BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013118
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 102 DHDHADIVLAIRGLNLAKESDYQLLLDNKLGKKKFD------GGYVHNGLLKAAGRVLDE 155
D +I+ RG SD L LD FD VH G V D+
Sbjct: 55 DDTSKEIITVFRGTG----SDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQ 110
Query: 156 ECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQL 198
++K Q +YP+Y LT GHSLG+ +AA+ A + D +
Sbjct: 111 VESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNV 153
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 102 DHDHADIVLAIRGLNLAKESDYQLLLDNKLGKKKFD------GGYVHNGLLKAAGRVLDE 155
D +I+ RG SD L LD FD VH G V D+
Sbjct: 55 DDTSKEIITVFRGTG----SDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQ 110
Query: 156 ECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQL 198
++K Q +YP+Y LT GHSLG+ +AA+ A + D +
Sbjct: 111 VESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNV 153
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 102 DHDHADIVLAIRGLNLAKESDYQLLLDNKLGKKKFD------GGYVHNGLLKAAGRVLDE 155
D +I+ RG SD L LD FD VH G V D+
Sbjct: 55 DDTSKEIITVFRGTG----SDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQ 110
Query: 156 ECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQL 198
++K Q +YP+Y LT GHSLG+ +AA+ A + D +
Sbjct: 111 VESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNV 153
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 138 GGYVHNGLLKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQ 197
G VH G L + G V +E + Q ++YP+Y + GHSLG A + AL + Q +
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 198 LAN 200
L++
Sbjct: 164 LSS 166
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 138 GGYVHNGLLKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQ 197
G VH G L + G V +E + Q ++YP+Y + GHSLG A + AL + Q +
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 198 LAN 200
L++
Sbjct: 164 LSS 166
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 138 GGYVHNGLLKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQ 197
G VH G L + G V +E + Q ++YP+Y + GHSLG A + AL + Q +
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 198 LAN 200
L++
Sbjct: 164 LSS 166
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 102 DHDHADIVLAIRGLNLAKESDYQLLLDNKLGKKKFD------GGYVHNGLLKAAGRVLDE 155
D +I+ RG SD L LD FD VH G V D+
Sbjct: 55 DDTSKEIITVFRGTG----SDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQ 110
Query: 156 ECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQL 198
++K Q +YP+Y LT GH+LG+ +AA+ A + D +
Sbjct: 111 VESLVKQQASQYPDYALTVTGHALGASMAALTAAQLSATYDNV 153
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68 WAPPGGYGINPDWLLLRKTYEDTGGRAPPYILYLDHDHADIVLAIRGLNLAKESDYQLLL 127
W P G LL DT G Y+L D I L RG N + + ++
Sbjct: 46 WVPDGKIITTFTSLL-----SDTNG----YVLRSDKQKT-IYLVFRGTNSFRSAITDIVF 95
Query: 128 DNKLGKKKFDGGYVHNGLLKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAML 187
N K G VH G L + +V+++ V++ Q+ +P Y + GHSLG A +
Sbjct: 96 -NFSDYKPVKGAKVHAGFLSSYEQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLA 154
Query: 188 ALVVVQNRDQLA 199
+ + Q +L+
Sbjct: 155 GMDLYQREPRLS 166
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 138 GGYVHNGLLKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQ 197
G VH G L + G V +E + Q ++YP+Y + GHSLG + AL + Q +
Sbjct: 104 GTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEG 163
Query: 198 LAN 200
L++
Sbjct: 164 LSS 166
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 10/159 (6%)
Query: 86 TYEDTGGRAPPYILYLDHDHADIVLAIRGLNLAKESDYQLLLDNKLGKKKFDGGYVHNGL 145
++ED+G L LD+ + IVL+ RG + L D K G H+G
Sbjct: 54 SFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGF 113
Query: 146 LKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQLANIDRKR 205
+ V D + ++ V ++P+Y + F GHSLG AL V D N
Sbjct: 114 TSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGG------ALATVAGADLRGNGYDID 167
Query: 206 VRCYAIAP---ARCMSLNLAVRYADVINSVVLQDDFLPR 241
V Y AP R + L V+ + + +D +PR
Sbjct: 168 VFSYG-APRVGNRAFAEFLTVQTGGTLYRITHTNDIVPR 205
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 10/159 (6%)
Query: 86 TYEDTGGRAPPYILYLDHDHADIVLAIRGLNLAKESDYQLLLDNKLGKKKFDGGYVHNGL 145
++ED+G L LD+ + IVL+ RG + L D K G H+G
Sbjct: 54 SFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGF 113
Query: 146 LKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQNRDQLANIDRKR 205
+ V D + ++ V ++P+Y + F GH+LG AL V D N
Sbjct: 114 TSSWRSVADTLRQKVEDAVREHPDYRVVFTGHALGG------ALATVAGADLRGNGYDID 167
Query: 206 VRCYAIAP---ARCMSLNLAVRYADVINSVVLQDDFLPR 241
V Y AP R + L V+ + + +D +PR
Sbjct: 168 VFSYG-APRVGNRAFAEFLTVQTGGTLYRITHTNDIVPR 205
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 99 LYLDHDHADIVLAIRGLNLAKE--SDYQL---------LLDNKLGKKKFDGGYVHNGLLK 147
L +DH I L IRG + ++ +D ++ L N D VHNG ++
Sbjct: 72 LAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQ 131
Query: 148 AAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLAL 189
+ ++ L +E+YP+Y + GHSLG A + +
Sbjct: 132 SYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGI 173
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 85 KTYEDTGGRAPPYILYLDHDHADIVLAIRGLNLAKE--SDYQLLLDNKLGKKKFDGGYVH 142
T DT G YI +DH ++ +VLA RG + +D + N DG
Sbjct: 58 STITDTAG----YIA-VDHTNSAVVLAFRGSYSVRNWVADATFVHTNP---GLCDGCLAE 109
Query: 143 NGLLKAAGRVLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLA 188
G + V D+ + LK V + PNY L GHSLG+ VA + A
Sbjct: 110 LGFWSSWKLVRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAA 155
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 152 VLDEECEVLKHQVEKYPNYTLTFAGHSLGSGVAAMLALVVVQN 194
V D +K + KYP+YTL GHSLG + ++ + + QN
Sbjct: 106 VHDTIITEVKALIAKYPDYTLEAVGHSLGGALTSIAHVALAQN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,558,782
Number of Sequences: 62578
Number of extensions: 559679
Number of successful extensions: 1180
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 16
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)