMTEFLERV---YKSQP 308 (361)
T ss_dssp SCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHHHHHHHHHCSEEEEEEECCHHHHHHHHHH---TTTCG
T ss_pred CCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHHHHHHHHhCcEEEEeeecCCchhhhcccc---cccCc
Confidence 8765 5789999999999999986 6799999999999997788999999999999999874333 3444 555
Q ss_pred ---cceeEEEeeecccccCCcccccCceeeEEEcceeceEEeeccCCCCCCC
Q 013117 379 ---MVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLECLNQAPVDGS 427 (449)
Q Consensus 379 ---~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE~lhLpP~d~~ 427 (449)
|||||||||||++|+++++.....|||||++||| |+||+|||||+|++
T Consensus 309 ~~~~~GLl~V~KLP~l~~~g~~~~~~~dlaFKl~Rkk-f~IE~~hLPPe~~~ 359 (361)
T 4a8j_A 309 GKIQHGLVHILKLPVFTDRGEMRVLKSEWAFKNGRKK-FEIEQWGIPVDDAE 359 (361)
T ss_dssp GGCCCEEEEEEECTTHHHHTCCCCEEEEEEEEECSSC-EEEEEC--------
T ss_pred ccccceEEEEEecccccccCCCCCCccceEEEeccee-EEEEEeccCCcCCC
Confidence 8999999999999999998888889999998665 99999999998765
No 2
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.77 E-value=3.7e-18 Score=166.88 Aligned_cols=216 Identities=14% Similarity=0.056 Sum_probs=131.7
Q ss_pred EeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCccccccc
Q 013117 121 FVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKSR 200 (449)
Q Consensus 121 ~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k~~ 200 (449)
.+||||++||++||||||.||++||.++++++ +++|..||+++|+.+|++++|++++|.++++++++-+.
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~-~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~--------- 71 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSR-GKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRF--------- 71 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGC-HHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHT---------
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCcc-HHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHc---------
Confidence 47999999999999999999999999777776 56999999999999999999999999999999985333
Q ss_pred ccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHHHH
Q 013117 201 DRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFLA 280 (449)
Q Consensus 201 ~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~L~ 280 (449)
.|.++.+.++++..+ .+.|...|+.-.. .+ .+ +.....-+..++...+.++++
T Consensus 72 ------------G~dl~~~~~~g~l~i------~d~~~~~~~~~~~-~~------~v--~~~~~e~d~~~l~~~i~~iv~ 124 (260)
T 3bs4_A 72 ------------GVDVIKYLENHRLAI------VDTFGSFHGIKAT-MP------GV--WYLEGMLSSETLPIKYAKAVE 124 (260)
T ss_dssp ------------TCCHHHHHHTTSEEE------ECHHHHHHTC----CT------TE--ECCCSCCCTTTHHHHHHHHHH
T ss_pred ------------CCCHHHHhhCCcEEE------EEccccccccccc-cc------ce--ecccccCCHHHHHHHHHHHHH
Confidence 344433322111000 0000000100000 00 00 000000112233333334444
Q ss_pred Hh-----hhccCCCCceeEE--EEcCCCcccccCCCCHHHHHHHHHHHHHh-------hhhcCcEEEEeeCCCCCCcchh
Q 013117 281 QH-----QRNDGSSALAGRI--AIQSLCAPQCEHSNMDWEMLSFIKSLKGM-------VRSSNAVVVITFPPSLLSLSST 346 (449)
Q Consensus 281 ~~-----~~~~~~~~~v~RI--vIdSL~Sp~~~~~~~~~~ll~FL~~LR~l-------lR~s~~taliT~p~~l~~~~~~ 346 (449)
.. ..+ ..+..|+ +||+|.+..... .+...++|+..+.+. .+..++|++++.. +.......
T Consensus 125 ~~~~~~~i~~---~~~~~rvv~vidsldsl~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~~~~~~~ 198 (260)
T 3bs4_A 125 DHKKVWMDLN---LFEGRELYGFAISMSGYLEVF--TPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GVKDKRVL 198 (260)
T ss_dssp HHHHHHHHTT---CSTTCCEEEEEETGGGGGGTS--CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SCSCHHHH
T ss_pred hhccccchhh---ccCCceEEEEEeecchHHHHh--ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CCcccccc
Confidence 31 111 0123353 677776654322 356677887777766 3337888888877 65554444
Q ss_pred hhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecc
Q 013117 347 KRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVAR 390 (449)
Q Consensus 347 ~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~ 390 (449)
..+.++||+||.|+.+..+ . ....-|.|.|+..
T Consensus 199 ~~l~~laD~VI~lr~~e~~-g----------~~rR~L~V~K~Rg 231 (260)
T 3bs4_A 199 LSVYRRADYVLKTRSSLGE-N----------GIKRELLVIKTPK 231 (260)
T ss_dssp HHHHHHCSEEEEEEEEEET-T----------EEEEEEEEEECCC
T ss_pred cceEEEeeEEEEEEEEecC-C----------ceEEEEEEEECCC
Confidence 5678899999999998543 1 1247788999843
No 3
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.77 E-value=4.6e-18 Score=160.64 Aligned_cols=232 Identities=14% Similarity=0.180 Sum_probs=147.2
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc-CCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH-GQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~-g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
..++|||+++||++|+||||.|++++|.+++++| +++|+.+|+++++.+ +++++|+++++.++++.+.+-+...+.+
T Consensus 9 i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~G-KT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~- 86 (251)
T 2zts_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTG-KTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE- 86 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSS-HHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH-
T ss_pred CCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChH-
Confidence 5789999999999999999999999999998887 578889999998765 8899999999999999887644332210
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
....++.+.+.-.+..... . .....++ .....+...+.+.+..
T Consensus 87 -----~~~~~~~~~~~d~~~~~~~--~-----------~~~~~~~-------------------~~~~~~~~~~~~~~~~ 129 (251)
T 2zts_A 87 -----KYEKEGKIAIVDGVSSVVG--L-----------PSEEKFV-------------------LEDRFNVDNFLRYIYR 129 (251)
T ss_dssp -----HHHHTTSEEEEC---------------------------------------------------CCHHHHHHHHHH
T ss_pred -----HHHhcCcchhhhhHHHHhh--c-----------ccchhcc-------------------ccccccHHHHHHHHHH
Confidence 0111122222111110000 0 0000000 0011123444444444
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCCc-ch--hhhhhhhcc
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSL-SS--TKRWQHMAD 354 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~~-~~--~~~le~laD 354 (449)
.++. .++.+|+||++....... +....+.++++.|+.+++..+++++++....-... .. ...++++||
T Consensus 130 ~~~~--------~~~~~vviD~~~~l~~~~-~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD 200 (251)
T 2zts_A 130 VVKA--------INAKRLVIDSIPSIALRL-EEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIAR 200 (251)
T ss_dssp HHHH--------TTCSEEEEECHHHHHHHS-SSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCS
T ss_pred HHHh--------cCCcEEEEEcHHHHhhhc-cChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEee
Confidence 4432 356899999997654322 23567889999999999999999999987542111 11 245789999
Q ss_pred eEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceEE
Q 013117 355 TLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVL 416 (449)
Q Consensus 355 gVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vI 416 (449)
+||.|+.... +.+....++|.|.- -. + ++...+.|++.. +++.|
T Consensus 201 ~vi~l~~~~~-----------~~~~~R~l~I~K~R-~~---~--~~~~~~~f~It~-~Gi~v 244 (251)
T 2zts_A 201 GVIVLDLQEK-----------NIELKRYVLIRKMR-ET---R--HSMKKYPFEIGP-NGIVV 244 (251)
T ss_dssp EEEEEEEEEC-----------SSSEEEEEEEEEET-TC---C--CCCBEEEEEEET-TEEEE
T ss_pred EEEEEEEEec-----------CCeEEEEEEEEEcC-CC---C--CCCEEEEEEEeC-CcEEE
Confidence 9999987433 22345678999972 11 1 244567899874 46654
No 4
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.59 E-value=1.3e-13 Score=129.96 Aligned_cols=232 Identities=15% Similarity=0.174 Sum_probs=143.9
Q ss_pred eEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccccc
Q 013117 120 MFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKS 199 (449)
Q Consensus 120 ~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k~ 199 (449)
.+++||+++||++|+||+|.|++++|.+++++| +++|+.+++++++.+|++++|++.++.++++.+.+-....+.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsG-KTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~---- 77 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTG-KTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDV---- 77 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSS-HHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCC----
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCC-HHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCH----
Confidence 478999999999999999999999999999888 578889999999999999999999888887776542222110
Q ss_pred cccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHHH
Q 013117 200 RDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFL 279 (449)
Q Consensus 200 ~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~L 279 (449)
.+....+.+.+...|....+. . .... . + ......+...+.+.+.+.+
T Consensus 78 --~~~~~~~~l~~~~~~~~~~~~-----------------~----~~~~--------~-~-~~~~~~~~~~~~~~i~~~~ 124 (247)
T 2dr3_A 78 --KPYEEKGMFAMVDAFTAGIGK-----------------S----KEYE--------K-Y-IVHDLTDIREFIEVLRQAI 124 (247)
T ss_dssp --HHHHHHTSEEEEECSTTTTCC-----------------------CCC--------S-C-BCSCCSSHHHHHHHHHHHH
T ss_pred --HHHhhCCcEEEEecchhhccc-----------------c----cccc--------c-c-cccCccCHHHHHHHHHHHH
Confidence 001112234443222211100 0 0000 0 0 0001112344554454554
Q ss_pred HHhhhccCCCCceeEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCCcch-hhhhhhhcceEEE
Q 013117 280 AQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSS-TKRWQHMADTLLS 358 (449)
Q Consensus 280 ~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~~~~-~~~le~laDgVI~ 358 (449)
++ .++.+|+||++..... . +.....+++..|+.++++.+++++++.+.....+.. ...+++.+|+||.
T Consensus 125 ~~--------~~~~~vviD~~~~l~~--~-~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~ 193 (247)
T 2dr3_A 125 RD--------INAKRVVVDSVTTLYI--N-KPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIR 193 (247)
T ss_dssp HH--------HTCCEEEEETSGGGTT--T-CGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEE
T ss_pred HH--------hCCCEEEECCchHhhc--C-CHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEE
Confidence 42 2467999999987642 1 234567888999999988899888887654321111 1247889999999
Q ss_pred EEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceEEee
Q 013117 359 VAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLEC 418 (449)
Q Consensus 359 L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE~ 418 (449)
|+.... +......++|.|...-. +....+.|.+.. .++.+.+
T Consensus 194 L~~~~~-----------~~~~~r~l~v~K~R~~~------~~~~~~~f~i~~-~Gi~~~~ 235 (247)
T 2dr3_A 194 LDLDEI-----------DGELKRSLIVWKMRGTS------HSMRRHPFDITD-KGIIVYP 235 (247)
T ss_dssp EEEEEE-----------TTEEEEEEEEEEETTSC------CCCBCEEEEEET-TEEEECT
T ss_pred EEEEcc-----------CCeeEEEEEEEECCCCC------CCCceEEEEEcC-CCEEEec
Confidence 987532 11234678888873221 123457888864 4665543
No 5
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.40 E-value=8.4e-12 Score=115.54 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=126.3
Q ss_pred EeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCC--ChhhHhhcCCCCCCccccc
Q 013117 121 FVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSK--DPRGFLGTLPSPASLKHDK 198 (449)
Q Consensus 121 ~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e--~p~~il~~LP~~~~~~~~k 198 (449)
+++||+++||.+|+||+|.|++++|.+.+++| +++|++++++ ..+++++|++.++ .++.|.+.+-...
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsG-KTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~------ 70 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASG-KTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRG------ 70 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSS-HHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTT------
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCC-HHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcC------
Confidence 47999999999999999999999999998888 5788899988 6789999999876 4544443210000
Q ss_pred ccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHH
Q 013117 199 SRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF 278 (449)
Q Consensus 199 ~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~ 278 (449)
|..+.+. .++.... ..+.......+ +.
T Consensus 71 ---------------~~~~~~~----------------------------------~~~~~~~---~~~~~~~~~~~-~~ 97 (220)
T 2cvh_A 71 ---------------LNPEEAL----------------------------------SRFILFT---PSDFKEQRRVI-GS 97 (220)
T ss_dssp ---------------CCHHHHH----------------------------------HHEEEEC---CTTTSHHHHHH-HH
T ss_pred ---------------CChHHHh----------------------------------hcEEEEe---cCCHHHHHHHH-HH
Confidence 0000000 0000000 00111111111 12
Q ss_pred HHHhhhccCCCCceeEEEEcCCCcccccCC---CCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC------Ccchhhhh
Q 013117 279 LAQHQRNDGSSALAGRIAIQSLCAPQCEHS---NMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLL------SLSSTKRW 349 (449)
Q Consensus 279 L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~---~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~------~~~~~~~l 349 (449)
+..+.. .++..|+||++.+...... +...++..++..|+.+.++.+++++++.+..-. .+.....|
T Consensus 98 ~~~l~~-----~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~ 172 (220)
T 2cvh_A 98 LKKTVD-----SNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL 172 (220)
T ss_dssp HHHHCC-----TTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred HHHHhh-----cCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence 222211 1478999999987643211 123678899999999999889888888764321 11122468
Q ss_pred hhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceE
Q 013117 350 QHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLV 415 (449)
Q Consensus 350 e~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~v 415 (449)
+++||.||.|+..... -...++|.|.... .....+.|.+.. .++.
T Consensus 173 ~~~~d~vi~l~~~~~~-------------~~r~l~v~K~r~~-------~~~~~~~f~I~~-~Gi~ 217 (220)
T 2cvh_A 173 GYRCKDILRLDKLPKP-------------GLRVAVLERHRFR-------PEGLMAYFRITE-RGIE 217 (220)
T ss_dssp HHTSSEEEEEEECSST-------------TEEEEEEEECSSS-------CTTCEEEEEEET-TEEE
T ss_pred eecCcEEEEEEEecCC-------------CEEEEEEEeCCCC-------CCCceEEEEEeC-Ccee
Confidence 9999999999885421 1356788887321 122336788753 4544
No 6
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.37 E-value=2.1e-12 Score=154.01 Aligned_cols=171 Identities=16% Similarity=0.228 Sum_probs=120.9
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
..++||||++||++|+ ||||.|++++|.+++++| +++|+.+|+++++.+|++|+|+++++.+..+..+.
T Consensus 12 ~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsG-KT~lalq~a~~~~~~Ge~vlYI~tEes~~~~ra~~--------- 81 (2050)
T 3cmu_A 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG-KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK--------- 81 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSS-HHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHH---------
T ss_pred CCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCC-HHHHHHHHHHHhhccCCceEEEEccCcchhhHHhh---------
Confidence 4689999999999999 999999999999999888 57888999999999999999999988776655320
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
+.|...++. .++ ....+.+. +
T Consensus 82 --------------lG~dl~~i~-------------------v~~----------------------p~~~e~ll----~ 102 (2050)
T 3cmu_A 82 --------------LGVDIDNLL-------------------CSQ----------------------PDTGEQAL----E 102 (2050)
T ss_dssp --------------TTCCTTTCE-------------------EEC----------------------CSSHHHHH----H
T ss_pred --------------hccCcccce-------------------ecC----------------------CCcHHHHH----H
Confidence 112221110 000 00112222 3
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccC--------CCC---HHHHHHHHHHHHHhhhhcCcEEEEeeCCC-----CC
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEH--------SNM---DWEMLSFIKSLKGMVRSSNAVVVITFPPS-----LL 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~--------~~~---~~~ll~FL~~LR~llR~s~~taliT~p~~-----l~ 341 (449)
++..+.+. .++.||||||++.+.... .+. .+.+.+|++.|+.+++..++++++|.... .+
T Consensus 103 il~~L~~~----~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~f 178 (2050)
T 3cmu_A 103 ICDALARS----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178 (2050)
T ss_dssp HHHHHHHH----TCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHhc----cCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEEeccccccccc
Confidence 33333321 357899999999874321 010 13578999999999999999999998652 22
Q ss_pred Cc----chhhhhhhhcceEEEEEee
Q 013117 342 SL----SSTKRWQHMADTLLSVAAI 362 (449)
Q Consensus 342 ~~----~~~~~le~laDgVI~L~~f 362 (449)
.+ .....|+|++|++|.|+..
T Consensus 179 g~~~~~~gG~~l~~iaD~VI~L~r~ 203 (2050)
T 3cmu_A 179 GNPETTTGGNALKFYASVRLDIRRI 203 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred CcccccCCcchhhhhCcEEEEEEec
Confidence 22 1246789999999999864
No 7
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.35 E-value=2.3e-12 Score=128.17 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=115.1
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhh------------hcC----CcEEEEcCCCC--
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGL------------VHG----QPLLYASPSKD-- 180 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl------------~~g----~~vl~vs~~e~-- 180 (449)
...++||+++||.+||||||.|++++|.++.++| +++|+.+++++.. .+| .+++|+++++.
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsG-KT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~ 155 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSG-KTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR 155 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSS-HHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCC-HHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC
Confidence 4689999999999999999999999999998887 5788899998743 345 79999999875
Q ss_pred hhhHhhcCCCCCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeee
Q 013117 181 PRGFLGTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCV 260 (449)
Q Consensus 181 p~~il~~LP~~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~ 260 (449)
++++.+.+-. +.|..+.+. | ++.+.
T Consensus 156 ~~~l~~~~~~---------------------~g~~~~~~~---------------------~-------------~l~~~ 180 (322)
T 2i1q_A 156 PERIMQMAEH---------------------AGIDGQTVL---------------------D-------------NTFVA 180 (322)
T ss_dssp HHHHHHHHHH---------------------HTCCHHHHH---------------------H-------------TEEEE
T ss_pred HHHHHHHHHH---------------------cCCCHHHHh---------------------c-------------CEEEE
Confidence 6666543200 111111100 0 01000
Q ss_pred eccCCcchH---HHHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCC----C---CHHHHHHHHHHHHHhhhhcCc
Q 013117 261 GIQHSKNLA---ALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHS----N---MDWEMLSFIKSLKGMVRSSNA 330 (449)
Q Consensus 261 ~~~~~~~~~---~l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~----~---~~~~ll~FL~~LR~llR~s~~ 330 (449)
. ..+.+ .+.+.+.+.+++ ..++..|+|||+........ + ....+.+|++.|+.+.+..++
T Consensus 181 ~---~~~~~~~~~~l~~l~~~~~~-------~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 181 R---AYNSDMQMLFAEKIEDLIQE-------GNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp E---CSSHHHHHHHHHTHHHHHHT-------TCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred e---CCCHHHHHHHHHHHHHHHhh-------ccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 01112 222222233321 13689999999997643211 1 123689999999999999999
Q ss_pred EEEEeeCCCC-----C-C---cchhhhhhhhcceEEEEEee
Q 013117 331 VVVITFPPSL-----L-S---LSSTKRWQHMADTLLSVAAI 362 (449)
Q Consensus 331 taliT~p~~l-----~-~---~~~~~~le~laDgVI~L~~f 362 (449)
+++++..... + + +.....|+|.+|.+|.|+..
T Consensus 251 ~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 251 VVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp EEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred EEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 9999875432 1 1 11134689999999999863
No 8
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.33 E-value=4.2e-12 Score=126.88 Aligned_cols=207 Identities=11% Similarity=0.133 Sum_probs=122.1
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc------CCcEEEEcCCCC--hhhHhhcCCC
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH------GQPLLYASPSKD--PRGFLGTLPS 190 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~------g~~vl~vs~~e~--p~~il~~LP~ 190 (449)
...++||+++||.+||||||.|++++|.++.++| +++|+.+++++.... +.+++|+++++. ++++.+.+-.
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsG-KT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSG-KTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSS-HHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCC-HhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999998887 578889999987665 789999999765 5655443100
Q ss_pred CCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHH
Q 013117 191 PASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAA 270 (449)
Q Consensus 191 ~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~ 270 (449)
+.|..+.+. .++.+....+......
T Consensus 165 ---------------------~g~~~~~~~----------------------------------~~l~~~~~~~~~~~~~ 189 (324)
T 2z43_A 165 ---------------------LGLDIDNVM----------------------------------NNIYYIRAINTDHQIA 189 (324)
T ss_dssp ---------------------TTCCHHHHH----------------------------------HTEEEEECCSHHHHHH
T ss_pred ---------------------hCCCHHHHh----------------------------------ccEEEEeCCCHHHHHH
Confidence 001111000 0011000000000112
Q ss_pred HHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCC----C--C-HHHHHHHHHHHHHhhhhcCcEEEEeeCCCC---
Q 013117 271 LQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHS----N--M-DWEMLSFIKSLKGMVRSSNAVVVITFPPSL--- 340 (449)
Q Consensus 271 l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~----~--~-~~~ll~FL~~LR~llR~s~~taliT~p~~l--- 340 (449)
+.+.+..++++ ..++..|+|||+........ + . ...+.+|++.|+.+.+..+++++++.....
T Consensus 190 ~l~~l~~~~~~-------~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 262 (324)
T 2z43_A 190 IVDDLQELVSK-------DPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPD 262 (324)
T ss_dssp HHHHHHHHHHH-------CTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-----
T ss_pred HHHHHHHHHHh-------ccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCC
Confidence 23233333331 03589999999998753211 1 0 135899999999999999999999875432
Q ss_pred --C-C---cchhhhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcc
Q 013117 341 --L-S---LSSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQK 410 (449)
Q Consensus 341 --~-~---~~~~~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~r 410 (449)
+ + +.....|+|.+|.+|.|+...+ ....++|.|-+.. ......|.+..
T Consensus 263 ~~~~~~~~~~gg~~l~~~~d~~l~l~r~~~--------------~~r~~~v~k~~~~--------p~~~~~f~I~~ 316 (324)
T 2z43_A 263 MFYGDPTVAVGGHTLYHVPGIRIQLKKSRG--------------NRRIARVVDAPHL--------PEGEVVFALTE 316 (324)
T ss_dssp -------------------CEEEEEEECST--------------TEEEEEEEECSSS--------CCEEEEEEEET
T ss_pred CcCCCCCCCCchHHHHhhCcEEEEEEEcCC--------------CeEEEEEEECCCC--------CceEEEEEEeC
Confidence 1 1 1112468999999999986432 1246788885321 12345677753
No 9
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.31 E-value=1.9e-10 Score=106.66 Aligned_cols=225 Identities=17% Similarity=0.213 Sum_probs=133.7
Q ss_pred eEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccccc
Q 013117 120 MFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDKS 199 (449)
Q Consensus 120 ~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k~ 199 (449)
.+++||++.||++++||++.|.+++|.++.++| +++|+++++.....++.+++|++.+..++++...+-......+
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsG-KTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTG-KTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFE--- 78 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSS-HHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCG---
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCC-HHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHH---
Confidence 478999999999999999999999999988887 5788899998888888999999987776665554211111000
Q ss_pred cccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHHH
Q 013117 200 RDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASFL 279 (449)
Q Consensus 200 ~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~L 279 (449)
... ...+.+...+... ++ .. ++ .. ..+...+.+.+.+.+
T Consensus 79 ---~~~-~~~~~~~~~~~~~---------------------~~------~~--------~~-~~-~~~~~~~~~~~~~~~ 117 (235)
T 2w0m_A 79 ---EYI-EKKLIIIDALMKE---------------------KE------DQ--------WS-LV-NLTPEELVNKVIEAK 117 (235)
T ss_dssp ---GGB-TTTEEEEECCC-------------------------------CT--------TB-CS-SCCHHHHHHHHHHHH
T ss_pred ---HHh-hCCEEEEeccccc---------------------cC------ce--------ee-ec-CCCHHHHHHHHHHHH
Confidence 000 0011111111100 00 00 00 00 012334443333333
Q ss_pred HHhhhccCCCCcee--EEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCCc-chhhhhhhhcceE
Q 013117 280 AQHQRNDGSSALAG--RIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSL-SSTKRWQHMADTL 356 (449)
Q Consensus 280 ~~~~~~~~~~~~v~--RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~~-~~~~~le~laDgV 356 (449)
.. .++. .|+||++.+....+ ......++..|+.+.+..+++++++.+..-... .....++++||.|
T Consensus 118 ~~--------~~~~~~llilDe~~~~~~~d---~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~v 186 (235)
T 2w0m_A 118 QK--------LGYGKARLVIDSVSALFLDK---PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGI 186 (235)
T ss_dssp HH--------HCSSCEEEEEETGGGGSSSC---GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEE
T ss_pred Hh--------hCCCceEEEEECchHhhcCC---HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEE
Confidence 31 2356 99999998763222 345678888888888888988888876431111 1013478999999
Q ss_pred EEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceEEe
Q 013117 357 LSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLE 417 (449)
Q Consensus 357 I~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE 417 (449)
|.|+.-.. ..+....++|.|...-. +....+.|.+..++++.+.
T Consensus 187 i~l~~~~~-----------~~~~~r~l~v~K~r~~~------~~~~~~~f~i~~~~Gi~~~ 230 (235)
T 2w0m_A 187 IRFRRMIR-----------NGELHRYILIEKMRQTD------HDKHVWEIDIVNGKGIVLK 230 (235)
T ss_dssp EEEEEEEE-----------TTEEEEEEEEEEETTCC------CCCSCEEEEEETTTEEEEE
T ss_pred EEEEEEec-----------CCcEEEEEEEEeccCCc------ccceeEEEEEcCCCCeEEe
Confidence 99987432 11235788999973222 1234578888754255553
No 10
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.29 E-value=8.5e-12 Score=125.89 Aligned_cols=212 Identities=11% Similarity=0.156 Sum_probs=130.8
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhh------cCCcEEEEcCCCC--hhhHhhcCCC
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLV------HGQPLLYASPSKD--PRGFLGTLPS 190 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~------~g~~vl~vs~~e~--p~~il~~LP~ 190 (449)
...++||+++||.+||||||.|++++|.++.++| +++|+.+++++.+. .+.+++|+++++. ++++...+-.
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsG-KTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTG-KTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCT-HHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCC-HHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999999988887 57888999998776 5789999998774 5555443100
Q ss_pred CCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHH
Q 013117 191 PASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAA 270 (449)
Q Consensus 191 ~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~ 270 (449)
+.|..+.+. + ++.+....+......
T Consensus 180 ---------------------~g~~~~~~l---------------------------~-------~l~~~~~~~~e~~~~ 204 (343)
T 1v5w_A 180 ---------------------FNVDHDAVL---------------------------D-------NVLYARAYTSEHQME 204 (343)
T ss_dssp ---------------------TTCCHHHHH---------------------------H-------TEEEEECCSTTHHHH
T ss_pred ---------------------cCCCHHHHH---------------------------h-------ceeEeecCCHHHHHH
Confidence 001111000 0 011000000111112
Q ss_pred HHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCC----C-C--HHHHHHHHHHHHHhhhhcCcEEEEeeCCCC---
Q 013117 271 LQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHS----N-M--DWEMLSFIKSLKGMVRSSNAVVVITFPPSL--- 340 (449)
Q Consensus 271 l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~----~-~--~~~ll~FL~~LR~llR~s~~taliT~p~~l--- 340 (449)
+.+.+..++.+. ..++..|+|||+........ + . ...+.++++.|+.+.+..+++++++....-
T Consensus 205 ll~~l~~~i~~~------~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 278 (343)
T 1v5w_A 205 LLDYVAAKFHEE------AGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278 (343)
T ss_dssp HHHHHHHHHHHS------CSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred HHHHHHHHHHhc------CCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCC
Confidence 232333333321 13588999999998653211 1 0 125899999999999999999999876532
Q ss_pred ----C--Ccc---hhhhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcce
Q 013117 341 ----L--SLS---STKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKR 411 (449)
Q Consensus 341 ----~--~~~---~~~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rr 411 (449)
+ ++. ....|+|.+|.+|.|+...+ ....++|.|-+.. + .....|.+..
T Consensus 279 ~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~--------------~~r~~~v~K~r~~-------p-~~~~~f~I~~- 335 (343)
T 1v5w_A 279 ATMTFQADPKKPIGGHILAHASTTRISLRKGRG--------------ELRIAKIYDSPEM-------P-ENEATFAITA- 335 (343)
T ss_dssp --------------CCTTTTSSSEEEEEEESST--------------TEEEEEEEECTTC-------C-SSCEEEEEET-
T ss_pred CccccCCCCCcCCchHHHHHhCCEEEEEEEcCC--------------CEEEEEEEECCCC-------C-CeeEEEEEeC-
Confidence 2 111 12358999999999986321 1357888886432 1 2345788753
Q ss_pred eceE
Q 013117 412 RFLV 415 (449)
Q Consensus 412 r~~v 415 (449)
.++.
T Consensus 336 ~Gi~ 339 (343)
T 1v5w_A 336 GGIG 339 (343)
T ss_dssp TEEE
T ss_pred CCcc
Confidence 3543
No 11
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.29 E-value=3.1e-11 Score=120.26 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=124.1
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCccccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDK 198 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k 198 (449)
...++||+++||+++ |||+.|++++|.+.++.| +++|+.+|+..++.+|++++|+++|++++++...+-+...
T Consensus 48 ~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~G-KTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~----- 120 (315)
T 3bh0_A 48 ITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMG-KTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAG----- 120 (315)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSS-HHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHT-----
T ss_pred CCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCC-HHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHc-----
Confidence 467899999999999 899999999999888887 4678899999999999999999999999888876421100
Q ss_pred ccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHH
Q 013117 199 SRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF 278 (449)
Q Consensus 199 ~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~ 278 (449)
.|.+.++. .+...... ...+.+....+ .+. ...+.... ....+...+...+..+
T Consensus 121 --------------~i~~~~l~-~~~~~l~~--~~~~~l~~a~~---~l~-----~~~i~i~d-~~~~~~~~i~~~i~~l 174 (315)
T 3bh0_A 121 --------------SINAQKIK-AARRDFAS--EDWGKLSMAIG---EIS-----NSNINIFD-KAGQSVNYIWSKTRQT 174 (315)
T ss_dssp --------------TCCHHHHH-SCHHHHCS--SCHHHHHHHHH---HHH-----TSCEEEEC-CSCCBHHHHHHHHHHH
T ss_pred --------------CCCHHHHh-cCCCCCCH--HHHHHHHHHHH---HHh-----CCCEEEEC-CCCCCHHHHHHHHHHH
Confidence 01111110 00000000 00000000000 000 00111110 0112345555444433
Q ss_pred HHHhhhccCCCCcee--EEEEcCCCcccccCC-CC-HHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC--C-----cc---
Q 013117 279 LAQHQRNDGSSALAG--RIAIQSLCAPQCEHS-NM-DWEMLSFIKSLKGMVRSSNAVVVITFPPSLL--S-----LS--- 344 (449)
Q Consensus 279 L~~~~~~~~~~~~v~--RIvIdSL~Sp~~~~~-~~-~~~ll~FL~~LR~llR~s~~taliT~p~~l~--~-----~~--- 344 (449)
++ . .++. +|+||+|........ .. ..++..+++.|+.+.+..+++++++.+.+-- . +.
T Consensus 175 ~~----~----~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~d 246 (315)
T 3bh0_A 175 KR----K----NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSD 246 (315)
T ss_dssp HH----T----SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGG
T ss_pred HH----h----cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHH
Confidence 32 1 3567 999999986542211 12 2578999999999999999999999875411 1 11
Q ss_pred h--hhhhhhhcceEEEEEee
Q 013117 345 S--TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 345 ~--~~~le~laDgVI~L~~f 362 (449)
+ ...+++.||.||.|+..
T Consensus 247 lr~sg~ie~~aD~vi~L~r~ 266 (315)
T 3bh0_A 247 LRESGQLEQDADIIEFLYRD 266 (315)
T ss_dssp GTTTSHHHHHCSEEEEEEEH
T ss_pred hhhhhhhHhhCCEEEEEecc
Confidence 1 13589999999999873
No 12
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.28 E-value=3.8e-11 Score=122.58 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=115.3
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
...++||+++||.+|| ||||.|++++|.+++++| +++|+.+++++....|.+++|++++....++..+-
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsG-KTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~--------- 121 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGG-KTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARA--------- 121 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSS-HHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH---------
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCC-hHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHH---------
Confidence 5689999999999999 999999999999988887 57888999999999999999999976655543210
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
+.|...++ .+. ...+.+.+.+
T Consensus 122 --------------~g~d~~~l--------------------------------------~i~---~~~~~e~~l~---- 142 (366)
T 1xp8_A 122 --------------LGVNTDEL--------------------------------------LVS---QPDNGEQALE---- 142 (366)
T ss_dssp --------------TTCCGGGC--------------------------------------EEE---CCSSHHHHHH----
T ss_pred --------------cCCCHHHc--------------------------------------eee---cCCcHHHHHH----
Confidence 00000000 000 0112333433
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccCC-C----------CHHHHHHHHHHHHHhhhhcCcEEEEeeCCCC-----C
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEHS-N----------MDWEMLSFIKSLKGMVRSSNAVVVITFPPSL-----L 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~-~----------~~~~ll~FL~~LR~llR~s~~taliT~p~~l-----~ 341 (449)
.+.++.+. .++..|+|||+........ + ..+.+.++++.|..+++..+++++++..... |
T Consensus 143 ~l~~l~~~----~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 143 IMELLVRS----GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp HHHHHHTT----TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHhc----CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 23333221 3578999999997642110 0 0135789999999999999999999876532 2
Q ss_pred Cc-ch---hhhhhhhcceEEEEEeeC
Q 013117 342 SL-SS---TKRWQHMADTLLSVAAIP 363 (449)
Q Consensus 342 ~~-~~---~~~le~laDgVI~L~~f~ 363 (449)
.+ .. ...|++.+|.+|.|+-..
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEEES
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 11 11 345899999999998754
No 13
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=1.8e-11 Score=115.00 Aligned_cols=205 Identities=13% Similarity=0.166 Sum_probs=118.5
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhh------cCCcEEEEcCCCC--hhhHhhcCCC
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLV------HGQPLLYASPSKD--PRGFLGTLPS 190 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~------~g~~vl~vs~~e~--p~~il~~LP~ 190 (449)
...++||+++||++|+||+|.|.+++|.++.++| +++|+++++++.+. .++.++|++.++. ++++.+.+-.
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsG-KTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG-KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSS-HHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCc-HHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 4679999999999999999999999999988887 57888999987665 3678999987652 3333221100
Q ss_pred CCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHH
Q 013117 191 PASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAA 270 (449)
Q Consensus 191 ~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~ 270 (449)
+.|..+.+. .++.+...........
T Consensus 82 ---------------------~g~~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 106 (243)
T 1n0w_A 82 ---------------------YGLSGSDVL----------------------------------DNVAYARAFNTDHQTQ 106 (243)
T ss_dssp ---------------------TTCCHHHHH----------------------------------HTEEEEECCSHHHHHH
T ss_pred ---------------------cCCCHHHHh----------------------------------hCeEEEecCCHHHHHH
Confidence 011111000 0000000000000111
Q ss_pred HHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCCC-----C--HHHHHHHHHHHHHhhhhcCcEEEEeeCCCC-CC
Q 013117 271 LQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSN-----M--DWEMLSFIKSLKGMVRSSNAVVVITFPPSL-LS 342 (449)
Q Consensus 271 l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~-----~--~~~ll~FL~~LR~llR~s~~taliT~p~~l-~~ 342 (449)
+.+.+.+.+. . .++..|+||++.+....... . ...+..++..|+.+.+..+++++++.+..- ..
T Consensus 107 ~~~~~~~~~~---~-----~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 107 LLYQASAMMV---E-----SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp HHHHHHHHHH---H-----SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred HHHHHHHHHh---c-----CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 2222222222 1 35789999999876432100 1 113788999999999988999888876321 11
Q ss_pred c-----------chhhhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEc
Q 013117 343 L-----------SSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQ 409 (449)
Q Consensus 343 ~-----------~~~~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~ 409 (449)
. .....|+++||.+|.|+.-.+ ....++|.|.+.. + ...+.|.+.
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~--------------~~r~l~v~K~r~~----~----~~~~~f~I~ 234 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGRG--------------ETRICKIYDSPCL----P----EAEAMFAIN 234 (243)
T ss_dssp ------------------CCTTCEEEEEEECST--------------TEEEEEECCBTTB----S----CEEEEEEEE
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcCC--------------CeEEEEEEECCCC----C----CCeEEEEEe
Confidence 1 112348899999999986221 1247888886322 1 123678875
No 14
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.27 E-value=2.3e-11 Score=123.75 Aligned_cols=171 Identities=16% Similarity=0.272 Sum_probs=112.4
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
...++||+++||.+|| ||||.|++++|.+.+++| +++|+.+++++...+|++++|+++++..+.....
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsG-KTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~---------- 109 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG-KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR---------- 109 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHH----------
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCC-HHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHH----------
Confidence 5789999999999999 999999999999988887 5788899999999999999999987654332211
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
++.|...++ ... ...+...+.+.+..
T Consensus 110 -------------~~g~~~~~l--------------------------------------~i~---~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 110 -------------KLGVDIDNL--------------------------------------LCS---QPDTGEQALEICDA 135 (356)
T ss_dssp -------------HTTCCGGGC--------------------------------------EEE---CCSSHHHHHHHHHH
T ss_pred -------------HcCCChhhe--------------------------------------eee---CCCCHHHHHHHHHH
Confidence 000111110 000 01122333332222
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccCC------C-----CHHHHHHHHHHHHHhhhhcCcEEEEeeCCCC-----C
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEHS------N-----MDWEMLSFIKSLKGMVRSSNAVVVITFPPSL-----L 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~------~-----~~~~ll~FL~~LR~llR~s~~taliT~p~~l-----~ 341 (449)
+++ . .++.+|+||++........ + ..+.+.++++.|..+++..+++++++..... |
T Consensus 136 l~~----~----~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 136 LAR----S----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHH----H----TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHh----c----cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 222 1 3578999999987642100 0 0125789999999999999999999876432 1
Q ss_pred -Ccch---hhhhhhhcceEEEEEee
Q 013117 342 -SLSS---TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 342 -~~~~---~~~le~laDgVI~L~~f 362 (449)
++.. ...|++.+|.+|.|+-.
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~ 232 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRI 232 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEe
Confidence 1111 23589999999988764
No 15
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.26 E-value=4.6e-11 Score=121.10 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=114.1
Q ss_pred CCeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCccc
Q 013117 118 GTMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKH 196 (449)
Q Consensus 118 g~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~ 196 (449)
...++|||+++||.+|| ||||.|++++|.+++++| +++|+.+++++....|.+++|++.++...++..+.
T Consensus 38 ~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsG-KTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~-------- 108 (349)
T 2zr9_A 38 PISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSG-KTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKK-------- 108 (349)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSS-HHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH--------
T ss_pred cCCccccCCHHHHHHhccCCccCCeEEEEECCCCCC-HHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHH--------
Confidence 35789999999999999 999999999999999888 57888999999999999999999865443332110
Q ss_pred ccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHH
Q 013117 197 DKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCA 276 (449)
Q Consensus 197 ~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~ 276 (449)
+.|..++ +... ...+...+.+
T Consensus 109 ---------------lG~~~~~--------------------------------------l~i~---~~~~~e~~l~--- 129 (349)
T 2zr9_A 109 ---------------LGVDTDS--------------------------------------LLVS---QPDTGEQALE--- 129 (349)
T ss_dssp ---------------TTCCGGG--------------------------------------CEEE---CCSSHHHHHH---
T ss_pred ---------------cCCCHHH--------------------------------------eEEe---cCCCHHHHHH---
Confidence 0011110 0000 0112233332
Q ss_pred HHHHHhhhccCCCCceeEEEEcCCCccccc--------CCC---CHHHHHHHHHHHHHhhhhcCcEEEEeeCCCC-----
Q 013117 277 SFLAQHQRNDGSSALAGRIAIQSLCAPQCE--------HSN---MDWEMLSFIKSLKGMVRSSNAVVVITFPPSL----- 340 (449)
Q Consensus 277 ~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~--------~~~---~~~~ll~FL~~LR~llR~s~~taliT~p~~l----- 340 (449)
++..+.+. .++..|+||++...... +.. ..+.+.++++.|..++++.+++++++.+...
T Consensus 130 -~~~~l~~~----~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~ 204 (349)
T 2zr9_A 130 -IADMLVRS----GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVM 204 (349)
T ss_dssp -HHHHHHTT----TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------
T ss_pred -HHHHHHhc----CCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence 22322221 35789999999876421 100 0125789999999999999999998876432
Q ss_pred CCc-c---hhhhhhhhcceEEEEEee
Q 013117 341 LSL-S---STKRWQHMADTLLSVAAI 362 (449)
Q Consensus 341 ~~~-~---~~~~le~laDgVI~L~~f 362 (449)
|.+ . ....|+|+||.+|.|+-.
T Consensus 205 ~~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 205 FGSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp -----CCSSHHHHHHHCSEEEEEEEE
T ss_pred cCCCcccCCchHhhhccceEEEEEEe
Confidence 211 1 124589999999998764
No 16
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.25 E-value=1.2e-10 Score=118.52 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=115.4
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
..++|||+++||.+|| ||+|.|++++|.++.++| +++|+.+++++....|.+++|++.++...+...+
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsG-KSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~---------- 107 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSG-KTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAK---------- 107 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSS-HHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHH----------
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCC-HHHHHHHHHHHHHhcCCeEEEEecccccchHHHH----------
Confidence 6789999999999999 999999999999998888 5789999999988899999999986654433221
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
++++..+++ ... ...+...+...+..
T Consensus 108 -------------rlgv~~~~l--------------------------------------~i~---~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 108 -------------NLGVDLKSL--------------------------------------LIS---QPDHGEQALEIVDE 133 (356)
T ss_dssp -------------HHTCCGGGC--------------------------------------EEE---CCSSHHHHHHHHHH
T ss_pred -------------HcCCchhhh--------------------------------------hhh---hccCHHHHHHHHHH
Confidence 011111100 000 01122333333333
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccc--cCC----C-----CHHHHHHHHHHHHHhhhhcCcEEEEeeCCC-----CC
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQC--EHS----N-----MDWEMLSFIKSLKGMVRSSNAVVVITFPPS-----LL 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~--~~~----~-----~~~~ll~FL~~LR~llR~s~~taliT~p~~-----l~ 341 (449)
+++ . ..+..|+|||+..... ... + ....+.++++.|+.+.+..+++++++.... +|
T Consensus 134 l~~----~----~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 134 LVR----S----GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHH----T----SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred Hhh----h----cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 322 1 3567999999986531 000 0 024577899999999999999999987652 23
Q ss_pred C-cc--h-hhhhhhhcceEEEEEee
Q 013117 342 S-LS--S-TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 342 ~-~~--~-~~~le~laDgVI~L~~f 362 (449)
. +. . ...|+|++|.+|.|+-.
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEec
Confidence 2 11 1 35689999999999864
No 17
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.24 E-value=3.3e-10 Score=106.65 Aligned_cols=233 Identities=13% Similarity=0.159 Sum_probs=132.6
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhh-hcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGL-VHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl-~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
..+++||+++||++|+||++.|.+++|.++.++| +++|++.++..|+ ..+..++|++.++...++.+.+...+...+
T Consensus 9 ~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsG-KSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 86 (251)
T 2ehv_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTG-KTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE- 86 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSS-HHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH-
T ss_pred cceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChH-
Confidence 4679999999999999999999999999999888 5789999999999 889999999887776665543222111100
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
.....+.+.+...+.... ..+.. . .... . ...+...+.+.+..
T Consensus 87 -----~~~~~~~~~~~~~~~~~~-------------------~~~~~-~---------~~~~--~-~~~~~~~~~~~~~~ 129 (251)
T 2ehv_A 87 -----KYEKEGKIAIVDGVSSVV-------------------GLPSE-E---------KFVL--E-DRFNVDNFLRYIYR 129 (251)
T ss_dssp -----HHHHTTSEEEEC---------------------------------------------------CCHHHHHHHHHH
T ss_pred -----HHhhcCCEEEEEcccccc-------------------ccccc-c---------ceec--c-CcccHHHHHHHHHH
Confidence 000111222211111000 00000 0 0000 0 01123334333333
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCC--cchhhhhhhhc-c
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLS--LSSTKRWQHMA-D 354 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~--~~~~~~le~la-D 354 (449)
.+. . .+..+|+||...+...... ++....+++..|...+++.++|++++.+..-.. ......++++| |
T Consensus 130 ~l~---~-----~~p~~lilDep~~~ld~~~-d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD 200 (251)
T 2ehv_A 130 VVK---A-----INAKRLVIDSIPSIALRLE-EERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIAR 200 (251)
T ss_dssp HHH---H-----TTCSEEEEECHHHHHHHSS-SGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCS
T ss_pred HHH---h-----hCCCEEEEccHHHHHhhcC-CHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeee
Confidence 333 1 3467999998876543111 233455555555555567799888887542111 11123457888 9
Q ss_pred eEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceEEe
Q 013117 355 TLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLE 417 (449)
Q Consensus 355 gVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE 417 (449)
.||.|+..... ......+.|.|+-... ++...+.|.+.. .++.|.
T Consensus 201 ~vi~l~~~~~~-----------~~~~r~l~i~K~r~~~------~~~~~~~~~i~~-~Gi~v~ 245 (251)
T 2ehv_A 201 GVIVLDLQEKN-----------IELKRYVLIRKMRETR------HSMKKYPFEIGP-NGIVVY 245 (251)
T ss_dssp EEEEEEEEECS-----------SSEEEEEEEEEETTCC------CCCBEEEEEEET-TEEEEC
T ss_pred EEEEEeeeccC-----------CeeEEEEEEEEccCCC------cCCceEEEEECC-CCeEEc
Confidence 99999864321 1235778888872111 234467888864 566665
No 18
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.23 E-value=1.6e-10 Score=119.38 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=126.6
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhh------cCCcEEEEcCCCC--hhhHhhcCCC
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLV------HGQPLLYASPSKD--PRGFLGTLPS 190 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~------~g~~vl~vs~~e~--p~~il~~LP~ 190 (449)
..+++||+++||++|||||+.|.+++|.+..++| +++|+++|+..++. .+..++|++.++. +..+..-+
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsG-KTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a-- 233 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTG-KSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA-- 233 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSS-HHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH--
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCC-hHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHH--
Confidence 4689999999999999999999999999999888 57899999988876 4678999987653 22221110
Q ss_pred CCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHH
Q 013117 191 PASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAA 270 (449)
Q Consensus 191 ~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~ 270 (449)
-++.|..+... .++.+.. ..+...
T Consensus 234 -------------------~~~gl~~~~vl----------------------------------eni~~~~---~~~~~~ 257 (400)
T 3lda_A 234 -------------------QRFGLDPDDAL----------------------------------NNVAYAR---AYNADH 257 (400)
T ss_dssp -------------------HHTTCCHHHHH----------------------------------HTEEEEE---CCSHHH
T ss_pred -------------------HHcCCChHhHh----------------------------------hcEEEec---cCChHH
Confidence 00011111000 0011100 011112
Q ss_pred HHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCCC------C-HHHHHHHHHHHHHhhhhcCcEEEEeeCCC----
Q 013117 271 LQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSN------M-DWEMLSFIKSLKGMVRSSNAVVVITFPPS---- 339 (449)
Q Consensus 271 l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~------~-~~~ll~FL~~LR~llR~s~~taliT~p~~---- 339 (449)
..+.+..+...+.. .++..|+||++.+....... . ...+.+++..|+.+.+..+++++++.+..
T Consensus 258 ~~~~l~~~~~~l~~-----~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~ 332 (400)
T 3lda_A 258 QLRLLDAAAQMMSE-----SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVD 332 (400)
T ss_dssp HHHHHHHHHHHHHH-----SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHh-----cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCC
Confidence 22222222222222 36889999999875321110 0 12457899999999999999999988762
Q ss_pred ---CCC--c---chhhhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcce
Q 013117 340 ---LLS--L---SSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKR 411 (449)
Q Consensus 340 ---l~~--~---~~~~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rr 411 (449)
++. + .....|+|++|.+|.|+...+ ....++|.|-|... . .+..|.+..
T Consensus 333 g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g--------------~~R~l~v~K~R~~p-------~-~e~~F~It~- 389 (400)
T 3lda_A 333 GGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKG--------------CQRLCKVVDSPCLP-------E-AECVFAIYE- 389 (400)
T ss_dssp ---------------CHHHHHCSEEEEEEECST--------------TEEEEEEEECSSSC-------S-CEEEEEEET-
T ss_pred ccccccCCCccCCchhHHHHhcceEEEEEecCC--------------CcEEEEEEcCCCCC-------C-CceEEEEeC-
Confidence 121 1 112568999999999987422 13678899985433 2 236788863
Q ss_pred ece
Q 013117 412 RFL 414 (449)
Q Consensus 412 r~~ 414 (449)
.++
T Consensus 390 ~Gi 392 (400)
T 3lda_A 390 DGV 392 (400)
T ss_dssp TEE
T ss_pred Ccc
Confidence 454
No 19
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.20 E-value=3.9e-11 Score=126.63 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=130.2
Q ss_pred CeEeec-CchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc-CCcEEEEcCCCChhhHhhcCCCCCCccc
Q 013117 119 TMFVSS-GIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH-GQPLLYASPSKDPRGFLGTLPSPASLKH 196 (449)
Q Consensus 119 ~~~iST-GIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~-g~~vl~vs~~e~p~~il~~LP~~~~~~~ 196 (449)
...++| |+++||++|| ||+.|++++|.+.+++| +++|+.+|+.+++.+ |++++|+++|+++++++..+-+...
T Consensus 221 ~~~i~t~G~~~LD~~lg-Gl~~G~l~li~G~pG~G-KT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~--- 295 (503)
T 1q57_A 221 SVGLLFSGCTGINDKTL-GARGGEVIMVTSGSGMV-MSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHN--- 295 (503)
T ss_dssp TTCSCCSSCTTHHHHHC-CCCTTCEEEEEESSCHH-HHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHT---
T ss_pred cCCccccchhhhhHhhc-ccCCCeEEEEeecCCCC-chHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHc---
Confidence 457899 9999999995 89999999999888776 457889999999987 9999999999999888775311000
Q ss_pred ccccccchhhccccEEEeeccc--cccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHH
Q 013117 197 DKSRDRESEQEKGLRIAWQYKK--YMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEH 274 (449)
Q Consensus 197 ~k~~~~~~~~~~~mKIAWRY~~--~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~ 274 (449)
.|.+.. +...+. ++ ...+-..+| .+ +...++.........+...+...
T Consensus 296 ----------------~~~~~~~~~~~~g~--l~-----~~~~~~~~~---~~----~~~~~l~i~~~~~~~~~~~i~~~ 345 (503)
T 1q57_A 296 ----------------RVRLRQSDSLKREI--IE-----NGKFDQWFD---EL----FGNDTFHLYDSFAEAETDRLLAK 345 (503)
T ss_dssp ----------------TSCCTTCHHHHHHH--HH-----TSHHHHHHH---HH----HTTTCEEEECCC---CHHHHHHH
T ss_pred ----------------CCChhhccccccCC--CC-----HHHHHHHHH---HH----hccCCEEEECCCCCCCHHHHHHH
Confidence 000000 000000 00 000000000 00 00011111100001234455544
Q ss_pred HHHHHHHhhhccCCCCceeEEEEcCCCcccccCC--CCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCC----------
Q 013117 275 CASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHS--NMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLS---------- 342 (449)
Q Consensus 275 i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~--~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~---------- 342 (449)
+..+++ . .++.+|+||+|........ +....+..++..|+.+.+..+++++++.+..-..
T Consensus 346 i~~~~~----~----~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~ 417 (503)
T 1q57_A 346 LAYMRS----G----LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRP 417 (503)
T ss_dssp HHHHHH----T----TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCC
T ss_pred HHHHHH----h----cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCC
Confidence 444333 1 3578999999986532211 2235788999999999999999999998755311
Q ss_pred c---ch--hhhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeee
Q 013117 343 L---SS--TKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKV 388 (449)
Q Consensus 343 ~---~~--~~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KL 388 (449)
+ .+ ...+++.||+||.|+.....+ +...-.|+|.|.
T Consensus 418 p~l~dlr~s~~ie~~aD~vi~l~r~~~~~----------~~~~~~l~v~K~ 458 (503)
T 1q57_A 418 VSITDLRGSGALRQLSDTIIALERNQQGD----------MPNLVLVRILKC 458 (503)
T ss_dssp CCSSSCSSSSHHHHHCSEEEEEEECSSSS----------CTTEEEEEEEEE
T ss_pred CChhhhccchHhhecCcEEEEEEeCCcCC----------CCCeEEEEEEec
Confidence 1 11 245789999999998753211 112457788887
No 20
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.14 E-value=2.2e-10 Score=135.48 Aligned_cols=170 Identities=15% Similarity=0.257 Sum_probs=118.1
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
...++||+++||.+|| ||||.|++++|.+++++| +++|+.+|++++..+|++|+|+++++..+++..+-
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsG-KTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~--------- 430 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG-KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK--------- 430 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHH---------
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHH---------
Confidence 5689999999999999 999999999999999888 57889999999999999999999988776653220
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
+.|...++. ... ..+.+.+.+.+..
T Consensus 431 --------------lGvd~~~L~--------------------------------------i~~---~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 431 --------------LGVDIDNLL--------------------------------------CSQ---PDTGEQALEICDA 455 (1706)
T ss_dssp --------------TTCCGGGCE--------------------------------------EEC---CSSHHHHHHHHHH
T ss_pred --------------cCCCHHHeE--------------------------------------EcC---CCCHHHHHHHHHH
Confidence 011111100 000 0122334433333
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCccccc-----CC-C-----CHHHHHHHHHHHHHhhhhcCcEEEEeeCCC-----CC
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCE-----HS-N-----MDWEMLSFIKSLKGMVRSSNAVVVITFPPS-----LL 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~-----~~-~-----~~~~ll~FL~~LR~llR~s~~taliT~p~~-----l~ 341 (449)
+++ . .++.+|||||+...... .. + ..+.+.++++.|+.+++..+++++++.... .|
T Consensus 456 lv~----~----~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~f 527 (1706)
T 3cmw_A 456 LAR----S----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (1706)
T ss_dssp HHH----H----TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHH----h----cCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccccc
Confidence 322 2 35789999999876420 00 0 124678999999999999999999987543 12
Q ss_pred Cc-c---hhhhhhhhcceEEEEEe
Q 013117 342 SL-S---STKRWQHMADTLLSVAA 361 (449)
Q Consensus 342 ~~-~---~~~~le~laDgVI~L~~ 361 (449)
.+ . -...|++++|.+|.|+-
T Consensus 528 g~~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 528 GNPETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEE
T ss_pred CCCccCCCCcceeeeCCEEEEEEe
Confidence 11 1 12568999999999875
No 21
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.13 E-value=1.7e-10 Score=115.61 Aligned_cols=170 Identities=11% Similarity=0.054 Sum_probs=107.3
Q ss_pred CeEeecCchhHHHHhc----CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc--CCcEEEEcCCCChhhHh-hcCCCC
Q 013117 119 TMFVSSGIADLDKILG----GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH--GQPLLYASPSKDPRGFL-GTLPSP 191 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG----GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~--g~~vl~vs~~e~p~~il-~~LP~~ 191 (449)
..++|||+++||.+|| ||||.| +++|.++.++| +++|+.+|++++..+ |.+|+|++.++...+.. +.|
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsG-KTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l--- 78 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSF-KSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM--- 78 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSS-HHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT---
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCC-HHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh---
Confidence 4689999999999999 999999 89999998887 578889999999987 89999999876644322 111
Q ss_pred CCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHH
Q 013117 192 ASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAAL 271 (449)
Q Consensus 192 ~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l 271 (449)
.|...++ -... ..+.+.+
T Consensus 79 ---------------------Gvd~d~l--------------------------------------lv~~---~~~~E~~ 96 (333)
T 3io5_A 79 ---------------------GVDPERV--------------------------------------IHTP---VQSLEQL 96 (333)
T ss_dssp ---------------------TCCGGGE--------------------------------------EEEE---CSBHHHH
T ss_pred ---------------------CCCHHHe--------------------------------------EEEc---CCCHHHH
Confidence 0111100 0000 1122333
Q ss_pred -HHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccC-----C--------CCHHHHHHHHHHHHHhhhhcCcEEEEeeC
Q 013117 272 -QEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEH-----S--------NMDWEMLSFIKSLKGMVRSSNAVVVITFP 337 (449)
Q Consensus 272 -~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~-----~--------~~~~~ll~FL~~LR~llR~s~~taliT~p 337 (449)
++. .+.+..++ ...+..|||||+....-.. . ...+.+-++|+.|..+++.+|+++++|-.
T Consensus 97 ~l~i-~~~l~~i~-----~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 97 RIDM-VNQLDAIE-----RGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHHH-HHHHHTCC-----TTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHH-HHHHHHhh-----ccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 221 12222122 2468999999998864210 0 01235778899999999999999999986
Q ss_pred CC----CCCc-c-h-hhhhhhhcceEEEEEee
Q 013117 338 PS----LLSL-S-S-TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 338 ~~----l~~~-~-~-~~~le~laDgVI~L~~f 362 (449)
.. +|.+ . . ...+ |.+-.-|.|+-.
T Consensus 171 V~k~G~~fg~p~~~GG~~l-~~ss~Rl~lrk~ 201 (333)
T 3io5_A 171 TYETQEMFSKTVMGGGTGP-MYSADTVFIIGK 201 (333)
T ss_dssp C---------------CCG-GGGSSEEEEEEE
T ss_pred eeecCcccCCCCCCCccee-eeeeEEEEEEec
Confidence 53 2321 1 1 2445 777777777654
No 22
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.12 E-value=2.7e-10 Score=119.06 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=124.3
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCccccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDK 198 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k 198 (449)
...++||+++||+++ |||+.|++++|.+.++.| +++|+.+|+...+.+|++++|+|+|++++++...+-+..
T Consensus 177 ~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~G-KTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~------ 248 (444)
T 3bgw_A 177 ITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMG-KTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTA------ 248 (444)
T ss_dssp CCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSS-HHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHH------
T ss_pred CCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCC-hHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHH------
Confidence 467899999999999 599999999999988887 578889999999999999999999999988887641100
Q ss_pred ccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHH
Q 013117 199 SRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF 278 (449)
Q Consensus 199 ~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~ 278 (449)
..|.+.++. .+....+.. .+..+....+ .+ ....+.... ....+...+...+..+
T Consensus 249 -------------~~i~~~~l~-~g~~~l~~~--~~~~l~~a~~---~l-----~~~~l~i~d-~~~~s~~~i~~~ir~l 303 (444)
T 3bgw_A 249 -------------GSINAQKIK-AARRDFASE--DWGKLSMAIG---EI-----SNSNINIFD-KAGQSVNYIWSKTRQT 303 (444)
T ss_dssp -------------SCCCHHHHH-HTGGGTCCS--CHHHHHHHHH---HH-----HTSCEEEEC-CSSCBHHHHHHHHHHH
T ss_pred -------------cCCCHHHHh-cccCCCCHH--HHHHHHHHHH---HH-----hcCCEEEEC-CCCCCHHHHHHHHHHH
Confidence 001111110 000000000 0000000000 00 001111100 0112345555444443
Q ss_pred HHHhhhccCCCCcee--EEEEcCCCcccccC--CCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC--C-----cc---
Q 013117 279 LAQHQRNDGSSALAG--RIAIQSLCAPQCEH--SNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLL--S-----LS--- 344 (449)
Q Consensus 279 L~~~~~~~~~~~~v~--RIvIdSL~Sp~~~~--~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~--~-----~~--- 344 (449)
.+ + .++. +|+||+|....... .+...++..+.+.|+.+.+..+++++++....-- . +.
T Consensus 304 ~~----~----~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsd 375 (444)
T 3bgw_A 304 KR----K----NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSD 375 (444)
T ss_dssp HH----H----SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGG
T ss_pred HH----H----hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhh
Confidence 33 2 3567 99999998654221 1223578999999999999999999998865421 0 11
Q ss_pred h--hhhhhhhcceEEEEEee
Q 013117 345 S--TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 345 ~--~~~le~laDgVI~L~~f 362 (449)
+ ...+++.||.||.|+..
T Consensus 376 lr~Sg~ieq~aD~Vi~L~r~ 395 (444)
T 3bgw_A 376 LRESGQLEQDADIIEFLYRD 395 (444)
T ss_dssp CCSCSHHHHHCSEEEECCBG
T ss_pred hhhhhhHHhhCCEEEEEecc
Confidence 1 13589999999999864
No 23
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.10 E-value=5.2e-10 Score=133.68 Aligned_cols=171 Identities=16% Similarity=0.267 Sum_probs=119.2
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
..++||||++||.+|| ||+|.|+.++|.++.++| +++|..+|+++|+.+|++++|+++++.++++...
T Consensus 1059 ~~~i~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtG-KT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~---------- 1127 (2050)
T 3cmu_A 1059 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG-KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR---------- 1127 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSS-HHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHH----------
T ss_pred cccccCCcHHHHHHhccCCcCCCcEEEEECCCCCC-HHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHH----------
Confidence 5689999999999997 899999999999988887 5788899999999999999999999888887743
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
++.|++..+. ..+.| ..+... .
T Consensus 1128 -------------~~G~dl~~l~-----------------~~~pd-------------------------~~e~~~---~ 1149 (2050)
T 3cmu_A 1128 -------------KLGVDIDNLL-----------------CSQPD-------------------------TGEQAL---E 1149 (2050)
T ss_dssp -------------HTTCCTTTCE-----------------EECCS-------------------------SHHHHH---H
T ss_pred -------------HcCCChhHhe-----------------eecCc-------------------------chHHHH---H
Confidence 1334444321 00000 011111 2
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCccccc--------CCC---CHHHHHHHHHHHHHhhhhcCcEEEEeeCC-----CCC
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCE--------HSN---MDWEMLSFIKSLKGMVRSSNAVVVITFPP-----SLL 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~--------~~~---~~~~ll~FL~~LR~llR~s~~taliT~p~-----~l~ 341 (449)
++..+.+. ..+.||+||+++..... ..+ ..+.+.++|+.|.+.++..++|+++|... .+|
T Consensus 1150 i~~~l~~~----~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~~~~wg~~F 1225 (2050)
T 3cmu_A 1150 ICDALARS----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 1225 (2050)
T ss_dssp HHHHHHHH----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHh----CCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcchhhhcc
Confidence 22222222 35789999999876211 000 01246688899999999999999988754 245
Q ss_pred Cc-ch---hhhhhhhcceEEEEEee
Q 013117 342 SL-SS---TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 342 ~~-~~---~~~le~laDgVI~L~~f 362 (449)
.+ .. ...+++++|++|.|+..
T Consensus 1226 gd~~~t~gg~~l~~~ad~ri~lrr~ 1250 (2050)
T 3cmu_A 1226 GNPETTTGGNALKFYASVRLDIRRI 1250 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred CCccccCCcchhheeeEEEEEEeee
Confidence 43 21 25689999999999753
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.10 E-value=4.2e-10 Score=133.09 Aligned_cols=171 Identities=15% Similarity=0.214 Sum_probs=117.7
Q ss_pred CeEeecCchhHHHHhc-CCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILG-GGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG-GGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
..++||||++||++|+ ||||.|++++|.++.++| ++.|+.+|+++++.+|++++|+++++...++..+-
T Consensus 12 ~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsG-KT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~--------- 81 (1706)
T 3cmw_A 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG-KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK--------- 81 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHH---------
T ss_pred CcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCC-HHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHh---------
Confidence 4689999999999999 999999999999998888 57888999999999999999999987765554320
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
+.|...++. .| .. ...+.+. +
T Consensus 82 --------------lg~dl~~i~-------------------i~-------------------~p---~t~e~l~----~ 102 (1706)
T 3cmw_A 82 --------------LGVDIDNLL-------------------CS-------------------QP---DTGEQAL----E 102 (1706)
T ss_dssp --------------TTCCGGGCE-------------------EE-------------------CC---SSHHHHH----H
T ss_pred --------------hccCcccee-------------------ee-------------------cc---CcHHHHH----H
Confidence 112211110 00 00 0112222 2
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccCC--------CC---HHHHHHHHHHHHHhhhhcCcEEEEeeCCC-----CC
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEHS--------NM---DWEMLSFIKSLKGMVRSSNAVVVITFPPS-----LL 341 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~--------~~---~~~ll~FL~~LR~llR~s~~taliT~p~~-----l~ 341 (449)
+++.+.+. ..+.+|+|||++.+..... +. .+.+.+++..|..+++..++++++|.... .+
T Consensus 103 ll~~L~~~----~~~~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~f 178 (1706)
T 3cmw_A 103 ICDALARS----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178 (1706)
T ss_dssp HHHHHHHH----TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHhc----cCCCEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccccc
Confidence 33333221 2468999999998643210 00 12478899999999999999988887541 22
Q ss_pred Cc----chhhhhhhhcceEEEEEee
Q 013117 342 SL----SSTKRWQHMADTLLSVAAI 362 (449)
Q Consensus 342 ~~----~~~~~le~laDgVI~L~~f 362 (449)
.+ .....|+|++|++|.|+-.
T Consensus 179 gd~~~a~~g~~l~h~ad~~I~L~r~ 203 (1706)
T 3cmw_A 179 GNPETTTGGNALKFYASVRLDIRRI 203 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred CccccccCcchhhhhCCEEEEEEec
Confidence 22 1236789999999999764
No 25
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.10 E-value=3.6e-09 Score=112.34 Aligned_cols=220 Identities=17% Similarity=0.182 Sum_probs=135.6
Q ss_pred CCeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 118 GTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 118 g~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
...+++||+++||.+|+||++.|++++|.++.++| +++|+++|+.....+|++++|+++++.+.++...+-..
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsG-KSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~------ 331 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTG-KTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSW------ 331 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSS-HHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTT------
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCC-HHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc------
Confidence 35689999999999999999999999999999998 57899999999888899999999988887776653111
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
.|....+...+. .+..|. .+. . -+..+... .
T Consensus 332 ---------------g~~~~~~~~~g~-------------~~~~~~----~p~-----~---------LS~g~~q~---~ 362 (525)
T 1tf7_A 332 ---------------GMDFEEMERQNL-------------LKIVCA----YPE-----S---------AGLEDHLQ---I 362 (525)
T ss_dssp ---------------SCCHHHHHHTTS-------------EEECCC----CGG-----G---------SCHHHHHH---H
T ss_pred ---------------CCCHHHHHhCCC-------------EEEEEe----ccc-----c---------CCHHHHHH---H
Confidence 111111110000 000000 000 0 01122222 1
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCCcch--h-hhhhhhcc
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSLSS--T-KRWQHMAD 354 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~~~~--~-~~le~laD 354 (449)
++..+.. .++.+|+||++.......+ ......+++.|-..+++.+++++++.+.......+ . ..++++||
T Consensus 363 ~~a~~l~-----~~p~llilDp~~~Ld~~~~--~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D 435 (525)
T 1tf7_A 363 IKSEIND-----FKPARIAIDSLSALARGVS--NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITD 435 (525)
T ss_dssp HHHHHHT-----TCCSEEEEECHHHHTSSSC--HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCS
T ss_pred HHHHHHh-----hCCCEEEEcChHHHHhhCC--hHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeee
Confidence 2222211 3568999997765532211 23366777777667777888888887654211111 1 34689999
Q ss_pred eEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeecccccCCcccccCceeeEEEcceeceEEee
Q 013117 355 TLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNTQVPLILEATTFSIKLQKRRFLVLEC 418 (449)
Q Consensus 355 gVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lntl~~~~~~~~~lAFKl~rrr~~vIE~ 418 (449)
.||.|+.+... ......+.|.|. +.+. ++..-..|.+. .+++.|..
T Consensus 436 ~vi~L~~ge~~-----------~~~~R~l~v~K~-R~~~-----~~~~~~~f~i~-~~Gi~v~~ 481 (525)
T 1tf7_A 436 TIILLQYVEIR-----------GEMSRAINVFKM-RGSW-----HDKAIREFMIS-DKGPDIKD 481 (525)
T ss_dssp EEEEEEEEEET-----------TEEEEEEEEEEE-SSSC-----CCCBCEEEEEC-SSCEEEEE
T ss_pred EEEEEEEEEeC-----------CEEEEEEEEEEC-CCCC-----CCCCEEEEEEc-CCCEEEec
Confidence 99999987532 123578889997 3332 22334678886 45776644
No 26
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.03 E-value=8e-10 Score=115.01 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=119.4
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhh-cCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLV-HGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~-~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
...++||+++||.++ |||+.|.+++|.+.+++| +++|+.+++...+. +|++++|++++.+++++...+-....
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~G-KT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~---- 253 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMG-KTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEA---- 253 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSC-HHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHT----
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHc----
Confidence 467899999999999 899999999999988887 56888999999887 58999999999888887765311000
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCAS 277 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~ 277 (449)
.|...++.. +. .+ ...|-. +...+. .+....+.... ....+...+...+..
T Consensus 254 ---------------~i~~~~l~~-g~--l~-----~~~~~~---~~~a~~--~l~~~~l~i~d-~~~~s~~~l~~~~~~ 304 (444)
T 2q6t_A 254 ---------------RIDMNRVRL-GQ--LT-----DRDFSR---LVDVAS--RLSEAPIYIDD-TPDLTLMEVRARARR 304 (444)
T ss_dssp ---------------TCCTTTCCG-GG--CC-----HHHHHH---HHHHHH--HHHTSCEEEEC-CTTCBHHHHHHHHHH
T ss_pred ---------------CCCHHHHhC-CC--CC-----HHHHHH---HHHHHH--HHhcCCEEEEC-CCCCCHHHHHHHHHH
Confidence 001110000 00 00 000000 000000 00000111100 011234555544444
Q ss_pred HHHHhhhccCCCCceeEEEEcCCCccccc--C---CCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC--C-----cch
Q 013117 278 FLAQHQRNDGSSALAGRIAIQSLCAPQCE--H---SNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLL--S-----LSS 345 (449)
Q Consensus 278 ~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~--~---~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~--~-----~~~ 345 (449)
+.+ + .++..|+||+|...... . .+...++..++..|+.+.+..+++++++....-- . +..
T Consensus 305 l~~----~----~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l 376 (444)
T 2q6t_A 305 LVS----Q----NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPML 376 (444)
T ss_dssp HHH----H----SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCG
T ss_pred HHH----H----cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCCh
Confidence 333 2 35789999999876432 1 1223578999999999999999988888754321 1 111
Q ss_pred -----hhhhhhhcceEEEEEee
Q 013117 346 -----TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 346 -----~~~le~laDgVI~L~~f 362 (449)
...+++.||.||.|+.-
T Consensus 377 ~dlr~Sg~ie~~aD~vi~L~r~ 398 (444)
T 2q6t_A 377 SDLRESGSIEQDADLVMFIYRD 398 (444)
T ss_dssp GGGGGGCTTGGGCSEEEEEEEG
T ss_pred HHhcchhHHHHhCCEEEEEecc
Confidence 12579999999999864
No 27
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.94 E-value=6.5e-09 Score=105.15 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=109.2
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc------CCcEEEEcCCCC--hhhHhhcCCC
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH------GQPLLYASPSKD--PRGFLGTLPS 190 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~------g~~vl~vs~~e~--p~~il~~LP~ 190 (449)
..++|||+++||.+||||+|.|+++.|.++.++| +++|++++++..... +..|+|++.++. ++++..-...
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsG-KTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~ 188 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSG-KTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 188 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSS-HHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCC-HHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999888 578899999875322 357788887553 2222111000
Q ss_pred CCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHH
Q 013117 191 PASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAA 270 (449)
Q Consensus 191 ~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~ 270 (449)
.. |...... .++.+...........
T Consensus 189 ~~---------------------~~~~~v~----------------------------------~ni~~~~~~~~~~~~~ 213 (349)
T 1pzn_A 189 RG---------------------LDPDEVL----------------------------------KHIYVARAFNSNHQML 213 (349)
T ss_dssp TT---------------------CCHHHHG----------------------------------GGEEEEECCSHHHHHH
T ss_pred cC---------------------CCHHHHh----------------------------------hCEEEEecCChHHHHH
Confidence 00 0000000 0011100000001112
Q ss_pred HHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCCC---C----HHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC--
Q 013117 271 LQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSN---M----DWEMLSFIKSLKGMVRSSNAVVVITFPPSLL-- 341 (449)
Q Consensus 271 l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~---~----~~~ll~FL~~LR~llR~s~~taliT~p~~l~-- 341 (449)
+++.+..++.++ ++...++.+|+||++.+....... . ...+.++++.|+.+.+..+++++++.+..--
T Consensus 214 ~l~~~~~~~~~l---S~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 214 LVQQAEDKIKEL---LNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHHHHHHHHS---SSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHHh---ccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 222333333322 222357899999999987421110 0 1247899999999999899999988653211
Q ss_pred ---Cc----chhhhhhhhcceEEEEEe
Q 013117 342 ---SL----SSTKRWQHMADTLLSVAA 361 (449)
Q Consensus 342 ---~~----~~~~~le~laDgVI~L~~ 361 (449)
.+ .....|+|.+|.+|.|+.
T Consensus 291 ~~~~~~~~~~~G~~l~~~~~~rL~l~~ 317 (349)
T 1pzn_A 291 AFFGDPTRPIGGHILAHSATLRVYLRK 317 (349)
T ss_dssp -----------CCCCCTTCSEEEEEEE
T ss_pred cccCCccccCCcceEeecCcEEEEEEE
Confidence 11 112457889999998876
No 28
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.94 E-value=3e-09 Score=111.01 Aligned_cols=198 Identities=14% Similarity=0.140 Sum_probs=120.0
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhh-cCCcEEEEcCCCChhhHhhcCCCCCCcccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLV-HGQPLLYASPSKDPRGFLGTLPSPASLKHD 197 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~-~g~~vl~vs~~e~p~~il~~LP~~~~~~~~ 197 (449)
...++||+++||+++ |||+.|.+++|.+.+++| +++|+.+++...+. +|++|+|++.+..++++...+-+.
T Consensus 183 ~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~G-KTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~------ 254 (454)
T 2r6a_A 183 ITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVG-KTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCA------ 254 (454)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSC-HHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHH------
T ss_pred CCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCC-HHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH------
Confidence 467999999999999 789999999999888887 57888999999887 588999999998888877653110
Q ss_pred cccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccc---cccccccccceeeeeeccCCcchHHHHHH
Q 013117 198 KSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRK---PLERHYFTRQRVNCVGIQHSKNLAALQEH 274 (449)
Q Consensus 198 k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk---~l~~~~~~~~~i~~~~~~~~~~~~~l~~~ 274 (449)
...|..+++. .+. . ..-|+.+ .+. .+...++.... ....+...+...
T Consensus 255 -------------~~~~~~~~l~-~g~--l-----------~~~~~~~~~~a~~--~l~~~~l~i~d-~~~~s~~~i~~~ 304 (454)
T 2r6a_A 255 -------------EGNINAQNLR-TGK--L-----------TPEDWGKLTMAMG--SLSNAGIYIDD-TPSIRVSDIRAK 304 (454)
T ss_dssp -------------HHTCCHHHHH-TSC--C-----------CHHHHHHHHHHHH--HHHSSCEEEEC-CTTCCHHHHHHH
T ss_pred -------------HcCCCHHHHh-cCC--C-----------CHHHHHHHHHHHH--HHhcCCEEEEC-CCCCCHHHHHHH
Confidence 0001111110 000 0 0000000 000 00000111000 001133444433
Q ss_pred HHHHHHHhhhccCCCCceeEEEEcCCCcccccC---CCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC--C-----cc
Q 013117 275 CASFLAQHQRNDGSSALAGRIAIQSLCAPQCEH---SNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLL--S-----LS 344 (449)
Q Consensus 275 i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~---~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~--~-----~~ 344 (449)
+.. +... .++..|+||++....... .+...++..++..|+.+.+..+++++++....-- . +.
T Consensus 305 ~~~----l~~~----~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~ 376 (454)
T 2r6a_A 305 CRR----LKQE----SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPM 376 (454)
T ss_dssp HHH----HHTT----TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCC
T ss_pred HHH----HHHH----cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCc
Confidence 322 2221 357899999998754221 1234678999999999999999988888764321 1 11
Q ss_pred h-----hhhhhhhcceEEEEEee
Q 013117 345 S-----TKRWQHMADTLLSVAAI 362 (449)
Q Consensus 345 ~-----~~~le~laDgVI~L~~f 362 (449)
. ...+++.||.||.|+.-
T Consensus 377 lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 377 MSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp THHHHTTCSHHHHCSEEEEEEET
T ss_pred HHHhhccchhHhhCCEEEEEecc
Confidence 1 12579999999999863
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.84 E-value=3e-09 Score=103.39 Aligned_cols=188 Identities=11% Similarity=0.088 Sum_probs=106.6
Q ss_pred CCCeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcC-----------CcEEEEcCCCChhhHh
Q 013117 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHG-----------QPLLYASPSKDPRGFL 185 (449)
Q Consensus 117 ~g~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g-----------~~vl~vs~~e~p~~il 185 (449)
+...+++||+++||.+|| |||.|++++|.+..++| +++|+++|++ ++..| .+++|++.++...++.
T Consensus 8 ~~~~~i~tg~~~ld~~lg-gl~~G~i~~i~G~~GsG-KTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~ 84 (279)
T 1nlf_A 8 NILEAFAAAPPPLDYVLP-NMVAGTVGALVSPGGAG-KSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAEDPPTAIH 84 (279)
T ss_dssp CHHHHHHSCCCCCCEEET-TEETTSEEEEEESTTSS-HHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSSCHHHHH
T ss_pred CHHHHhcCCCCChheeEC-CccCCCEEEEEcCCCCC-HHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEECCCCHHHHH
Confidence 446789999999999995 89999999999999888 5788898888 56664 6788899877766554
Q ss_pred hcCCCCCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCC
Q 013117 186 GTLPSPASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHS 265 (449)
Q Consensus 186 ~~LP~~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~ 265 (449)
..+-... |.++..... .....+.+..... ..+.. .
T Consensus 85 ~r~~~~g---------------------~~~~~~~~~-------------~~~~~l~l~~~~~------~~~~~-----l 119 (279)
T 1nlf_A 85 HRLHALG---------------------AHLSAEERQ-------------AVADGLLIQPLIG------SLPNI-----M 119 (279)
T ss_dssp HHHHHHH---------------------TTSCHHHHH-------------HHHHHEEECCCTT------SCCCT-----T
T ss_pred HHHHHHH---------------------hhcChhhhh-------------hccCceEEeecCC------CCccc-----C
Confidence 3321110 110000000 0000000000000 00000 0
Q ss_pred cchHHHHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCC---
Q 013117 266 KNLAALQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLLS--- 342 (449)
Q Consensus 266 ~~~~~l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~~--- 342 (449)
+... .+.+..++ .++.+|+||++.+..-.+.+....+..++..|+.+.+..+++++++.+..-..
T Consensus 120 -s~g~-~~~i~~l~----------~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~~ 187 (279)
T 1nlf_A 120 -APEW-FDGLKRAA----------EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMM 187 (279)
T ss_dssp -SHHH-HHHHHHHH----------TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-------
T ss_pred -CHHH-HHHHHHhc----------CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccc
Confidence 0111 11222221 13679999999884322333345778899999999988899888887643221
Q ss_pred --cch---hhhhhhhcceEEEEEeeCC
Q 013117 343 --LSS---TKRWQHMADTLLSVAAIPD 364 (449)
Q Consensus 343 --~~~---~~~le~laDgVI~L~~f~~ 364 (449)
... ......++|+|+.+..+..
T Consensus 188 g~~~~~~~~~g~~~l~d~v~~~~~~~~ 214 (279)
T 1nlf_A 188 GAGDQQQASRGSSVLVDNIRWQSYLSS 214 (279)
T ss_dssp -------------CTGGGCSCEEEEEE
T ss_pred CCchhhhhccchhhhccchhhhhhccC
Confidence 111 1334667899888776543
No 30
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.80 E-value=9.9e-09 Score=103.67 Aligned_cols=200 Identities=14% Similarity=0.141 Sum_probs=120.8
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCChhhHhhcCCCCCCccccc
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKDPRGFLGTLPSPASLKHDK 198 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~p~~il~~LP~~~~~~~~k 198 (449)
...++||+++||+++| ||..|.+++|.+.++.| +++|+.+++...+.+|++++|+|+|.+++++...+-+....
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~G-KTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~---- 99 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMG-KTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTS---- 99 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSC-HHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHC----
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCC-HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhC----
Confidence 4678999999999995 89999999999988887 57888999999999999999999999999888764110000
Q ss_pred ccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHHHHHHHHHH
Q 013117 199 SRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAALQEHCASF 278 (449)
Q Consensus 199 ~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~l~~~i~~~ 278 (449)
+.+.++.. +. .+. ...+.+....+ .+ ...++.... ....+...+...+..+
T Consensus 100 ---------------v~~~~l~~-g~--Ls~--~e~~~l~~a~~---~l-----~~~~l~I~d-~~~~si~~i~~~ir~l 150 (338)
T 4a1f_A 100 ---------------INMHDLES-GR--LDD--DQWENLAKCFD---HL-----SQKKLFFYD-KSYVRIEQIRLQLRKL 150 (338)
T ss_dssp ---------------CCHHHHHH-TC--CCH--HHHHHHHHHHH---HH-----HHSCEEEEC-CTTCCHHHHHHHHHHH
T ss_pred ---------------CCHHHHhc-CC--CCH--HHHHHHHHHHH---HH-----hcCCeEEeC-CCCCcHHHHHHHHHHH
Confidence 01111100 00 000 00000000000 00 001111100 1111344454433333
Q ss_pred HHHhhhccCCCC-ceeEEEEcCCCcccccC--CCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC--C-----c---ch
Q 013117 279 LAQHQRNDGSSA-LAGRIAIQSLCAPQCEH--SNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLL--S-----L---SS 345 (449)
Q Consensus 279 L~~~~~~~~~~~-~v~RIvIdSL~Sp~~~~--~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~--~-----~---~~ 345 (449)
.+ . . ++..|+||+|....... .+...++..+...||.+.+..++.++++....-- . + .+
T Consensus 151 ~~----~----~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDL 222 (338)
T 4a1f_A 151 KS----Q----HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDI 222 (338)
T ss_dssp HH----H----CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGS
T ss_pred HH----h----cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhc
Confidence 22 2 2 68999999997542211 1112468899999999999999988888765421 0 1 11
Q ss_pred --hhhhhhhcceEEEEEe
Q 013117 346 --TKRWQHMADTLLSVAA 361 (449)
Q Consensus 346 --~~~le~laDgVI~L~~ 361 (449)
...++.-||.|+.|+-
T Consensus 223 reSg~IeqdAD~Vl~l~R 240 (338)
T 4a1f_A 223 KDSGGIEQDADIVLFLYR 240 (338)
T ss_dssp EETTEECCCCSEEEEEEC
T ss_pred ccchhhhhhCcEEEEEec
Confidence 2457889999999974
No 31
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.73 E-value=5.5e-08 Score=90.18 Aligned_cols=195 Identities=11% Similarity=0.108 Sum_probs=107.7
Q ss_pred CeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhh------cCCcEEEEcCCCC--hhhHhhcCCC
Q 013117 119 TMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLV------HGQPLLYASPSKD--PRGFLGTLPS 190 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~------~g~~vl~vs~~e~--p~~il~~LP~ 190 (449)
...++||+++||.+|+||++.|.++.|.+..++| +++|++.++..... .+..++|+..++. ++.+..-
T Consensus 4 ~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsG-KSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~--- 79 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSG-KTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI--- 79 (231)
T ss_dssp CCEECCSCHHHHHHTTSSEESSEEEEEEESTTSS-HHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH---
T ss_pred CCccCCCChhHHhHhcCCCCCCcEEEEECCCCCC-HHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHH---
Confidence 4689999999999999999999999999999888 57888998886654 2455777765432 1111110
Q ss_pred CCCcccccccccchhhccccEEEeeccccccCCCCCCCCCCCCCCCccccccccccccccccccceeeeeeccCCcchHH
Q 013117 191 PASLKHDKSRDRESEQEKGLRIAWQYKKYMGENQPNFDSHRDNKQDYCNEFDFRKPLERHYFTRQRVNCVGIQHSKNLAA 270 (449)
Q Consensus 191 ~~~~~~~k~~~~~~~~~~~mKIAWRY~~~~~~~~~~~~~~~~~~~~f~h~FDLsk~l~~~~~~~~~i~~~~~~~~~~~~~ 270 (449)
.+.+. . ..+ ... .++.+...........
T Consensus 80 -------------------------~~~~~------~------------~~~---~~~------~~~~~~~~~~~~~~~~ 107 (231)
T 4a74_A 80 -------------------------AQNRG------L------------DPD---EVL------KHIYVARAFNSNHQML 107 (231)
T ss_dssp -------------------------HHHTT------S------------CHH---HHH------HTEEEEECCSHHHHHH
T ss_pred -------------------------HHHcC------C------------CHH---HHh------hcEEEEecCChHHHHH
Confidence 00000 0 000 000 0011100000000011
Q ss_pred HHHHHHHHHHHhhhccCCCCceeEEEEcCCCcccccCCCC-------HHHHHHHHHHHHHhhhhcCcEEEEeeCCCCCCc
Q 013117 271 LQEHCASFLAQHQRNDGSSALAGRIAIQSLCAPQCEHSNM-------DWEMLSFIKSLKGMVRSSNAVVVITFPPSLLSL 343 (449)
Q Consensus 271 l~~~i~~~L~~~~~~~~~~~~v~RIvIdSL~Sp~~~~~~~-------~~~ll~FL~~LR~llR~s~~taliT~p~~l~~~ 343 (449)
..+.+.+++.+.... ..++..|+||++.+........ ...+..++..|+.+.++.+++++++.+..-.
T Consensus 108 ~~~~~~~~~~~~~~~---~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~-- 182 (231)
T 4a74_A 108 LVQQAEDKIKELLNT---DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN-- 182 (231)
T ss_dssp HHHHHHHHHHHHTTS---SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHhccc---CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC--
Confidence 122233333322110 2467899999988653211000 1125688899999998889988888753221
Q ss_pred chhhhhhhhcceEEEEEeeCCCcHHHhhhccCCCCcceeEEEeeec
Q 013117 344 SSTKRWQHMADTLLSVAAIPDEDKELAKLLSGYQDMVGLLNVHKVA 389 (449)
Q Consensus 344 ~~~~~le~laDgVI~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp 389 (449)
-...+++++|.+|.|+. +. .....++|.|-+
T Consensus 183 -~g~~~~~~~d~~l~l~~--~~------------~~~r~l~~~K~r 213 (231)
T 4a74_A 183 -GGHILAHSATLRVYLRK--GK------------GGKRIARLIDAP 213 (231)
T ss_dssp --------CCSEEEEEEE--CT------------TSCEEEEEESCC
T ss_pred -cchhhHhhceEEEEEEe--cC------------CCeEEEEEEeCC
Confidence 12347899999999987 11 123678888873
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.70 E-value=2.8e-07 Score=97.76 Aligned_cols=68 Identities=19% Similarity=0.436 Sum_probs=58.9
Q ss_pred CCCeEeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc-CCcEEEEcCCCChhhHh
Q 013117 117 NGTMFVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH-GQPLLYASPSKDPRGFL 185 (449)
Q Consensus 117 ~g~~~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~-g~~vl~vs~~e~p~~il 185 (449)
.+..+++||++.||.+..||+|.|.+++|.+..++| +++|+++|+..|+.. ++..+|++.++.+.++.
T Consensus 16 ~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsG-KSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~ 84 (525)
T 1tf7_A 16 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTG-KTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII 84 (525)
T ss_dssp SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSS-HHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH
T ss_pred cccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCC-HHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHH
Confidence 446789999999999999999999999999999998 589999999899988 88899998876554443
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.39 E-value=2.9e-07 Score=92.40 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=45.2
Q ss_pred EeecCchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcC
Q 013117 121 FVSSGIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASP 177 (449)
Q Consensus 121 ~iSTGIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~ 177 (449)
.++||+++||++| ||+|.|++++|.+++++| +++|+.+++.+ +|.+++|++.
T Consensus 105 ~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsG-KTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 105 ELVGCSPVVAEFG-GHRYASGMVIVTGKGNSG-KTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp TCCSBCCEEEEET-TEEEESEEEEEECSCSSS-HHHHHHHHHHH---HHTTSCCEEE
T ss_pred ccccCcHHHHHHh-CCCCCCcEEEEEcCCCCC-HHHHHHHHHHh---CCCCEEEEEe
Confidence 4789999999999 999999999999988887 46788999887 7778888875
No 34
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.33 E-value=8.8e-06 Score=79.22 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=56.2
Q ss_pred CeEeec-CchhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhc-CCcEEEEcCCCChhhHhhc
Q 013117 119 TMFVSS-GIADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVH-GQPLLYASPSKDPRGFLGT 187 (449)
Q Consensus 119 ~~~iST-GIp~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~-g~~vl~vs~~e~p~~il~~ 187 (449)
...++| |++.||.++ |||+.|.+++|.+..++| +++|+++++...... |++++|++.+..+.++.+.
T Consensus 14 ~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~G-KTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r 82 (296)
T 1cr0_A 14 SVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMG-KSTFVRQQALQWGTAMGKKVGLAMLEESVEETAED 82 (296)
T ss_dssp CCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSS-HHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHH
T ss_pred cCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHH
Confidence 456889 999999999 789999999999998888 578889999887766 8899999987766665543
No 35
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.51 E-value=10 Score=35.33 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=33.4
Q ss_pred CCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCCCC
Q 013117 139 LGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPSKD 180 (449)
Q Consensus 139 lGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~e~ 180 (449)
.|.+++|.++.++| +++++.+++..-..+|++++++.+..+
T Consensus 11 ~G~i~litG~mGsG-KTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 11 IGWIEFITGPMFAG-KTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp CCEEEEEECSTTSC-HHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CcEEEEEECCCCCc-HHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 48899999987787 567788888888888999999976444
No 36
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=73.61 E-value=18 Score=35.10 Aligned_cols=105 Identities=14% Similarity=0.034 Sum_probs=65.4
Q ss_pred eEEEEcCCCcccccCC-CCHHHH-HHHHHHHHHhhhhcCcEEEEeeCCCC--C-C-c---------chhhhhhhhcceEE
Q 013117 293 GRIAIQSLCAPQCEHS-NMDWEM-LSFIKSLKGMVRSSNAVVVITFPPSL--L-S-L---------SSTKRWQHMADTLL 357 (449)
Q Consensus 293 ~RIvIdSL~Sp~~~~~-~~~~~l-l~FL~~LR~llR~s~~taliT~p~~l--~-~-~---------~~~~~le~laDgVI 357 (449)
.-|+||..--...... -...++ .+||..||.. .++ +++|+..+. + . + .+...+.|.||.||
T Consensus 151 ~vlIldqpdlLLa~t~~it~~~L~~~~I~~L~k~---~~~-lvvt~saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~vi 226 (280)
T 4a8j_C 151 TIVIIEQPELLLSLVSGLTCSELNNKFITPLLRQ---CKV-LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINL 226 (280)
T ss_dssp EEEEEECGGGHHHHSTTCCHHHHHHHTHHHHHHT---CSE-EEEEEECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEE
T ss_pred eEEEEcChHHHHHhccCCCHHHHHHHHHHHHHHh---cce-EEEEeccCccccccCCCCchHHHHHHHHHHHHHHhheEE
Confidence 5778887643322111 135688 9999999953 333 344444432 1 1 1 12456788999999
Q ss_pred EEEeeCCCcHHHhhhccCCCCcceeEEEeeeccccc--CCcccccCceeeEEEcc
Q 013117 358 SVAAIPDEDKELAKLLSGYQDMVGLLNVHKVARLNT--QVPLILEATTFSIKLQK 410 (449)
Q Consensus 358 ~L~~f~~~~~e~~~~~~~yk~~hGLL~V~KLp~lnt--l~~~~~~~~~lAFKl~r 410 (449)
.|++.+-. .-+|..|.|+|.|=+.... ......+.++|-|-+.+
T Consensus 227 sLrpL~TG---------~AkDVTGvLrItrGg~~~~~~~~~~~v~E~EyLY~v~~ 272 (280)
T 4a8j_C 227 NLNPLKTG---------FAKDVTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEK 272 (280)
T ss_dssp EEECCCC-----------CCSCCEEEEEEECSSCCCCSCTTCCBCCEEEEEEEET
T ss_pred eecccCCc---------ccccceEEEEEecCCcccccccccccccceeEEEEEcC
Confidence 99998642 2578999999999765532 11223456788888753
No 37
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=54.77 E-value=14 Score=32.89 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=22.4
Q ss_pred CCeEeecCchhHHHHh-cCCccCCcEEEEeecCCCChHHH-HHHHHHHhhhh---cCCcEEEEcC
Q 013117 118 GTMFVSSGIADLDKIL-GGGFPLGSLVMVMEDAEAPHHML-LLRNFMSQGLV---HGQPLLYASP 177 (449)
Q Consensus 118 g~~~iSTGIp~LD~lL-GGGLPlGS~lLIeEd~~t~~~~~-LlkyFlAEGl~---~g~~vl~vs~ 177 (449)
.++....|++.+|.-+ |||+|.|.+.=|..+.. +.+.. |+.-.+++ +. ++..+++++.
T Consensus 21 ~~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~-g~gel~LL~P~La~-l~~~~~~r~vlwI~P 83 (161)
T 1oft_A 21 ASNGAPLLDDVIDSPSSASIEEPAAFSELSLSGL-PGHCLTLLAPILRE-LSEEQDARWLTLIAP 83 (161)
T ss_dssp ----------------------CCSEEEEEEESC-HHHHHHHHHHHHHH-HHTCSSSSEEEEESC
T ss_pred hCccCCCCcccccccCCCCCCCCcceEEEccCCC-cHHHHHHHHHHHHH-hcccccCccEEEECC
Confidence 3677799999999988 78999999977664433 22333 44555555 33 5678888876
No 38
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=44.10 E-value=4.8 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=0.0
Q ss_pred CeEeecCchhHHHHhc
Q 013117 119 TMFVSSGIADLDKILG 134 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLG 134 (449)
..+++||+.+||.|||
T Consensus 99 ~~~itTGs~~lD~lLg 114 (114)
T 1b22_A 99 IIQITTGSKELDKLLQ 114 (114)
T ss_dssp ----------------
T ss_pred CCeeccCcHHHHhhhC
Confidence 5789999999999997
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=39.21 E-value=41 Score=29.61 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=35.4
Q ss_pred chhHHHHhcCCccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcC
Q 013117 126 IADLDKILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASP 177 (449)
Q Consensus 126 Ip~LD~lLGGGLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~ 177 (449)
+..|..++.++ .+..++|.|+.++| +++|++.++.+-...+.++++++.
T Consensus 40 ~~~l~~~~~~~--~~~~~ll~G~~G~G-KT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 40 IGALKSAASGD--GVQAIYLWGPVKSG-RTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp HHHHHHHHHTC--SCSEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred HHHHHHHHhCC--CCCeEEEECCCCCC-HHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34566666554 57788999888777 456778887776667888888875
No 40
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=37.72 E-value=65 Score=30.95 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=52.1
Q ss_pred eEEEEcCCCcccccCCCCHHHHHHHHHHHHHhhhhcCcEEEEeeCCCCC-------------CcchhhhhhhhcceEEEE
Q 013117 293 GRIAIQSLCAPQCEHSNMDWEMLSFIKSLKGMVRSSNAVVVITFPPSLL-------------SLSSTKRWQHMADTLLSV 359 (449)
Q Consensus 293 ~RIvIdSL~Sp~~~~~~~~~~ll~FL~~LR~llR~s~~taliT~p~~l~-------------~~~~~~~le~laDgVI~L 359 (449)
.-|+||||.... ..++-.||-++- ..+++.+.+.+.++- -|+-+.-+.++|-+||.+
T Consensus 102 ~LVIIDSLN~l~------~~~L~~FlsSi~----sP~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v 171 (270)
T 4a8j_B 102 HMVIIDSLNYIS------TEYITRFLSEIA----SPHCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDI 171 (270)
T ss_dssp EEEEESCGGGSC------GGGHHHHHHHHC----CTTEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEE
T ss_pred eEEEEecCcchh------hhhHHHHHHHhh----cCCcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEE
Confidence 467999997542 246888886655 457777777755532 222345678999999999
Q ss_pred EeeCCC---cHHHhhhccCCCCccee
Q 013117 360 AAIPDE---DKELAKLLSGYQDMVGL 382 (449)
Q Consensus 360 ~~f~~~---~~e~~~~~~~yk~~hGL 382 (449)
+++... +.|+...+.+|.-..||
T Consensus 172 ~~~~~~~~deE~l~~~l~k~~~P~gl 197 (270)
T 4a8j_B 172 DVVLTGTLDTEEVSELLNEFRIPRGL 197 (270)
T ss_dssp EECCCSSCCHHHHHHHHHTTCCCSSC
T ss_pred ecCCCCCccHHHHHHHhhheeccccc
Confidence 998742 34455555555444454
No 41
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=29.02 E-value=48 Score=31.82 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=41.3
Q ss_pred CeEeecCchhHHHHhcCCccC-------CcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCC
Q 013117 119 TMFVSSGIADLDKILGGGFPL-------GSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPS 178 (449)
Q Consensus 119 ~~~iSTGIp~LD~lLGGGLPl-------GS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~ 178 (449)
+..++.++..|+.++|++.-- |.++++.+.++.| +++++...+..=..+|+++++++.+
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~G-KTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 70 EWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTG-KTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSS-TTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCC-HHHHHHHHHHHHHHCCCeEEEEecC
Confidence 556889999999999986311 7788888776666 3455555444434568899998764
No 42
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=24.76 E-value=65 Score=33.73 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=34.1
Q ss_pred hhHHHHhcC-CccCCcEEEEeecCCCChHHHHHHHHHHhhhhcCCcEEEEcCC
Q 013117 127 ADLDKILGG-GFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHGQPLLYASPS 178 (449)
Q Consensus 127 p~LD~lLGG-GLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl~~g~~vl~vs~~ 178 (449)
++||.+++| +-....++++.+.++.| ++++...++..=...|+++++++.+
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~G-ktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVG-KTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCC-hhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 889999886 33344566666666665 3455555555545679999999875
No 43
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.27 E-value=42 Score=28.77 Aligned_cols=41 Identities=7% Similarity=-0.058 Sum_probs=30.3
Q ss_pred CccCCcEEEEeecCCCChHHHHHHHHHHhhh-hcCCcEEEEcC
Q 013117 136 GFPLGSLVMVMEDAEAPHHMLLLRNFMSQGL-VHGQPLLYASP 177 (449)
Q Consensus 136 GLPlGS~lLIeEd~~t~~~~~LlkyFlAEGl-~~g~~vl~vs~ 177 (449)
.++.|..++|.|+.++| +++|++.++.+-. ..|..+++++.
T Consensus 34 ~~~~g~~~~l~G~~G~G-KTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVG-KTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CGGGCCEEEECCSSSSS-HHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred cccCCCEEEEECCCCCC-HHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 56778999999888887 4667777766654 56778887763
Done!