Query 013119
Match_columns 449
No_of_seqs 256 out of 1258
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 4.9E-53 1.7E-57 422.5 23.7 313 39-425 15-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 7.1E-49 2.4E-53 380.0 17.9 257 142-435 6-267 (270)
3 4fp9_B Mterf domain-containing 100.0 2.1E-36 7.3E-41 298.0 19.7 225 177-442 46-278 (335)
4 3m66_A Mterf3, mterf domain-co 100.0 8.6E-34 3E-38 274.2 20.2 212 110-362 6-224 (270)
5 3mva_O Transcription terminati 100.0 6.9E-33 2.4E-37 276.7 18.0 274 107-423 17-310 (343)
6 4fp9_B Mterf domain-containing 99.9 1.1E-26 3.7E-31 228.9 18.5 183 138-366 43-227 (335)
7 4fzv_B Mterf domain-containing 99.4 1.1E-11 3.6E-16 104.4 14.3 180 213-428 33-219 (239)
8 4fzv_B Mterf domain-containing 98.8 2.5E-08 8.6E-13 84.0 11.7 150 140-297 32-183 (239)
9 3ugm_A TAL effector avrbs3/PTH 93.6 0.65 2.2E-05 48.7 12.5 270 50-341 215-503 (1047)
10 3ugm_A TAL effector avrbs3/PTH 93.0 0.14 4.9E-06 53.5 6.7 16 50-65 283-298 (1047)
11 4hpz_A Dtale2; DNA binding pro 93.0 0.47 1.6E-05 46.0 9.8 44 52-99 9-52 (463)
12 4ae4_A Ubiquitin-associated pr 92.3 0.59 2E-05 38.2 8.3 50 45-99 10-65 (118)
13 1oqy_A HHR23A, UV excision rep 90.1 0.29 9.8E-06 48.3 5.1 41 72-117 164-204 (368)
14 4hpz_A Dtale2; DNA binding pro 88.9 4.3 0.00015 39.4 11.9 146 49-201 35-188 (463)
15 3ff5_A PEX14P, peroxisomal bio 88.2 0.66 2.3E-05 32.2 4.3 31 133-163 22-52 (54)
16 4ae4_A Ubiquitin-associated pr 87.7 6.1 0.00021 32.1 10.7 22 78-99 10-31 (118)
17 3ff5_A PEX14P, peroxisomal bio 87.6 0.54 1.8E-05 32.6 3.6 28 315-342 27-54 (54)
18 2w84_A Peroxisomal membrane pr 83.8 0.96 3.3E-05 33.0 3.5 33 132-164 26-58 (70)
19 3dfg_A Xcrecx, regulatory prot 83.3 8.1 0.00028 33.1 10.0 127 74-237 32-159 (162)
20 3e3v_A Regulatory protein RECX 81.5 10 0.00035 32.9 10.1 77 73-165 32-110 (177)
21 2w84_A Peroxisomal membrane pr 80.1 1.3 4.3E-05 32.4 3.0 28 315-342 32-59 (70)
22 3v6t_A DHAX3; tandem repeats, 79.0 6.5 0.00022 38.6 8.4 44 223-269 269-313 (499)
23 3v6t_A DHAX3; tandem repeats, 78.6 14 0.00047 36.3 10.5 170 187-372 269-447 (499)
24 1oqy_A HHR23A, UV excision rep 76.0 2 7E-05 42.2 4.1 45 106-155 165-209 (368)
25 3d5l_A Regulatory protein RECX 74.4 33 0.0011 30.8 11.6 129 73-236 75-205 (221)
26 1ify_A HHR23A, UV excision rep 69.7 5.3 0.00018 26.9 3.8 39 317-362 7-45 (49)
27 1ify_A HHR23A, UV excision rep 68.5 11 0.00037 25.3 5.2 23 77-99 9-31 (49)
28 3idw_A Actin cytoskeleton-regu 68.3 7.3 0.00025 28.5 4.5 53 144-199 5-59 (72)
29 2ooa_A E3 ubiquitin-protein li 66.2 4.7 0.00016 27.5 2.9 27 315-341 8-34 (52)
30 1uxc_A FRUR (1-57), fructose r 65.7 9.7 0.00033 27.2 4.8 46 255-300 6-51 (65)
31 2knz_A Ubiquilin-4; cytoplasm, 64.9 9.5 0.00033 26.1 4.4 12 140-151 39-50 (53)
32 3idw_A Actin cytoskeleton-regu 64.6 6.6 0.00023 28.7 3.6 52 47-99 6-60 (72)
33 2g3q_A Protein YBL047C; endocy 60.0 5.7 0.00019 25.8 2.4 22 320-341 6-27 (43)
34 3c1d_A Protein ORAA, regulator 59.2 53 0.0018 27.7 9.2 54 112-165 52-106 (159)
35 1wgn_A UBAP1, ubiquitin associ 58.7 5 0.00017 28.4 2.0 37 45-86 21-57 (63)
36 2ekk_A UBA domain from E3 ubiq 58.2 11 0.00039 24.9 3.8 35 320-362 11-45 (47)
37 1z96_A DNA-damage, UBA-domain 57.8 11 0.00037 23.7 3.5 24 319-342 5-28 (40)
38 2oo9_A E3 ubiquitin-protein li 57.4 12 0.0004 24.8 3.5 24 317-340 3-26 (46)
39 2knz_A Ubiquilin-4; cytoplasm, 56.8 13 0.00043 25.5 3.8 26 315-340 8-34 (53)
40 2dak_A Ubiquitin carboxyl-term 54.7 18 0.00062 25.5 4.6 39 319-364 10-48 (63)
41 1veg_A NEDD8 ultimate buster-1 53.8 18 0.00063 27.3 4.6 40 319-365 30-69 (83)
42 2juj_A E3 ubiquitin-protein li 52.0 17 0.00058 25.0 3.7 25 316-340 5-29 (56)
43 1wgn_A UBAP1, ubiquitin associ 51.6 16 0.00053 25.9 3.6 39 319-364 20-58 (63)
44 2d9s_A CBL E3 ubiquitin protei 51.0 15 0.00053 25.1 3.4 23 319-341 10-32 (53)
45 1wji_A Tudor domain containing 50.6 13 0.00044 26.5 3.2 38 319-363 10-47 (63)
46 1uxc_A FRUR (1-57), fructose r 50.4 11 0.00039 26.8 2.9 48 48-95 4-54 (65)
47 1vg5_A RSGI RUH-014, rhomboid 49.2 10 0.00035 28.0 2.5 37 319-362 30-66 (73)
48 2l8n_A Transcriptional repress 47.8 23 0.00078 25.4 4.2 44 254-300 14-57 (67)
49 2cos_A Serine/threonine protei 47.7 17 0.00059 24.9 3.2 41 252-298 12-52 (54)
50 2l8n_A Transcriptional repress 46.8 17 0.00059 26.0 3.4 52 45-96 10-61 (67)
51 1wiv_A UBP14, ubiquitin-specif 45.2 19 0.00063 26.5 3.4 38 319-363 30-67 (73)
52 2ef8_A C.ECOT38IS, putative tr 43.5 46 0.0016 23.9 5.6 25 349-373 51-75 (84)
53 1wji_A Tudor domain containing 42.6 44 0.0015 23.6 4.9 23 77-99 10-32 (63)
54 2cos_A Serine/threonine protei 41.1 24 0.00083 24.2 3.1 18 80-97 13-30 (54)
55 2cpw_A CBL-interacting protein 41.0 30 0.001 24.6 3.9 37 321-363 22-58 (64)
56 3dfg_A Xcrecx, regulatory prot 40.9 1.6E+02 0.0055 24.7 14.1 134 181-343 24-160 (162)
57 2jy5_A Ubiquilin-1; UBA, alter 40.2 15 0.00052 24.9 2.1 14 283-296 11-24 (52)
58 2lbc_A Ubiquitin carboxyl-term 40.2 81 0.0028 25.4 7.0 40 43-86 3-42 (126)
59 2jy5_A Ubiquilin-1; UBA, alter 40.0 74 0.0025 21.4 5.6 12 77-88 13-24 (52)
60 3e3v_A Regulatory protein RECX 39.6 1.8E+02 0.0061 24.8 12.1 127 187-341 31-162 (177)
61 1vg5_A RSGI RUH-014, rhomboid 38.8 49 0.0017 24.2 4.8 26 74-99 27-52 (73)
62 1wr1_B Ubiquitin-like protein 38.3 53 0.0018 22.8 4.7 14 317-330 16-29 (58)
63 2ooa_A E3 ubiquitin-protein li 37.6 71 0.0024 21.7 5.0 18 46-64 14-31 (52)
64 2cp8_A NEXT to BRCA1 gene 1 pr 36.7 37 0.0013 23.3 3.6 19 281-299 6-24 (54)
65 2bwb_A Ubiquitin-like protein 36.2 38 0.0013 22.3 3.5 16 316-331 5-20 (46)
66 3oou_A LIN2118 protein; protei 35.8 1.1E+02 0.0037 23.3 7.0 54 42-95 19-78 (108)
67 1whc_A RSGI RUH-027, UBA/UBX 3 35.1 41 0.0014 23.8 3.8 42 41-86 7-48 (64)
68 1wj7_A Hypothetical protein (R 34.5 35 0.0012 26.9 3.6 44 313-363 34-78 (104)
69 3oio_A Transcriptional regulat 33.9 1.5E+02 0.0051 22.7 7.6 54 42-95 21-80 (113)
70 3d5l_A Regulatory protein RECX 33.4 2.5E+02 0.0087 24.8 13.4 132 183-341 70-205 (221)
71 1wr1_B Ubiquitin-like protein 33.0 41 0.0014 23.4 3.4 43 282-343 15-57 (58)
72 1dv0_A DNA repair protein HHR2 31.3 17 0.00057 24.2 1.1 21 321-341 7-27 (47)
73 3c1d_A Protein ORAA, regulator 31.3 2.3E+02 0.0078 23.6 10.7 134 182-339 13-154 (159)
74 2xzm_O RPS13E; ribosome, trans 31.3 53 0.0018 27.6 4.3 34 238-272 25-58 (153)
75 2k9s_A Arabinose operon regula 30.7 1.5E+02 0.0051 22.4 7.0 53 43-95 19-77 (107)
76 2dak_A Ubiquitin carboxyl-term 30.6 44 0.0015 23.5 3.3 39 42-85 8-46 (63)
77 1wiv_A UBP14, ubiquitin-specif 30.3 54 0.0019 23.9 3.9 41 42-87 28-68 (73)
78 2crn_A Ubash3A protein; compac 30.3 54 0.0018 23.2 3.8 44 40-87 6-49 (64)
79 3mkl_A HTH-type transcriptiona 30.2 1.7E+02 0.0058 22.7 7.4 27 42-68 21-47 (120)
80 2dag_A Ubiquitin carboxyl-term 30.0 45 0.0016 24.4 3.4 40 320-365 11-50 (74)
81 4gfj_A Topoisomerase V; helix- 28.8 2.4E+02 0.0082 27.9 9.1 17 145-161 549-565 (685)
82 2dai_A Ubadc1, ubiquitin assoc 28.6 48 0.0016 24.9 3.4 39 320-365 31-69 (83)
83 3mn2_A Probable ARAC family tr 27.7 1.9E+02 0.0064 21.9 7.1 27 42-68 16-42 (108)
84 1vej_A Riken cDNA 4931431F19; 26.4 97 0.0033 22.7 4.6 15 283-297 28-42 (74)
85 1ixs_A Holliday junction DNA h 26.0 63 0.0021 22.7 3.4 24 76-99 17-40 (62)
86 3u5c_N S27A, YS15, 40S ribosom 25.9 54 0.0018 27.5 3.5 36 237-273 22-57 (151)
87 2dkl_A Trinucleotide repeat co 24.9 94 0.0032 23.3 4.5 22 78-99 23-44 (85)
88 2dah_A Ubiquilin-3; UBA domain 24.9 1.1E+02 0.0038 20.8 4.4 40 176-223 8-48 (54)
89 2dkl_A Trinucleotide repeat co 24.7 62 0.0021 24.4 3.4 38 319-363 22-59 (85)
90 1bl0_A Protein (multiple antib 24.4 1.7E+02 0.006 23.0 6.5 54 42-95 25-84 (129)
91 2jt1_A PEFI protein; solution 23.8 1.7E+02 0.0059 21.3 5.7 46 281-330 3-53 (77)
92 1vek_A UBP14, ubiquitin-specif 23.6 67 0.0023 24.1 3.4 40 320-365 31-70 (84)
93 1veg_A NEDD8 ultimate buster-1 22.6 1.2E+02 0.004 22.8 4.6 37 44-85 30-66 (83)
94 2dai_A Ubadc1, ubiquitin assoc 22.6 79 0.0027 23.7 3.6 41 41-86 27-67 (83)
95 3b7h_A Prophage LP1 protein 11 21.9 1E+02 0.0035 21.5 4.2 16 360-375 56-71 (78)
96 2dna_A Unnamed protein product 21.4 66 0.0023 23.1 2.8 19 315-333 16-34 (67)
97 3ayh_A DNA-directed RNA polyme 21.3 1.3E+02 0.0046 24.6 5.1 44 231-275 60-103 (136)
98 4gfj_A Topoisomerase V; helix- 20.9 1.3E+02 0.0043 29.9 5.4 55 108-163 462-517 (685)
99 3oq9_A Tumor necrosis factor r 20.5 2.7E+02 0.0093 20.8 7.5 58 249-308 12-69 (86)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.9e-53 Score=422.48 Aligned_cols=313 Identities=17% Similarity=0.245 Sum_probs=237.3
Q ss_pred cCCCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 013119 39 ITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKS 118 (449)
Q Consensus 39 ~~~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~ 118 (449)
++.++..+|.|| ++||++.++|.++.+++.+.++++++++++||+++|+++++|++++.++|.
T Consensus 15 ~~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~---------------- 77 (343)
T 3mva_O 15 EPLKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPR---------------- 77 (343)
T ss_dssp -----CCHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGG----------------
T ss_pred CccccHHHHHHH-HHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcH----------------
Confidence 445677889999 799999999999999998899999999999999999999999888777443
Q ss_pred cCCChHHHHHHHHhhhhhhcc---chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcc-cchhhHHHHHHHcCCChHHH
Q 013119 119 LGITGANLAEMLNKEHRVLES---DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLK-KCMKPKLEFFKSLGFAELQM 194 (449)
Q Consensus 119 lG~~~~~l~~~i~~~P~lL~~---~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e-~~l~pkl~fL~~lG~s~~~i 194 (449)
+|.. ++.++++||+++|++++++++++.++|++|..+.+ +++.|+++||+++|++.+++
T Consensus 78 -----------------lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i 140 (343)
T 3mva_O 78 -----------------AITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCL 140 (343)
T ss_dssp -----------------GGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred -----------------HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHH
Confidence 3322 24455666666666666666777777774333333 36777777777777777777
Q ss_pred HHHHHhCCcceeccccccchHHHHHHHHhcCC------hHHHHHHHHhCCcccccchhhhhHHHHHHHHh-CCCChHHHH
Q 013119 195 AKFLSSQPYILERSLENHIIPCIEILRRVLDT------DENVLKAIRAGCLVLEYDIEKVLEPNIAILVN-HGVPKSLVV 267 (449)
Q Consensus 195 ~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~------~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~i~ 267 (449)
++++.++|++|+++++++ +++++||+++|++ .+.|.+++.++|++++.+ +++++++++||++ +|++.+++.
T Consensus 141 ~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~ 218 (343)
T 3mva_O 141 CRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELL 218 (343)
T ss_dssp HHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHH
Confidence 777777777777776654 7777777766542 456777777777777777 3447777777774 777777777
Q ss_pred HHHhhcC-ccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccc
Q 013119 268 KLMLIQP-RTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFM 346 (449)
Q Consensus 268 ~li~~~P-~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL 346 (449)
.++...| .++..+.+.+++++.++ .++|.++|||++|+..|+.++|++|
T Consensus 219 ~~i~~~~~~~l~~s~~~l~~~~~~l------------------------------~e~~~~lG~s~~ev~~~v~~~P~il 268 (343)
T 3mva_O 219 VLICGPGAEILDLSNDYARRSYANI------------------------------KEKLFSLGCTEEEVQKFVLSYPDVI 268 (343)
T ss_dssp HHHHTTTGGGGGCCTTHHHHHHHHH------------------------------HHHHHTTTCCHHHHHHHHHTCGGGG
T ss_pred HHHhcCChHHhhccHHHHHHHHHHH------------------------------HHHHHHcCCCHHHHHHHHHhCCchh
Confidence 6666544 45555544444433333 2345579999999999999999999
Q ss_pred ccChHHHHhHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHHHHHHHCCCCCCCcchh--hhccccHHHHHHHHh
Q 013119 347 IVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLT--YMFKMTEKQFIERIV 424 (449)
Q Consensus 347 ~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl~~~~~~l~--~~l~~se~~F~~~~v 424 (449)
++|+|+|++|++||++ ||++.++|+++|++|+||+| ||+||| ++|+++|+ ++++. +||++||++|.++|.
T Consensus 269 ~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~---~~L~~~g~---~~~~~~~~~l~~s~~~F~~~~~ 340 (343)
T 3mva_O 269 FLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRI---KELVNAGC---NLSTLNITLLSWSKKRYEAKLK 340 (343)
T ss_dssp GSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHH---HHHHTTTC---CSSSSCGGGGGSCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHH---HHHHHCCC---CCCCCcchhhcCCHHHHHHHHh
Confidence 9999999999999999 99999999999999999999 999999 67789998 45555 999999999999996
Q ss_pred h
Q 013119 425 K 425 (449)
Q Consensus 425 ~ 425 (449)
+
T Consensus 341 ~ 341 (343)
T 3mva_O 341 K 341 (343)
T ss_dssp H
T ss_pred c
Confidence 4
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=7.1e-49 Score=380.03 Aligned_cols=257 Identities=20% Similarity=0.303 Sum_probs=239.3
Q ss_pred hhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHH
Q 013119 142 YATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILR 221 (449)
Q Consensus 142 ~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~ 221 (449)
.++++||.++|++..+|.+....+|.+|.+++++++.|+++||.++|++++++++++.++|++|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 4789999999999999998888888889999999999999999999999999999999999999999997 999999999
Q ss_pred HhcCChHHHHHHHHhCCcccccchhhhhHHHHHHH-HhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013119 222 RVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 222 ~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L-~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
++|++++++.+++.++|++|+.++++ ++++++|| .++|++.+++.+++.++|.+++.+.+
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e------------------ 145 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE------------------ 145 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH------------------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH------------------
Confidence 99999999999999999999999997 99999999 57999999999999999999988754
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHhhCCceec
Q 013119 301 LLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL 379 (449)
Q Consensus 301 ~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ 379 (449)
+++++++++. ++|||.+|+..|+.++|++|++|.++|+++++||+++||++.++|+++|++|+
T Consensus 146 ----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~ 209 (270)
T 3m66_A 146 ----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFN 209 (270)
T ss_dssp ----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred ----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence 4556667654 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHCCCCCCC---cchhhhccccHHHHHHHHhhcCCCchhHHH
Q 013119 380 FSLEKRILPRCSVLQLLMSNKVITED---FSLTYMFKMTEKQFIERIVKKYEHKVPKVV 435 (449)
Q Consensus 380 ~Sle~ri~pR~~~l~~L~~~Gl~~~~---~~l~~~l~~se~~F~~~~v~~~~~~~p~l~ 435 (449)
||+| ||+|||.++++|.++|+..++ +++.+++.+||++|+++|++.+.|+.-...
T Consensus 210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~ 267 (270)
T 3m66_A 210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL 267 (270)
T ss_dssp SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999 999999999999999997655 678889999999999999999987665443
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=298.05 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=161.1
Q ss_pred hhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHH
Q 013119 177 MKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL 256 (449)
Q Consensus 177 l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L 256 (449)
+...+.+|.++|+++.+|++++.++|.++.. ++.+.+.||..+|++.++|.++|.++|++|+.++++ ++++++||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence 3344444555555555555555555554432 244455555555555555555555555555555554 66666666
Q ss_pred HhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHH
Q 013119 257 VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEV 335 (449)
Q Consensus 257 ~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev 335 (449)
+++|++.+++.+++.++|++|+++. +.++.++.+|. ++|||.+||
T Consensus 121 ~~lGl~~~~i~~ll~~~P~lL~~s~----------------------------------e~i~~~v~~L~~~lGfS~~ev 166 (335)
T 4fp9_B 121 QKLGLGEGKLKRVLYCCPEIFTMRQ----------------------------------QDINDTVRLLKEKCLFTVQQV 166 (335)
T ss_dssp HHTTCTTTTHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHHTSCCCHHHH
T ss_pred HHcCCCHHHHHHHHHhCchhhccCh----------------------------------HHHHHHHHHHHHHcCCCHHHH
Confidence 6666666666666666666655543 33344555565 799999999
Q ss_pred HHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHHHHHHHCCC-------CCCCcch
Q 013119 336 YSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKV-------ITEDFSL 408 (449)
Q Consensus 336 ~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl-------~~~~~~l 408 (449)
..||.++|+||++|.++|++|++||+++||+++.+|++ |.+|+||++ ||+|||.+|+.|..... ..++++|
T Consensus 167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL 244 (335)
T 4fp9_B 167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL 244 (335)
T ss_dssp HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence 99999999999999999999999999999999999998 999999999 99999988776643211 2246789
Q ss_pred hhhccccHHHHHHHHhhcCCCchhHHHHHHhccc
Q 013119 409 TYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKI 442 (449)
Q Consensus 409 ~~~l~~se~~F~~~~v~~~~~~~p~l~~~y~~~~ 442 (449)
.+++..||++|+.++.+...++.-...+.+....
T Consensus 245 ~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~e~ 278 (335)
T 4fp9_B 245 KDILRVSEAEFLARTACTSVEEFQVFKKLLAREE 278 (335)
T ss_dssp HHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence 9999999999999999999988888888876544
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=8.6e-34 Score=274.18 Aligned_cols=212 Identities=13% Similarity=0.236 Sum_probs=194.1
Q ss_pred hhHHHHHHHcCCChHHHHHHHHhhhhhhcc----chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHH
Q 013119 110 EPNLKLFKSLGITGANLAEMLNKEHRVLES----DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK 185 (449)
Q Consensus 110 ~~~l~~L~~lG~~~~~l~~~i~~~P~lL~~----~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~ 185 (449)
.+++++|.++|++.+++.+...-+|.+|.. ++.++++||+++|+++++|++++.++|++|.+++++ +.|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 478888888999988887777777777875 467899999999999999999999999999999987 999999999
Q ss_pred HcCCChHHHHHHHHhCCcceeccccccchHHHHHH-HHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHH-HhCCCCh
Q 013119 186 SLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL-RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPK 263 (449)
Q Consensus 186 ~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL-~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L-~~lGv~~ 263 (449)
++|++.+++++++.++|++|++|++ +++|+++|| .++|++.+++.+++.++|++++.+.++ ++++++++ +++|++.
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s~ 162 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKH 162 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCCH
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCCH
Confidence 9999999999999999999999998 599999999 579999999999999999999999998 99999975 6799999
Q ss_pred HHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcC
Q 013119 264 SLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQ 342 (449)
Q Consensus 264 ~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~ 342 (449)
++|.+++.++|.++++| .+++++|++|+. ++||+.++|. ++
T Consensus 163 ~ei~~~v~~~P~il~~s----------------------------------~~~l~~k~~fL~~~mg~~~~~i~----~~ 204 (270)
T 3m66_A 163 NEIQHMITRIPKMLTAN----------------------------------KMKLTETFDFVHNVMSIPHHIIV----KF 204 (270)
T ss_dssp HHHHHHHHHCGGGGTSC----------------------------------HHHHHHHHHHHHTTSCCCHHHHH----HC
T ss_pred HHHHHHHHhCChhheec----------------------------------HHHHHHHHHHHHHHhCCCHHHHH----hC
Confidence 99999999999998875 566777778886 7999999887 89
Q ss_pred CcccccChHHHHhHHHHHHH
Q 013119 343 PMFMIVSEQKISKLMDCYVN 362 (449)
Q Consensus 343 P~iL~~S~e~l~~k~~fL~~ 362 (449)
|++|+||.|+|+++++|+..
T Consensus 205 P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 205 PQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp GGGGGSCHHHHHHHHHHHHH
T ss_pred chHhhCCHHHHHHHHHHHHH
Confidence 99999999999999999886
No 5
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=6.9e-33 Score=276.65 Aligned_cols=274 Identities=14% Similarity=0.188 Sum_probs=232.5
Q ss_pred CChhhHHHHHHHcCCChHHHHHHHHhhhhhhcc---chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHH
Q 013119 107 DTLEPNLKLFKSLGITGANLAEMLNKEHRVLES---DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEF 183 (449)
Q Consensus 107 ~~l~~~l~~L~~lG~~~~~l~~~i~~~P~lL~~---~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~f 183 (449)
.+-..+++||.++|++.++ ++..+|.++.. +++++++||+++|++.++|++++.++|++|.+++ +++.|+++|
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f 92 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL 92 (343)
T ss_dssp ---CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence 3457899999999999665 46779999865 6789999999999999999999999999999996 689999999
Q ss_pred HHHcCCChHHHHHHHHhCCcc-eeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCC
Q 013119 184 FKSLGFAELQMAKFLSSQPYI-LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 262 (449)
Q Consensus 184 L~~lG~s~~~i~~il~~~P~i-L~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~ 262 (449)
|+++|++++++++++.++|++ ++.+.++++.|+++||+++|++.+++.+++.++|+++++++++ +++++++|+++|++
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~ 171 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLS 171 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCC
Confidence 999999999999999999995 4554334899999999999999999999999999999999999 59999999987764
Q ss_pred ------hHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHH
Q 013119 263 ------KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEV 335 (449)
Q Consensus 263 ------~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev 335 (449)
.+.|.+++.++|.+++.+ +++++++++|++ ++|++.+++
T Consensus 172 ~g~~~p~~~I~~il~~~P~iL~~s----------------------------------~~~i~~~v~fL~~~~G~~~~~~ 217 (343)
T 3mva_O 172 LGHNDPADFVRKIIFKNPFILIQS----------------------------------TKRVKANIEFLRSTFNLNSEEL 217 (343)
T ss_dssp TTCSCHHHHHHHHHHHCGGGGGSC----------------------------------HHHHHHHHHHHHHHSCCCHHHH
T ss_pred cCCCcHHHHHHHHHHhCChHhcCC----------------------------------HHHHHHHHHHHHHHcCCCHHHH
Confidence 778999999999998875 456667777777 588888899
Q ss_pred HHHHhcC-CcccccChHHHHhHHHHHHH---hcCCChHHH----hhCCceeccCCCCcchhHHHHHHHHHHCCCCCCC-c
Q 013119 336 YSAFRRQ-PMFMIVSEQKISKLMDCYVN---KLSMEPLII----SKHPYLLLFSLEKRILPRCSVLQLLMSNKVITED-F 406 (449)
Q Consensus 336 ~~~v~~~-P~iL~~S~e~l~~k~~fL~~---~mg~~~~~i----~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl~~~~-~ 406 (449)
..++.+. |.++.++.+.++++++|+.+ ++|++.++| .++|.+|++|.|+ |+|++.++ .+.|+...+ .
T Consensus 218 ~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl---~~mg~~~~~i~ 293 (343)
T 3mva_O 218 LVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCL---MEENISISQII 293 (343)
T ss_dssp HHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHH---HTTTCCHHHHH
T ss_pred HHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHH---HHcCCCHHHHH
Confidence 9999885 58999999999999999997 789998875 7999999999995 99999655 457764322 2
Q ss_pred chhhhccccHHHHHHHH
Q 013119 407 SLTYMFKMTEKQFIERI 423 (449)
Q Consensus 407 ~l~~~l~~se~~F~~~~ 423 (449)
....++..|-++-..|+
T Consensus 294 ~~P~~l~~sleri~~R~ 310 (343)
T 3mva_O 294 ENPRVLDSSISTLKSRI 310 (343)
T ss_dssp HSGGGGGSCHHHHHHHH
T ss_pred hCCHHHhcCHHHHHHHH
Confidence 35567777776666555
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=228.91 Aligned_cols=183 Identities=13% Similarity=0.161 Sum_probs=169.0
Q ss_pred ccchhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHH
Q 013119 138 ESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCI 217 (449)
Q Consensus 138 ~~~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v 217 (449)
..+++.++.+|.++|+++++|++++.++|.++. .++.+++.||..+|++.++|+++|.++|++|++|++ +|++++
T Consensus 43 ~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l 117 (335)
T 4fp9_B 43 SLELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRS 117 (335)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHH
T ss_pred cccHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHH
Confidence 356889999999999999999999999999974 568899999999999999999999999999999987 699999
Q ss_pred HHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCC
Q 013119 218 EILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGF 296 (449)
Q Consensus 218 ~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~ 296 (449)
+||+++|++.+++.+++.++|++++++.++ ++.++.+|+ ++|++.++|.+|+.++|.+|.++
T Consensus 118 ~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S---------------- 180 (335)
T 4fp9_B 118 SYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED---------------- 180 (335)
T ss_dssp HHHHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC----------------
T ss_pred HHHHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC----------------
Confidence 999999999999999999999999999998 999999986 59999999999999999999875
Q ss_pred CCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCC
Q 013119 297 DPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSM 366 (449)
Q Consensus 297 ~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~ 366 (449)
.++++.|++|+. +||++.++|. + |++|+||.++|++++.||.. +|.
T Consensus 181 ------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 181 ------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp ------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred ------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 567788888887 8999999987 3 99999999999999999997 576
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.37 E-value=1.1e-11 Score=104.44 Aligned_cols=180 Identities=14% Similarity=0.162 Sum_probs=139.5
Q ss_pred chHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHH
Q 013119 213 IIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVK 292 (449)
Q Consensus 213 l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~ 292 (449)
+...+.-+.-+|++++-+.-++++.|+++...... ++.+-.+|+.+|+....+.+++--||.++++....+.+.+..++
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllk 111 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLK 111 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHH
Confidence 33444445556777777777788888888777776 77777888888888877777777788887776655555544433
Q ss_pred hcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHh
Q 013119 293 KLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIIS 372 (449)
Q Consensus 293 ~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~ 372 (449)
+ ++-|+..++.+++..+|.++.-..-.+..|++|-.-.||+..-+|+
T Consensus 112 e---------------------------------kclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdiv 158 (239)
T 4fzv_B 112 E---------------------------------KCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIV 158 (239)
T ss_dssp H---------------------------------HSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHH
T ss_pred H---------------------------------hHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchh
Confidence 2 5678888888999999999999888999999999999999999999
Q ss_pred hCCceeccCCCCcchhHHHHHHHHHH------CCCCC-CCcchhhhccccHHHHHHHHhhcCC
Q 013119 373 KHPYLLLFSLEKRILPRCSVLQLLMS------NKVIT-EDFSLTYMFKMTEKQFIERIVKKYE 428 (449)
Q Consensus 373 ~~P~~L~~Sle~ri~pR~~~l~~L~~------~Gl~~-~~~~l~~~l~~se~~F~~~~v~~~~ 428 (449)
+. .||.||+. .|+.||-+++.|.. +|-.. .++-+.+++..||.+|+.+-.+..-
T Consensus 159 ks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsv 219 (239)
T 4fzv_B 159 KS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSV 219 (239)
T ss_dssp HT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCH
T ss_pred HH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccH
Confidence 86 89999998 89999998888753 23211 3567899999999999999875543
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.85 E-value=2.5e-08 Score=83.99 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=131.6
Q ss_pred chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHH
Q 013119 140 DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEI 219 (449)
Q Consensus 140 ~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~f 219 (449)
.+-..+.-|.-+|++++.+.-++.+.|++|...+ -+++.+-.||..+|+....+.+++-.||.|+.+.- .++...+..
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrl 109 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRL 109 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHH
Confidence 3445666677799999999999999999999998 46999999999999999999999999999999984 479999999
Q ss_pred HHH-hcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCC
Q 013119 220 LRR-VLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFD 297 (449)
Q Consensus 220 L~~-~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~ 297 (449)
|++ +.++..++.+++..+|.++..++.. ++-++.+.- .+|+.+.+|.+ ...+.++..+++.+.-++.++|--
T Consensus 110 lkekclftvqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivk-----seylqysltkikqrhiylerlgry 183 (239)
T 4fzv_B 110 LKEKCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLTKIKQRHIYLERLGRY 183 (239)
T ss_dssp HHHHSCCCHHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHHHHHHHHHHHHHHTCC
T ss_pred HHHhHHhhHHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhH-----HHHHHHHHHHHHHHHhHHHHhccc
Confidence 987 7899999999999999999999987 998888864 59999998765 356788889999999999988853
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=93.58 E-value=0.65 Score=48.73 Aligned_cols=270 Identities=15% Similarity=0.205 Sum_probs=135.0
Q ss_pred HHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHH----HhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHH-HcCCChH
Q 013119 50 LQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLL----RTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFK-SLGITGA 124 (449)
Q Consensus 50 L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L----~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~-~lG~~~~ 124 (449)
|...+|+|++++..+..+-- ...-++.|.+.+ +.+||+.++|-+|-..+---..-+.+...+..|. .-|++++
T Consensus 215 L~~~~~ls~~qVvaIAsn~g--GkqALeaV~~~lp~l~~~~gls~~qvVaIAsn~GGkQALeaV~~llp~L~~~~gls~~ 292 (1047)
T 3ugm_A 215 LCQAHGLTPAQVVAIASHDG--GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292 (1047)
T ss_dssp HHHSSCCCHHHHTTTTTSTT--HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHHHHHHHHSHHHHHHHCCCHH
T ss_pred HhhhcCCCHHHHHHHhhccc--hHHHHHHHHHhhhhhhhccCCCHHHHHHHHhcCcchHHHHHHHHHhhhhhccccCCHH
Confidence 33346777777776643210 012234444433 3588888888777553110000011122222332 3688888
Q ss_pred HHHHHHHhhhhhhccchhhHHHHH---H-HCCCChhhHhhHhhhCCceeecCcccchhhHHHHHH-HcCCChHHHHHHHH
Q 013119 125 NLAEMLNKEHRVLESDAYATVEFF---R-TNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK-SLGFAELQMAKFLS 199 (449)
Q Consensus 125 ~l~~~i~~~P~lL~~~l~~~l~fL---~-~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~-~lG~s~~~i~~il~ 199 (449)
++.++-+..-.- .-++.+.+.+ . +.|++++||..|-..+-.-=.. +++...+--|. ..|++++++.+|-.
T Consensus 293 qvvaIAsn~GGk--QALetV~~llp~L~~~~gltp~qvVaIAsn~GGkQAL---e~V~~llpvL~~~~gls~~qvVaIAs 367 (1047)
T 3ugm_A 293 QVVAIASHGGGK--QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL---ETVQRLLPVLCQAHGLTPDQVVAIAS 367 (1047)
T ss_dssp HHHHHHSSTTHH--HHHHHHHHHHHHHHHHTCCCHHHHHHHHSSSSCHHHH---HHHHHHHHHHHTTSCCCHHHHHHHHS
T ss_pred HHHHHHhcCchH--HHHHHHHHHHHHHHhhcCCCHHHheeecccCccHHHH---HHHHHHhhhhhhhccCCHHHhhhhhh
Confidence 887765321110 1133333222 2 4899999998877654421110 12333333444 47999999988766
Q ss_pred hCCcceeccccccchHHHHHHHH-hcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccc
Q 013119 200 SQPYILERSLENHIIPCIEILRR-VLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTL 277 (449)
Q Consensus 200 ~~P~iL~~s~~~~l~p~v~fL~~-~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL 277 (449)
....--. +| .+..-+--|.. .|++.++|.++-.. .. ..-++. +..-...|. ++|+++.+|.+|-...-.-
T Consensus 368 n~GGkQA--Le-~V~~llp~L~~~~gls~~~vvaiA~~-GG--~qALe~-V~~L~p~l~~~~glt~~qvv~IAsn~GGk- 439 (1047)
T 3ugm_A 368 NGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAIASN-GG--KQALET-VQRLLPVLCQAHGLTPDQVVAIASHDGGK- 439 (1047)
T ss_dssp STTHHHH--HH-HHHHHHHHHHTTSCCCHHHHHHHHHH-TH--HHHHHH-HHHHHHHHHTTSSCCHHHHHHHHSSTTTH-
T ss_pred cCchHHH--HH-HHHHhhhhhhhhcCCCHHHHHHHhcc-cc--hhHHHH-HhhccchhhhhcCCCHHHhhhhhccCchH-
Confidence 5433111 11 23333333333 58888888877753 11 012333 333334444 5899999988764322110
Q ss_pred eecchHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcC-----HHHHHHHHHHHH-HcCCCHHHHHHHHhc
Q 013119 278 LQSTARLNKIIDEVK-KLGFDPTNLLFVLAIRSMAVMS-----KALWEKKLEAYM-NFGLTKDEVYSAFRR 341 (449)
Q Consensus 278 ~~s~~~l~~~v~~l~-~lG~~~~~~~~~~a~~~i~~~s-----~~~l~~k~~~l~-~lG~s~~ev~~~v~~ 341 (449)
--.+.+.+.+-.|. .-|+++++.. .|.+.. -+.+..-...+. ..|||.+||..|...
T Consensus 440 -QALe~V~~llp~L~~~~glt~aqvV------aIAsn~GGkQALeaV~~llpvl~~~~gls~~qvvaiA~n 503 (1047)
T 3ugm_A 440 -QALETVQRLLPVLCQTHGLTPAQVV------AIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASN 503 (1047)
T ss_dssp -HHHHHHHHHHHHHHTTSCCCHHHHH------HHSSSTTHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHSS
T ss_pred -HHHHHHHHHhHHhhcccCCCHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 00133344444444 5677765532 122211 223333344455 589999999988743
No 10
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=93.05 E-value=0.14 Score=53.51 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=9.5
Q ss_pred HHHhcCCCHHHHHHhh
Q 013119 50 LQKSCGFSLESAVSAS 65 (449)
Q Consensus 50 L~~~~Gls~~~~~~~~ 65 (449)
|...+|||++++.++.
T Consensus 283 L~~~~gls~~qvvaIA 298 (1047)
T 3ugm_A 283 LCQAHGLTPDQVVAIA 298 (1047)
T ss_dssp HHHHHCCCHHHHHHHH
T ss_pred hhccccCCHHHHHHHH
Confidence 3344666666666664
No 11
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=93.02 E-value=0.47 Score=45.97 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=27.6
Q ss_pred HhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhh
Q 013119 52 KSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 52 ~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
..+|.|.+++.++..+.. ..+..--+.|-++||+..+|..|-++
T Consensus 9 ~~lgys~~q~~k~k~~~~----s~va~~h~~l~~~g~t~~~i~~is~~ 52 (463)
T 4hpz_A 9 RTLGYSQQQQEKIKPKVR----STVAQHHEALVGHGFTHAHIVALSQH 52 (463)
T ss_dssp GGGTCCHHHHHHHCGGGH----HHHHHHHHHHHHTTCCHHHHHHHTTS
T ss_pred HHhccCHHHHHHhhHHHH----HHHHHHHHHHHhcCCCHHHHHHhhcc
Confidence 467888888888865332 12233345566788888888765443
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.34 E-value=0.59 Score=38.21 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=32.6
Q ss_pred chHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHH------hCCCCHHHHHHHHhh
Q 013119 45 LTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLR------THGLTRSQINNFVTK 99 (449)
Q Consensus 45 ~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~------~~G~~~~~i~~il~~ 99 (449)
..|..|+ ++||+...+.++.+..- .+++..++||. +-|+++.++...+..
T Consensus 10 ~~v~~l~-~MGFp~~~~~kAl~~~g----~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~ 65 (118)
T 4ae4_A 10 QCVETVV-NMGYSYECVLRAMKAAG----ANIEQILDYLFAHGQLCEKGFDPLLVEEALEM 65 (118)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHC----cCHHHHHHHHHHhchhcccCCChhhhHHHHHh
Confidence 3566775 68888888888765332 36777777773 456666666555544
No 13
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.15 E-value=0.29 Score=48.29 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q 013119 72 TTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFK 117 (449)
Q Consensus 72 s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~ 117 (449)
+....+..++-|.++||+++++.+.++.. ..+....++||-
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~-----~nn~~~A~e~L~ 204 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRAS-----YNNPHRAVEYLL 204 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHS-----CSSTTHHHHTTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 34567888999999999999999988873 234555556553
No 14
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=88.92 E-value=4.3 Score=39.41 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=69.0
Q ss_pred HHHHhcCCCHHHHHHhhcccc-cC-CCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHH--cCCChH
Q 013119 49 DLQKSCGFSLESAVSASEKLR-VD-TTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKS--LGITGA 124 (449)
Q Consensus 49 ~L~~~~Gls~~~~~~~~~~~~-~~-s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~--lG~~~~ 124 (449)
-|. .+||+++++..++++.. +. -..+....+..| .+++.++|-.+-..+-....-..+.+...-|.. +|++.+
T Consensus 35 ~l~-~~g~t~~~i~~is~~~~al~~va~~y~~l~aal--~~lt~~~iV~ia~~~~g~~Al~a~~~~~~~L~~~p~~l~~~ 111 (463)
T 4hpz_A 35 ALV-GHGFTHAHIVALSQHPAALGTVAVKYQDMIAAL--PEATHEAIVGVGKQWSGACALEALLTVAGELRGPPLQLDTG 111 (463)
T ss_dssp HHH-HTTCCHHHHHHHTTSTHHHHHHHTTHHHHHHHS--TTCCHHHHHHHHTSTTTTHHHHHHHHHHHHHHSTTTCCCHH
T ss_pred HHH-hcCCCHHHHHHhhccHhHHHHHHHhhHHHHhhc--cccCHHHHHHHHhccchHHHHHHHHHHHHHhhcCccCCCHH
Confidence 354 59999999999987532 11 112233333333 667777777765553222111123333333433 578888
Q ss_pred HHHHHHHhhhhhhc-cchhhHHHHHHH--CCCChhhHhhHhhhCCceeecCcccchhhHHHHHHH-cCCChHHHHHHHHh
Q 013119 125 NLAEMLNKEHRVLE-SDAYATVEFFRT--NGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKS-LGFAELQMAKFLSS 200 (449)
Q Consensus 125 ~l~~~i~~~P~lL~-~~l~~~l~fL~~--lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~-lG~s~~~i~~il~~ 200 (449)
++..+.. +-.--. ..+.....-|.. +|++++|+.+|-...-.-=. + +.+.....-|+. .|+|++++.+|-+.
T Consensus 112 qiv~IA~-~Gg~~Aleav~~~~~~L~~apl~Lsp~qvVaIAsn~GGkqA--L-eaV~~llpvL~~a~~Ls~~qVVaIAsn 187 (463)
T 4hpz_A 112 QLLKIAK-RGGVTAVEVHHTWRNALTGAPLNLTPDQVVAIASNIGGKQA--L-ETVQRLLPVLCQDHGLTPQQVVAIASN 187 (463)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTHHHHHSTTTCCCHHHHHHHHSSTTHHHH--H-HHHHHHHHHHHHHHCCCHHHHHHHHTS
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCccHHH--H-HHHHHHHHHHhhhcCCCHHHHHHHhhc
Confidence 8777765 211100 111122222332 56666666665433221000 0 112222333333 56666666665443
Q ss_pred C
Q 013119 201 Q 201 (449)
Q Consensus 201 ~ 201 (449)
+
T Consensus 188 ~ 188 (463)
T 4hpz_A 188 G 188 (463)
T ss_dssp T
T ss_pred C
Confidence 3
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=88.16 E-value=0.66 Score=32.17 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=15.8
Q ss_pred hhhhhccchhhHHHHHHHCCCChhhHhhHhh
Q 013119 133 EHRVLESDAYATVEFFRTNGFSDSQIKSITV 163 (449)
Q Consensus 133 ~P~lL~~~l~~~l~fL~~lGl~~~~i~~il~ 163 (449)
.|.+-...+..+++||++-|++.++|...+.
T Consensus 22 dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 22 NSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp CTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444444455555555555555555554443
No 16
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=87.66 E-value=6.1 Score=32.07 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHhh
Q 013119 78 SVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 78 ~v~~~L~~~G~~~~~i~~il~~ 99 (449)
..++-|.++||+...+.+.+..
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~ 31 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKA 31 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4566777888888888877766
No 17
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.59 E-value=0.54 Score=32.62 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013119 315 KALWEKKLEAYMNFGLTKDEVYSAFRRQ 342 (449)
Q Consensus 315 ~~~l~~k~~~l~~lG~s~~ev~~~v~~~ 342 (449)
...+..|++||.+-|++.+||..++.|.
T Consensus 27 ~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 27 QSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp GSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3457889999999999999999988763
No 18
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=83.82 E-value=0.96 Score=33.03 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=18.4
Q ss_pred hhhhhhccchhhHHHHHHHCCCChhhHhhHhhh
Q 013119 132 KEHRVLESDAYATVEFFRTNGFSDSQIKSITVK 164 (449)
Q Consensus 132 ~~P~lL~~~l~~~l~fL~~lGl~~~~i~~il~~ 164 (449)
+.|.+-...+..+++||++-|++.++|...+.+
T Consensus 26 qdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 26 QNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp CSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444455555666666666666666555544
No 19
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=83.30 E-value=8.1 Score=33.06 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=69.6
Q ss_pred cCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHHcCC-ChHHHHHHHHhhhhhhccchhhHHHHHHHCC
Q 013119 74 DKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGI-TGANLAEMLNKEHRVLESDAYATVEFFRTNG 152 (449)
Q Consensus 74 ~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~lG~-~~~~l~~~i~~~P~lL~~~l~~~l~fL~~lG 152 (449)
.....+.+-|...|++++.|..+ ++.|.+.|+ +...+.....+.-.--........+-|+.-|
T Consensus 32 ~s~~EL~~KL~~kg~~~e~Ie~v----------------l~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KG 95 (162)
T 3dfg_A 32 HSKKELNRKLQARGIEPEAAQAA----------------VERLAGEGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHG 95 (162)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHH----------------HHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCCHHHHHHH----------------HHHHHHcCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcC
Confidence 44556677778888887777664 445777774 5555554443321111123445567788899
Q ss_pred CChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHHHH
Q 013119 153 FSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLK 232 (449)
Q Consensus 153 l~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~ 232 (449)
++.+.|...+..... +. ..--...+.. ++..--..+ ...-...+.||.+-|++.+.|..
T Consensus 96 I~~~~I~~al~~~~~----de---~e~a~~l~~K-------------k~~~~~~~~-~~~k~K~~~~L~rrGF~~~~I~~ 154 (162)
T 3dfg_A 96 LDSDAVSAAMATFEG----DW---TENALDLIRR-------------RFGEDGPVD-LAQRRKAADLLARRGFDGNSIRL 154 (162)
T ss_dssp CCHHHHHHHHTTCCS----CH---HHHHHHHHHH-------------HHCTTCCCS-HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHhCcH----hH---HHHHHHHHHH-------------hcCCCCCCC-HHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999888876531 11 1111111111 111100111 11233456788888888888877
Q ss_pred HHHhC
Q 013119 233 AIRAG 237 (449)
Q Consensus 233 ~l~~~ 237 (449)
++...
T Consensus 155 ~l~~~ 159 (162)
T 3dfg_A 155 ATRFD 159 (162)
T ss_dssp HTTC-
T ss_pred HHhcC
Confidence 76543
No 20
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=81.54 E-value=10 Score=32.93 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=48.8
Q ss_pred CcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHHcCC-ChHHHHHHHHhhhhhh-ccchhhHHHHHHH
Q 013119 73 TDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGI-TGANLAEMLNKEHRVL-ESDAYATVEFFRT 150 (449)
Q Consensus 73 ~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~lG~-~~~~l~~~i~~~P~lL-~~~l~~~l~fL~~ 150 (449)
...-..+.+-|...|++++.|..+ ++.|.+.|+ +...++....+.-.-- ........+-|+.
T Consensus 32 ~~S~~EL~~KL~~kg~~~~~ie~v----------------l~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~ 95 (177)
T 3e3v_A 32 LRTRKEVEDKLRSLDIHEDYISEI----------------INKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSK 95 (177)
T ss_dssp CCCHHHHHTTSGGGTCCHHHHHHH----------------HHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHT
T ss_pred cccHHHHHHHHHHcCCCHHHHHHH----------------HHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 345556666677777777766654 555777774 5566655544332222 1334455677888
Q ss_pred CCCChhhHhhHhhhC
Q 013119 151 NGFSDSQIKSITVKR 165 (449)
Q Consensus 151 lGl~~~~i~~il~~~ 165 (449)
-|++.+.|...+...
T Consensus 96 KGI~~~~I~~al~~~ 110 (177)
T 3e3v_A 96 KGIDDNIAEDALILY 110 (177)
T ss_dssp TTCCHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHhC
Confidence 999999988888643
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=80.05 E-value=1.3 Score=32.38 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013119 315 KALWEKKLEAYMNFGLTKDEVYSAFRRQ 342 (449)
Q Consensus 315 ~~~l~~k~~~l~~lG~s~~ev~~~v~~~ 342 (449)
...+..|++||++-|++.+||..++++.
T Consensus 32 ~sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 32 QSPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp GSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3457899999999999999999998874
No 22
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=79.04 E-value=6.5 Score=38.55 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=19.8
Q ss_pred hcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHh-CCCChHHHHHH
Q 013119 223 VLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVN-HGVPKSLVVKL 269 (449)
Q Consensus 223 ~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~i~~l 269 (449)
.|++.++|..+-..... ..-+|. +..-...|++ +|++..+|..|
T Consensus 269 ~~lt~aqVVaIAsn~GG--kQALea-V~~llpvL~~~~~L~~~qVvaI 313 (499)
T 3v6t_A 269 HGLTPQQVVAIASNSGG--KQALET-VQRLLPVLCQAHGLTPQQVVAI 313 (499)
T ss_dssp HCCCHHHHHHHHSSTTH--HHHHHH-HHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCHHHeeeeccCCcc--HHHHHH-HHHhhHHHHHhcCCCHHHHHHH
Confidence 45666655554422211 001232 4444444553 56666666554
No 23
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=78.64 E-value=14 Score=36.32 Aligned_cols=170 Identities=15% Similarity=0.203 Sum_probs=76.5
Q ss_pred cCCChHHHHHHHHhCCcceeccccccchHHHHHHH-HhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHh-CCCChH
Q 013119 187 LGFAELQMAKFLSSQPYILERSLENHIIPCIEILR-RVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVN-HGVPKS 264 (449)
Q Consensus 187 lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~-~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~ 264 (449)
.|++.+++..|-.....--. +| .+..-.--|. ..+++.++|..+-..... ..-+|. +..-.-.|++ .|++..
T Consensus 269 ~~lt~aqVVaIAsn~GGkQA--Le-aV~~llpvL~~~~~L~~~qVvaIAsN~GG--kQALea-V~~l~p~L~~a~gls~~ 342 (499)
T 3v6t_A 269 HGLTPQQVVAIASNSGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALET-VQRLLPVLCQAHGLTPQ 342 (499)
T ss_dssp HCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHTTTCSCHHHHHHHHTSTTH--HHHHHH-HHHHHHHHHHTSCCCHH
T ss_pred ccCCHHHeeeeccCCccHHH--HH-HHHHhhHHHHHhcCCCHHHHHHHhhCCch--HHHHHH-HHHHhHHHHHhcCCCHH
Confidence 57777777665432211000 11 2223333333 247777777766543221 012333 4444555665 788888
Q ss_pred HHHHHHhhcCccceecchHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcC-----HHHHHHHHHHHH-HcCCCHHHHHH
Q 013119 265 LVVKLMLIQPRTLLQSTARLNKIIDEVK-KLGFDPTNLLFVLAIRSMAVMS-----KALWEKKLEAYM-NFGLTKDEVYS 337 (449)
Q Consensus 265 ~i~~li~~~P~lL~~s~~~l~~~v~~l~-~lG~~~~~~~~~~a~~~i~~~s-----~~~l~~k~~~l~-~lG~s~~ev~~ 337 (449)
+|..+-...-.- --.+.+..-+-.++ ..|++.++.. .|.+.. -+.+++..-.+. ..|++.++|..
T Consensus 343 qVVaIAsn~GGk--QALeaV~~llpvL~~a~~Ls~~qVV------aIAsn~GGkqALeaV~~llpvl~~~~~Ls~aqVVa 414 (499)
T 3v6t_A 343 QVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPEQVV------AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414 (499)
T ss_dssp HHHHHHSSTTHH--HHHHHHHHHHHHHHHTTCCCHHHHH------HHHSSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhccCccH--HHHHHHHHhCcchHhhhcCCHHHHH------hHHhccccHHHHHHHHHHHHHhhhhccCCHHHeee
Confidence 877653211000 00022233333344 3466654421 122111 223333344455 47888888776
Q ss_pred HHhcCCcccccChHHHHhHHHHHHHhcCCChHHHh
Q 013119 338 AFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIIS 372 (449)
Q Consensus 338 ~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~ 372 (449)
|-...=- ..-.|.++...--|....|+++.+|+
T Consensus 415 IAsn~GG--kQALeaV~~~lpvLr~~~glt~aqVV 447 (499)
T 3v6t_A 415 IASHDGG--KQALETVQRLLPVLCQAHGLTPQQVV 447 (499)
T ss_dssp HHSSTTH--HHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hhccCcc--HHHHHHHHHhhhHHHHHhCCCHHHHH
Confidence 5432200 00022333444445555677776665
No 24
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=75.98 E-value=2 Score=42.15 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=35.1
Q ss_pred CCChhhHHHHHHHcCCChHHHHHHHHhhhhhhccchhhHHHHHHHCCCCh
Q 013119 106 GDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSD 155 (449)
Q Consensus 106 ~~~l~~~l~~L~~lG~~~~~l~~~i~~~P~lL~~~l~~~l~fL~~lGl~~ 155 (449)
.......++-|.++|++++++.+.+... ..|++..++||.+ |++.
T Consensus 165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~----~nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 165 GSEYETMLTEIMSMGYERERVVAALRAS----YNNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp TTTHHHHHHHHHTTTCCSHHHHHHHHHS----CSSTTHHHHTTTT-SSTT
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHc----CCCHHHHHHHHHh-CCCc
Confidence 4457788899999999999998887754 3489999999964 5554
No 25
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=74.40 E-value=33 Score=30.80 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=76.3
Q ss_pred CcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHHcCC-ChHHHHHHHHhhhhhh-ccchhhHHHHHHH
Q 013119 73 TDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGI-TGANLAEMLNKEHRVL-ESDAYATVEFFRT 150 (449)
Q Consensus 73 ~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~lG~-~~~~l~~~i~~~P~lL-~~~l~~~l~fL~~ 150 (449)
...-..+.+-|...|++++.|..+ ++.|.+.|+ +...++....+.-.-. ........+-|+.
T Consensus 75 ~~S~~EL~~KL~~kg~~~e~i~~v----------------l~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~ 138 (221)
T 3d5l_A 75 MRTESDIVKKLKEIDTPEEFVEPI----------------LKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQ 138 (221)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHH----------------HHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCHHHHHHH----------------HHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 466677777888888887777664 556888884 5666665544432211 1234556788899
Q ss_pred CCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHH
Q 013119 151 NGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENV 230 (449)
Q Consensus 151 lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v 230 (449)
-|++.+.|..++...+ .+.....-... +.+-....+. .+....-...+.||.+-|++.+.+
T Consensus 139 KGI~~~~I~~al~~~~------~~~e~e~a~~l----------~~Kk~~~~~~---~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 139 KGIGESDIDDALTQFT------PEVQAELAKKL----------ALKLFRRYRN---QPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp TTCCHHHHHHHGGGCC------HHHHHHHHHHH----------HHHHHHHTTT---SCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cCCCHHHHHHHHHhCC------HHHHHHHHHHH----------HHHHHhhccC---CChHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999998887642 11111111111 1122222221 121223456678899999998888
Q ss_pred HHHHHh
Q 013119 231 LKAIRA 236 (449)
Q Consensus 231 ~~~l~~ 236 (449)
..++..
T Consensus 200 ~~vl~~ 205 (221)
T 3d5l_A 200 EMIKDE 205 (221)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 877754
No 26
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.66 E-value=5.3 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHH
Q 013119 317 LWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 362 (449)
Q Consensus 317 ~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~ 362 (449)
.-+.+++-|.+|||+++++..+++.+=. ++..-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 3467788888999999999988875431 35556777775
No 27
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.52 E-value=11 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhh
Q 013119 77 DSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 77 ~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
+..++-|.++||++++..+.++.
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 44556666666666666666555
No 28
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=68.31 E-value=7.3 Score=28.51 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=24.2
Q ss_pred HHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHH--HHHHHcCCChHHHHHHHH
Q 013119 144 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKL--EFFKSLGFAELQMAKFLS 199 (449)
Q Consensus 144 ~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl--~fL~~lG~s~~~i~~il~ 199 (449)
.++||.+.|++...-.+.-..+- ...+.+++.|-+ +.|+++|+...+|.+++.
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~---~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFD---REQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH---HTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHH---HccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 34555555555544433222111 112233344433 566666666555555443
No 29
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=66.24 E-value=4.7 Score=27.50 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 013119 315 KALWEKKLEAYMNFGLTKDEVYSAFRR 341 (449)
Q Consensus 315 ~~~l~~k~~~l~~lG~s~~ev~~~v~~ 341 (449)
.+.....++-|.++|||++++.+++..
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345557788888888888888877653
No 30
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=65.69 E-value=9.7 Score=27.21 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=32.2
Q ss_pred HHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013119 255 ILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 255 ~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
.-+.+|++...|.+++...+.-...+++..+...+.++++|+.++.
T Consensus 6 iA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 6 IARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 3456899999999888876622234666666666677888998875
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=64.94 E-value=9.5 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=6.5
Q ss_pred chhhHHHHHHHC
Q 013119 140 DAYATVEFFRTN 151 (449)
Q Consensus 140 ~l~~~l~fL~~l 151 (449)
|++..++||.+.
T Consensus 39 nve~Ave~L~~~ 50 (53)
T 2knz_A 39 DINAAIERLLGS 50 (53)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHHc
Confidence 455555555543
No 32
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=64.57 E-value=6.6 Score=28.74 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCHHHHHHhhcccc---cCCCcCHHHHHHHHHhCCCCHHHHHHHHhh
Q 013119 47 VSDLQKSCGFSLESAVSASEKLR---VDTTDKIDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 47 v~~L~~~~Gls~~~~~~~~~~~~---~~s~~~~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
++|++ +||++...+.+.+.... ....--++---+.|+++|+...+|-+|++.
T Consensus 6 f~FFl-~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 6 FEFFL-NCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp HHHHH-HTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHH-HcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHH
Confidence 45665 69999999887765321 111111222246788888887777776554
No 33
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=59.98 E-value=5.7 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhc
Q 013119 320 KKLEAYMNFGLTKDEVYSAFRR 341 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~ 341 (449)
++++-|.+|||+++++..+++.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 5567777888888888777665
No 34
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=59.21 E-value=53 Score=27.66 Aligned_cols=54 Identities=6% Similarity=0.011 Sum_probs=31.6
Q ss_pred HHHHHHHcCC-ChHHHHHHHHhhhhhhccchhhHHHHHHHCCCChhhHhhHhhhC
Q 013119 112 NLKLFKSLGI-TGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKR 165 (449)
Q Consensus 112 ~l~~L~~lG~-~~~~l~~~i~~~P~lL~~~l~~~l~fL~~lGl~~~~i~~il~~~ 165 (449)
+++.|.+.|+ +...+.....+.-.--........+-|+.-|++.+.|...+...
T Consensus 52 vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i~~al~~~ 106 (159)
T 3c1d_A 52 VIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMREA 106 (159)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4555777774 55555554433221111234455677888888888888777654
No 35
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=58.69 E-value=5 Score=28.42 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=28.5
Q ss_pred chHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhC
Q 013119 45 LTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTH 86 (449)
Q Consensus 45 ~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~ 86 (449)
..|+-|+ ++||+..+|.++.+ ++..+++..++||-++
T Consensus 21 e~V~~Lv-sMGFs~~qA~kALK----at~~NvErAaDWLFSH 57 (63)
T 1wgn_A 21 QCVETVV-NMGYSYECVLRAMK----KKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHH-HHHCCHHHHHHHHH----HHCSCHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHH----HcCCCHHHHHHHHHhC
Confidence 4578886 79999999998876 3357788888888654
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.23 E-value=11 Score=24.86 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHH
Q 013119 320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 362 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~ 362 (449)
.+++-|.+|||+++++..+++.+ + ++..-++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 45666778888888888877765 1 35556666654
No 37
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=57.85 E-value=11 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQ 342 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~ 342 (449)
+++++-|.+|||+.+++..++..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345666677777777777665543
No 38
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=57.40 E-value=12 Score=24.79 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Q 013119 317 LWEKKLEAYMNFGLTKDEVYSAFR 340 (449)
Q Consensus 317 ~l~~k~~~l~~lG~s~~ev~~~v~ 340 (449)
.++..++.|.++|++.+++.+++.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 456778888899999999887765
No 39
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=56.81 E-value=13 Score=25.47 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHh
Q 013119 315 KALWEKKLEAYMNFGL-TKDEVYSAFR 340 (449)
Q Consensus 315 ~~~l~~k~~~l~~lG~-s~~ev~~~v~ 340 (449)
++..+.+++-|.+||| +++.+..+++
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~ 34 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALI 34 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3444555555555666 5555444443
No 40
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.69 E-value=18 Score=25.55 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhc
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 364 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~m 364 (449)
+.+++-|.+|||+++++.++++.+-. ++..-++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 45667788899999999988887621 3667788888754
No 41
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.75 E-value=18 Score=27.27 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcC
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 365 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg 365 (449)
+.+++-|..|||+++++..+++.+= .++..-++||.+..|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 4567777888999888888877443 247778889888766
No 42
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=51.96 E-value=17 Score=24.99 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHh
Q 013119 316 ALWEKKLEAYMNFGLTKDEVYSAFR 340 (449)
Q Consensus 316 ~~l~~k~~~l~~lG~s~~ev~~~v~ 340 (449)
+..+..++-|.++||+.+++.+++.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHH
Confidence 3456678888899999999987765
No 43
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.60 E-value=16 Score=25.89 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhc
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 364 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~m 364 (449)
+..++-+..|||+.++..++++... .++.+-.|||...+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCC
Confidence 4457888899999999999888654 35777788887654
No 44
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.04 E-value=15 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRR 341 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~ 341 (449)
+.+++-|.++||+++++.+++..
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 35577788888888888876653
No 45
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.64 E-value=13 Score=26.48 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
+++++-|.+|||+++++..+++.+= .++..-++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 3456778889999999888877652 1466778888864
No 46
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=50.38 E-value=11 Score=26.83 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=24.6
Q ss_pred HHHHHhcCCCHHHHHHhhcccc---cCCCcCHHHHHHHHHhCCCCHHHHHH
Q 013119 48 SDLQKSCGFSLESAVSASEKLR---VDTTDKIDSVLKLLRTHGLTRSQINN 95 (449)
Q Consensus 48 ~~L~~~~Gls~~~~~~~~~~~~---~~s~~~~~~v~~~L~~~G~~~~~i~~ 95 (449)
.-+-+.+|+|...+.++...-. .-+++..+.+.+..+++|..+...++
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~ 54 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAA 54 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC----
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 3444566777777766654322 23444455556666666666554443
No 47
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.19 E-value=10 Score=27.96 Aligned_cols=37 Identities=11% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHH
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN 362 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~ 362 (449)
+++++-|.+|||+++++..+++.+= .++..-++||.+
T Consensus 30 ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 5566777788888888888777531 246666778775
No 48
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=47.83 E-value=23 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=31.1
Q ss_pred HHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013119 254 AILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 254 ~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
+.-+..|++...|.+++...|. .+++.-+...+.++++|+.++.
T Consensus 14 diA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 14 DVALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 4455689999999988876664 3556666666677899998874
No 49
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.70 E-value=17 Score=24.89 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=22.9
Q ss_pred HHHHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCC
Q 013119 252 NIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDP 298 (449)
Q Consensus 252 ~v~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~ 298 (449)
.++-|.++|++++.+.+.+.. .....++..++|+.++++..
T Consensus 12 mlq~L~eMGFd~erae~Alk~------Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQ------TGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHH------HTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHcCCCHHHHHHHHHH------hCcccHHHHHHHHHHhcCCC
Confidence 355666677777665544432 11234666666666666553
No 50
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=46.84 E-value=17 Score=26.01 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=32.6
Q ss_pred chHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHH
Q 013119 45 LTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNF 96 (449)
Q Consensus 45 ~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~i 96 (449)
.|..-+-+.+|+|...+.++...-..-+++..+.+.+..+++|+.+...++-
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~a~~ 61 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRN 61 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4677777888999888888765433334555666777788888876655543
No 51
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=45.17 E-value=19 Score=26.46 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
..+++-|.+|||+++++.++++.+= .++..-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 3456777889999999988887543 1466678888764
No 52
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.52 E-value=46 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=15.2
Q ss_pred ChHHHHhHHHHHHHhcCCChHHHhh
Q 013119 349 SEQKISKLMDCYVNKLSMEPLIISK 373 (449)
Q Consensus 349 S~e~l~~k~~fL~~~mg~~~~~i~~ 373 (449)
+.+.+..-.+.|-..+|++++++..
T Consensus 51 ~~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 51 DALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp BHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHccccCCCHHHHHc
Confidence 4444555555566666888877653
No 53
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.59 E-value=44 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhh
Q 013119 77 DSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 77 ~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
+..++-|.++||++++..+.+..
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~ 32 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMD 32 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455566666666666555554
No 54
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.10 E-value=24 Score=24.17 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.5
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 013119 80 LKLLRTHGLTRSQINNFV 97 (449)
Q Consensus 80 ~~~L~~~G~~~~~i~~il 97 (449)
++-|.+.||+++-....+
T Consensus 13 lq~L~eMGFd~erae~Al 30 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRAL 30 (54)
T ss_dssp HHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 334444444444433333
No 55
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.98 E-value=30 Score=24.58 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013119 321 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 321 k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
.++-|.+|||+.+++.++++.+-. .++..-++||.+.
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhC
Confidence 455666788888888777765332 2456667777654
No 56
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=40.90 E-value=1.6e+02 Score=24.68 Aligned_cols=134 Identities=15% Similarity=0.098 Sum_probs=75.2
Q ss_pred HHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcC-ChHHHHHHHHhCCcccccchhhhhHHHHHHHHhC
Q 013119 181 LEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLD-TDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNH 259 (449)
Q Consensus 181 l~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~-~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~l 259 (449)
+.+|..-.-|..++.+-|.+. +++ ++.+...+++|.+.|. ++...+....+.-.--+.+.. ....-|+.-
T Consensus 24 l~~Ls~r~~s~~EL~~KL~~k----g~~-~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~----~I~~eL~~K 94 (162)
T 3dfg_A 24 LGLLVHREHSKKELNRKLQAR----GIE-PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPL----HIRAELGTH 94 (162)
T ss_dssp HHHHHHSCCCHHHHHHHHHHT----TCC-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHH----HHHHHHHHT
T ss_pred HHHhhchhhhHHHHHHHHHhc----CCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHH----HHHHHHHHc
Confidence 345555566777777666654 233 3367888899999884 555555555432110022222 223457889
Q ss_pred CCChHHHHHHHhhcCccceecchHHHHHHHHH-HhcCC-CCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHH
Q 013119 260 GVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV-KKLGF-DPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYS 337 (449)
Q Consensus 260 Gv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l-~~lG~-~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~ 337 (449)
|++.+.|...+.... .+..+.....+ +++|- .+. ....-++-+.||..-||+.+.|..
T Consensus 95 GI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~~~--------------~~~~k~K~~~~L~rrGF~~~~I~~ 154 (162)
T 3dfg_A 95 GLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDGPV--------------DLAQRRKAADLLARRGFDGNSIRL 154 (162)
T ss_dssp TCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTCCC--------------SHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCCCC--------------CHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999988876543 12222222222 23332 111 122223345788899999999998
Q ss_pred HHhcCC
Q 013119 338 AFRRQP 343 (449)
Q Consensus 338 ~v~~~P 343 (449)
++...|
T Consensus 155 ~l~~~~ 160 (162)
T 3dfg_A 155 ATRFDL 160 (162)
T ss_dssp HTTC--
T ss_pred HHhcCc
Confidence 876554
No 57
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=40.23 E-value=15 Score=24.94 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhcCC
Q 013119 283 RLNKIIDEVKKLGF 296 (449)
Q Consensus 283 ~l~~~v~~l~~lG~ 296 (449)
..++.++.|.+|||
T Consensus 11 ~~~~~l~~L~~MGF 24 (52)
T 2jy5_A 11 RFQQQLEQLSAMGF 24 (52)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 34555555555555
No 58
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=40.21 E-value=81 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=29.2
Q ss_pred CCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhC
Q 013119 43 QPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTH 86 (449)
Q Consensus 43 ~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~ 86 (449)
++..|.-|+ ++||+...+.++.+... ..+++.-++||..+
T Consensus 3 d~~~l~~L~-~MGF~~~~a~~AL~~t~---n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 3 DESSVMQLA-EMGFPLEACRKAVYFTG---NMGAEVAFNWIIVH 42 (126)
T ss_dssp CTHHHHHHH-TTSSCCHHHHHHHHHHT---SCCHHHHHHHHHHG
T ss_pred CHHHHHHHH-HcCCCHHHHHHHHHHcC---CCCHHHHHHHHHHh
Confidence 455677786 69999999998876331 23688889999655
No 59
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=39.98 E-value=74 Score=21.37 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=5.7
Q ss_pred HHHHHHHHhCCC
Q 013119 77 DSVLKLLRTHGL 88 (449)
Q Consensus 77 ~~v~~~L~~~G~ 88 (449)
++.++-|.++||
T Consensus 13 ~~~l~~L~~MGF 24 (52)
T 2jy5_A 13 QQQLEQLSAMGF 24 (52)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344444445555
No 60
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=39.56 E-value=1.8e+02 Score=24.82 Aligned_cols=127 Identities=12% Similarity=0.065 Sum_probs=68.7
Q ss_pred cCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhc-CChHHHHHHHHhCCccc-ccchhhhhHHHHHHHHhCCCChH
Q 013119 187 LGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVL-DTDENVLKAIRAGCLVL-EYDIEKVLEPNIAILVNHGVPKS 264 (449)
Q Consensus 187 lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g-~~~~~v~~~l~~~P~iL-~~s~e~~l~~~v~~L~~lGv~~~ 264 (449)
-.-|..++.+-+.+. +++ +..+...+++|.+.| +++...+....+.-.-. ..+..+ | ..-|+.-|++.+
T Consensus 31 r~~S~~EL~~KL~~k----g~~-~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~-I---~~eL~~KGI~~~ 101 (177)
T 3e3v_A 31 QLRTRKEVEDKLRSL----DIH-EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKV-I---KLNLSKKGIDDN 101 (177)
T ss_dssp SCCCHHHHHTTSGGG----TCC-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHH-H---HHHHHTTTCCHH
T ss_pred ccccHHHHHHHHHHc----CCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHH-H---HHHHHHcCCCHH
Confidence 445666665544432 233 235778888888887 46666666655431111 123222 2 244778899999
Q ss_pred HHHHHHhhcCccceecchH-HHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCHHHHHHH-HHHHHHcCCCHHHHHHHHhc
Q 013119 265 LVVKLMLIQPRTLLQSTAR-LNKIIDEVK-KLGFDPTNLLFVLAIRSMAVMSKALWEKK-LEAYMNFGLTKDEVYSAFRR 341 (449)
Q Consensus 265 ~i~~li~~~P~lL~~s~~~-l~~~v~~l~-~lG~~~~~~~~~~a~~~i~~~s~~~l~~k-~~~l~~lG~s~~ev~~~v~~ 341 (449)
.|...+...+ .+. .+.....+. .+| .....+....+.| +.||..-||+.+.|..++..
T Consensus 102 ~I~~al~~~~------~~de~e~a~~l~~Kk~~-------------~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 102 IAEDALILYT------DKLQVEKGVTLAEKLAN-------------RYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHTTSC------HHHHHHHHHHHHHHHHH-------------HTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCC------chhHHHHHHHHHHHHHh-------------hccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 8887775332 222 222222221 111 1111233444555 45888999999999877653
No 61
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=38.84 E-value=49 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHhCCCCHHHHHHHHhh
Q 013119 74 DKIDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 74 ~~~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
...+..++-|.++||+++++...+..
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33466677777777777777766665
No 62
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.27 E-value=53 Score=22.82 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHcCC
Q 013119 317 LWEKKLEAYMNFGL 330 (449)
Q Consensus 317 ~l~~k~~~l~~lG~ 330 (449)
.++.+++-|++|||
T Consensus 16 ~~~~qi~~L~~MGF 29 (58)
T 1wr1_B 16 RYEHQLRQLNDMGF 29 (58)
T ss_dssp HTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 34444444445554
No 63
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=37.61 E-value=71 Score=21.71 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=8.0
Q ss_pred hHHHHHHhcCCCHHHHHHh
Q 013119 46 TVSDLQKSCGFSLESAVSA 64 (449)
Q Consensus 46 ~v~~L~~~~Gls~~~~~~~ 64 (449)
.|.-|+ ++|+|.+++.++
T Consensus 14 ~Ia~Lm-~mGFsr~~ai~A 31 (52)
T 2ooa_A 14 KIAKLM-GEGYAFEEVKRA 31 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHH
Confidence 334443 344444444444
No 64
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.73 E-value=37 Score=23.35 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHhcCCCCC
Q 013119 281 TARLNKIIDEVKKLGFDPT 299 (449)
Q Consensus 281 ~~~l~~~v~~l~~lG~~~~ 299 (449)
++.....++.|.+|||...
T Consensus 6 ee~~a~~L~~L~eMGF~D~ 24 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDR 24 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCH
T ss_pred HHhhHHHHHHHHHcCCCcH
Confidence 3456667777777777543
No 65
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=36.23 E-value=38 Score=22.26 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHcCCC
Q 013119 316 ALWEKKLEAYMNFGLT 331 (449)
Q Consensus 316 ~~l~~k~~~l~~lG~s 331 (449)
+.++.+++-|.+|||+
T Consensus 5 ~~~~~~i~~L~~MGF~ 20 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFF 20 (46)
T ss_dssp HHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3445555666666654
No 66
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=35.76 E-value=1.1e+02 Score=23.33 Aligned_cols=54 Identities=7% Similarity=-0.035 Sum_probs=33.6
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhcccccCCC------cCHHHHHHHHHhCCCCHHHHHH
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKLRVDTT------DKIDSVLKLLRTHGLTRSQINN 95 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~------~~~~~v~~~L~~~G~~~~~i~~ 95 (449)
.++.++..|.+.+|+|+....+..+..--.++ ..++.....|.+-+.+-.+|+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~ 78 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQTKDNLTIIAG 78 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34688999999999999999988765422221 2233444455554555444443
No 67
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.08 E-value=41 Score=23.79 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhC
Q 013119 41 CTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTH 86 (449)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~ 86 (449)
..+...|.-|+ ++||+..++.++.+.. ...+++.-++||-++
T Consensus 7 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t---~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 7 GAELTALESLI-EMGFPRGRAEKALALT---GNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCCHHHHHH-TTTCCHHHHHHHHHHH---TSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHh---cCCCHHHHHHHHHhC
Confidence 45667888886 7999999999886522 125688888888654
No 68
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.46 E-value=35 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHHc-CCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013119 313 MSKALWEKKLEAYMNF-GLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 313 ~s~~~l~~k~~~l~~l-G~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
.+...++++|+.+.++ |+++++++.++..+=. .+..-+++|.+.
T Consensus 34 ~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lleg 78 (104)
T 1wj7_A 34 HNDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLEG 78 (104)
T ss_dssp SCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHTC
T ss_pred CCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHhC
Confidence 3445677888888877 8888888876654321 355556666653
No 69
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=33.92 E-value=1.5e+02 Score=22.71 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=33.8
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhcccccCCC------cCHHHHHHHHHhCCCCHHHHHH
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKLRVDTT------DKIDSVLKLLRTHGLTRSQINN 95 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~------~~~~~v~~~L~~~G~~~~~i~~ 95 (449)
..+.++..|.+.+|+|+....++.++.--.++ ..++...+.|..-+.+-.+|+.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~ 80 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGL 80 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 45589999999999999999988765422221 2233444555554555455543
No 70
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=33.37 E-value=2.5e+02 Score=24.77 Aligned_cols=132 Identities=12% Similarity=0.006 Sum_probs=70.2
Q ss_pred HHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhc-CChHHHHHHHHhCCcc-cccchhhhhHHHHHHHHhCC
Q 013119 183 FFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVL-DTDENVLKAIRAGCLV-LEYDIEKVLEPNIAILVNHG 260 (449)
Q Consensus 183 fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g-~~~~~v~~~l~~~P~i-L~~s~e~~l~~~v~~L~~lG 260 (449)
+|..-.-|..++.+-+.+.. ++ +..+...+++|.+.| +++...+....+.-.- =..+.. ....-|+.-|
T Consensus 70 ~Ls~r~~S~~EL~~KL~~kg----~~-~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~----~I~~eL~~KG 140 (221)
T 3d5l_A 70 YLSYQMRTESDIVKKLKEID----TP-EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPG----IIRQHLRQKG 140 (221)
T ss_dssp HHTTSCCCHHHHHHHHHHTT----CC-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHTT
T ss_pred HhccccccHHHHHHHHHhcC----CC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHH----HHHHHHHHcC
Confidence 33334556666666555432 23 235778888888887 4666666555543111 012222 2234577889
Q ss_pred CChHHHHHHHhhcCccceecchHHHHH-HHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHH-HHHHHHcCCCHHHHHHH
Q 013119 261 VPKSLVVKLMLIQPRTLLQSTARLNKI-IDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKK-LEAYMNFGLTKDEVYSA 338 (449)
Q Consensus 261 v~~~~i~~li~~~P~lL~~s~~~l~~~-v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k-~~~l~~lG~s~~ev~~~ 338 (449)
++.+.|...+...+ .+...+. ...+++ .+......+....+.| +.||..-||+.+.|..+
T Consensus 141 I~~~~I~~al~~~~------~~~e~e~a~~l~~K------------k~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~v 202 (221)
T 3d5l_A 141 IGESDIDDALTQFT------PEVQAELAKKLALK------------LFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMI 202 (221)
T ss_dssp CCHHHHHHHGGGCC------HHHHHHHHHHHHHH------------HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhCC------HHHHHHHHHHHHHH------------HHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99998887766432 2222111 111211 0111111223343444 57777999999999877
Q ss_pred Hhc
Q 013119 339 FRR 341 (449)
Q Consensus 339 v~~ 341 (449)
+..
T Consensus 203 l~~ 205 (221)
T 3d5l_A 203 KDE 205 (221)
T ss_dssp TTC
T ss_pred HHh
Confidence 654
No 71
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.97 E-value=41 Score=23.38 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013119 282 ARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQP 343 (449)
Q Consensus 282 ~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P 343 (449)
++.++.++.|.+|||...+ ..+..|+..+++.+.....+..+|
T Consensus 15 ~~~~~qi~~L~~MGF~d~~-------------------~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFD-------------------RNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHH-------------------HHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcHH-------------------HHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5789999999999996442 123345556666665555554444
No 72
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=31.34 E-value=17 Score=24.19 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=12.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhc
Q 013119 321 KLEAYMNFGLTKDEVYSAFRR 341 (449)
Q Consensus 321 k~~~l~~lG~s~~ev~~~v~~ 341 (449)
+|+-|..|||++.++.+++..
T Consensus 7 aI~rL~~mGF~~~~a~~Al~a 27 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQAYFA 27 (47)
T ss_dssp HHTTTTTTTCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 344455667776666655443
No 73
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.33 E-value=2.3e+02 Score=23.58 Aligned_cols=134 Identities=12% Similarity=0.045 Sum_probs=70.4
Q ss_pred HHHHHcCCChHHHHHHHHhC------CcceeccccccchHHHHHHHHhc-CChHHHHHHHHhCCcccccchhhhhHHHHH
Q 013119 182 EFFKSLGFAELQMAKFLSSQ------PYILERSLENHIIPCIEILRRVL-DTDENVLKAIRAGCLVLEYDIEKVLEPNIA 254 (449)
Q Consensus 182 ~fL~~lG~s~~~i~~il~~~------P~iL~~s~~~~l~p~v~fL~~~g-~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~ 254 (449)
.+|..-.-|..++.+-+.+. |....++ ++.+...+++|.+.| +++...+....+.-.-=+.+.. ....
T Consensus 13 ~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~-~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~----~I~~ 87 (159)
T 3c1d_A 13 RILAVRDHSEQELRRKLAAPIMGKNGPEEIDAT-AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPA----RIRQ 87 (159)
T ss_dssp HHHTTSCCCHHHHHHHHHCC-----------CC-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHH----HHHH
T ss_pred HHhhcccccHHHHHHHHHHHhhcccCccccCCC-HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHH----HHHH
Confidence 34444455777777666652 2222233 336888889999987 4666666555543111112221 2234
Q ss_pred HHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHH-HhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHH
Q 013119 255 ILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV-KKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKD 333 (449)
Q Consensus 255 ~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l-~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ 333 (449)
-|+.-||+.+.|...+..... +..+...+.+ +++|-.... ....-++-+.||..-||+.+
T Consensus 88 eL~~KGI~~~~i~~al~~~~~------d~~~~a~~l~~kk~~~~~~~-------------~~~~~~K~~~~L~rrGF~~~ 148 (159)
T 3c1d_A 88 ELNQKGISREATEKAMREADI------DWAALARDQATRKYGEPLPT-------------VFSEKVKIQRFLLYRGYLME 148 (159)
T ss_dssp HHHHTTCCHHHHHHHHHHHCC------CHHHHHHHHHHHHHCSSCCC-------------SHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHcCCCHHHHHHHHHHcCH------hHHHHHHHHHHHHcCCCCCC-------------CHHHHHHHHHHHHHCCCCHH
Confidence 577899999988877765432 1222222222 233331110 11222334567889999999
Q ss_pred HHHHHH
Q 013119 334 EVYSAF 339 (449)
Q Consensus 334 ev~~~v 339 (449)
.|..++
T Consensus 149 ~i~~~l 154 (159)
T 3c1d_A 149 DIQDIW 154 (159)
T ss_dssp HHTTCC
T ss_pred HHHHHH
Confidence 887544
No 74
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=31.25 E-value=53 Score=27.59 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=17.9
Q ss_pred CcccccchhhhhHHHHHHHHhCCCChHHHHHHHhh
Q 013119 238 CLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLI 272 (449)
Q Consensus 238 P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~ 272 (449)
|.++..+.+. ++..+--|.+-|+++++|.-+++.
T Consensus 25 P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLRD 58 (153)
T 2xzm_O 25 PKWLHMTPST-VVDLSVKLAKKGLTPSQIGVILRD 58 (153)
T ss_dssp CSSCCCCHHH-HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CccccCCHHH-HHHHHHHHHHCCCCHHHhhhHHhh
Confidence 4555555554 555555555555555555555543
No 75
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=30.71 E-value=1.5e+02 Score=22.42 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=32.8
Q ss_pred CCchHHHHHHhcCCCHHHHHHhhcccccCCC------cCHHHHHHHHHhCCCCHHHHHH
Q 013119 43 QPLTVSDLQKSCGFSLESAVSASEKLRVDTT------DKIDSVLKLLRTHGLTRSQINN 95 (449)
Q Consensus 43 ~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~------~~~~~v~~~L~~~G~~~~~i~~ 95 (449)
.+.+++.|.+.+|+|+....++.+..--.++ ..++.....|..-+.+-.+|+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~ 77 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGR 77 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5678999999999999999988765322221 2233334455544555444443
No 76
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.58 E-value=44 Score=23.49 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=27.4
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHh
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRT 85 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~ 85 (449)
.+...|.-|+ ++||+.+++.++.+.. ..+++..++||.+
T Consensus 8 ~~~~~v~~L~-~MGF~~~~a~~AL~~t----~~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIV-SMGFSRDQALKALRAT----NNSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHH-HHTCCHHHHHHHHHHT----TSCSHHHHHHHHH
T ss_pred CCHHHHHHHH-HcCCCHHHHHHHHHHc----CCCHHHHHHHHHh
Confidence 4556777886 6999998888886532 2457777777754
No 77
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.34 E-value=54 Score=23.88 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCC
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHG 87 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G 87 (449)
.++..|.-|+ ++||+.+++.++.+. +..+++.-++||.+..
T Consensus 28 ~~~~~v~~L~-~MGF~~~~a~~AL~~----t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 28 IDQSSVDTLL-SFGFAEDVARKALKA----SGGDIEKATDWVFNNS 68 (73)
T ss_dssp SCHHHHHHHH-HHTCCHHHHHHHHHH----TTSCHHHHHHHHHHSC
T ss_pred CCHHHHHHHH-HcCCCHHHHHHHHHH----hCCCHHHHHHHHHhCC
Confidence 4556788886 799999999888653 2357888888886543
No 78
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.27 E-value=54 Score=23.22 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCC
Q 013119 40 TCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHG 87 (449)
Q Consensus 40 ~~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G 87 (449)
...+...|.-|+ ++||+.+.+.++..... ..+++.-++||-++.
T Consensus 6 ~~~~e~~v~~L~-~MGF~~~~a~~AL~~t~---n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 6 SGSSPSLLEPLL-AMGFPVHTALKALAATG---RKTAEEALAWLHDHC 49 (64)
T ss_dssp CCCSCSSHHHHH-HTSCCHHHHHHHHHHHT---SCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHH-HcCCCHHHHHHHHHHhC---CCCHHHHHHHHHhCC
Confidence 345666888997 69999999998865321 136888888887654
No 79
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.23 E-value=1.7e+02 Score=22.70 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=21.6
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhccc
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKL 68 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~ 68 (449)
..++++..|.+.+|+|.....+..+..
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 446889999999999999888877643
No 80
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.95 E-value=45 Score=24.38 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcC
Q 013119 320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 365 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg 365 (449)
.+++-|.+|||+++++.++++.+-. ..+..-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 4566778899999999988874421 137778999998654
No 81
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=28.83 E-value=2.4e+02 Score=27.94 Aligned_cols=17 Identities=53% Similarity=0.729 Sum_probs=9.7
Q ss_pred HHHHHHCCCChhhHhhH
Q 013119 145 VEFFRTNGFSDSQIKSI 161 (449)
Q Consensus 145 l~fL~~lGl~~~~i~~i 161 (449)
+.-|+++|+++.+|+++
T Consensus 549 v~elrelg~sd~~ia~i 565 (685)
T 4gfj_A 549 VEELRELGFSDDEIAEI 565 (685)
T ss_dssp HHHHHTTSCCHHHHHHH
T ss_pred HHHHHHcCCchhhHHHh
Confidence 45556666666665553
No 82
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.56 E-value=48 Score=24.88 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcC
Q 013119 320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 365 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg 365 (449)
.+++-|.+|||+.+++.++++.+- ..+..-++||.+.++
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCCC
Confidence 346667789999999998887641 246677899988653
No 83
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=27.69 E-value=1.9e+02 Score=21.87 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhccc
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKL 68 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~ 68 (449)
.++++++.|.+.+|+|+....++.++.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456899999999999999999887654
No 84
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.42 E-value=97 Score=22.68 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCC
Q 013119 283 RLNKIIDEVKKLGFD 297 (449)
Q Consensus 283 ~l~~~v~~l~~lG~~ 297 (449)
..++.++.|.+|||.
T Consensus 28 ~ye~qi~qL~eMGF~ 42 (74)
T 1vej_A 28 RYQQELEELKALGFA 42 (74)
T ss_dssp TSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 445555555555553
No 85
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=25.97 E-value=63 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhh
Q 013119 76 IDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 76 ~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
.+.+++.|..+|+++.++.+++..
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456788888888888888887765
No 86
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=25.85 E-value=54 Score=27.50 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=21.8
Q ss_pred CCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhc
Q 013119 237 GCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQ 273 (449)
Q Consensus 237 ~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~ 273 (449)
.|..+..+.+. ++..+--|.+-|+++++|.-+++..
T Consensus 22 ~P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 22 APAWFKLSSES-VIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CCSSCCSCHHH-HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCcCCCHHH-HHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 35566666665 6666666666666666666655543
No 87
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.95 E-value=94 Score=23.35 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHhh
Q 013119 78 SVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 78 ~v~~~L~~~G~~~~~i~~il~~ 99 (449)
..++-|.++||++....+.+..
T Consensus 23 ~~I~qL~~MGF~~~~a~~AL~~ 44 (85)
T 2dkl_A 23 RLIKQLTDMGFPREPAEEALKS 44 (85)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3455555666666666555533
No 88
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.92 E-value=1.1e+02 Score=20.76 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=20.3
Q ss_pred chhhHHHHHHHcCCChHH-HHHHHHhCCcceeccccccchHHHHHHHHh
Q 013119 176 CMKPKLEFFKSLGFAELQ-MAKFLSSQPYILERSLENHIIPCIEILRRV 223 (449)
Q Consensus 176 ~l~pkl~fL~~lG~s~~~-i~~il~~~P~iL~~s~~~~l~p~v~fL~~~ 223 (449)
....+++-|.++|++..+ ..+.|..+ ..++...+++|-+.
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 345566666777775544 23433321 22455555555543
No 89
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.75 E-value=62 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013119 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
+++++-|..|||+++++.++++.+= -.+..-++||.+.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n-------~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN-------MNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHC
Confidence 6678888899999999888774322 2477788888875
No 90
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=24.38 E-value=1.7e+02 Score=23.01 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCCchHHHHHHhcCCCHHHHHHhhcccccCCC------cCHHHHHHHHHhCCCCHHHHHH
Q 013119 42 TQPLTVSDLQKSCGFSLESAVSASEKLRVDTT------DKIDSVLKLLRTHGLTRSQINN 95 (449)
Q Consensus 42 ~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~------~~~~~v~~~L~~~G~~~~~i~~ 95 (449)
.++++++.|.+.+|+|.....++.++.--.++ ..++...+.|..-+.+-.+|+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL~~~~~si~~IA~ 84 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAE 84 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44588999999999999999988765322221 2233334455444554444443
No 91
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.82 E-value=1.7e+02 Score=21.29 Aligned_cols=46 Identities=22% Similarity=0.138 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHhc-----CCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCC
Q 013119 281 TARLNKIIDEVKKL-----GFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGL 330 (449)
Q Consensus 281 ~~~l~~~v~~l~~l-----G~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~ 330 (449)
.++.++.++++++. |..+..... ...+++|..+++.-++.|.+-|+
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EI----a~~lgvS~~TVrr~L~~Le~kG~ 53 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDI----ADAAGLSIYQVRLYLEQLHDVGV 53 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHH----HHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHH----HHHHCCCHHHHHHHHHHHHHCCc
Confidence 34566666776655 666553332 22234566666666666665554
No 92
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.59 E-value=67 Score=24.10 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcC
Q 013119 320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLS 365 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg 365 (449)
.+++-|.+|||+++.+.++++..- -..+..-++||.+.+.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~------n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHhCCC
Confidence 456677789999999888776431 1246778899988653
No 93
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.63 E-value=1.2e+02 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=20.7
Q ss_pred CchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHh
Q 013119 44 PLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRT 85 (449)
Q Consensus 44 ~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~ 85 (449)
...|.-|+ ++||+.++|.++.+. +..+++.-++||.+
T Consensus 30 ee~I~~Lv-~MGF~~~~A~~AL~~----t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLV-YMGFDTVVAEAALRV----FGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHH-HHSCCHHHHHHHHHH----TTTCHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHH----cCCCHHHHHHHHHh
Confidence 34566665 567777766666542 22445555665543
No 94
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.57 E-value=79 Score=23.66 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhC
Q 013119 41 CTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTH 86 (449)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~ 86 (449)
..+...|.-|+ ++||+..++.++.+. +..+++.-++||-++
T Consensus 27 ~~~e~~i~~L~-~MGF~~~~a~~AL~~----t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 27 RVDEAALRQLT-EMGFPENRATKALQL----NHMSVPQAMEWLIEH 67 (83)
T ss_dssp SCCHHHHHHHH-HHTCCHHHHHHHHHH----TTSCHHHHHHHHHHG
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHH----hCCCHHHHHHHHHHC
Confidence 34566778886 699999999888653 245788888888654
No 95
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.93 E-value=1e+02 Score=21.47 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=10.4
Q ss_pred HHHhcCCChHHHhhCC
Q 013119 360 YVNKLSMEPLIISKHP 375 (449)
Q Consensus 360 L~~~mg~~~~~i~~~P 375 (449)
+.+.+|++++++...+
T Consensus 56 ia~~l~~~~~~l~~~~ 71 (78)
T 3b7h_A 56 VCGTLGISVHDFFDFP 71 (78)
T ss_dssp HHHHHTCCHHHHTCST
T ss_pred HHHHcCCCHHHHhcCC
Confidence 4455688888776543
No 96
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.41 E-value=66 Score=23.11 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHcCCCHH
Q 013119 315 KALWEKKLEAYMNFGLTKD 333 (449)
Q Consensus 315 ~~~l~~k~~~l~~lG~s~~ 333 (449)
++.++.+++-|++|||+..
T Consensus 16 e~~y~~ql~qL~~MGF~d~ 34 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNY 34 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHcCCCcH
Confidence 3444555555555555433
No 97
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=21.31 E-value=1.3e+02 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=31.5
Q ss_pred HHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCc
Q 013119 231 LKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPR 275 (449)
Q Consensus 231 ~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~ 275 (449)
.+.+.+.|.....+.+. ++.-+..|+..|+++.++..++-.+|.
T Consensus 60 l~YL~~~p~~~~q~~e~-i~~l~~~L~~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 60 LKYLSSQGNCEGLTKER-FLDCIAIFNEFELTKAEILVILNNKPS 103 (136)
T ss_dssp HHHHHTTTCCTTCCHHH-HHHHHHTTTTTCCCHHHHHHHHHHCCC
T ss_pred HHHHHhCCCccccCHHH-HHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 34444445443345565 777777788889999999999999997
No 98
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=20.92 E-value=1.3e+02 Score=29.92 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=40.6
Q ss_pred ChhhHHHHHHH-cCCChHHHHHHHHhhhhhhccchhhHHHHHHHCCCChhhHhhHhh
Q 013119 108 TLEPNLKLFKS-LGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITV 163 (449)
Q Consensus 108 ~l~~~l~~L~~-lG~~~~~l~~~i~~~P~lL~~~l~~~l~fL~~lGl~~~~i~~il~ 163 (449)
++.+....|.+ -|+.+....+++.+|+.+-... .+..+-|++-|++.++++++..
T Consensus 462 tL~eqeamLtAIaGIGp~tAeRLLEkFGSVe~Vm-~AteDELRedGIGekqarrI~g 517 (685)
T 4gfj_A 462 SLVPGYASLISIRGIDRERAERLLKKYGGYSKVR-EAGVEELREDGLTDAQIRELKG 517 (685)
T ss_dssp HHSTTHHHHHTSTTCCHHHHHHHHHHHTSHHHHH-HSCHHHHHHTTCCHHHHHHHHT
T ss_pred ccccceeeeeccCCCCHHHHHHHHHHhcCHHHHH-hCCHHHHHHccccHHHHHHHhh
Confidence 35555567777 5999999999999998875421 1445556779999999998864
No 99
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=20.48 E-value=2.7e+02 Score=20.78 Aligned_cols=58 Identities=3% Similarity=0.049 Sum_probs=31.6
Q ss_pred hHHHHHHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 013119 249 LEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIR 308 (449)
Q Consensus 249 l~~~v~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~ 308 (449)
++..-.|.+.+|++..+|-.+-..+|+=+. +...+---.|....|-...-..++.++.
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~~--Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr 69 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDTA--EQKVQLLLCWYQSHGKSDAYQDLIKGLK 69 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCCT--THHHHHHHHHHHHSCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCChH--HHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 334445677788888888888777776322 2223333334455554433333444443
Done!