Query 013120
Match_columns 449
No_of_seqs 330 out of 3082
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 2E-73 4.4E-78 594.7 31.2 434 1-444 4-446 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 3.3E-47 7.1E-52 353.8 26.2 239 1-250 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 2.4E-37 5.1E-42 300.6 20.9 221 223-443 2-231 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 2.9E-33 6.4E-38 273.7 30.9 400 31-438 305-725 (980)
5 PF00350 Dynamin_N: Dynamin fa 99.9 1.1E-23 2.4E-28 187.8 15.4 167 37-213 1-168 (168)
6 COG1159 Era GTPase [General fu 99.9 1.3E-21 2.8E-26 182.6 11.0 205 34-304 6-213 (298)
7 TIGR00436 era GTP-binding prot 99.8 9E-19 1.9E-23 168.3 11.3 203 36-305 2-206 (270)
8 COG0486 ThdF Predicted GTPase 99.8 4E-17 8.7E-22 161.2 20.2 179 4-256 194-372 (454)
9 PF02421 FeoB_N: Ferrous iron 99.8 3.4E-19 7.3E-24 154.9 3.9 146 36-250 2-151 (156)
10 PRK00089 era GTPase Era; Revie 99.7 1.6E-17 3.6E-22 161.5 13.5 205 35-304 6-212 (292)
11 PRK15494 era GTPase Era; Provi 99.7 9.4E-17 2E-21 158.8 13.6 204 36-305 54-258 (339)
12 COG1160 Predicted GTPases [Gen 99.7 2.5E-16 5.4E-21 155.2 13.6 159 35-258 4-163 (444)
13 PRK09866 hypothetical protein; 99.7 1.9E-14 4.1E-19 147.5 25.5 211 35-255 70-348 (741)
14 COG1084 Predicted GTPase [Gene 99.7 1.1E-15 2.3E-20 144.3 13.1 158 2-219 135-296 (346)
15 PRK05291 trmE tRNA modificatio 99.6 1.8E-14 3.8E-19 147.7 21.1 156 33-259 214-369 (449)
16 TIGR03156 GTP_HflX GTP-binding 99.6 4.8E-15 1E-19 146.9 15.9 155 32-251 187-343 (351)
17 KOG1423 Ras-like GTPase ERA [C 99.6 1.2E-15 2.6E-20 141.8 9.1 207 35-302 73-310 (379)
18 PRK11058 GTPase HflX; Provisio 99.6 1.4E-14 3E-19 146.9 15.7 127 33-218 196-324 (426)
19 TIGR00450 mnmE_trmE_thdF tRNA 99.6 6.6E-14 1.4E-18 142.7 20.4 156 32-256 201-356 (442)
20 COG0370 FeoB Fe2+ transport sy 99.6 7E-14 1.5E-18 144.0 17.4 154 35-255 4-159 (653)
21 cd04163 Era Era subfamily. Er 99.6 3.3E-14 7.1E-19 125.2 12.8 122 35-218 4-126 (168)
22 PRK12298 obgE GTPase CgtA; Rev 99.6 4.2E-14 9.1E-19 141.8 15.0 178 34-273 159-346 (390)
23 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 6.1E-14 1.3E-18 128.3 13.6 124 36-219 2-132 (196)
24 PRK12299 obgE GTPase CgtA; Rev 99.5 5.8E-14 1.3E-18 138.1 14.0 161 33-254 157-322 (335)
25 COG0218 Predicted GTPase [Gene 99.5 5.8E-14 1.3E-18 124.8 12.5 127 33-220 23-152 (200)
26 cd01878 HflX HflX subfamily. 99.5 1.7E-13 3.7E-18 126.0 15.0 154 32-249 39-194 (204)
27 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 5.6E-14 1.2E-18 124.6 11.2 117 35-218 1-117 (168)
28 COG1160 Predicted GTPases [Gen 99.5 3.6E-14 7.8E-19 140.1 10.8 156 33-246 177-334 (444)
29 PF01926 MMR_HSR1: 50S ribosom 99.5 1E-13 2.2E-18 115.7 12.0 115 36-212 1-116 (116)
30 cd01897 NOG NOG1 is a nucleola 99.5 1.6E-13 3.6E-18 121.8 13.3 154 35-251 1-159 (168)
31 cd01898 Obg Obg subfamily. Th 99.5 1E-13 2.2E-18 123.2 11.3 154 36-250 2-161 (170)
32 KOG1191 Mitochondrial GTPase [ 99.5 1.1E-12 2.4E-17 129.6 19.1 146 11-220 249-406 (531)
33 cd01895 EngA2 EngA2 subfamily. 99.5 3.3E-13 7.1E-18 119.9 13.5 128 34-219 2-129 (174)
34 COG2262 HflX GTPases [General 99.5 4E-13 8.7E-18 130.8 14.8 183 8-254 166-350 (411)
35 TIGR03594 GTPase_EngA ribosome 99.5 4.2E-13 9.2E-18 137.7 15.2 125 33-216 171-296 (429)
36 PRK03003 GTP-binding protein D 99.5 5.9E-13 1.3E-17 137.8 16.3 126 33-218 210-337 (472)
37 TIGR03598 GTPase_YsxC ribosome 99.5 2.8E-13 6E-18 122.1 12.0 126 32-218 16-144 (179)
38 PRK03003 GTP-binding protein D 99.5 3.2E-13 7E-18 139.8 13.4 159 33-257 37-196 (472)
39 PRK00454 engB GTP-binding prot 99.5 3.6E-13 7.8E-18 122.8 12.0 124 33-219 23-151 (196)
40 PRK00093 GTP-binding protein D 99.5 5.1E-13 1.1E-17 137.3 14.4 155 34-255 1-157 (435)
41 PRK00093 GTP-binding protein D 99.5 9.8E-13 2.1E-17 135.2 16.5 127 33-218 172-299 (435)
42 KOG0448 Mitofusin 1 GTPase, in 99.5 3.2E-11 7E-16 123.3 26.9 171 34-227 109-285 (749)
43 cd01861 Rab6 Rab6 subfamily. 99.5 2.8E-13 6E-18 119.4 10.7 150 36-251 2-153 (161)
44 cd01868 Rab11_like Rab11-like. 99.5 3.8E-13 8.3E-18 119.1 11.3 153 34-252 3-157 (165)
45 cd04112 Rab26 Rab26 subfamily. 99.5 4.8E-13 1.1E-17 121.8 12.2 116 136-264 50-167 (191)
46 TIGR03594 GTPase_EngA ribosome 99.5 5.4E-13 1.2E-17 136.9 14.0 153 36-255 1-155 (429)
47 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.4E-12 3E-17 114.0 14.6 144 36-249 3-146 (157)
48 cd01867 Rab8_Rab10_Rab13_like 99.5 3.5E-13 7.7E-18 119.8 10.5 153 34-252 3-157 (167)
49 PRK12296 obgE GTPase CgtA; Rev 99.5 3.8E-13 8.3E-18 137.3 12.0 162 33-256 158-336 (500)
50 cd01865 Rab3 Rab3 subfamily. 99.5 5.8E-13 1.3E-17 118.2 11.5 105 136-253 50-156 (165)
51 PRK12297 obgE GTPase CgtA; Rev 99.4 8.8E-13 1.9E-17 133.1 13.9 122 34-216 158-287 (424)
52 TIGR02729 Obg_CgtA Obg family 99.4 6.9E-13 1.5E-17 130.4 12.6 156 34-250 157-319 (329)
53 cd01866 Rab2 Rab2 subfamily. 99.4 1E-12 2.2E-17 117.0 12.3 152 34-252 4-158 (168)
54 cd01894 EngA1 EngA1 subfamily. 99.4 4.4E-13 9.6E-18 117.2 9.6 77 136-219 45-121 (157)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.4E-12 3E-17 115.6 12.2 104 137-253 52-157 (166)
56 cd04113 Rab4 Rab4 subfamily. 99.4 9.7E-13 2.1E-17 116.0 11.0 151 36-252 2-154 (161)
57 PRK04213 GTP-binding protein; 99.4 1.8E-12 3.9E-17 118.9 13.2 124 33-218 8-145 (201)
58 cd01879 FeoB Ferrous iron tran 99.4 1.3E-12 2.8E-17 114.6 11.3 103 136-250 43-147 (158)
59 cd04142 RRP22 RRP22 subfamily. 99.4 1.9E-12 4.1E-17 118.6 12.7 158 36-252 2-166 (198)
60 cd00880 Era_like Era (E. coli 99.4 2.4E-12 5.3E-17 111.9 12.9 78 135-220 44-121 (163)
61 cd04119 RJL RJL (RabJ-Like) su 99.4 1.4E-12 3E-17 115.4 11.5 151 36-253 2-160 (168)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.4 1.7E-12 3.7E-17 114.6 12.0 102 136-251 50-155 (164)
63 cd00881 GTP_translation_factor 99.4 1.6E-12 3.6E-17 117.3 11.9 69 135-218 61-129 (189)
64 cd04122 Rab14 Rab14 subfamily. 99.4 1.8E-12 4E-17 115.0 11.9 151 36-252 4-156 (166)
65 smart00173 RAS Ras subfamily o 99.4 2.1E-12 4.5E-17 114.2 12.2 104 136-252 48-154 (164)
66 PRK09518 bifunctional cytidyla 99.4 3.6E-12 7.8E-17 138.1 16.5 126 33-218 449-576 (712)
67 cd04171 SelB SelB subfamily. 99.4 1.4E-12 3E-17 115.0 10.9 99 135-250 50-156 (164)
68 smart00175 RAB Rab subfamily o 99.4 1.7E-12 3.7E-17 114.5 11.3 102 137-252 50-154 (164)
69 cd01862 Rab7 Rab7 subfamily. 99.4 1.6E-12 3.4E-17 115.8 11.1 105 137-254 50-161 (172)
70 cd04104 p47_IIGP_like p47 (47- 99.4 2.3E-12 5E-17 117.9 12.3 121 35-218 2-122 (197)
71 cd04157 Arl6 Arl6 subfamily. 99.4 2.4E-12 5.1E-17 113.4 11.9 105 136-253 45-157 (162)
72 cd04136 Rap_like Rap-like subf 99.4 1.8E-12 4E-17 114.3 11.2 103 136-252 49-155 (163)
73 PRK09554 feoB ferrous iron tra 99.4 1.8E-12 3.9E-17 140.1 13.3 159 35-256 4-164 (772)
74 cd01853 Toc34_like Toc34-like 99.4 5.5E-12 1.2E-16 119.1 14.9 129 33-220 30-166 (249)
75 cd00154 Rab Rab family. Rab G 99.4 1.4E-12 3.1E-17 113.7 9.9 148 36-250 2-152 (159)
76 cd04138 H_N_K_Ras_like H-Ras/N 99.4 3.1E-12 6.7E-17 112.4 11.7 102 137-252 50-154 (162)
77 cd04101 RabL4 RabL4 (Rab-like4 99.4 3.2E-12 7E-17 113.0 11.8 103 136-252 52-156 (164)
78 cd01881 Obg_like The Obg-like 99.4 2.1E-12 4.6E-17 115.3 10.7 79 135-219 43-136 (176)
79 cd04175 Rap1 Rap1 subgroup. T 99.4 3.1E-12 6.7E-17 113.2 11.5 103 136-251 49-154 (164)
80 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 4.8E-12 1E-16 114.4 12.7 115 36-217 5-123 (183)
81 cd04139 RalA_RalB RalA/RalB su 99.4 3.4E-12 7.5E-17 112.5 11.4 150 36-252 2-154 (164)
82 cd01890 LepA LepA subfamily. 99.4 2.7E-12 5.8E-17 115.3 10.6 68 135-217 66-133 (179)
83 cd04106 Rab23_lke Rab23-like s 99.4 2.9E-12 6.3E-17 112.9 10.5 101 136-250 51-153 (162)
84 COG3596 Predicted GTPase [Gene 99.4 2.1E-12 4.5E-17 119.5 9.7 125 33-220 37-165 (296)
85 cd01864 Rab19 Rab19 subfamily. 99.4 3.9E-12 8.4E-17 112.8 11.1 71 136-219 52-124 (165)
86 cd04109 Rab28 Rab28 subfamily. 99.4 3.1E-12 6.7E-17 118.8 10.9 107 136-255 50-161 (215)
87 PRK09518 bifunctional cytidyla 99.4 4.2E-12 9.1E-17 137.6 13.6 159 33-257 274-433 (712)
88 cd04114 Rab30 Rab30 subfamily. 99.4 4.1E-12 8.9E-17 112.9 11.2 121 33-219 6-128 (169)
89 cd01860 Rab5_related Rab5-rela 99.4 4.5E-12 9.9E-17 111.8 11.4 148 36-251 3-154 (163)
90 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.3E-11 2.7E-16 118.4 15.2 127 32-219 36-169 (313)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.4 5.7E-12 1.2E-16 111.7 12.1 102 135-250 49-159 (167)
92 cd04156 ARLTS1 ARLTS1 subfamil 99.4 6.5E-12 1.4E-16 110.5 12.3 69 135-217 43-115 (160)
93 cd04111 Rab39 Rab39 subfamily. 99.4 3.7E-12 7.9E-17 117.9 11.1 108 136-257 52-163 (211)
94 PRK15467 ethanolamine utilizat 99.4 7.4E-12 1.6E-16 110.4 12.6 102 140-256 41-143 (158)
95 cd04120 Rab12 Rab12 subfamily. 99.4 3.9E-12 8.4E-17 116.7 11.0 104 136-252 49-155 (202)
96 cd04127 Rab27A Rab27a subfamil 99.4 3.4E-12 7.4E-17 114.7 10.5 102 137-252 64-169 (180)
97 PF04548 AIG1: AIG1 family; I 99.4 2.1E-12 4.5E-17 119.6 9.3 132 36-227 2-139 (212)
98 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 3.7E-12 7.9E-17 113.8 10.2 153 36-255 2-160 (170)
99 cd04140 ARHI_like ARHI subfami 99.4 5.6E-12 1.2E-16 111.8 11.2 104 136-252 49-157 (165)
100 cd04154 Arl2 Arl2 subfamily. 99.4 5.6E-12 1.2E-16 112.8 11.1 146 33-250 13-165 (173)
101 smart00178 SAR Sar1p-like memb 99.4 8.4E-12 1.8E-16 113.0 12.3 114 33-217 16-132 (184)
102 cd04123 Rab21 Rab21 subfamily. 99.3 6.8E-12 1.5E-16 110.3 11.4 103 137-252 50-154 (162)
103 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 5.5E-12 1.2E-16 115.8 11.1 100 136-253 50-161 (201)
104 cd04144 Ras2 Ras2 subfamily. 99.3 7.4E-12 1.6E-16 113.9 11.8 108 137-257 48-160 (190)
105 cd04159 Arl10_like Arl10-like 99.3 1.3E-11 2.8E-16 107.7 12.8 71 136-219 44-117 (159)
106 cd04110 Rab35 Rab35 subfamily. 99.3 6.5E-12 1.4E-16 115.2 11.1 156 34-256 6-163 (199)
107 TIGR02528 EutP ethanolamine ut 99.3 7.7E-12 1.7E-16 107.9 10.8 94 139-250 38-135 (142)
108 PLN03118 Rab family protein; P 99.3 1E-11 2.2E-16 115.0 12.1 110 136-258 62-175 (211)
109 cd04125 RabA_like RabA-like su 99.3 1.4E-11 2.9E-16 111.9 12.4 107 136-255 49-157 (188)
110 cd04176 Rap2 Rap2 subgroup. T 99.3 8.6E-12 1.9E-16 110.2 10.6 101 137-251 50-154 (163)
111 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 1.4E-11 3E-16 110.2 12.0 101 136-253 50-157 (172)
112 PTZ00369 Ras-like protein; Pro 99.3 1.4E-11 3E-16 112.0 12.1 68 137-217 54-124 (189)
113 cd04158 ARD1 ARD1 subfamily. 99.3 1.5E-11 3.4E-16 109.5 12.2 107 136-256 43-157 (169)
114 cd00876 Ras Ras family. The R 99.3 8.2E-12 1.8E-16 109.5 10.1 148 36-250 1-151 (160)
115 PF05049 IIGP: Interferon-indu 99.3 7.5E-12 1.6E-16 123.0 10.7 128 3-215 16-153 (376)
116 cd00878 Arf_Arl Arf (ADP-ribos 99.3 2.4E-11 5.3E-16 106.7 12.8 71 136-219 43-116 (158)
117 cd04124 RabL2 RabL2 subfamily. 99.3 1.3E-11 2.8E-16 109.1 10.9 98 136-251 49-149 (161)
118 cd04151 Arl1 Arl1 subfamily. 99.3 1.3E-11 2.8E-16 108.6 10.8 70 136-218 43-115 (158)
119 cd01863 Rab18 Rab18 subfamily. 99.3 2.1E-11 4.6E-16 107.3 12.1 100 136-250 49-152 (161)
120 PF10662 PduV-EutP: Ethanolami 99.3 1.4E-11 3.1E-16 104.8 10.1 97 139-252 39-138 (143)
121 cd00879 Sar1 Sar1 subfamily. 99.3 3.5E-11 7.5E-16 109.2 13.4 114 33-217 18-134 (190)
122 cd04149 Arf6 Arf6 subfamily. 99.3 1.6E-11 3.4E-16 109.5 10.9 103 136-252 53-162 (168)
123 cd01876 YihA_EngB The YihA (En 99.3 1.7E-11 3.7E-16 108.1 11.0 78 137-219 46-126 (170)
124 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.2E-11 2.7E-16 110.7 10.1 68 136-217 59-130 (174)
125 PLN03110 Rab GTPase; Provision 99.3 2.3E-11 4.9E-16 113.1 12.1 150 34-249 12-163 (216)
126 cd04177 RSR1 RSR1 subgroup. R 99.3 2.1E-11 4.6E-16 108.4 11.4 102 136-250 49-154 (168)
127 cd01893 Miro1 Miro1 subfamily. 99.3 1.8E-11 4E-16 108.7 11.0 70 136-219 47-119 (166)
128 cd04116 Rab9 Rab9 subfamily. 99.3 2.5E-11 5.3E-16 108.1 11.7 147 34-250 5-161 (170)
129 cd04118 Rab24 Rab24 subfamily. 99.3 2E-11 4.2E-16 111.2 11.2 106 137-256 51-162 (193)
130 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.7E-11 3.7E-16 109.3 10.3 96 136-244 51-150 (170)
131 cd00157 Rho Rho (Ras homology) 99.3 8.3E-12 1.8E-16 111.0 8.3 69 137-219 49-120 (171)
132 cd04161 Arl2l1_Arl13_like Arl2 99.3 3.6E-11 7.9E-16 107.0 12.4 70 136-219 43-116 (167)
133 cd01891 TypA_BipA TypA (tyrosi 99.3 5.2E-11 1.1E-15 108.7 13.7 69 135-218 64-132 (194)
134 PLN03108 Rab family protein; P 99.3 3.1E-11 6.7E-16 111.6 12.3 147 34-250 6-158 (210)
135 cd04137 RheB Rheb (Ras Homolog 99.3 2.8E-11 6E-16 108.8 11.6 107 136-256 49-159 (180)
136 cd04147 Ras_dva Ras-dva subfam 99.3 3.1E-11 6.8E-16 110.5 11.4 68 136-217 47-118 (198)
137 cd04117 Rab15 Rab15 subfamily. 99.3 4E-11 8.7E-16 106.0 11.5 149 36-251 2-153 (161)
138 cd04146 RERG_RasL11_like RERG/ 99.3 2.2E-11 4.7E-16 107.9 9.7 70 137-218 48-121 (165)
139 smart00174 RHO Rho (Ras homolo 99.2 2.4E-11 5.2E-16 108.5 9.1 69 136-218 46-117 (174)
140 smart00177 ARF ARF-like small 99.2 8.7E-11 1.9E-15 105.4 12.5 69 136-218 57-129 (175)
141 cd04166 CysN_ATPS CysN_ATPS su 99.2 4.6E-11 9.9E-16 110.3 10.7 70 134-218 75-145 (208)
142 cd04148 RGK RGK subfamily. Th 99.2 1.2E-10 2.6E-15 108.5 13.5 109 136-259 50-162 (221)
143 cd04150 Arf1_5_like Arf1-Arf5- 99.2 4.3E-11 9.4E-16 105.6 10.0 69 136-218 44-116 (159)
144 cd04132 Rho4_like Rho4-like su 99.2 5.9E-11 1.3E-15 107.5 11.0 116 36-218 2-120 (187)
145 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 2E-10 4.3E-15 101.9 14.2 112 36-218 1-114 (164)
146 cd01889 SelB_euk SelB subfamil 99.2 5.8E-11 1.3E-15 108.2 10.7 67 135-218 67-135 (192)
147 PLN03071 GTP-binding nuclear p 99.2 4.3E-11 9.3E-16 111.4 9.9 105 136-256 62-168 (219)
148 PTZ00133 ADP-ribosylation fact 99.2 1.5E-10 3.2E-15 104.6 13.1 68 136-217 61-132 (182)
149 TIGR00437 feoB ferrous iron tr 99.2 4.5E-11 9.8E-16 126.4 11.1 110 136-257 41-152 (591)
150 cd00882 Ras_like_GTPase Ras-li 99.2 4.9E-11 1.1E-15 102.3 9.5 99 136-248 45-148 (157)
151 PLN00223 ADP-ribosylation fact 99.2 1.8E-10 4E-15 103.9 13.6 69 136-218 61-133 (181)
152 cd01874 Cdc42 Cdc42 subfamily. 99.2 5.3E-11 1.1E-15 106.8 9.7 115 36-218 3-120 (175)
153 TIGR00231 small_GTP small GTP- 99.2 1.4E-10 3.1E-15 100.6 12.0 29 35-64 2-30 (161)
154 cd04155 Arl3 Arl3 subfamily. 99.2 1.1E-10 2.5E-15 104.0 11.6 70 136-218 58-130 (173)
155 cd04121 Rab40 Rab40 subfamily. 99.2 9.8E-11 2.1E-15 106.3 11.3 104 136-257 55-164 (189)
156 cd01850 CDC_Septin CDC/Septin. 99.2 1.3E-10 2.8E-15 111.7 12.7 136 36-218 6-158 (276)
157 TIGR00487 IF-2 translation ini 99.2 9.2E-11 2E-15 123.4 12.6 157 30-255 83-245 (587)
158 cd00877 Ran Ran (Ras-related n 99.2 5.2E-11 1.1E-15 105.8 9.1 105 136-256 49-155 (166)
159 cd04128 Spg1 Spg1p. Spg1p (se 99.2 7.5E-11 1.6E-15 106.5 10.2 68 136-217 49-118 (182)
160 cd01896 DRG The developmentall 99.2 1.4E-10 3E-15 108.9 12.3 23 36-58 2-24 (233)
161 CHL00189 infB translation init 99.2 9.5E-11 2.1E-15 125.2 12.3 162 30-257 240-407 (742)
162 cd04143 Rhes_like Rhes_like su 99.2 2E-10 4.2E-15 108.8 12.8 106 136-255 48-166 (247)
163 cd01892 Miro2 Miro2 subfamily. 99.2 1.2E-10 2.7E-15 103.8 10.8 120 33-218 3-123 (169)
164 PF00009 GTP_EFTU: Elongation 99.2 1.3E-11 2.8E-16 112.2 4.5 69 133-216 67-135 (188)
165 TIGR00491 aIF-2 translation in 99.2 2.1E-10 4.6E-15 120.5 14.1 133 33-217 3-135 (590)
166 cd04126 Rab20 Rab20 subfamily. 99.2 2.1E-10 4.6E-15 106.5 12.5 69 136-217 44-114 (220)
167 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.2 4.2E-11 9.1E-16 104.8 7.0 157 33-256 21-181 (221)
168 cd04165 GTPBP1_like GTPBP1-lik 99.2 1.3E-10 2.8E-15 108.3 10.1 73 131-218 79-153 (224)
169 TIGR00993 3a0901s04IAP86 chlor 99.2 3.5E-10 7.7E-15 116.8 13.8 125 36-218 120-251 (763)
170 cd04169 RF3 RF3 subfamily. Pe 99.2 3.8E-10 8.2E-15 108.0 12.6 69 135-218 70-138 (267)
171 cd01870 RhoA_like RhoA-like su 99.1 2.4E-10 5.3E-15 102.1 10.5 116 35-218 2-120 (175)
172 PRK05306 infB translation init 99.1 3.3E-10 7.2E-15 122.1 13.3 157 30-256 286-448 (787)
173 TIGR00475 selB selenocysteine- 99.1 1.9E-10 4.2E-15 121.5 11.2 108 136-258 50-164 (581)
174 cd04130 Wrch_1 Wrch-1 subfamil 99.1 1.6E-10 3.5E-15 103.3 9.0 69 136-218 48-119 (173)
175 KOG1954 Endocytosis/signaling 99.1 3.4E-11 7.3E-16 114.8 4.7 168 33-219 57-227 (532)
176 cd01886 EF-G Elongation factor 99.1 2.4E-10 5.2E-15 109.5 10.7 68 135-217 63-130 (270)
177 cd01884 EF_Tu EF-Tu subfamily. 99.1 1.1E-10 2.4E-15 106.5 7.4 69 134-217 63-132 (195)
178 cd04134 Rho3 Rho3 subfamily. 99.1 2.1E-10 4.5E-15 104.3 8.6 69 136-218 48-119 (189)
179 cd04168 TetM_like Tet(M)-like 99.1 4.8E-10 1E-14 105.5 11.3 68 135-217 63-130 (237)
180 cd04133 Rop_like Rop subfamily 99.1 2.9E-10 6.4E-15 102.0 9.4 115 36-218 3-120 (176)
181 cd01888 eIF2_gamma eIF2-gamma 99.1 3.4E-10 7.4E-15 104.1 10.1 104 136-254 83-193 (203)
182 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 6.9E-10 1.5E-14 103.8 12.2 117 33-217 12-131 (232)
183 cd01871 Rac1_like Rac1-like su 99.1 5.5E-10 1.2E-14 100.1 11.1 68 136-217 49-119 (174)
184 KOG1489 Predicted GTP-binding 99.1 1.6E-10 3.6E-15 108.6 7.5 153 33-251 195-358 (366)
185 PRK09602 translation-associate 99.1 3E-09 6.5E-14 107.0 17.1 39 35-73 2-40 (396)
186 cd04170 EF-G_bact Elongation f 99.1 7E-10 1.5E-14 106.6 11.8 69 135-218 63-131 (268)
187 cd04135 Tc10 TC10 subfamily. 99.1 5.4E-10 1.2E-14 99.7 9.8 68 137-218 49-119 (174)
188 cd01885 EF2 EF2 (for archaea a 99.1 8E-10 1.7E-14 102.6 11.2 67 135-216 72-138 (222)
189 cd01899 Ygr210 Ygr210 subfamil 99.1 1.6E-09 3.4E-14 105.9 13.6 110 37-183 1-110 (318)
190 cd04105 SR_beta Signal recogni 99.1 1.3E-09 2.8E-14 100.2 12.3 70 136-218 48-124 (203)
191 cd04167 Snu114p Snu114p subfam 99.1 1.3E-09 2.8E-14 101.0 12.1 66 136-216 71-136 (213)
192 smart00176 RAN Ran (Ras-relate 99.1 5.6E-10 1.2E-14 102.3 9.1 107 136-258 44-152 (200)
193 cd04131 Rnd Rnd subfamily. Th 99.1 7.2E-10 1.6E-14 99.7 9.6 114 36-217 3-119 (178)
194 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 8.5E-10 1.8E-14 99.6 10.1 115 35-217 6-123 (182)
195 PRK12317 elongation factor 1-a 99.1 5.4E-10 1.2E-14 114.4 9.8 70 134-217 82-153 (425)
196 TIGR01393 lepA GTP-binding pro 99.1 1.1E-09 2.5E-14 115.8 12.1 167 34-255 3-175 (595)
197 KOG0084 GTPase Rab1/YPT1, smal 99.0 8.4E-10 1.8E-14 97.1 9.2 152 32-250 7-162 (205)
198 cd01875 RhoG RhoG subfamily. 99.0 1.1E-09 2.4E-14 99.7 10.1 115 36-218 5-122 (191)
199 PF00071 Ras: Ras family; Int 99.0 4.5E-10 9.7E-15 99.0 7.2 101 136-250 48-151 (162)
200 PRK05433 GTP-binding protein L 99.0 2.6E-09 5.7E-14 113.1 13.3 169 33-256 6-180 (600)
201 PRK10512 selenocysteinyl-tRNA- 99.0 1.2E-09 2.5E-14 116.0 9.9 108 134-258 49-164 (614)
202 KOG0078 GTP-binding protein SE 99.0 1.6E-09 3.5E-14 96.7 8.8 154 31-250 9-164 (207)
203 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 2.4E-09 5.3E-14 99.5 10.3 115 36-218 3-120 (222)
204 PF00025 Arf: ADP-ribosylation 99.0 1.4E-09 3.1E-14 97.5 8.2 70 135-218 57-130 (175)
205 KOG0092 GTPase Rab5/YPT51 and 99.0 7.7E-10 1.7E-14 97.0 6.0 155 36-258 7-165 (200)
206 PRK04004 translation initiatio 99.0 2.7E-09 5.9E-14 112.6 11.4 66 136-216 71-136 (586)
207 cd04102 RabL3 RabL3 (Rab-like3 99.0 9E-09 2E-13 94.3 13.3 69 137-218 55-144 (202)
208 cd04129 Rho2 Rho2 subfamily. 98.9 4.9E-09 1.1E-13 95.0 9.6 68 136-217 49-119 (187)
209 KOG1490 GTP-binding protein CR 98.9 3.5E-09 7.6E-14 105.0 8.8 157 4-220 137-298 (620)
210 PTZ00258 GTP-binding protein; 98.9 8.7E-09 1.9E-13 102.7 11.7 107 32-182 19-125 (390)
211 cd01883 EF1_alpha Eukaryotic e 98.9 2.8E-09 6.1E-14 99.2 7.8 71 134-217 75-151 (219)
212 cd01900 YchF YchF subfamily. 98.9 6.1E-09 1.3E-13 99.4 9.8 102 37-182 1-102 (274)
213 TIGR00484 EF-G translation elo 98.9 8.9E-09 1.9E-13 111.5 11.9 134 33-218 9-142 (689)
214 CHL00071 tufA elongation facto 98.9 7.1E-09 1.5E-13 105.5 10.3 70 134-218 73-143 (409)
215 cd01873 RhoBTB RhoBTB subfamil 98.9 6.7E-09 1.5E-13 94.8 9.1 66 136-217 66-134 (195)
216 COG1100 GTPase SAR1 and relate 98.9 1E-08 2.2E-13 95.2 9.9 118 35-220 6-128 (219)
217 TIGR02034 CysN sulfate adenyly 98.9 9.9E-09 2.1E-13 104.3 10.7 69 134-218 78-148 (406)
218 PF08477 Miro: Miro-like prote 98.9 4.6E-09 1E-13 87.5 6.9 24 36-59 1-24 (119)
219 PF00735 Septin: Septin; Inte 98.9 9.3E-09 2E-13 98.9 9.3 138 36-219 6-158 (281)
220 PRK00741 prfC peptide chain re 98.8 2.4E-08 5.1E-13 104.2 12.8 69 135-218 78-146 (526)
221 TIGR01394 TypA_BipA GTP-bindin 98.8 1.3E-08 2.7E-13 107.7 10.7 68 135-217 63-130 (594)
222 PRK09601 GTP-binding protein Y 98.8 2E-08 4.4E-13 99.0 11.3 102 35-183 3-107 (364)
223 TIGR03680 eif2g_arch translati 98.8 1.4E-08 3E-13 103.3 10.3 68 136-218 80-149 (406)
224 COG0536 Obg Predicted GTPase [ 98.8 9.6E-09 2.1E-13 98.0 8.4 124 36-221 161-293 (369)
225 PRK00007 elongation factor G; 98.8 1.1E-08 2.4E-13 110.7 10.2 69 135-218 74-142 (693)
226 KOG0093 GTPase Rab3, small G p 98.8 9.6E-09 2.1E-13 85.8 7.3 126 27-218 14-141 (193)
227 PRK12739 elongation factor G; 98.8 1.2E-08 2.6E-13 110.5 10.2 70 134-218 71-140 (691)
228 PRK05124 cysN sulfate adenylyl 98.8 3E-08 6.6E-13 102.4 12.7 102 133-250 104-215 (474)
229 PLN03127 Elongation factor Tu; 98.8 2E-08 4.4E-13 102.8 11.3 70 134-218 122-192 (447)
230 KOG0095 GTPase Rab30, small G 98.8 1.8E-08 4E-13 84.3 8.7 122 32-219 5-128 (213)
231 COG1163 DRG Predicted GTPase [ 98.8 7.5E-09 1.6E-13 98.0 7.1 89 35-184 64-152 (365)
232 PRK09435 membrane ATPase/prote 98.8 1.6E-07 3.5E-12 92.0 16.5 101 135-258 148-258 (332)
233 PRK10218 GTP-binding protein; 98.8 3.1E-08 6.8E-13 104.6 12.3 69 134-217 66-134 (607)
234 cd04103 Centaurin_gamma Centau 98.8 2.2E-08 4.7E-13 88.3 9.4 96 136-252 47-151 (158)
235 PRK12735 elongation factor Tu; 98.8 1.6E-08 3.5E-13 102.4 9.0 70 134-218 73-143 (396)
236 TIGR00503 prfC peptide chain r 98.8 3.8E-08 8.2E-13 102.7 11.8 69 134-217 78-146 (527)
237 TIGR02836 spore_IV_A stage IV 98.8 1E-07 2.3E-12 93.8 14.0 149 36-219 19-196 (492)
238 KOG0073 GTP-binding ADP-ribosy 98.8 7.8E-08 1.7E-12 82.1 11.3 155 35-261 17-179 (185)
239 PLN00023 GTP-binding protein; 98.8 3E-08 6.5E-13 95.9 9.8 68 137-218 84-166 (334)
240 KOG0075 GTP-binding ADP-ribosy 98.8 3E-08 6.6E-13 82.9 8.3 73 134-219 63-138 (186)
241 COG2229 Predicted GTPase [Gene 98.8 8.6E-08 1.9E-12 83.8 11.5 151 33-245 9-163 (187)
242 PRK05506 bifunctional sulfate 98.8 2.5E-08 5.4E-13 107.1 10.0 68 134-217 102-171 (632)
243 COG4917 EutP Ethanolamine util 98.8 1.8E-08 3.8E-13 82.2 6.6 30 35-64 2-31 (148)
244 PF09439 SRPRB: Signal recogni 98.8 2.3E-08 5E-13 89.1 8.0 117 34-218 3-127 (181)
245 TIGR00483 EF-1_alpha translati 98.8 1.4E-08 3.1E-13 103.9 7.5 68 135-217 84-155 (426)
246 TIGR00485 EF-Tu translation el 98.8 2.2E-08 4.7E-13 101.5 8.7 69 135-218 74-143 (394)
247 cd01882 BMS1 Bms1. Bms1 is an 98.7 2.9E-08 6.4E-13 92.7 8.6 70 132-219 79-149 (225)
248 PRK12736 elongation factor Tu; 98.7 2.5E-08 5.4E-13 101.0 8.7 70 134-218 73-143 (394)
249 KOG0410 Predicted GTP binding 98.7 3.3E-08 7.2E-13 93.4 8.4 131 28-217 172-308 (410)
250 PTZ00132 GTP-binding nuclear p 98.7 1.7E-07 3.7E-12 86.9 12.7 100 136-252 58-160 (215)
251 PLN03126 Elongation factor Tu; 98.7 4.4E-08 9.6E-13 100.9 9.4 70 134-218 142-212 (478)
252 TIGR00490 aEF-2 translation el 98.7 8.8E-08 1.9E-12 104.2 12.0 69 134-217 84-152 (720)
253 PRK00049 elongation factor Tu; 98.7 4.6E-08 1E-12 99.1 8.8 69 134-217 73-142 (396)
254 PRK13351 elongation factor G; 98.7 1.1E-07 2.4E-12 103.2 12.1 69 135-218 72-140 (687)
255 PRK04000 translation initiatio 98.7 9.5E-08 2E-12 97.2 10.6 69 136-218 85-154 (411)
256 KOG0098 GTPase Rab2, small G p 98.7 1.1E-07 2.4E-12 82.9 9.0 120 33-219 5-127 (216)
257 PRK07560 elongation factor EF- 98.7 1.4E-07 3E-12 102.9 11.6 133 33-216 19-152 (731)
258 KOG2486 Predicted GTPase [Gene 98.6 1.7E-07 3.7E-12 87.1 10.2 159 32-250 134-306 (320)
259 PTZ00416 elongation factor 2; 98.6 1.2E-07 2.5E-12 104.6 10.8 66 136-216 92-157 (836)
260 cd01858 NGP_1 NGP-1. Autoanti 98.6 3.7E-08 7.9E-13 86.7 5.3 29 36-64 104-132 (157)
261 PLN00116 translation elongatio 98.6 1.4E-07 3E-12 104.1 11.0 66 136-216 98-163 (843)
262 cd04178 Nucleostemin_like Nucl 98.6 5.8E-08 1.3E-12 86.6 6.4 30 35-64 118-147 (172)
263 KOG0091 GTPase Rab39, small G 98.6 1.2E-07 2.5E-12 80.9 7.0 109 136-257 58-170 (213)
264 PTZ00327 eukaryotic translatio 98.6 2.8E-07 6E-12 94.5 11.0 68 136-218 117-186 (460)
265 cd01849 YlqF_related_GTPase Yl 98.6 7.4E-08 1.6E-12 84.6 5.6 39 33-71 99-138 (155)
266 TIGR00750 lao LAO/AO transport 98.6 4.1E-06 8.9E-11 81.8 18.0 100 135-257 126-235 (300)
267 COG0532 InfB Translation initi 98.6 4.9E-07 1.1E-11 91.5 11.4 156 33-257 4-167 (509)
268 KOG0080 GTPase Rab18, small G 98.6 1.1E-07 2.4E-12 80.8 5.6 117 33-216 10-130 (209)
269 PLN00043 elongation factor 1-a 98.5 4.3E-07 9.4E-12 93.2 10.3 71 133-216 82-158 (447)
270 cd01855 YqeH YqeH. YqeH is an 98.5 3.2E-07 6.8E-12 83.4 8.0 25 35-59 128-152 (190)
271 PRK12740 elongation factor G; 98.5 4.6E-07 9.9E-12 98.2 10.7 69 135-218 59-127 (668)
272 KOG0070 GTP-binding ADP-ribosy 98.5 4.3E-07 9.4E-12 79.5 7.8 147 36-254 19-172 (181)
273 COG5019 CDC3 Septin family pro 98.5 1.2E-06 2.7E-11 84.8 11.6 82 136-219 82-178 (373)
274 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3E-07 6.4E-12 79.4 6.7 25 36-60 85-109 (141)
275 KOG2655 Septin family protein 98.5 7.8E-07 1.7E-11 86.7 9.7 83 136-220 79-175 (366)
276 COG0699 Predicted GTPases (dyn 98.5 1.3E-06 2.9E-11 92.3 12.4 312 87-441 4-315 (546)
277 KOG0394 Ras-related GTPase [Ge 98.4 2.9E-07 6.2E-12 80.3 5.6 151 33-249 8-167 (210)
278 TIGR03596 GTPase_YlqF ribosome 98.4 7.2E-07 1.6E-11 86.0 9.1 31 34-64 118-148 (276)
279 PRK13768 GTPase; Provisional 98.4 1.5E-06 3.3E-11 82.5 11.1 74 136-219 97-178 (253)
280 PTZ00141 elongation factor 1- 98.4 3.3E-07 7.1E-12 94.1 6.5 69 134-215 83-157 (446)
281 KOG1145 Mitochondrial translat 98.4 2E-06 4.3E-11 86.7 11.3 116 32-216 151-266 (683)
282 cd01851 GBP Guanylate-binding 98.4 1.3E-06 2.8E-11 81.5 9.5 37 33-69 6-45 (224)
283 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.9E-06 4.2E-11 83.5 10.9 30 34-63 121-150 (287)
284 TIGR01425 SRP54_euk signal rec 98.4 3.9E-06 8.4E-11 84.8 12.9 81 135-226 182-262 (429)
285 KOG0395 Ras-related GTPase [Ge 98.3 2E-06 4.4E-11 78.3 8.6 146 35-248 4-153 (196)
286 KOG3883 Ras family small GTPas 98.3 6.8E-06 1.5E-10 69.5 10.8 71 136-220 60-135 (198)
287 cd01856 YlqF YlqF. Proteins o 98.3 2.7E-06 5.9E-11 75.9 9.1 28 34-61 115-142 (171)
288 COG5256 TEF1 Translation elong 98.3 6E-06 1.3E-10 81.1 12.0 69 134-217 83-159 (428)
289 COG1161 Predicted GTPases [Gen 98.3 6.4E-07 1.4E-11 88.0 5.3 31 36-71 134-164 (322)
290 KOG1707 Predicted Ras related/ 98.3 3.5E-06 7.7E-11 85.7 9.7 118 36-221 11-133 (625)
291 KOG0087 GTPase Rab11/YPT3, sma 98.3 5E-06 1.1E-10 74.3 9.5 120 31-217 11-133 (222)
292 COG0480 FusA Translation elong 98.3 2.6E-06 5.7E-11 91.0 9.2 135 33-218 9-143 (697)
293 PRK12288 GTPase RsgA; Reviewed 98.3 2.2E-06 4.7E-11 84.9 7.9 26 36-61 207-232 (347)
294 PRK12289 GTPase RsgA; Reviewed 98.3 1.7E-06 3.7E-11 85.7 7.1 28 36-63 174-201 (352)
295 TIGR00157 ribosome small subun 98.3 4.3E-06 9.4E-11 79.0 9.4 26 35-60 121-146 (245)
296 COG0012 Predicted GTPase, prob 98.2 6.2E-06 1.3E-10 80.5 10.2 106 35-183 3-108 (372)
297 KOG1547 Septin CDC10 and relat 98.2 8.9E-06 1.9E-10 74.0 10.4 80 137-218 105-199 (336)
298 PRK11889 flhF flagellar biosyn 98.2 1.3E-05 2.9E-10 79.4 11.9 79 136-227 321-401 (436)
299 PRK13796 GTPase YqeH; Provisio 98.2 1.6E-06 3.5E-11 86.8 5.4 23 36-58 162-184 (365)
300 KOG0079 GTP-binding protein H- 98.2 1.9E-06 4.1E-11 72.3 4.7 121 32-219 6-128 (198)
301 TIGR03597 GTPase_YqeH ribosome 98.2 1.7E-06 3.6E-11 86.6 4.9 24 35-58 155-178 (360)
302 TIGR00092 GTP-binding protein 98.2 8E-06 1.7E-10 80.8 9.5 105 35-183 3-108 (368)
303 PF03193 DUF258: Protein of un 98.2 1.7E-06 3.7E-11 75.6 4.2 27 35-61 36-62 (161)
304 PTZ00099 rab6; Provisional 98.2 3.8E-06 8.3E-11 75.3 6.5 115 135-263 28-145 (176)
305 KOG0462 Elongation factor-type 98.1 8.9E-06 1.9E-10 82.2 8.9 133 34-218 60-192 (650)
306 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 1.2E-05 2.6E-10 74.9 9.2 120 36-219 1-127 (232)
307 PF00448 SRP54: SRP54-type pro 98.1 4E-06 8.7E-11 76.4 5.8 81 136-227 84-164 (196)
308 KOG0090 Signal recognition par 98.1 9.8E-06 2.1E-10 72.7 7.8 71 137-220 83-162 (238)
309 KOG0086 GTPase Rab4, small G p 98.1 1.3E-05 2.7E-10 67.8 7.8 122 31-218 6-129 (214)
310 PRK12726 flagellar biosynthesi 98.1 6.4E-05 1.4E-09 74.4 13.9 151 35-227 207-366 (407)
311 KOG1486 GTP-binding protein DR 98.1 4.2E-06 9.2E-11 76.6 5.1 24 35-58 63-86 (364)
312 PF03029 ATP_bind_1: Conserved 98.1 6.5E-06 1.4E-10 77.4 6.5 18 39-56 1-18 (238)
313 PRK14723 flhF flagellar biosyn 98.1 8.8E-06 1.9E-10 87.3 8.1 163 36-240 187-358 (767)
314 PRK06731 flhF flagellar biosyn 98.1 6.4E-05 1.4E-09 71.8 13.2 80 136-227 155-235 (270)
315 cd01859 MJ1464 MJ1464. This f 98.1 2.4E-05 5.3E-10 68.5 9.3 26 34-59 101-126 (156)
316 COG1217 TypA Predicted membran 98.0 1E-05 2.2E-10 80.2 7.0 69 136-219 68-136 (603)
317 KOG1491 Predicted GTP-binding 98.0 2E-05 4.3E-10 75.5 8.4 102 34-182 20-124 (391)
318 cd03112 CobW_like The function 98.0 2.2E-05 4.8E-10 69.1 8.0 23 35-57 1-23 (158)
319 KOG0074 GTP-binding ADP-ribosy 98.0 4.7E-05 1E-09 63.6 9.3 113 35-217 18-133 (185)
320 cd03114 ArgK-like The function 98.0 6.1E-05 1.3E-09 65.5 10.6 58 135-214 91-148 (148)
321 KOG4252 GTP-binding protein [S 98.0 1.2E-05 2.6E-10 69.8 5.8 68 137-219 70-140 (246)
322 KOG0097 GTPase Rab14, small G 98.0 2.7E-05 5.9E-10 64.8 7.5 121 33-219 10-132 (215)
323 PRK14722 flhF flagellar biosyn 98.0 9.4E-06 2E-10 80.7 5.5 23 35-57 138-160 (374)
324 COG1162 Predicted GTPases [Gen 98.0 1.9E-05 4E-10 75.5 7.3 22 36-57 166-187 (301)
325 PRK00098 GTPase RsgA; Reviewed 98.0 4.2E-05 9.1E-10 74.5 9.8 24 36-59 166-189 (298)
326 KOG0468 U5 snRNP-specific prot 97.9 2.8E-05 6.2E-10 80.0 8.4 133 34-216 128-262 (971)
327 KOG0458 Elongation factor 1 al 97.9 6.8E-06 1.5E-10 83.7 4.0 103 133-248 252-370 (603)
328 KOG1424 Predicted GTP-binding 97.9 6.8E-06 1.5E-10 82.5 3.7 33 34-71 314-346 (562)
329 PRK14974 cell division protein 97.9 8.3E-05 1.8E-09 73.2 11.2 81 136-227 223-303 (336)
330 PRK14721 flhF flagellar biosyn 97.9 9.9E-05 2.1E-09 74.7 11.8 81 136-227 270-350 (420)
331 COG0481 LepA Membrane GTPase L 97.9 4.2E-05 9.2E-10 76.2 8.7 171 33-255 8-181 (603)
332 KOG0071 GTP-binding ADP-ribosy 97.9 7.9E-05 1.7E-09 62.3 8.8 90 136-239 61-155 (180)
333 PRK10416 signal recognition pa 97.9 3.9E-05 8.5E-10 75.2 8.4 84 135-227 196-283 (318)
334 KOG0081 GTPase Rab27, small G 97.9 5.1E-06 1.1E-10 70.6 1.7 98 137-249 68-170 (219)
335 PRK14845 translation initiatio 97.9 9.2E-05 2E-09 82.5 11.7 68 135-217 525-592 (1049)
336 cd01854 YjeQ_engC YjeQ/EngC. 97.9 4.7E-05 1E-09 73.8 8.4 27 35-61 162-188 (287)
337 KOG0076 GTP-binding ADP-ribosy 97.9 1.8E-05 4E-10 68.5 4.8 110 135-257 68-184 (197)
338 PF03308 ArgK: ArgK protein; 97.9 8.6E-05 1.9E-09 69.3 9.5 60 135-216 121-180 (266)
339 PRK05703 flhF flagellar biosyn 97.8 0.00016 3.4E-09 73.8 12.0 82 136-227 300-381 (424)
340 PRK12727 flagellar biosynthesi 97.8 5.1E-05 1.1E-09 78.1 8.1 24 34-57 350-373 (559)
341 COG1703 ArgK Putative periplas 97.8 0.0015 3.2E-08 62.1 16.4 24 33-56 50-73 (323)
342 COG4108 PrfC Peptide chain rel 97.8 0.0001 2.2E-09 72.9 8.9 137 35-219 13-149 (528)
343 cd03115 SRP The signal recogni 97.8 5.9E-05 1.3E-09 67.3 6.9 78 136-224 83-160 (173)
344 TIGR00064 ftsY signal recognit 97.8 0.00021 4.5E-09 68.7 11.0 83 135-227 154-241 (272)
345 PRK00771 signal recognition pa 97.8 0.0007 1.5E-08 69.1 15.0 79 137-227 177-256 (437)
346 PRK12723 flagellar biosynthesi 97.7 0.00019 4.1E-09 72.0 10.6 152 35-227 175-336 (388)
347 KOG1532 GTPase XAB1, interacts 97.7 0.00024 5.3E-09 66.2 10.3 25 33-57 18-42 (366)
348 PRK12724 flagellar biosynthesi 97.7 0.00029 6.3E-09 70.8 11.3 81 135-227 299-383 (432)
349 PRK10867 signal recognition pa 97.7 0.0002 4.4E-09 72.8 10.1 81 135-226 183-263 (433)
350 KOG2485 Conserved ATP/GTP bind 97.7 6.2E-05 1.3E-09 71.5 5.6 26 33-58 142-167 (335)
351 TIGR03348 VI_IcmF type VI secr 97.7 0.00022 4.8E-09 81.9 10.9 56 4-63 83-138 (1169)
352 TIGR00073 hypB hydrogenase acc 97.7 0.00027 5.8E-09 65.1 9.6 25 33-57 21-45 (207)
353 KOG1144 Translation initiation 97.7 0.00026 5.7E-09 73.9 10.3 133 32-216 473-605 (1064)
354 TIGR00101 ureG urease accessor 97.6 0.00041 8.9E-09 63.4 9.8 22 36-57 3-24 (199)
355 KOG0072 GTP-binding ADP-ribosy 97.6 0.00046 1E-08 58.0 8.7 71 135-218 61-134 (182)
356 KOG0077 Vesicle coat complex C 97.6 0.00021 4.5E-09 61.6 6.7 118 31-219 17-137 (193)
357 TIGR00959 ffh signal recogniti 97.6 0.00073 1.6E-08 68.8 11.8 81 136-227 183-263 (428)
358 KOG3859 Septins (P-loop GTPase 97.6 0.00029 6.2E-09 65.7 8.0 133 36-219 44-192 (406)
359 COG3276 SelB Selenocysteine-sp 97.5 0.00028 6.2E-09 70.1 8.3 107 137-259 51-161 (447)
360 COG1419 FlhF Flagellar GTP-bin 97.5 0.00095 2.1E-08 66.3 11.8 161 35-239 204-372 (407)
361 KOG0088 GTPase Rab21, small G 97.5 0.00014 3.1E-09 61.9 5.1 68 136-217 62-132 (218)
362 COG0541 Ffh Signal recognition 97.4 0.0017 3.7E-08 64.8 11.3 79 135-225 182-261 (451)
363 KOG2484 GTPase [General functi 97.4 0.00029 6.3E-09 69.0 5.7 31 35-65 253-283 (435)
364 KOG1143 Predicted translation 97.4 0.00044 9.6E-09 67.0 6.8 144 36-219 169-319 (591)
365 COG5192 BMS1 GTP-binding prote 97.2 0.0012 2.7E-08 67.0 8.7 69 134-220 111-180 (1077)
366 COG0050 TufB GTPases - transla 97.2 0.00088 1.9E-08 63.2 7.1 130 36-219 14-144 (394)
367 PRK06995 flhF flagellar biosyn 97.2 0.00095 2.1E-08 68.7 7.5 92 136-240 335-426 (484)
368 COG3640 CooC CO dehydrogenase 97.2 0.0026 5.6E-08 58.4 9.4 86 136-245 134-221 (255)
369 KOG1487 GTP-binding protein DR 97.2 0.00034 7.3E-09 64.7 3.5 24 35-58 60-83 (358)
370 KOG0780 Signal recognition par 97.1 0.00037 8.1E-09 68.0 3.8 80 135-225 183-262 (483)
371 KOG0393 Ras-related small GTPa 97.1 0.0006 1.3E-08 61.4 4.5 115 36-217 6-123 (198)
372 COG5257 GCD11 Translation init 97.1 0.0015 3.3E-08 62.4 7.1 68 136-220 86-157 (415)
373 KOG2203 GTP-binding protein [G 96.9 0.002 4.2E-08 65.5 6.3 30 30-59 33-62 (772)
374 KOG0083 GTPase Rab26/Rab37, sm 96.8 0.00034 7.3E-09 57.9 0.5 96 136-248 47-148 (192)
375 COG2895 CysN GTPases - Sulfate 96.8 0.0047 1E-07 59.9 8.2 145 33-221 5-157 (431)
376 PRK01889 GTPase RsgA; Reviewed 96.8 0.0023 4.9E-08 64.0 6.4 24 36-59 197-220 (356)
377 KOG0461 Selenocysteine-specifi 96.8 0.006 1.3E-07 58.8 8.2 90 136-245 70-174 (522)
378 cd01859 MJ1464 MJ1464. This f 96.6 0.0035 7.6E-08 54.7 5.6 90 162-255 2-91 (156)
379 KOG0467 Translation elongation 96.4 0.0067 1.5E-07 64.1 6.9 130 33-216 8-137 (887)
380 KOG2749 mRNA cleavage and poly 96.4 0.043 9.3E-07 53.4 11.7 39 33-77 102-140 (415)
381 KOG2423 Nucleolar GTPase [Gene 96.4 0.0027 5.9E-08 62.2 3.5 24 36-59 309-332 (572)
382 PRK11537 putative GTP-binding 96.4 0.012 2.5E-07 57.9 8.0 25 33-57 3-27 (318)
383 KOG1534 Putative transcription 96.3 0.0091 2E-07 53.8 6.2 21 36-56 5-25 (273)
384 TIGR02868 CydC thiol reductant 96.2 0.022 4.7E-07 60.3 9.7 23 36-58 363-385 (529)
385 PF05879 RHD3: Root hair defec 96.2 0.0043 9.3E-08 67.8 4.2 20 40-59 1-20 (742)
386 KOG4181 Uncharacterized conser 96.2 0.14 3.1E-06 49.7 13.6 26 33-58 187-212 (491)
387 TIGR00157 ribosome small subun 96.1 0.0028 6.1E-08 59.9 2.0 90 162-252 26-115 (245)
388 COG1341 Predicted GTPase or GT 96.1 0.064 1.4E-06 53.4 11.3 25 33-57 72-96 (398)
389 cd01855 YqeH YqeH. YqeH is an 96.1 0.022 4.7E-07 51.5 7.6 91 161-255 23-120 (190)
390 PF13555 AAA_29: P-loop contai 96.1 0.0063 1.4E-07 44.1 3.1 21 36-56 25-45 (62)
391 COG3840 ThiQ ABC-type thiamine 96.0 0.006 1.3E-07 54.0 3.2 28 36-64 27-54 (231)
392 KOG1533 Predicted GTPase [Gene 95.9 0.024 5.2E-07 52.1 7.0 20 37-56 5-24 (290)
393 COG4988 CydD ABC-type transpor 95.9 0.028 6.1E-07 58.2 8.2 28 36-65 349-376 (559)
394 COG5258 GTPBP1 GTPase [General 95.8 0.011 2.4E-07 57.9 4.6 69 138-219 203-271 (527)
395 PRK13695 putative NTPase; Prov 95.8 0.16 3.5E-06 45.1 11.9 22 36-57 2-23 (174)
396 COG1136 SalX ABC-type antimicr 95.8 0.008 1.7E-07 55.6 3.4 57 159-216 147-205 (226)
397 cd00071 GMPK Guanosine monopho 95.7 0.01 2.2E-07 50.8 3.5 21 37-57 2-22 (137)
398 PF06858 NOG1: Nucleolar GTP-b 95.7 0.022 4.7E-07 40.4 4.4 53 162-214 2-58 (58)
399 cd01858 NGP_1 NGP-1. Autoanti 95.7 0.021 4.6E-07 49.9 5.6 52 166-218 2-54 (157)
400 PRK12289 GTPase RsgA; Reviewed 95.7 0.013 2.9E-07 58.2 4.6 87 163-253 80-168 (352)
401 COG0552 FtsY Signal recognitio 95.7 0.25 5.5E-06 48.1 13.0 81 136-225 222-306 (340)
402 PRK11174 cysteine/glutathione 95.6 0.076 1.6E-06 56.9 10.7 25 36-62 378-402 (588)
403 KOG3886 GTP-binding protein [S 95.6 0.014 3.1E-07 53.3 4.1 75 137-220 54-133 (295)
404 PF00005 ABC_tran: ABC transpo 95.6 0.0092 2E-07 50.7 2.8 23 36-58 13-35 (137)
405 cd02038 FleN-like FleN is a me 95.6 0.073 1.6E-06 45.5 8.3 64 136-216 45-110 (139)
406 PF13521 AAA_28: AAA domain; P 95.5 0.0076 1.6E-07 53.1 2.2 22 36-57 1-22 (163)
407 cd03111 CpaE_like This protein 95.5 0.14 3E-06 41.6 9.4 61 137-212 44-106 (106)
408 COG1101 PhnK ABC-type uncharac 95.5 0.0098 2.1E-07 54.1 2.7 27 36-63 34-60 (263)
409 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.091 2E-06 41.0 8.0 20 37-56 2-21 (99)
410 KOG0464 Elongation factor G [T 95.5 0.0094 2E-07 58.7 2.6 134 33-218 36-169 (753)
411 COG1116 TauB ABC-type nitrate/ 95.4 0.011 2.4E-07 55.0 3.0 23 36-58 31-53 (248)
412 COG4107 PhnK ABC-type phosphon 95.4 0.014 3E-07 51.3 3.1 31 36-68 34-64 (258)
413 TIGR03796 NHPM_micro_ABC1 NHPM 95.4 0.099 2.1E-06 57.4 10.6 23 36-58 507-529 (710)
414 cd01130 VirB11-like_ATPase Typ 95.3 0.014 2.9E-07 52.8 3.1 22 36-57 27-48 (186)
415 PF03205 MobB: Molybdopterin g 95.3 0.013 2.8E-07 50.4 2.7 23 35-57 1-23 (140)
416 COG0194 Gmk Guanylate kinase [ 95.3 0.013 2.8E-07 52.1 2.7 36 36-71 6-41 (191)
417 TIGR03263 guanyl_kin guanylate 95.3 0.018 3.9E-07 51.4 3.8 22 36-57 3-24 (180)
418 KOG0463 GTP-binding protein GP 95.2 0.048 1.1E-06 53.3 6.5 23 36-58 135-157 (641)
419 TIGR03797 NHPM_micro_ABC2 NHPM 95.2 0.12 2.5E-06 56.6 10.4 23 36-58 481-503 (686)
420 KOG1707 Predicted Ras related/ 95.2 0.075 1.6E-06 54.9 8.1 27 33-59 424-450 (625)
421 PRK13657 cyclic beta-1,2-gluca 95.1 0.11 2.4E-06 55.7 9.9 23 36-58 363-385 (588)
422 TIGR02857 CydD thiol reductant 95.1 0.11 2.4E-06 54.8 9.8 23 36-58 350-372 (529)
423 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.019 4.1E-07 49.5 3.3 23 36-58 28-50 (144)
424 TIGR02475 CobW cobalamin biosy 95.1 0.16 3.4E-06 50.5 10.2 25 33-57 3-27 (341)
425 cd03225 ABC_cobalt_CbiO_domain 95.1 0.019 4.1E-07 52.8 3.5 29 36-66 29-57 (211)
426 PRK00300 gmk guanylate kinase; 95.1 0.019 4.2E-07 52.5 3.4 36 36-71 7-43 (205)
427 cd03110 Fer4_NifH_child This p 95.0 0.094 2E-06 46.8 7.6 67 134-217 91-157 (179)
428 COG0523 Putative GTPases (G3E 95.0 0.091 2E-06 51.6 8.0 25 34-58 1-25 (323)
429 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.02 4.4E-07 52.9 3.3 22 36-57 32-53 (218)
430 cd03264 ABC_drug_resistance_li 95.0 0.021 4.5E-07 52.5 3.4 29 36-66 27-55 (211)
431 cd03261 ABC_Org_Solvent_Resist 95.0 0.02 4.4E-07 53.6 3.3 22 36-57 28-49 (235)
432 TIGR03499 FlhF flagellar biosy 95.0 0.029 6.3E-07 54.2 4.4 23 35-57 195-217 (282)
433 TIGR03375 type_I_sec_LssB type 95.0 0.15 3.2E-06 55.9 10.5 23 36-58 493-515 (694)
434 COG4604 CeuD ABC-type enteroch 95.0 0.11 2.4E-06 46.8 7.6 37 31-69 21-60 (252)
435 TIGR01166 cbiO cobalt transpor 94.9 0.023 4.9E-07 51.4 3.4 23 36-58 20-42 (190)
436 COG0410 LivF ABC-type branched 94.9 0.023 5.1E-07 52.2 3.4 28 36-65 31-58 (237)
437 TIGR01360 aden_kin_iso1 adenyl 94.9 0.021 4.6E-07 51.2 3.1 23 33-55 2-24 (188)
438 cd02042 ParA ParA and ParB of 94.9 0.24 5.3E-06 39.7 9.1 33 136-183 40-72 (104)
439 TIGR01193 bacteriocin_ABC ABC- 94.9 0.14 3.1E-06 56.2 10.0 23 36-58 502-524 (708)
440 PRK14737 gmk guanylate kinase; 94.9 0.03 6.4E-07 50.6 3.9 36 36-71 6-42 (186)
441 cd03265 ABC_DrrA DrrA is the A 94.9 0.023 5E-07 52.6 3.3 22 36-57 28-49 (220)
442 cd03280 ABC_MutS2 MutS2 homolo 94.8 0.32 6.9E-06 44.3 10.8 20 36-55 30-49 (200)
443 TIGR02673 FtsE cell division A 94.8 0.024 5.3E-07 52.2 3.4 23 36-58 30-52 (214)
444 cd03215 ABC_Carb_Monos_II This 94.8 0.027 5.9E-07 50.5 3.6 23 36-58 28-50 (182)
445 cd03224 ABC_TM1139_LivF_branch 94.8 0.025 5.3E-07 52.5 3.4 23 36-58 28-50 (222)
446 PRK11160 cysteine/glutathione 94.8 0.17 3.8E-06 54.0 10.3 23 36-58 368-390 (574)
447 PRK13541 cytochrome c biogenes 94.8 0.027 5.8E-07 51.2 3.5 23 36-58 28-50 (195)
448 TIGR00958 3a01208 Conjugate Tr 94.8 0.16 3.5E-06 55.7 10.2 23 36-58 509-531 (711)
449 COG4962 CpaF Flp pilus assembl 94.8 0.048 1E-06 53.2 5.3 22 36-57 175-196 (355)
450 cd03218 ABC_YhbG The ABC trans 94.8 0.027 5.9E-07 52.6 3.6 23 36-58 28-50 (232)
451 PRK13851 type IV secretion sys 94.8 0.023 5.1E-07 56.3 3.3 32 35-68 163-194 (344)
452 cd03226 ABC_cobalt_CbiO_domain 94.8 0.026 5.6E-07 51.7 3.3 23 36-58 28-50 (205)
453 TIGR00960 3a0501s02 Type II (G 94.8 0.025 5.5E-07 52.2 3.3 22 36-57 31-52 (216)
454 cd03269 ABC_putative_ATPase Th 94.8 0.026 5.6E-07 51.9 3.4 22 36-57 28-49 (210)
455 cd03229 ABC_Class3 This class 94.8 0.028 6.1E-07 50.2 3.5 22 36-57 28-49 (178)
456 cd03259 ABC_Carb_Solutes_like 94.8 0.027 5.9E-07 51.8 3.5 22 36-57 28-49 (213)
457 smart00010 small_GTPase Small 94.7 0.11 2.4E-06 42.7 6.9 24 36-59 2-25 (124)
458 cd03263 ABC_subfamily_A The AB 94.7 0.027 5.9E-07 52.1 3.4 23 36-58 30-52 (220)
459 TIGR03596 GTPase_YlqF ribosome 94.7 0.085 1.8E-06 50.8 6.9 87 164-258 13-101 (276)
460 cd03258 ABC_MetN_methionine_tr 94.7 0.03 6.5E-07 52.3 3.6 28 36-65 33-60 (233)
461 PRK01889 GTPase RsgA; Reviewed 94.7 0.014 3.1E-07 58.3 1.5 77 170-249 110-186 (356)
462 cd03266 ABC_NatA_sodium_export 94.7 0.028 6.1E-07 51.9 3.4 22 36-57 33-54 (218)
463 cd02019 NK Nucleoside/nucleoti 94.7 0.03 6.5E-07 41.6 2.9 21 37-57 2-22 (69)
464 PRK11629 lolD lipoprotein tran 94.7 0.027 5.9E-07 52.7 3.3 22 36-57 37-58 (233)
465 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.028 6.1E-07 52.0 3.4 23 36-58 32-54 (220)
466 COG4559 ABC-type hemin transpo 94.6 0.03 6.5E-07 50.9 3.3 27 36-63 29-55 (259)
467 cd03262 ABC_HisP_GlnQ_permease 94.6 0.03 6.5E-07 51.5 3.5 22 36-57 28-49 (213)
468 PRK13540 cytochrome c biogenes 94.6 0.031 6.8E-07 51.0 3.6 24 35-58 28-51 (200)
469 cd03292 ABC_FtsE_transporter F 94.6 0.028 6.1E-07 51.7 3.3 22 36-57 29-50 (214)
470 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.033 7.2E-07 48.6 3.6 31 35-67 26-56 (157)
471 cd03231 ABC_CcmA_heme_exporter 94.6 0.033 7.1E-07 50.9 3.6 28 36-65 28-55 (201)
472 PRK13543 cytochrome c biogenes 94.6 0.031 6.7E-07 51.6 3.5 29 36-66 39-67 (214)
473 TIGR02315 ABC_phnC phosphonate 94.6 0.029 6.2E-07 52.8 3.3 23 36-58 30-52 (243)
474 cd03254 ABCC_Glucan_exporter_l 94.6 0.032 6.9E-07 52.0 3.6 29 36-66 31-59 (229)
475 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.031 6.8E-07 51.2 3.5 29 36-66 36-64 (207)
476 PRK13651 cobalt transporter AT 94.6 0.03 6.6E-07 54.8 3.5 29 36-66 35-63 (305)
477 COG3523 IcmF Type VI protein s 94.6 0.11 2.3E-06 59.0 8.2 82 136-220 174-273 (1188)
478 PF13207 AAA_17: AAA domain; P 94.6 0.027 5.9E-07 46.6 2.7 22 36-57 1-22 (121)
479 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.6 0.031 6.8E-07 52.4 3.4 29 36-66 31-59 (238)
480 PRK15177 Vi polysaccharide exp 94.6 0.033 7.2E-07 51.4 3.5 30 36-67 15-44 (213)
481 COG1120 FepC ABC-type cobalami 94.5 0.032 7E-07 52.7 3.4 28 36-65 30-57 (258)
482 cd03222 ABC_RNaseL_inhibitor T 94.5 0.027 5.8E-07 50.5 2.7 24 35-58 26-49 (177)
483 cd03268 ABC_BcrA_bacitracin_re 94.5 0.032 6.9E-07 51.2 3.3 22 36-57 28-49 (208)
484 cd03219 ABC_Mj1267_LivG_branch 94.5 0.033 7.2E-07 52.1 3.5 22 36-57 28-49 (236)
485 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.032 7E-07 52.5 3.3 31 36-68 32-62 (254)
486 cd03232 ABC_PDR_domain2 The pl 94.5 0.035 7.6E-07 50.3 3.5 23 36-58 35-57 (192)
487 cd01849 YlqF_related_GTPase Yl 94.5 0.069 1.5E-06 46.5 5.3 43 174-218 1-44 (155)
488 cd03256 ABC_PhnC_transporter A 94.5 0.033 7.1E-07 52.3 3.4 23 36-58 29-51 (241)
489 cd03257 ABC_NikE_OppD_transpor 94.5 0.034 7.4E-07 51.7 3.5 23 36-58 33-55 (228)
490 cd03301 ABC_MalK_N The N-termi 94.5 0.034 7.3E-07 51.2 3.4 23 36-58 28-50 (213)
491 cd03217 ABC_FeS_Assembly ABC-t 94.5 0.039 8.4E-07 50.4 3.7 22 36-57 28-49 (200)
492 cd03230 ABC_DR_subfamily_A Thi 94.5 0.036 7.8E-07 49.3 3.4 23 36-58 28-50 (173)
493 PRK11124 artP arginine transpo 94.5 0.033 7.2E-07 52.4 3.3 23 36-58 30-52 (242)
494 TIGR02211 LolD_lipo_ex lipopro 94.4 0.037 8.1E-07 51.2 3.6 23 36-58 33-55 (221)
495 PRK10895 lipopolysaccharide AB 94.4 0.035 7.6E-07 52.2 3.4 23 36-58 31-53 (241)
496 cd03235 ABC_Metallic_Cations A 94.4 0.035 7.7E-07 51.1 3.4 23 36-58 27-49 (213)
497 PRK14250 phosphate ABC transpo 94.4 0.035 7.6E-07 52.2 3.4 30 36-67 31-60 (241)
498 TIGR01978 sufC FeS assembly AT 94.4 0.039 8.5E-07 51.8 3.8 22 36-57 28-49 (243)
499 cd03223 ABCD_peroxisomal_ALDP 94.4 0.041 8.8E-07 48.7 3.6 23 36-58 29-51 (166)
500 PRK13539 cytochrome c biogenes 94.4 0.04 8.7E-07 50.6 3.6 23 36-58 30-52 (207)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2e-73 Score=594.65 Aligned_cols=434 Identities=45% Similarity=0.690 Sum_probs=411.9
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
|+.++|++|++|++|+.++. +.++.+|+|+|||.||+||||++|+++|++|+|||.|+|||+|.+++|.+..
T Consensus 4 ~~~li~~vn~lqd~~~~l~~--------~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~ 75 (657)
T KOG0446|consen 4 MRLLIPLSNPLQDKLEILGS--------SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVA 75 (657)
T ss_pred hhhccccchHHHHHHHHhcC--------CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeeccccc
Confidence 78999999999999999983 2356999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeec-cCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchH
Q 013120 81 EGSREYAEFL-HIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV 159 (449)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~ 159 (449)
.+..+|++|. |.++..+.||++++++|..++++..|.++++|+.+|.+++++|+++++|+||+||+++++..+||+++.
T Consensus 76 ~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~ 155 (657)
T KOG0446|consen 76 GGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIE 155 (657)
T ss_pred CCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHH
Confidence 8889999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEE
Q 013120 160 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIG 239 (449)
Q Consensus 160 ~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 239 (449)
.++++|++.|+.++++||++|+++|.|+++++++++++++||.|.|||+|+||+|+++.|++....+.|..+++++||++
T Consensus 156 ~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~ 235 (657)
T KOG0446|consen 156 EEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVG 235 (657)
T ss_pred HHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 013120 240 VVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSR 319 (449)
Q Consensus 240 v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~ 319 (449)
|+||++++++...++.++...|..||.+++.|..+.+++|+++|.+.|...|..||++++|.+...|+..+.+.++++.+
T Consensus 236 vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~ 315 (657)
T KOG0446|consen 236 VVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNR 315 (657)
T ss_pred eeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccC---C-----CCCchhHhHHhhhHHHHhhccCccccCCHHHHHHHHH
Q 013120 320 LGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGV---R-----PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLIT 391 (449)
Q Consensus 320 lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~---~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~ 391 (449)
+|. .++.......++.+...|+..+...+.|. + .||+|++++|+..|...+.+++|.+.+...++++++.
T Consensus 316 ~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~ 393 (657)
T KOG0446|consen 316 IGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVS 393 (657)
T ss_pred hcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHH
Confidence 996 22222333457778888888888888876 2 4789999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhccC
Q 013120 392 EADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISET 444 (449)
Q Consensus 392 ~~~g~~p~~~~p~~~f~~li~~~~~~~~~P~~~~~~~v~~~l~~~v~~~~~~~ 444 (449)
|++|.+|++|.|+.+|+.+++.+|+.+++|+.+||+.|+++|.+++++++.++
T Consensus 394 ~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~ 446 (657)
T KOG0446|consen 394 EASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT 446 (657)
T ss_pred hccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999875
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.3e-47 Score=353.81 Aligned_cols=239 Identities=65% Similarity=0.981 Sum_probs=222.3
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
||.|++++|+++++++.+|... .+++|+|+|||++|+||||+||+|+|..++|++.|.|||+|+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~--------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~- 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS- 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC-
Confidence 8999999999999998888521 2589999999999999999999999999999999999999999999874
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHH
Q 013120 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~ 160 (449)
.++|+.+.+..++.+.+++++++.|.++++...|.+++||+++|.++|++|+.++++||||||+...+..+|+.++..
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~ 149 (240)
T smart00053 72 --STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE 149 (240)
T ss_pred --CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH
Confidence 367888888888899999999999999999998989999999999999999999999999999988776677777889
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEE
Q 013120 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 161 ~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
.+++++..|+++++.|||+|.+++.|+.+++++++++.+++.+.|+++|+||+|.+++++++.++++|+.+++++|||+|
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v 229 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGV 229 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEE
Confidence 99999999999999899999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EeCChhhhhc
Q 013120 241 VNRSQADINK 250 (449)
Q Consensus 241 ~~~s~~~~~~ 250 (449)
+||++.|++.
T Consensus 230 ~nr~~~d~~~ 239 (240)
T smart00053 230 VNRSQKDIEG 239 (240)
T ss_pred ECCChHHhhc
Confidence 9999998753
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=2.4e-37 Score=300.58 Aligned_cols=221 Identities=33% Similarity=0.541 Sum_probs=199.6
Q ss_pred HHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHH
Q 013120 223 ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGI 302 (449)
Q Consensus 223 ~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l 302 (449)
.+++.|+.++|++||++|+|||++|+....++.+++..|..||.++++|+...+++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccCCC---------CCchhHhHHhhhHHHHhh
Q 013120 303 QSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRP---------GGDKIYYVFDNQLPAALK 373 (449)
Q Consensus 303 ~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~---------~~~~~~~~f~~~~~~~~~ 373 (449)
+.+|++.+.+++.+|++||++++.+..+++.+|++++++|++.+.++++|.|. +|+++.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999998666778888999999999999999999986 478999999999999999
Q ss_pred ccCccccCCHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013120 374 RLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISE 443 (449)
Q Consensus 374 ~~~~~~~~~~~~~~~~i~~~~g~~p~~~~p~~~f~~li~~~~~~~~~P~~~~~~~v~~~l~~~v~~~~~~ 443 (449)
++++...+++++|+++|++++|+++++|+|+.+|+.||++++++|++||.+|++.|+++|.+++.+++..
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~ 231 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEK 231 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcch
Confidence 9998888999999999999999999999999999999999999999999999999999999999998875
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=273.74 Aligned_cols=400 Identities=27% Similarity=0.379 Sum_probs=281.1
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCC----cccCChHHHHH
Q 013120 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPR----KRFTDFAAVRK 105 (449)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 105 (449)
..+||+|||||+|||||+|+|+.+....+||+|+| ..||.|+-+.|..+ +-..+.|.+... .+..|+.+++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEG---PyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEG---PHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccC---cchhhhhccccccccccchhHHHHHHH
Confidence 35899999999999999999999999999999998 69999999888543 333444544332 23458889999
Q ss_pred HHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC
Q 013120 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ 185 (449)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~ 185 (449)
+++-.+......++.+|+.+|.+.+.+|+.+.+.|||+||++...+.+.-.+..+.+-.|.+.|+++|++||||+-+.+.
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 99887777666789999999999999999999999999999998888777778888999999999999999999999998
Q ss_pred cccchHHHHHHHHhCCCCCceEEEeccccccCCC----CcHHHHHcCcccccC-CCeEEEEeCChhhhhccCCHHHHHHH
Q 013120 186 DLATSDAIKISREVDPTGERTFGVLTKIDLMDKG----TDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARRR 260 (449)
Q Consensus 186 d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (449)
|...+-.-.++.++||.|.|||+|+||.|+..+. ..+.+++.|+.++.+ +|||+|+.-.+ +...++.+-+..
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG---nssdSIdaIR~Y 538 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG---NSSESIEAIREY 538 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC---CcchhHHHHHHH
Confidence 9888888889999999999999999999998652 236789999988877 89999876432 122355566788
Q ss_pred HHhHhccCcccchh---hhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCchh----hH
Q 013120 261 EREYFSTTPEYKHL---AQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKP-IAADAGG----KL 332 (449)
Q Consensus 261 e~~ff~~~~~~~~~---~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~-~~~~~~~----~~ 332 (449)
|.+||.+...+..- +..+.+.+|.-..+..++..+++.+..........--.++.|++.-=+. +..+.++ .+
T Consensus 539 EE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNLEtEWKNnfpRlRel~RdELfdKAk 618 (980)
T KOG0447|consen 539 EEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNLETEWKNNYPRLRELDRNELFEKAK 618 (980)
T ss_pred HHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHhhhcChHHHHHHhh
Confidence 99999986554322 4567788888888999999998888776666665555566666533211 1111111 00
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC--Cch-hHhHHhhhHHHHhhccCccccCCHHHHHHHHHhcCCCCCCCCCChHHHHH
Q 013120 333 YTIMEICRLFDQIYKEHLDGVRPG--GDK-IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRR 409 (449)
Q Consensus 333 ~~l~~~~~~f~~~~~~~i~g~~~~--~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~p~~~~p~~~f~~ 409 (449)
..++.-+-..++..-...+..... ..+ ....|+..+..+...++-..+.+.-+|+. -++.+..-|. ..-|.+++.
T Consensus 619 gEILDEvi~lsqv~~k~w~e~l~~~~~e~vs~~~~~~~~lpaA~~~~sg~FnttvdIkl-k~w~DKqL~~-k~ve~~w~t 696 (980)
T KOG0447|consen 619 NEILDEVISLSQVTPKHWEEILQQSLWERVSTHVIENIYLPAAQTMNSGTFNTTVDIKL-KQWTDKQLPN-KAVEVAWET 696 (980)
T ss_pred hhHHHHHHhhhhcChhhHHHHHHHHHHHHhhhhhhhhccchhhhcccccccceeehhhh-hhhhhhhcch-hhhHHHHHH
Confidence 011111111111111111111100 000 11233333333322233222222223322 1223322232 344779999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 013120 410 LIESSVVTIRGPAEAAVDAVHALLKELVH 438 (449)
Q Consensus 410 li~~~~~~~~~P~~~~~~~v~~~l~~~v~ 438 (449)
|-+.+.+.+.+|+.+-.|.||+.|++.|.
T Consensus 697 l~e~f~r~~~~~~~k~hd~ifd~lkeav~ 725 (980)
T KOG0447|consen 697 LQEEFSRFMTEPKGKEHDDIFDKLKEAVK 725 (980)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999883
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.91 E-value=1.1e-23 Score=187.83 Aligned_cols=167 Identities=36% Similarity=0.522 Sum_probs=133.5
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceee-ccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEF-LHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
|+|+|.+|||||||||||+|.+++|++.++||++|+.++....+.....+... .......+.++.++...+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999999999999999999999987655432111111 11225667889999999988887777
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
+....++...+.+....+...+++||||||+.+..... .+++.+|+.++|++|+|+ +++..+...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~vi~V~-~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADVVIFVV-DANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEEEEEEE-ETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCEEEEEe-ccCcccchHHHHHH
Confidence 76778888888999999999999999999998743321 388999999999887776 56667888888889
Q ss_pred HHHhCCCCCceEEEeccc
Q 013120 196 SREVDPTGERTFGVLTKI 213 (449)
Q Consensus 196 ~~~~~~~~~rti~VltK~ 213 (449)
.+..++...++++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=182.64 Aligned_cols=205 Identities=18% Similarity=0.350 Sum_probs=147.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-..|++||.||+|||||+|+|+|.++ .++|+.| +++| .+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~---QTTR---------------------------------~~ 44 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKP---QTTR---------------------------------NR 44 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCc---chhh---------------------------------hh
Confidence 34799999999999999999999998 7888888 2221 33
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
+.| |...+..+++||||||+...... +.+.+.+.+.+.+..+|+|+|+|++ ...+...+ .
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk~~-----l~~~m~~~a~~sl~dvDlilfvvd~-~~~~~~~d-~ 104 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPKHA-----LGELMNKAARSALKDVDLILFVVDA-DEGWGPGD-E 104 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcchH-----HHHHHHHHHHHHhccCcEEEEEEec-cccCCccH-H
Confidence 334 55566788999999999986443 8888888899999999999888764 44444333 3
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCe---EEEEeCChhhhhccCCHHHHHHHHHhHhccCcc
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPW---IGVVNRSQADINKNVDMIAARRREREYFSTTPE 270 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~---~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~ 270 (449)
.++..+.....|.++++||+|...+...+..+.+. .....+| +++++..+.+++.+...+.....|.++|+....
T Consensus 105 ~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~--~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 105 FILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAF--LKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred HHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHH--HHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 35555655568999999999999877644444332 2223344 444445556677777778888888888888877
Q ss_pred cchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHH
Q 013120 271 YKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQS 304 (449)
Q Consensus 271 ~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~ 304 (449)
+++..+++-+ .+.+++.+....+++||+-..
T Consensus 183 itD~~~rf~~---aEiiREk~~~~l~eElPhsv~ 213 (298)
T COG1159 183 ITDRPERFLA---AEIIREKLLLLLREELPHSVA 213 (298)
T ss_pred ccCChHHHHH---HHHHHHHHHHhcccccCceEE
Confidence 7777665533 344567777778888887543
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=9e-19 Score=168.29 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=128.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.|+++|.+|+|||||+|+|+|..+-.++.- .+|+.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~----------------------------------------- 40 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS----------------------------------------- 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-----------------------------------------
Confidence 689999999999999999999876222211 12222210
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+...+..++.|+||||+..... .....+...+..++..+|++++++++.... ..+ ..
T Consensus 41 --------------~i~~~~~~qii~vDTPG~~~~~~-----~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~--~~~-~~ 98 (270)
T TIGR00436 41 --------------GIHTTGASQIIFIDTPGFHEKKH-----SLNRLMMKEARSAIGGVDLILFVVDSDQWN--GDG-EF 98 (270)
T ss_pred --------------EEEEcCCcEEEEEECcCCCCCcc-----hHHHHHHHHHHHHHhhCCEEEEEEECCCCC--chH-HH
Confidence 12222334689999999986421 244445556788899999999998765422 222 33
Q ss_pred HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccC-CCeEEEEeCChhhhhccCCHHHHHHHHHhHhccCcccch
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKH 273 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~ 273 (449)
+...+...+.|+++|+||+|+..+.. ..+.+........ ..++.+++..+.+++.+...+.....+.+++......++
T Consensus 99 i~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 99 VLTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 44555556789999999999974322 2222111111111 257888888888888777776666666666555554554
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHhhhHHHHHH
Q 013120 274 LAQRMGSEHLAKMLSKHLETVIKSRIPGIQSL 305 (449)
Q Consensus 274 ~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~ 305 (449)
..++ ....+.+++.+..++.+++|+-...
T Consensus 178 ~~~~---~~~~e~ire~~~~~~~~e~p~~~~~ 206 (270)
T TIGR00436 178 QPDR---FKISEIIREKIIRYTKEEIPHSVRV 206 (270)
T ss_pred CCHH---HHHHHHHHHHHHHhcccccCceEEE
Confidence 4433 2445567777888888899875543
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.76 E-value=4e-17 Score=161.23 Aligned_cols=179 Identities=18% Similarity=0.279 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCC
Q 013120 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS 83 (449)
Q Consensus 4 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~ 83 (449)
|..+...|.++.+.... ..+..+--.+|++|.||+|||||||+|+|++. .+||..|
T Consensus 194 l~~~~~~l~~ll~~~~~-------g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~------------ 249 (454)
T COG0486 194 LEELIAELDELLATAKQ-------GKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA------------ 249 (454)
T ss_pred HHHHHHHHHHHHHhhhh-------hhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC------------
Confidence 34445555555544333 12234556899999999999999999999998 8999888
Q ss_pred ccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHH
Q 013120 84 REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIE 163 (449)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~ 163 (449)
|+|+++-...+.+ +..++.|+||.|+...... ++..--
T Consensus 250 --------------------------------GTTRDviee~i~i-----~G~pv~l~DTAGiRet~d~-----VE~iGI 287 (454)
T COG0486 250 --------------------------------GTTRDVIEEDINL-----NGIPVRLVDTAGIRETDDV-----VERIGI 287 (454)
T ss_pred --------------------------------CCccceEEEEEEE-----CCEEEEEEecCCcccCccH-----HHHHHH
Confidence 7777766666555 5678999999999964322 444444
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeC
Q 013120 164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNR 243 (449)
Q Consensus 164 ~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (449)
+-++..+++||.|+++++... .+ ......+.. ..+.++++++|+||.|+..+.... . + ....+..++.++.+
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~-~~-~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-~-~---~~~~~~~~i~iSa~ 359 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQ-PL-DKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE-S-E---KLANGDAIISISAK 359 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCC-CC-chhhHHHHH-hcccCCCEEEEEechhcccccccc-h-h---hccCCCceEEEEec
Confidence 558888999999988886543 22 233333333 456689999999999999764311 1 0 22334467888888
Q ss_pred ChhhhhccCCHHH
Q 013120 244 SQADINKNVDMIA 256 (449)
Q Consensus 244 s~~~~~~~~~~~~ 256 (449)
.+++++.+...+.
T Consensus 360 t~~Gl~~L~~~i~ 372 (454)
T COG0486 360 TGEGLDALREAIK 372 (454)
T ss_pred CccCHHHHHHHHH
Confidence 8877766554443
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=3.4e-19 Score=154.87 Aligned_cols=146 Identities=27% Similarity=0.401 Sum_probs=94.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|.+|+|||||+|+|+|... .+ +.+|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v-----~n~p-------------------------------------------- 31 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KV-----GNWP-------------------------------------------- 31 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EE-----EEST--------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-ee-----cCCC--------------------------------------------
Confidence 699999999999999999999873 22 2222
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
|.+...... . +. -....+.||||||+.+..... .. +.++++|+ .++|++|+|+++.+ .+..+
T Consensus 32 G~Tv~~~~g--~--~~-~~~~~~~lvDlPG~ysl~~~s----~e---e~v~~~~l~~~~~D~ii~VvDa~~----l~r~l 95 (156)
T PF02421_consen 32 GTTVEKKEG--I--FK-LGDQQVELVDLPGIYSLSSKS----EE---ERVARDYLLSEKPDLIIVVVDATN----LERNL 95 (156)
T ss_dssp TSSSEEEEE--E--EE-ETTEEEEEEE----SSSSSSS----HH---HHHHHHHHHHTSSSEEEEEEEGGG----HHHHH
T ss_pred CCCeeeeeE--E--EE-ecCceEEEEECCCcccCCCCC----cH---HHHHHHHHhhcCCCEEEEECCCCC----HHHHH
Confidence 222111010 1 11 123579999999998764331 22 56678887 58999999887654 45667
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcH--HHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDA--ADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
.++.++...+.|+++|+||+|.+.+.... .+.+. ..++.+.+.+++++.+++++
T Consensus 96 ~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 96 YLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLS---ERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH---HHHTS-EEEEBTTTTBTHHH
T ss_pred HHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHH---HHhCCCEEEEEeCCCcCHHH
Confidence 88888888899999999999998654321 12222 34566777777777766554
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=1.6e-17 Score=161.52 Aligned_cols=205 Identities=18% Similarity=0.258 Sum_probs=125.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccc-cccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT-RRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..|+|+|.+|||||||+|+|+|.++..++..+.| +..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~------------------------------------------ 43 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR------------------------------------------ 43 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc------------------------------------------
Confidence 4699999999999999999999886333222211 111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
..| +...+..+++++||||+..... .....+...+..++.++|+++++++... .+ .....
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D~il~vvd~~~-~~-~~~~~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVDLVLFVVDADE-KI-GPGDE 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-ChhHH
Confidence 001 2222335799999999986432 2445556667888999999999887554 22 23334
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCccccc-CCCeEEEEeCChhhhhccCCHHHHHHHHHhHhccCcccc
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYK 272 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~ 272 (449)
.++..+...+.+.++|+||+|+........+.++...... ...++.+++..+.+++.+...+.....+.+++......+
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~t 183 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQIT 183 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4556665557899999999999844332222222111111 234566677766776666665555555544444433333
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHhhhHHHHH
Q 013120 273 HLAQRMGSEHLAKMLSKHLETVIKSRIPGIQS 304 (449)
Q Consensus 273 ~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~ 304 (449)
+...+ ....+.+++.+..++.+++|+-.+
T Consensus 184 d~~~r---~~~~EiiRe~~~~~l~~e~p~~~~ 212 (292)
T PRK00089 184 DRPER---FLAAEIIREKLLRLLGDELPYSVA 212 (292)
T ss_pred CCCHH---HHHHHHHHHHHHhhCCccCCceEE
Confidence 33322 234555677788888888887543
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.71 E-value=9.4e-17 Score=158.76 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=131.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|.+|+|||||+|+|+|..+ ..++..|
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~-------------------------------------------- 84 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKV-------------------------------------------- 84 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCce-----eeccCCC--------------------------------------------
Confidence 799999999999999999999876 2222222
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
+++..+... +...+..++.||||||+..... .+.......+..++..+|++|+++++.. .+.. ....+
T Consensus 85 ~tTr~~~~~-----~~~~~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~-~~~~i 152 (339)
T PRK15494 85 QTTRSIITG-----IITLKDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDD-ITHNI 152 (339)
T ss_pred CCccCcEEE-----EEEeCCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCH-HHHHH
Confidence 111110000 1111234689999999975322 1444445556677899999999887433 2322 22334
Q ss_pred HHHhCCCCCceEEEeccccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhHhccCcccchh
Q 013120 196 SREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHL 274 (449)
Q Consensus 196 ~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~ 274 (449)
+..+...+.+.++|+||+|+.+... +..+.+.. ......++.+++.++.+++.+...+.....|.++++....+++.
T Consensus 153 l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 153 LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 5555555678899999999864311 12222211 11123578888888889988888888888888888887777776
Q ss_pred hhhcchHHHHHHHHHHHHHHHHhhhHHHHHH
Q 013120 275 AQRMGSEHLAKMLSKHLETVIKSRIPGIQSL 305 (449)
Q Consensus 275 ~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~ 305 (449)
..++ ...+.+++.+..++.+++|+-...
T Consensus 231 ~~~~---~~~eiiRe~~~~~~~~EiP~~~~v 258 (339)
T PRK15494 231 PMRF---IAAEITREQLFLNLQKELPYKLTV 258 (339)
T ss_pred CHHH---HHHHHHHHHHHhhCCcccCceEEE
Confidence 5543 334556778888889999976543
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=155.24 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=111.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
|.|++||.+|+|||||+|+|+|... .++...|-..+ ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTR------------------------------------Dr~ 42 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTR------------------------------------DRI 42 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCcc------------------------------------CCc
Confidence 8999999999999999999999886 56665552221 111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+ .... ....+.+|||+|+.... ++.+..++...+...+..||+|||+|+.- . ..+.....
T Consensus 43 y~------------~~~~-~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilfvVD~~-~-Git~~D~~ 103 (444)
T COG1160 43 YG------------DAEW-LGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILFVVDGR-E-GITPADEE 103 (444)
T ss_pred cc------------eeEE-cCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEEEEeCC-C-CCCHHHHH
Confidence 11 1111 12348999999999743 23488899999999999999999998643 2 33566677
Q ss_pred HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCC-eEEEEeCChhhhhccCCHHHHH
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
+++.+...++|+|+|+||+|.........++ +.+++| .++++.-.+.++.++.+.....
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----yslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHH-----HhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 8888887789999999999988444333332 455655 4556665566666655544433
No 13
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=1.9e-14 Score=147.51 Aligned_cols=211 Identities=16% Similarity=0.203 Sum_probs=114.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccce---eecc------------CCC-----
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYA---EFLH------------IPR----- 94 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~---~~~~------------~~~----- 94 (449)
|.++|+|..|+|||||+|+|+|..++|++...+|..|+.++.........-+. .|.. ...
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Confidence 89999999999999999999999999999999999999776543222111110 0000 000
Q ss_pred --cccCChHHHHHHHHHH----------------------HhhhhCC-CCCccc---------ccEEEEEecCC-----C
Q 013120 95 --KRFTDFAAVRKEIQDE----------------------TDRETGR-TKQISS---------VPIHLSIYSPN-----V 135 (449)
Q Consensus 95 --~~~~~~~~~~~~i~~~----------------------~~~~~g~-~~~~s~---------~~i~l~i~~~~-----~ 135 (449)
....+...+...+.+. .-++... +..|.- .+|.++..... .
T Consensus 150 ~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~ 229 (741)
T PRK09866 150 VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP 229 (741)
T ss_pred HHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccccc
Confidence 0001122222111110 0000000 011110 12223322222 3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCC--CceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG--ERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~--~rti~VltK~ 213 (449)
.+++||||||+.+... ..+..+....+..+|+|+++|+... .. ......+++.+...+ .++++|+||+
T Consensus 230 ~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eADvVLFVVDat~-~~-s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARASAVLAVLDYTQ-LK-SISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccc--------hHHHHHHHHHHhhCCEEEEEEeCCC-CC-ChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 6799999999987421 1123344458999999988887433 22 233344666666555 4999999999
Q ss_pred cccCCCCc----HHHHHcCcccccC---CCeEEEEeCChhhhhccCCHH
Q 013120 214 DLMDKGTD----AADILEGKSYRLK---FPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 214 D~~~~~~~----~~~~l~~~~~~l~---~g~~~v~~~s~~~~~~~~~~~ 255 (449)
|..++.++ ..+++........ -..++|+.+.+.+++.+.+.+
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI 348 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHEL 348 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Confidence 99754432 2232221100112 235667776666655544433
No 14
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=144.28 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCC-CCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 2 ENLISLVNKIQRACTALGDHGE-ASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 2 ~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
+++.++++++.+-+.-++.... ...+|.+..++|+|+|+|.||+|||||+++|++.+. -+-.+
T Consensus 135 GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~Y---------- 198 (346)
T COG1084 135 GRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPY---------- 198 (346)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCC----------
Confidence 4677888888888777775443 467888889999999999999999999999999763 11122
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHH
Q 013120 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~ 160 (449)
.|+...|.+.....+...+++|||||+-+.+.. -..
T Consensus 199 ---------------------------------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-----ErN 234 (346)
T COG1084 199 ---------------------------------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-----ERN 234 (346)
T ss_pred ---------------------------------------CccccceeEeeeecCCceEEEecCCcccCCChH-----Hhc
Confidence 245555667677777778999999999886643 333
Q ss_pred HHHHHHHHHhcC-CCeEEEEEecCCC-cccchHHHHHHHHhCCC-CCceEEEeccccccCCC
Q 013120 161 DIENMVRSYIEK-PNCIILAISPANQ-DLATSDAIKISREVDPT-GERTFGVLTKIDLMDKG 219 (449)
Q Consensus 161 ~~~~~~~~yi~~-~d~iIl~v~~a~~-d~~~~~~~~l~~~~~~~-~~rti~VltK~D~~~~~ 219 (449)
.++..+-..+++ .++|++++++... .+.-.+-..|..++.+. ..+++.|+||+|..+.+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 455556666666 4567777776543 23334445577777765 45899999999999654
No 15
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=1.8e-14 Score=147.70 Aligned_cols=156 Identities=22% Similarity=0.255 Sum_probs=96.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+-++|+++|.+|+|||||+|+|+|.+.. .++..|
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-----~v~~~~----------------------------------------- 247 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-----IVTDIA----------------------------------------- 247 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-----ccCCCC-----------------------------------------
Confidence 4478999999999999999999997652 222222
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|++..+. ...+.. +...+.++||||+.+... .+...--..+..++.++|++|+|++..+.. +.+.
T Consensus 248 ---gtT~d~~----~~~i~~-~g~~i~l~DT~G~~~~~~-----~ie~~gi~~~~~~~~~aD~il~VvD~s~~~--s~~~ 312 (449)
T PRK05291 248 ---GTTRDVI----EEHINL-DGIPLRLIDTAGIRETDD-----EVEKIGIERSREAIEEADLVLLVLDASEPL--TEED 312 (449)
T ss_pred ---CcccccE----EEEEEE-CCeEEEEEeCCCCCCCcc-----HHHHHHHHHHHHHHHhCCEEEEEecCCCCC--ChhH
Confidence 1111111 111111 234689999999865211 122221233677899999999988754322 2233
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (449)
..+... ..+.++++|+||+|+....... ......++.++..++.+++.+...+....
T Consensus 313 ~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 313 DEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 344443 3468999999999997543211 12234578888888888877766655443
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.63 E-value=4.8e-15 Score=146.90 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=98.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...|+|+++|.+|+|||||+|+|+|..+...+...+|+-|+.-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 36799999999999999999999998754444334455443221
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch-
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~- 190 (449)
+..++...+.|+||||+.+.. |.+..+.++. +..++.++|++|+|++..+.+....
T Consensus 231 ------------------i~~~~~~~i~l~DT~G~~~~l----~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 231 ------------------LDLPDGGEVLLTDTVGFIRDL----PHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred ------------------EEeCCCceEEEEecCcccccC----CHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHH
Confidence 222334578999999996531 3335555554 5667999999999987654332111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 191 -DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 191 -~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
....+++.+...+.++++|+||+|+.+.. .... ... ....++.+++..+.+++.+
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~~-~~~----~~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIER-LEE----GYPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCChH-hHHH-HHh----CCCCEEEEEccCCCCHHHH
Confidence 12345566655578999999999997532 1211 111 0123566777666655443
No 17
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-15 Score=141.85 Aligned_cols=207 Identities=15% Similarity=0.239 Sum_probs=127.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-+|+|+|.+|+|||||.|.++|.++.|++.-+ +||+-
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~------------------------------------------ 110 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR------------------------------------------ 110 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeee------------------------------------------
Confidence 48999999999999999999999996655432 22221
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC-cccchHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDA 192 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~-d~~~~~~ 192 (449)
+.| +.+.+..++.|+||||+......-+. .+...+.+-.+..+.+||+++++++..+. ...+...
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~-~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~v 176 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHRRH-HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRV 176 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhhhH-HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHH
Confidence 123 55666778999999999875533111 12222233367779999999888886643 2334556
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcH---HHHHcCcc--------------------cccCCCe------EEEEeC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDA---ADILEGKS--------------------YRLKFPW------IGVVNR 243 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~---~~~l~~~~--------------------~~l~~g~------~~v~~~ 243 (449)
+..++.+. ..+.|+|+||+|...+...+ .+.+.+.. .+-..|| |.|+..
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL 254 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSAL 254 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecc
Confidence 66667665 57899999999988665432 12221110 1122355 566777
Q ss_pred ChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHH
Q 013120 244 SQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGI 302 (449)
Q Consensus 244 s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l 302 (449)
++.|++++..++-..+...+|.+.....+. ...-.-..+.+.+.|.+|+.+++|+-
T Consensus 255 ~G~GikdlkqyLmsqa~~gpW~y~a~i~T~---~s~e~l~~e~VReklLd~~pqEVPY~ 310 (379)
T KOG1423|consen 255 YGEGIKDLKQYLMSQAPPGPWKYPADIVTE---ESPEFLCSESVREKLLDHLPQEVPYN 310 (379)
T ss_pred cccCHHHHHHHHHhcCCCCCCCCCcccccc---cCHHHHHHHHHHHHHHhhCccccCcc
Confidence 778887766666555544444433222211 11122334455566777777777753
No 18
>PRK11058 GTPase HflX; Provisional
Probab=99.60 E-value=1.4e-14 Score=146.88 Aligned_cols=127 Identities=20% Similarity=0.325 Sum_probs=84.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+|.|+++|.+|||||||+|+|+|.++...+.-.+|+-|+.-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 6799999999999999999999998764222223444442211
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~-- 190 (449)
+..++...+.|+||||+.+. .|.+..+.+.. +..++.++|++|+|++..+......
T Consensus 239 -----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 239 -----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIE 296 (426)
T ss_pred -----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence 11122335789999999653 13334455544 5677899999999988655332211
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
....++.++...+.++++|+||+|+...
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 1234566666567899999999999753
No 19
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=6.6e-14 Score=142.75 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
.+-.+|+++|.+|+|||||+|+|+|.+. ..++..|
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~p---------------------------------------- 235 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIK---------------------------------------- 235 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC----------------------------------------
Confidence 3557999999999999999999999764 2233333
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
|++..+.... +.. +...+.++||||+...... +...--..+..|++++|++|+|++..+.. +.+
T Consensus 236 ----gtTrd~~~~~----i~~-~g~~v~l~DTaG~~~~~~~-----ie~~gi~~~~~~~~~aD~il~V~D~s~~~--s~~ 299 (442)
T TIGR00450 236 ----GTTRDVVEGD----FEL-NGILIKLLDTAGIREHADF-----VERLGIEKSFKAIKQADLVIYVLDASQPL--TKD 299 (442)
T ss_pred ----CcEEEEEEEE----EEE-CCEEEEEeeCCCcccchhH-----HHHHHHHHHHHHHhhCCEEEEEEECCCCC--Chh
Confidence 1111111111 111 2245789999999753211 22211234678999999999998755422 222
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
.. +...+...+.++++|+||+|+... +...+. ..++..++.++..+ .+++.++..+.
T Consensus 300 ~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 300 DF-LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred HH-HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec-CCHHHHHHHHH
Confidence 22 444555457899999999999654 221211 12334567777665 34444444433
No 20
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.57 E-value=7e-14 Score=143.99 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=106.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|+||+|||||+|+|+|... .+...|-+.. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~VgNwpGvTV------------------------------------Ekk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVGNWPGVTV------------------------------------EKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eecCCCCeeE------------------------------------EEE
Confidence 4699999999999999999999862 3333442111 111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.| .+ ......+++||+||+.+-.....+ +.++++|+. ++|+||-+|++.| -...
T Consensus 42 eg----------~~---~~~~~~i~ivDLPG~YSL~~~S~D-------E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG----------KL---KYKGHEIEIVDLPGTYSLTAYSED-------EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE----------EE---EecCceEEEEeCCCcCCCCCCCch-------HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 12 11 112345899999999876644221 677899975 5799999988776 4567
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
+.+.-++-+.|.++++++|++|...+.....+.- .-...++.+.+.++.+.++++++.+..+
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~-~L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDIE-KLSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHH-HHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 7888888888999999999999987644222211 1135677888888888887776655433
No 21
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.57 E-value=3.3e-14 Score=125.17 Aligned_cols=122 Identities=21% Similarity=0.342 Sum_probs=80.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccc-cccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT-RRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.+|+++|.+|+|||||+|+|+|.++.+.+....| +..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR------------------------------------------ 41 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece------------------------------------------
Confidence 5799999999999999999999875332221111 100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
+. .+......++.++||||+...... ....+......++..+|.++++++.... ..+...
T Consensus 42 ------------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~--~~~~~~ 101 (168)
T cd04163 42 ------------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP--IGEGDE 101 (168)
T ss_pred ------------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc--cCchHH
Confidence 00 011122356899999999864322 2233455677889999999998876543 233334
Q ss_pred HHHHHhCCCCCceEEEeccccccCC
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+.+.+...+.+.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhcccc
Confidence 4555555557899999999999843
No 22
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=4.2e-14 Score=141.77 Aligned_cols=178 Identities=17% Similarity=0.155 Sum_probs=106.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+..|++||.+|||||||||+|++...-......+|+.|+.-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 458999999999999999999997631112223555553322
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC---Ccccch
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---QDLATS 190 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~---~d~~~~ 190 (449)
+...+...++|+||||+......+ ...... ..+++..+++++++++... .+.. .
T Consensus 201 ----------------v~~~~~~~i~~vDtPGi~~~a~~~-----~~Lg~~-~l~~i~radvlL~VVD~s~~~~~d~~-e 257 (390)
T PRK12298 201 ----------------VRVDDERSFVVADIPGLIEGASEG-----AGLGIR-FLKHLERCRVLLHLIDIAPIDGSDPV-E 257 (390)
T ss_pred ----------------EEeCCCcEEEEEeCCCccccccch-----hhHHHH-HHHHHHhCCEEEEEeccCcccccChH-H
Confidence 112223458999999998754321 111122 3357889999999987542 2221 2
Q ss_pred HHHHHHHHhCC-----CCCceEEEeccccccCCCCcHHHHHcCcc--cccCCCeEEEEeCChhhhhccCCHHHHHHHHHh
Q 013120 191 DAIKISREVDP-----TGERTFGVLTKIDLMDKGTDAADILEGKS--YRLKFPWIGVVNRSQADINKNVDMIAARRRERE 263 (449)
Q Consensus 191 ~~~~l~~~~~~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~--~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ 263 (449)
+...+.+++.. ...+.++|+||+|+.... ...+.++... ......++.++..+..+++.+...+.....+.+
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 22223343332 257999999999987543 2222222111 111124677888888888777777666666655
Q ss_pred HhccCcccch
Q 013120 264 YFSTTPEYKH 273 (449)
Q Consensus 264 ff~~~~~~~~ 273 (449)
+++....+++
T Consensus 337 ~~~~~~~~td 346 (390)
T PRK12298 337 REEAEEAEAP 346 (390)
T ss_pred ccCCcccccC
Confidence 5554444443
No 23
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=6.1e-14 Score=128.32 Aligned_cols=124 Identities=19% Similarity=0.327 Sum_probs=77.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+|+++|.+|+|||||+|+|+|...+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 2333321110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
..+ ....+++|||||+.+.... .+++...+...+......+|++|+|+. +.. + +.+..
T Consensus 44 --------------~~~---~~~~i~viDTPG~~d~~~~--~~~~~~~i~~~~~~~~~g~~~illVi~-~~~-~-t~~d~ 101 (196)
T cd01852 44 --------------AVW---DGRRVNVIDTPGLFDTSVS--PEQLSKEIVRCLSLSAPGPHAFLLVVP-LGR-F-TEEEE 101 (196)
T ss_pred --------------EEE---CCeEEEEEECcCCCCccCC--hHHHHHHHHHHHHhcCCCCEEEEEEEE-CCC-c-CHHHH
Confidence 001 2346899999999976431 222333333334444567898888775 433 3 33333
Q ss_pred HHHHHhCCC-----CCceEEEeccccccCCC
Q 013120 194 KISREVDPT-----GERTFGVLTKIDLMDKG 219 (449)
Q Consensus 194 ~l~~~~~~~-----~~rti~VltK~D~~~~~ 219 (449)
..++.+... ..++++|+|++|.+..+
T Consensus 102 ~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 102 QAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 334333221 36899999999988654
No 24
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=5.8e-14 Score=138.08 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-++.|++||.+|||||||||+|++...-......+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 3578999999999999999999986521111123455553221
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+...+...++++||||+......+ ..+.....++++.++++|+|++..+.+. ..+.
T Consensus 200 -----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s-~e~~ 255 (335)
T PRK12299 200 -----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDP-VEDY 255 (335)
T ss_pred -----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCC-HHHH
Confidence 112234568999999998754331 1123345567788999999988664331 1222
Q ss_pred HHHHHH---hCC--CCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCH
Q 013120 193 IKISRE---VDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (449)
Q Consensus 193 ~~l~~~---~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (449)
..+..+ +++ ...+.++|+||+|+.+......+.++.........++.+++.+..+++.+...
T Consensus 256 ~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~ 322 (335)
T PRK12299 256 KTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRA 322 (335)
T ss_pred HHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 223333 333 36799999999998754321111111111112345666666666555544433
No 25
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=5.8e-14 Score=124.77 Aligned_cols=127 Identities=30% Similarity=0.475 Sum_probs=87.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+|.|+++|..|+|||||||+|+|..-|.+- +..|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArt----SktP----------------------------------------- 57 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLART----SKTP----------------------------------------- 57 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeec----CCCC-----------------------------------------
Confidence 7889999999999999999999997644332 2233
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC-CC--eEEEEEecCCCcccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK-PN--CIILAISPANQDLAT 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~-~d--~iIl~v~~a~~d~~~ 189 (449)
|.|..+. .+.. ...+.|||+||+.-... +++..+.+..++..|++. ++ .+++++ ++...+ .
T Consensus 58 ---GrTq~iN-------ff~~-~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlli-D~r~~~-~ 121 (200)
T COG0218 58 ---GRTQLIN-------FFEV-DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLI-DARHPP-K 121 (200)
T ss_pred ---CccceeE-------EEEe-cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEE-ECCCCC-c
Confidence 2221110 1111 12388999999875443 345888999999999975 44 333333 444443 3
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCCC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (449)
....++...+...+.++++|+||+|.+..++
T Consensus 122 ~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 122 DLDREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 4455788888888999999999999998654
No 26
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.53 E-value=1.7e-13 Score=126.03 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=90.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...|.|+|+|.+|||||||+|+|+|..+.+.+....|..|...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 81 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR------------------------------------- 81 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE-------------------------------------
Confidence 3578999999999999999999999875333332233222110
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~-- 189 (449)
.+..++...+++|||||+.+.. +.......... ..++.++|+++++++..+.....
T Consensus 82 -----------------~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~-~~~~~~~d~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 82 -----------------RLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRST-LEEVAEADLLLHVVDASDPDYEEQI 139 (204)
T ss_pred -----------------EEEecCCceEEEeCCCccccCC----CHHHHHHHHHH-HHHHhcCCeEEEEEECCCCChhhHH
Confidence 1222233368999999986532 11222333332 34577899999988755432221
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhh
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (449)
.....+.+.+...+.++++|+||+|+....... ... ......++.+++..+.+++
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERL----EAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-HHh----hcCCCceEEEEcCCCCCHH
Confidence 122345555555578999999999997543211 111 1122345566665554443
No 27
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.53 E-value=5.6e-14 Score=124.64 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=75.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
|.|+|+|.+|+|||||+|+|++..+.......+|......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998765322111112111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+....+...++++|||||.... ..+...++..+|+++++++....+ ..+...
T Consensus 41 ------------~~~~~~~~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~il~v~d~~~~~--~~~~~~ 93 (168)
T cd01887 41 ------------EVPAEVLKIPGITFIDTPGHEAF-------------TNMRARGASLTDIAILVVAADDGV--MPQTIE 93 (168)
T ss_pred ------------EEecccCCcceEEEEeCCCcHHH-------------HHHHHHHHhhcCEEEEEEECCCCc--cHHHHH
Confidence 00010013457999999997542 345567788999999988765422 233333
Q ss_pred HHHHhCCCCCceEEEeccccccCC
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..+...+.+.++|+||+|+...
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccc
Confidence 444444457899999999998743
No 28
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.53 E-value=3.6e-14 Score=140.07 Aligned_cols=156 Identities=20% Similarity=0.293 Sum_probs=100.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+..+|+++|.||+|||||+|+|+|....=++. .|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-----~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-----IA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-----CC-----------------------------------------
Confidence 45799999999999999999999987522222 22
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|+++ +.|...+. .+...+.+|||.|+.+...-.. .++..--.-+...|..+|+++|+++ +...+ +.+.
T Consensus 211 ---GTTR----D~I~~~~e-~~~~~~~liDTAGiRrk~ki~e--~~E~~Sv~rt~~aI~~a~vvllviD-a~~~~-~~qD 278 (444)
T COG1160 211 ---GTTR----DSIDIEFE-RDGRKYVLIDTAGIRRKGKITE--SVEKYSVARTLKAIERADVVLLVID-ATEGI-SEQD 278 (444)
T ss_pred ---Cccc----cceeeeEE-ECCeEEEEEECCCCCccccccc--ceEEEeehhhHhHHhhcCEEEEEEE-CCCCc-hHHH
Confidence 3322 22222222 2445799999999987553311 1111111225677889999988876 44444 5566
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCc--ccccCCCeEEEEeCChh
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGK--SYRLKFPWIGVVNRSQA 246 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~ 246 (449)
.+++..+...|+..++|+||||++++.+...+..... .....++|..+.+.|+.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 7799999999999999999999998643222222111 12234567777766653
No 29
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.53 E-value=1e-13 Score=115.66 Aligned_cols=115 Identities=25% Similarity=0.322 Sum_probs=76.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
+|+|+|.+|+|||||+|+|+|......+.. .+|+.+..-..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~-------------------------------------- 42 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQF-------------------------------------- 42 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEE--------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeee--------------------------------------
Confidence 689999999999999999999765444443 35555521110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.-....+.|+||||+......+ ........+.+.+..+|++|+|++ ++. ........
T Consensus 43 -----------------~~~~~~~~~vDtpG~~~~~~~~----~~~~~~~~~~~~~~~~d~ii~vv~-~~~-~~~~~~~~ 99 (116)
T PF01926_consen 43 -----------------EYNNKKFILVDTPGINDGESQD----NDGKEIRKFLEQISKSDLIIYVVD-ASN-PITEDDKN 99 (116)
T ss_dssp -----------------EETTEEEEEEESSSCSSSSHHH----HHHHHHHHHHHHHCTESEEEEEEE-TTS-HSHHHHHH
T ss_pred -----------------eeceeeEEEEeCCCCcccchhh----HHHHHHHHHHHHHHHCCEEEEEEE-CCC-CCCHHHHH
Confidence 0023356899999998753220 101122335556689999999987 433 33455566
Q ss_pred HHHHhCCCCCceEEEecc
Q 013120 195 ISREVDPTGERTFGVLTK 212 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK 212 (449)
+++++. .+.++++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 777776 78999999998
No 30
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.52 E-value=1.6e-13 Score=121.78 Aligned_cols=154 Identities=16% Similarity=0.260 Sum_probs=81.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
|.|+++|.+|+|||||+|+|++..+ +.+.-+ .|..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 37 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSL------------------------------------------ 37 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccce------------------------------------------
Confidence 7899999999999999999999764 221111 11111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh-cCCCeEEEEEecCCCcc-cchH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-EKPNCIILAISPANQDL-ATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi-~~~d~iIl~v~~a~~d~-~~~~ 191 (449)
.+.........++|+||||+....... ...+ ......++ ..+|++|+|+++..... ....
T Consensus 38 -------------~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~----~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~ 99 (168)
T cd01897 38 -------------FVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTI----EMQAITALAHLRAAVLFLFDPSETCGYSLEE 99 (168)
T ss_pred -------------eEEEEccCceEEEEEECCCcCCccccC-CchH----HHHHHHHHHhccCcEEEEEeCCcccccchHH
Confidence 000111123468999999986432211 0011 11111222 23688888887654321 1122
Q ss_pred HHHHHHHhCCC--CCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 192 AIKISREVDPT--GERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 192 ~~~l~~~~~~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
...+...+... +.++++|+||+|+..... ... ...........++.+++..+.+++.+
T Consensus 100 ~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 100 QLSLFEEIKPLFKNKPVIVVLNKIDLLTFED-LSE-IEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred HHHHHHHHHhhcCcCCeEEEEEccccCchhh-HHH-HHHhhhhccCceEEEEecccCCHHHH
Confidence 23344444333 789999999999975432 111 11111112334566666665555443
No 31
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.51 E-value=1e-13 Score=123.25 Aligned_cols=154 Identities=20% Similarity=0.258 Sum_probs=83.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|.+|||||||+|+|.|....+......|+.|..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~------------------------------------------ 39 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL------------------------------------------ 39 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc------------------------------------------
Confidence 48999999999999999999875421111112222211
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC-cccch--HH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATS--DA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~-d~~~~--~~ 192 (449)
| . +.......+.|+||||+.......+ .+ .......+..+|++|+|++..+. +...+ ..
T Consensus 40 ~----------~--~~~~~~~~~~l~DtpG~~~~~~~~~--~~----~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 40 G----------V--VRVDDGRSFVVADIPGLIEGASEGK--GL----GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred e----------E--EEcCCCCeEEEEecCcccCcccccC--Cc----hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHH
Confidence 0 0 1111224789999999865322110 01 12233445679999999986553 12111 11
Q ss_pred HHHHHHhCC--CCCceEEEeccccccCCCCcHHHHHcCcccc-cCCCeEEEEeCChhhhhc
Q 013120 193 IKISREVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINK 250 (449)
Q Consensus 193 ~~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~ 250 (449)
.+.+....+ .+.+.++|+||+|+.++.... +.+...... ....++.+++....+++.
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGLDE 161 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHH
Confidence 222223322 368899999999997654321 111110111 134466666666555443
No 32
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.1e-12 Score=129.55 Aligned_cols=146 Identities=28% Similarity=0.370 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeec
Q 013120 11 IQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFL 90 (449)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~ 90 (449)
++++++-+........+ ..-++|+++|.+|+|||||||+|+..++ .+++..|
T Consensus 249 ~d~v~s~l~~~~~~e~l----q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~------------------- 300 (531)
T KOG1191|consen 249 LDDVLSHLNKADEIERL----QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP------------------- 300 (531)
T ss_pred HHHHHHHHHhhhhHHHh----hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC-------------------
Confidence 44566655543333333 2458999999999999999999999987 6666666
Q ss_pred cCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh
Q 013120 91 HIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI 170 (449)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi 170 (449)
|++++. |...+. ++...+.|+||.|+.....+ .++..--+.++.-+
T Consensus 301 -------------------------GTTRDa----iea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 301 -------------------------GTTRDA----IEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERARKRI 346 (531)
T ss_pred -------------------------Ccchhh----heeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHHHHHH
Confidence 544433 333233 56778999999999982221 24444445588889
Q ss_pred cCCCeEEEEEecCCCcccchHHHHHHHHhCC------------CCCceEEEeccccccCCCC
Q 013120 171 EKPNCIILAISPANQDLATSDAIKISREVDP------------TGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 171 ~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~------------~~~rti~VltK~D~~~~~~ 220 (449)
+.+|.|++||++...+.+. .+.+++.+.. ...|.+.|.||.|+..+..
T Consensus 347 ~~advi~~vvda~~~~t~s--d~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTES--DLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred hhcCEEEEEeccccccccc--chHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 9999999988764433332 2233332221 1368899999999987744
No 33
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=3.3e-13 Score=119.85 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=79.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.++|+++|..++|||||+|+|+|....+.+..+.|....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS----------------------------------------- 40 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-----------------------------------------
Confidence 468999999999999999999997653333222111110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
... .+.. ...++++|||||+...... ..............++..+|++|++++..+ .. +....
T Consensus 41 --------~~~--~~~~---~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~-~~-~~~~~ 103 (174)
T cd01895 41 --------IDV--PFEY---DGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVIDATE-GI-TEQDL 103 (174)
T ss_pred --------eee--EEEE---CCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEeCCC-Cc-chhHH
Confidence 000 0111 2245889999999865321 111221111224566789999999886443 22 34445
Q ss_pred HHHHHhCCCCCceEEEeccccccCCC
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+.+.+...+.+.++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCcc
Confidence 56666655678999999999998653
No 34
>COG2262 HflX GTPases [General function prediction only]
Probab=99.50 E-value=4e-13 Score=130.77 Aligned_cols=183 Identities=16% Similarity=0.247 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccce
Q 013120 8 VNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYA 87 (449)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~ 87 (449)
|.+|+.=++.+.......+-.......|+|++||-+|||||||+|+|+|...+-.+.-..|--||.=+
T Consensus 166 I~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~------------ 233 (411)
T COG2262 166 IAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR------------ 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE------------
Confidence 33444444433333222222333468999999999999999999999998764444444555553211
Q ss_pred eeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHH
Q 013120 88 EFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 167 (449)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~ 167 (449)
+.-++...+.|-||-|+++. -|..+.+.++. +.
T Consensus 234 ------------------------------------------~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFks-TL 266 (411)
T COG2262 234 ------------------------------------------IELGDGRKVLLTDTVGFIRD----LPHPLVEAFKS-TL 266 (411)
T ss_pred ------------------------------------------EEeCCCceEEEecCccCccc----CChHHHHHHHH-HH
Confidence 23334567999999999984 46667777766 77
Q ss_pred HHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCCh
Q 013120 168 SYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ 245 (449)
Q Consensus 168 ~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (449)
.-..++|.++.||+.++.++.. .....++.++.-...|+|.|+||+|++.... ....+.... . ..+.++..++
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~~~---~-~~v~iSA~~~ 341 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELERGS---P-NPVFISAKTG 341 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhhcC---C-CeEEEEeccC
Confidence 7788999999999877654433 3455678888777899999999999986653 111111111 1 3456666666
Q ss_pred hhhhccCCH
Q 013120 246 ADINKNVDM 254 (449)
Q Consensus 246 ~~~~~~~~~ 254 (449)
.+++.+...
T Consensus 342 ~gl~~L~~~ 350 (411)
T COG2262 342 EGLDLLRER 350 (411)
T ss_pred cCHHHHHHH
Confidence 555444433
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=4.2e-13 Score=137.68 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=82.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...+|+++|.+|+|||||+|+|+|.+....+.. .+|+.+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~------------------------------------ 214 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP------------------------------------ 214 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE------------------------------------
Confidence 456899999999999999999999765333221 1222221111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
+.. +...+++|||||+.+..... ..++......+..+++.+|++|+|++... ..+..
T Consensus 215 ------------------~~~-~~~~~~liDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilV~D~~~--~~~~~ 271 (429)
T TIGR03594 215 ------------------FER-NGKKYLLIDTAGIRRKGKVT--EGVEKYSVLRTLKAIERADVVLLVLDATE--GITEQ 271 (429)
T ss_pred ------------------EEE-CCcEEEEEECCCccccccch--hhHHHHHHHHHHHHHHhCCEEEEEEECCC--CccHH
Confidence 111 22368999999997654321 11222222335678999999999987553 23445
Q ss_pred HHHHHHHhCCCCCceEEEecccccc
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
..++++.+...+.+.++|+||+|+.
T Consensus 272 ~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 272 DLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHHHHcCCcEEEEEECcccC
Confidence 5667777776789999999999998
No 36
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=5.9e-13 Score=137.83 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccC-cccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..++|+++|.+|+|||||+|+|+|..+..++. ..+|+-+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~--------------------------------------- 250 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPV--------------------------------------- 250 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcc---------------------------------------
Confidence 46899999999999999999999986522221 11222221
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHH-HHHHhcCCCeEEEEEecCCCcccch
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM-VRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~-~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
... +.+ +...+.||||||+.+..... ...+....+ +..+++++|++|+|+++.. . .+.
T Consensus 251 -----------~~~--~~~---~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~-~-~s~ 309 (472)
T PRK03003 251 -----------DSL--IEL---GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASE-P-ISE 309 (472)
T ss_pred -----------eEE--EEE---CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCC-C-CCH
Confidence 111 111 22357899999986543211 112222222 3567899999999987543 2 344
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
....++..+...+.++|+|+||+|+...
T Consensus 310 ~~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 310 QDQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4556666666678999999999999753
No 37
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.48 E-value=2.8e-13 Score=122.06 Aligned_cols=126 Identities=27% Similarity=0.411 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...|.|+++|.+|+|||||+|+|+|..+.+.-+. .+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~----~~---------------------------------------- 51 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK----TP---------------------------------------- 51 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC----CC----------------------------------------
Confidence 3678999999999999999999999764222111 11
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC---CCeEEEEEecCCCccc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLA 188 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~---~d~iIl~v~~a~~d~~ 188 (449)
|.+.. +....+ + .++.+|||||+..... +......+..+...|++. ++++|++++.. ..+.
T Consensus 52 ----~~t~~----~~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~-~~~~ 115 (179)
T TIGR03598 52 ----GRTQL----INFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIR-HPLK 115 (179)
T ss_pred ----CcceE----EEEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCC-CCCC
Confidence 10000 000111 1 2689999999865432 223445666777788875 46787777643 3333
Q ss_pred chHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 189 TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 189 ~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.....+.+.+...+.++++|+||+|++..
T Consensus 116 -~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 116 -ELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred -HHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 34445566666678999999999999854
No 38
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=3.2e-13 Score=139.76 Aligned_cols=159 Identities=19% Similarity=0.274 Sum_probs=101.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..|.|++||.+|+|||||+|+|+|..+. .+...|
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-----~v~~~~----------------------------------------- 70 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-----VVEDVP----------------------------------------- 70 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-----cccCCC-----------------------------------------
Confidence 5699999999999999999999997641 111111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|. ..+.+...+.. ....+.||||||+.... ..+...+...+..|++.+|++|+|++..+. . +...
T Consensus 71 ---gv----T~d~~~~~~~~-~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~VvD~~~~-~-s~~~ 135 (472)
T PRK03003 71 ---GV----TRDRVSYDAEW-NGRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVVDATVG-A-TATD 135 (472)
T ss_pred ---CC----CEeeEEEEEEE-CCcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCCC-C-CHHH
Confidence 11 11111111111 22358899999987422 225567778888999999999999976543 2 2233
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCC-eEEEEeCChhhhhccCCHHHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~ 257 (449)
..++..+...+.++++|+||+|+.....+..+.. .++++ .+.+++..+.+++.+...+..
T Consensus 136 ~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~-----~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 136 EAVARVLRRSGKPVILAANKVDDERGEADAAALW-----SLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECccCCccchhhHHHH-----hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 4456666666899999999999865332222221 22222 356888877777766554443
No 39
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.47 E-value=3.6e-13 Score=122.84 Aligned_cols=124 Identities=24% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
.+|.|+++|.+|+|||||+|+|+|..+.+..+.. +|+.+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 63 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI--------------------------------------- 63 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---------------------------------------
Confidence 7899999999999999999999997643322111 11111
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCC---eEEEEEecCCCcc
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPN---CIILAISPANQDL 187 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d---~iIl~v~~a~~d~ 187 (449)
..... ..++.||||||+.... .+.........+...|++.++ .++++++.. ...
T Consensus 64 ------------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~ 120 (196)
T PRK00454 64 ------------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSR-HPL 120 (196)
T ss_pred ------------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecC-CCC
Confidence 01111 2579999999976532 223345566777888887664 455555433 222
Q ss_pred cchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 188 ATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 188 ~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
......+.+.+...+.++++|+||+|+...+
T Consensus 121 -~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 121 -KELDLQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred -CHHHHHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 2222334445555578899999999998654
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=5.1e-13 Score=137.33 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=98.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+|.|+++|.+|+|||||+|+|+|...-.++.. .+|+-..
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~---------------------------------------- 40 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRI---------------------------------------- 40 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccce----------------------------------------
Confidence 37899999999999999999999764111111 1111110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.. .+.+ +...+.+|||||+.... .+....+...+..++..+|++|+|+++.. .. +...
T Consensus 41 ----------~~--~~~~---~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvd~~~-~~-~~~~ 98 (435)
T PRK00093 41 ----------YG--EAEW---LGREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVVDGRA-GL-TPAD 98 (435)
T ss_pred ----------EE--EEEE---CCcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHH
Confidence 00 1111 12568999999998622 12556677778889999999999987543 22 3333
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCC-eEEEEeCChhhhhccCCHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~ 255 (449)
..+++.+...+.++++|+||+|.........++ ..++.+ ++.++...+.++..+...+
T Consensus 99 ~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~I 157 (435)
T PRK00093 99 EEIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDAI 157 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHHH
Confidence 345555555589999999999975433222232 233443 6778877777666554433
No 41
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=9.8e-13 Score=135.21 Aligned_cols=127 Identities=21% Similarity=0.289 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..++|+|+|.+|+|||||+|+|+|.+..+++..+ +|+.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~-------------------------------------- 213 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSID-------------------------------------- 213 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEE--------------------------------------
Confidence 4579999999999999999999998754333221 2222111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
..+. .+...+.+|||||+.+....+ ...+.....-+.++++.+|++|+|++... . .+..
T Consensus 214 ----------------~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~-~~~~ 272 (435)
T PRK00093 214 ----------------TPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVIDATE-G-ITEQ 272 (435)
T ss_pred ----------------EEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEEeCCC-C-CCHH
Confidence 1111 123468999999997644321 11222222335578999999999887543 3 3445
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
...++..+...+.++++|+||+|+.+.
T Consensus 273 ~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 273 DLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 566777777778999999999999843
No 42
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.2e-11 Score=123.32 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=113.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
--.|++.|+.|+||||++||++..++||.|.|+||.|-.++. ..++.+.+....+.+ .-.|...+...+......
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve---gadG~e~vl~~~~s~--ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE---GADGAEAVLATEGSE--EKIDMKTINQLAHALKPD 183 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec---ccCCcceeeccCCCc--ccccHHHHhHHHHhcCcc
Confidence 347999999999999999999999999999999999997765 223333333333211 122333333222211111
Q ss_pred hhCCCCCcccccEEEEEecCCC------CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Q 013120 114 ETGRTKQISSVPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL 187 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~------~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~ 187 (449)
. . ....--+.|+.|+. .++.++|.||++-.+.. ...+.++..++|++|||+.+.|+ +
T Consensus 184 ~-----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------tswid~~cldaDVfVlV~NaEnt-l 246 (749)
T KOG0448|consen 184 K-----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TSWIDSFCLDADVFVLVVNAENT-L 246 (749)
T ss_pred c-----c-cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hHHHHHHhhcCCeEEEEecCccH-h
Confidence 1 0 11223445666554 36999999999976543 56788899999999999875553 2
Q ss_pred cchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHc
Q 013120 188 ATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (449)
Q Consensus 188 ~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (449)
+....++...+......++++.||+|....+.++.+.+.
T Consensus 247 -t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 247 -TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred -HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHH
Confidence 445556777777666777788899999887766655443
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.47 E-value=2.8e-13 Score=119.35 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=84.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|.+|+|||||+|+++|..+.+......|......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 689999999999999999999876332111111111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch-HHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~~-~~~ 193 (449)
.+.+.+ ....+.++||||.... ..+...+++.+|++|+|++..+.. +... ..+
T Consensus 41 -----------~~~~~~-~~~~l~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 -----------TMYLED-KTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred -----------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 011111 1135889999995432 567888999999999998754321 1111 111
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
.......+.+.++++|+||+|+........+............++.+++....+++.+
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKEL 153 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence 1222222235899999999999643321111111111223355666666665554443
No 44
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.47 E-value=3.8e-13 Score=119.10 Aligned_cols=153 Identities=13% Similarity=0.149 Sum_probs=90.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|.+++|||||++++++..+.+.....++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 41 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA----------------------------------------- 41 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE-----------------------------------------
Confidence 358999999999999999999998763222111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
...+.+.+ ....+.++||||.... ..+...|++.++++|+|++..+..... ..
T Consensus 42 -----------~~~~~~~~-~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 42 -----------TRSIQIDG-KTIKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred -----------EEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 00111111 1235889999996542 456778899999999998765422111 11
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
.+..++...+.+.+.++|.||+|+........+.........+.+|+.+++.++.+++...
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 2223334444568999999999987543211111111111234568888888776665443
No 45
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=4.8e-13 Score=121.79 Aligned_cols=116 Identities=13% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||..+ ...+...|++.+|++|+|++..+.+... ...+..+....+.+.|+++|+||+
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 50 VKLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 3588999999543 2455678899999999998765432110 122334444555578999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREY 264 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~f 264 (449)
|+........+.........+.+|+.+++.++.+++.+...+.+...+...
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 117 DMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred cchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 996432111111111112234578999998888888877777666665543
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=5.4e-13 Score=136.93 Aligned_cols=153 Identities=24% Similarity=0.293 Sum_probs=100.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccC-cccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.|+++|.+|+|||||+|+|+|...-.++. ..+|+-....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~---------------------------------------- 40 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYG---------------------------------------- 40 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEE----------------------------------------
Confidence 48999999999999999999976422221 1122222111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+.. ....+.+|||||+.... ..+...+...+..+++.+|++++|++... .. +.....
T Consensus 41 --------------~~~~-~~~~~~liDTpG~~~~~-----~~~~~~~~~~~~~~~~~ad~vl~vvD~~~-~~-~~~d~~ 98 (429)
T TIGR03594 41 --------------DAEW-GGREFILIDTGGIEEDD-----DGLDKQIREQAEIAIEEADVILFVVDGRE-GL-TPEDEE 98 (429)
T ss_pred --------------EEEE-CCeEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHhhCCEEEEEEeCCC-CC-CHHHHH
Confidence 1111 22358999999986432 23667788889999999999999887543 22 444455
Q ss_pred HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCC-CeEEEEeCChhhhhccCCHH
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~ 255 (449)
+++.+...+.++++|+||+|.........++ ..++. .++.+++..+.++..+.+..
T Consensus 99 i~~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 99 IAKWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred HHHHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 6666666789999999999987654333222 23444 46777777766665554443
No 47
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.46 E-value=1.4e-12 Score=113.97 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=85.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|.+++|||||+|+|+|......+..+.|...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 38 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD-------------------------------------------- 38 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc--------------------------------------------
Confidence 799999999999999999999764222211111100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
.....+. .....++++||||+...... ........+..++.++|+++++++..+ .......++
T Consensus 39 ---------~~~~~~~-~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~~--~~~~~~~~~ 101 (157)
T cd04164 39 ---------VIEESID-IGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDASR--GLDEEDLEI 101 (157)
T ss_pred ---------eEEEEEE-eCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEECCC--CCCHHHHHH
Confidence 0000111 12346899999998764321 222222345667889999988887553 223333444
Q ss_pred HHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhh
Q 013120 196 SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (449)
Q Consensus 196 ~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (449)
... ..+.+.++|+||+|+.+.... ........++.+++....+++
T Consensus 102 ~~~--~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 102 LEL--PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred HHh--hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 443 447899999999999865432 112223456666655544433
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.46 E-value=3.5e-13 Score=119.80 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=89.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+++|.+|+|||||++++++..|-+. ..+++.....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~---------------------------------------- 41 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFK---------------------------------------- 41 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEE----------------------------------------
Confidence 46899999999999999999999876221 1111110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
...+.+.+ ....+.++||||.... ..+...+++++|++|++++..+.+-.. ..
T Consensus 42 -----------~~~~~~~~-~~~~l~l~D~~g~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 42 -----------IRTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDEKSFENIRN 96 (167)
T ss_pred -----------EEEEEECC-EEEEEEEEeCCchHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence 00111111 1236889999996542 455678899999999998754322110 12
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
.+..++...+.+.++++|.||+|+.+......+.........+.+|+.++...+.+++...
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAF 157 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 2222333344578999999999997543211111111122344567888877766555443
No 49
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=3.8e-13 Score=137.35 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=91.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-+..|++||.+|||||||||+|++...-..+...+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 3568999999999999999999986521111122444442211
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC----ccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ----DLA 188 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~----d~~ 188 (449)
+.. ....++|+||||++.....+ ..+......++.++++||+||+.++. +..
T Consensus 201 -----------------v~~-~~~~f~laDtPGliegas~g------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~ 256 (500)
T PRK12296 201 -----------------VQA-GDTRFTVADVPGLIPGASEG------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPL 256 (500)
T ss_pred -----------------EEE-CCeEEEEEECCCCccccchh------hHHHHHHHHHHHhcCEEEEEECCcccccccCch
Confidence 111 12368999999998644321 11222245567889999999886542 111
Q ss_pred ch-HHH--HHHHHh----------CCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 189 TS-DAI--KISREV----------DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 189 ~~-~~~--~l~~~~----------~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.. +.+ +|.... .....+.|+|+||+|+.+... ..+.+..........++.+++.+..+++.+...+
T Consensus 257 ~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 257 SDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 11 111 122211 123689999999999864332 2222221111123456777777766666555444
Q ss_pred H
Q 013120 256 A 256 (449)
Q Consensus 256 ~ 256 (449)
.
T Consensus 336 ~ 336 (500)
T PRK12296 336 A 336 (500)
T ss_pred H
Confidence 3
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.45 E-value=5.8e-13 Score=118.16 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||..+. ..+...|++++|++++|++..+.+... .+++..++...+...+.++|.||+
T Consensus 50 ~~~~l~Dt~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEEECCChHHH-------------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 35889999996542 456788899999999998765432111 122223333344467899999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCC
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
|+........+........++.+|+.+++.++.+++.+..
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 117 DMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9975432111111111122344677777776666554443
No 51
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=8.8e-13 Score=133.05 Aligned_cols=122 Identities=24% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
++.|++||.+|||||||||+|++...--.....+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 458999999999999999999986520001112344442111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC---cccch
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ---DLATS 190 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~---d~~~~ 190 (449)
+..++...++|+||||+......+ ..+.....+++.+++++|+|++.++. +.. .
T Consensus 200 ----------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~-e 256 (424)
T PRK12297 200 ----------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI-E 256 (424)
T ss_pred ----------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChH-H
Confidence 111223468999999998644321 11122234456679999999986543 221 1
Q ss_pred HHHHH---HHHhCC--CCCceEEEecccccc
Q 013120 191 DAIKI---SREVDP--TGERTFGVLTKIDLM 216 (449)
Q Consensus 191 ~~~~l---~~~~~~--~~~rti~VltK~D~~ 216 (449)
+...+ +..+.+ ...+.++|+||+|+.
T Consensus 257 ~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 257 DYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 22223 333333 368999999999974
No 52
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.45 E-value=6.9e-13 Score=130.38 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=88.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
++.|++||.+|||||||||+|++...-......+|..|+.-.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v------------------------------------- 199 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV------------------------------------- 199 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE-------------------------------------
Confidence 4689999999999999999999865211111234555533221
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~ 191 (449)
...+...++|+||||+......+ ..+.....+++.+++++|+|++..+.+.. . .+
T Consensus 200 -----------------~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~ 256 (329)
T TIGR02729 200 -----------------RVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIED 256 (329)
T ss_pred -----------------EeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHH
Confidence 11123468999999998654321 11233355567789999999876543211 1 11
Q ss_pred HHHHHH---HhCC--CCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 192 AIKISR---EVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 192 ~~~l~~---~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
...+.+ .+.+ ...+.++|+||+|+..... ..+..+.....+...++.++.....+++.
T Consensus 257 l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 257 YEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDE 319 (329)
T ss_pred HHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHH
Confidence 112222 2332 3679999999999975422 22222111111223456666655554443
No 53
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=1e-12 Score=117.04 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|.+|+|||||++++++..+-+....+.+.....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~---------------------------------------- 43 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA---------------------------------------- 43 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE----------------------------------------
Confidence 4589999999999999999999987533322111111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
..+.+.+ ....+.++||||... ...+...|++.+|++|+|++..+.. .-....
T Consensus 44 ------------~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~v~d~~~~~-s~~~~~ 96 (168)
T cd01866 44 ------------RMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLT 96 (168)
T ss_pred ------------EEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECCCHH-HHHHHH
Confidence 0111111 113588999999543 2566788999999999998755321 112222
Q ss_pred HHHHHh---CCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 194 KISREV---DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 194 ~l~~~~---~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
.+...+ ...+.+.++|.||+|+..+.....+.........+..|+.++..+..+++...
T Consensus 97 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 97 SWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 333322 22367899999999987433211111111112334567777777766665443
No 54
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.44 E-value=4.4e-13 Score=117.19 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=53.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..+.++||||+..... .....+...+..++..+|.+++++++... . ......+.+.+...+.++++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~-~~~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDGREG-L-TPADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEecccc-C-CccHHHHHHHHHhcCCCEEEEEECccc
Confidence 4689999999987532 23444555667788999999998875432 2 222234455555557999999999999
Q ss_pred cCCC
Q 013120 216 MDKG 219 (449)
Q Consensus 216 ~~~~ 219 (449)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 7653
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.43 E-value=1.4e-12 Score=115.65 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=62.3
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEecccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.+.++||||.... ..+...|++++|++|+|++..+.+-.. ...+..++.....+.+.++|.||+|
T Consensus 52 ~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~D 118 (166)
T cd01869 52 KLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEECCCcHhH-------------HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChh
Confidence 5789999996542 456778899999999999765432110 1122223333334679999999999
Q ss_pred ccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCC
Q 013120 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
+........+.........+.+|+.+++..+.+++....
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 119 LTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHH
Confidence 865432111111111123345678888877766655443
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.43 E-value=9.7e-13 Score=116.01 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=89.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|.+++|||||+++|++..+-+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 689999999999999999998775332221111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~ 193 (449)
....+.+. .....+.|+|+||.... ..+...+++++|++|++++..+..-.. ...+
T Consensus 38 --------~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04113 38 --------GSKIIRVG-GKRVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITNRTSFEALPTWL 95 (161)
T ss_pred --------EEEEEEEC-CEEEEEEEEECcchHHH-------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011111 12245889999997542 456788899999999998765532111 1222
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
...+.....+.+.++|.||+|+........+............|+.+++.+..+++...
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 22333444578999999999997543211111111112233567888877766655443
No 57
>PRK04213 GTP-binding protein; Provisional
Probab=99.43 E-value=1.8e-12 Score=118.89 Aligned_cols=124 Identities=23% Similarity=0.381 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..+.|+++|.+|+|||||+|+|+|..+ +.+..+ +|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 467999999999999999999999764 332211 11111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc----CCCeEEEEEecCCC--
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE----KPNCIILAISPANQ-- 185 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~----~~d~iIl~v~~a~~-- 185 (449)
..+.+ .++++|||||+...... +....+.++.+...|+. .++.+++|+++...
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 15899999997543221 12234556666767764 34677777765431
Q ss_pred ---ccc----chHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 186 ---DLA----TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 186 ---d~~----~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+. ......+.+.+...+.+.++|+||+|+...
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 110 112233444444457899999999998754
No 58
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.42 E-value=1.3e-12 Score=114.57 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.++.+|||||+....... . -..+...|+. ++|++|++++.... . ....+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~~----~---~~~~~~~~~~~~~~d~vi~v~d~~~~--~--~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYS----E---DEKVARDFLLGEKPDLIVNVVDATNL--E--RNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCCC----h---hHHHHHHHhcCCCCcEEEEEeeCCcc--h--hHHHHHHHHHHcCCCEEEEEehh
Confidence 468999999987644221 1 1345666775 89999998875432 1 12234444444578999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
|+.+....... .......++..++.++.....++..
T Consensus 112 Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 112 DEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred hhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHH
Confidence 99754321111 1111122344567777666555544
No 59
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.42 E-value=1.9e-12 Score=118.60 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=89.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|.+|+|||||++++++..| +....+++.......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~---------------------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRP---------------------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccccee----------------------------------------
Confidence 689999999999999999999875 322222221110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
.+.+. .....+.|+||||....+.. ...........+++.+|++|+|++..+.+-. .....+
T Consensus 41 -----------~i~~~-~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~-~~~~~~ 102 (198)
T cd04142 41 -----------AVVLS-GRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSPDSF-HYVKLL 102 (198)
T ss_pred -----------EEEEC-CEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCHHHH-HHHHHH
Confidence 01111 11235789999998654321 1222233456678999999999976543211 111112
Q ss_pred HH---Hh---CCCCCceEEEeccccccCCCCcHHHHHcCc-ccccCCCeEEEEeCChhhhhccC
Q 013120 196 SR---EV---DPTGERTFGVLTKIDLMDKGTDAADILEGK-SYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 196 ~~---~~---~~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
.+ .. ...+.|+++|.||+|+........+.++.. ....+.+|+.+++.++.+++.++
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence 22 21 245789999999999965322111111110 11235678888888776665544
No 60
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.42 E-value=2.4e-12 Score=111.90 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=53.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..++.++||||+....... ......+..++..+|.+++++++..... .....+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d~il~v~~~~~~~~--~~~~~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERADLILFVVDADLRAD--EEEEKLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHhcCCeEEEEEEccc
Confidence 5689999999998765331 1112467778899999999887655332 2222234444455889999999999
Q ss_pred ccCCCC
Q 013120 215 LMDKGT 220 (449)
Q Consensus 215 ~~~~~~ 220 (449)
+.....
T Consensus 116 ~~~~~~ 121 (163)
T cd00880 116 LLPEEE 121 (163)
T ss_pred cCChhh
Confidence 986543
No 61
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.42 E-value=1.4e-12 Score=115.41 Aligned_cols=151 Identities=13% Similarity=0.173 Sum_probs=86.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|.+++|||||+|++++..+.+....+.+ .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~-~--------------------------------------------- 35 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG-I--------------------------------------------- 35 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-e---------------------------------------------
Confidence 689999999999999999999876321111100 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~ 193 (449)
......+.+.+ ....+.++||||.... ..+...|++.+|++|+|++..+.+... ...+
T Consensus 36 ------~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 36 ------DYGVKKVSVRN-KEVRVNFFDLSGHPEY-------------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred ------eEEEEEEEECC-eEEEEEEEECCccHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 00000111111 2346899999997542 456678899999999998755432110 1122
Q ss_pred HHHH-HhCC----CCCceEEEeccccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhccCC
Q 013120 194 KISR-EVDP----TGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 194 ~l~~-~~~~----~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
..+. ...+ .+.+.++|.||+|+..+.. ...+... .....+..|+.+++.+..+++....
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeEEEEECCCCCCHHHHHH
Confidence 2222 2222 4678999999999974321 1111100 0112234577777777666554433
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.42 E-value=1.7e-12 Score=114.60 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=60.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH----HHHHHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI----KISREVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~----~l~~~~~~~~~rti~Vlt 211 (449)
..+.++||||..+. ..+...|++.+|++|+|++..+..- -.... .+.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEEF-------------SAMREQYMRTGEGFLLVFSVTDRGS-FEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 35889999997653 4567789999999999987654221 11111 122323345779999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
|+|+........+.........+..++.+++.++.+++..
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 116 KADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred CccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence 9998754321111111111123446777777666655443
No 63
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.41 E-value=1.6e-12 Score=117.33 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..+. ......++..+|++++++++... . ......+...+...+.+.++|+||+|
T Consensus 61 ~~~~~liDtpG~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~-~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHEDF-------------SSEVIRGLSVSDGAILVVDANEG-V-QPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHHH-------------HHHHHHHHHhcCEEEEEEECCCC-C-cHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999997652 45577888999999998875432 1 22333344444446889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 64
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.41 E-value=1.8e-12 Score=115.01 Aligned_cols=151 Identities=13% Similarity=0.183 Sum_probs=88.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|..++|||||++++.+..+.+... +++.......
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~~~~~---------------------------------------- 42 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFGTR---------------------------------------- 42 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC-cccceeEEEE----------------------------------------
Confidence 79999999999999999999887633221 1111110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~ 193 (449)
.+.+. .....+.++||||.... ..+...|++++|++|+|++..+..-.. ...+
T Consensus 43 -----------~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~ 97 (166)
T cd04122 43 -----------IIEVN-GQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL 97 (166)
T ss_pred -----------EEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 01111 11235889999996542 566788999999999999765432111 1222
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
...+.......+.++|.||+|+........+.........+..|+.+++.++.+++...
T Consensus 98 ~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 98 TDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 22233333467899999999997543211111111111234567888877776665443
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.41 E-value=2.1e-12 Score=114.20 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHH-HHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIK-ISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~-l~~~~~~~~~rti~VltK 212 (449)
..+.++||||..+. ..+...|++.+|++|++++..+..-. . ..... +.+.......|+++|.||
T Consensus 48 ~~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK 114 (164)
T smart00173 48 CLLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNK 114 (164)
T ss_pred EEEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 45789999997653 45567889999999998875432110 0 11111 222233346799999999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
+|+........+.........+.+|+.+++.++.+++...
T Consensus 115 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 115 CDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred ccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 9987533211111111111233567777777766655443
No 66
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.41 E-value=3.6e-12 Score=138.13 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCC-cccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL-PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~l-P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..++|+++|.+|+|||||+|+|+|..+. +.....+|+-+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~-------------------------------------- 490 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD-------------------------------------- 490 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--------------------------------------
Confidence 4689999999999999999999998752 1111122222211
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHH-HHHHHhcCCCeEEEEEecCCCcccch
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIEN-MVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~-~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
. .+.+ +..++.||||||+.+..... ...+.... .+..+++.+|++|+|++... .. +.
T Consensus 491 ------------~--~~~~---~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~-~~-s~ 548 (712)
T PRK09518 491 ------------E--IVEI---DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQ-PI-SE 548 (712)
T ss_pred ------------e--EEEE---CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCC-CC-CH
Confidence 1 1111 23467899999987533221 01122222 24567899999999887543 33 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
....++..+...+.++++|+||+|+.+.
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 4455666666678999999999999754
No 67
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.41 E-value=1.4e-12 Score=114.98 Aligned_cols=99 Identities=22% Similarity=0.293 Sum_probs=57.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~VltK 212 (449)
...+.+|||||..+. ......++..+|++|+|++... ++. ..+.+.+++... ..+.++|+||
T Consensus 50 ~~~~~~~DtpG~~~~-------------~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEKF-------------IKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHHH-------------HHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 347899999997442 2345677889999999887543 221 122223333221 2489999999
Q ss_pred ccccCCCC------cHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 213 IDLMDKGT------DAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 213 ~D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
+|+..... ++.+.+.... .....++.++..+..+++.
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 114 ADLVDEDWLELVEEEIRELLAGTF-LADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEeCCCCcCHHH
Confidence 99975421 1112222100 0234577777776665544
No 68
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.41 E-value=1.7e-12 Score=114.51 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=58.7
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHH---hCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE---VDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~---~~~~~~rti~VltK~ 213 (449)
.+.++|+||.... ..+...+++++|++|++++..+.. .......+... ....+.++++|.||+
T Consensus 50 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQERF-------------RSITSSYYRGAVGALLVYDITNRE-SFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCChHHH-------------HHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 5789999995432 456788899999999999765421 11222222222 222478999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+........+.........+..|+.+....+.+++...
T Consensus 116 D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 116 DLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 987532211111111112233456667666655544433
No 69
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.41 E-value=1.6e-12 Score=115.77 Aligned_cols=105 Identities=12% Similarity=0.202 Sum_probs=60.0
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cch-HHH-HHHHHhC---CCCCceEEEe
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS-DAI-KISREVD---PTGERTFGVL 210 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~~-~~~-~l~~~~~---~~~~rti~Vl 210 (449)
.+.++|+||.... ..+...|++++|++|++++..+... ... ... .+..... +.+.++++|+
T Consensus 50 ~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 50 TLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred EEEEEeCCChHHH-------------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 5789999996542 4567789999999999987543221 111 111 1233333 3378999999
Q ss_pred ccccccCCCCcHHHHHcCccccc-CCCeEEEEeCChhhhhccCCH
Q 013120 211 TKIDLMDKGTDAADILEGKSYRL-KFPWIGVVNRSQADINKNVDM 254 (449)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~ 254 (449)
||+|+..+.....+.+....... ...++.+++..+.+++.....
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 117 NKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred ECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHH
Confidence 99999843221111111111112 246777777766665544433
No 70
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.40 E-value=2.3e-12 Score=117.95 Aligned_cols=121 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
..|+++|..|+|||||+|+|+|... |.....++. .. ..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~-~~--~~-------------------------------------- 39 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTG-VV--ET-------------------------------------- 39 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccC-cc--cc--------------------------------------
Confidence 3799999999999999999999754 221111111 00 00
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
+ ... ..+..+..++++++||||+...... ....++. ..+.++|.++++. + .++ ++....
T Consensus 40 ---t----~~~--~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~---~~~~~~d~~l~v~-~--~~~-~~~d~~ 98 (197)
T cd04104 40 ---T----MKR--TPYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEE---MKFSEYDFFIIIS-S--TRF-SSNDVK 98 (197)
T ss_pred ---c----cCc--eeeecCCCCCceEEeCCCCCcccCC-----HHHHHHH---hCccCcCEEEEEe-C--CCC-CHHHHH
Confidence 0 000 0122234568999999999864321 1111111 1256788877763 2 233 344445
Q ss_pred HHHHhCCCCCceEEEeccccccCC
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+++.+...+.++++|+||+|+..+
T Consensus 99 ~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 99 LAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHHhCCCEEEEEecccchhh
Confidence 666666668899999999999643
No 71
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.40 E-value=2.4e-12 Score=113.44 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=59.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHH-HH--hCCCCCceEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKIS-RE--VDPTGERTFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~-~~--~~~~~~rti~Vl 210 (449)
..+.++||||..+. ..+...|++++|++|+|++..+..-. ....+..+ +. +...+.|+++|+
T Consensus 45 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 45 LSFTAFDMSGQGKY-------------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEEECCCCHhh-------------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 46899999997653 45677899999999999876542110 01112211 11 123478999999
Q ss_pred ccccccCCCC--cHHHHHcCccc-ccCCCeEEEEeCChhhhhccCC
Q 013120 211 TKIDLMDKGT--DAADILEGKSY-RLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~~-~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
||+|+..... +..+.+..... .....++.++++++.+++....
T Consensus 112 NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 112 NKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred eCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 9999875322 12222221110 1112356666776666655443
No 72
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.40 E-value=1.8e-12 Score=114.27 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH---HHHh-CCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI---SREV-DPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l---~~~~-~~~~~rti~Vlt 211 (449)
..+.|+||||.... ..+...|++++|++++|++..+.+. -.....+ +... ...+.|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 49 CMLEILDTAGTEQF-------------TAMRDLYIKNGQGFVLVYSITSQSS-FNDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred EEEEEEECCCcccc-------------chHHHHHhhcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 35789999997653 4556788999999999987544221 1112122 2222 234689999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+|+........+.........+.+|+.++++++.+++...
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 115 KCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred CccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99986533211111111111223567777777666655433
No 73
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.40 E-value=1.8e-12 Score=140.10 Aligned_cols=159 Identities=22% Similarity=0.293 Sum_probs=99.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|++|+|||||+|+|+|... .++ ..|
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vg-----n~p------------------------------------------- 34 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVG-----NWA------------------------------------------- 34 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccC-----CCC-------------------------------------------
Confidence 4799999999999999999999764 121 112
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|.+. +.....+ ..+...+.+|||||+.+......+.+.. +.+++.|+. ++|++|+|+++.+. ...
T Consensus 35 -GvTv----e~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~vI~VvDat~l----er~ 101 (772)
T PRK09554 35 -GVTV----ERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----ERN 101 (772)
T ss_pred -CceE----eeEEEEE-EcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCEEEEEecCCcc----hhh
Confidence 1110 0001111 1233468999999998764322212222 334666754 89999988876542 233
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
+.+..++...+.|+++|+||+|..++.....+ ++.-...++.+++.++.+.++++++....+.
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id-~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRID-IDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHH-HHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 45666666778999999999998754332111 1111234567788888888877766554443
No 74
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.40 E-value=5.5e-12 Score=119.06 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
.-.+|+|+|..|+|||||+|+|+|....+++.. .+|..+.....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~----------------------------------- 74 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSG----------------------------------- 74 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEE-----------------------------------
Confidence 446999999999999999999999887555432 23333322110
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLAT 189 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~ 189 (449)
..+...+++|||||+......+ .....+.+.+..|+. ..++|+++.........
T Consensus 75 --------------------~~~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~- 130 (249)
T cd01853 75 --------------------TVDGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD- 130 (249)
T ss_pred --------------------EECCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCC-
Confidence 0123468999999998753221 133445556777886 46776655432222222
Q ss_pred hHHHHHHHHhCC---C--CCceEEEeccccccCCCC
Q 013120 190 SDAIKISREVDP---T--GERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 190 ~~~~~l~~~~~~---~--~~rti~VltK~D~~~~~~ 220 (449)
.....+++.+.. . ..++++|+||+|...+..
T Consensus 131 ~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 131 YLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 222233333322 1 368999999999986643
No 75
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.40 E-value=1.4e-12 Score=113.69 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|.+++|||||+|++.+..+.+.... |..+ .
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~---~---------------------------------------- 36 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGV---D---------------------------------------- 36 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceee---e----------------------------------------
Confidence 799999999999999999999876332111 1000 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
.....+.+. ....++.++|+||.... ..+...+++++|++|++++....+ .......+
T Consensus 37 -------~~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~ 94 (159)
T cd00154 37 -------FKSKTIEID-GKTVKLQIWDTAGQERF-------------RSITPSYYRGAHGAILVYDITNRE-SFENLDKW 94 (159)
T ss_pred -------eEEEEEEEC-CEEEEEEEEecCChHHH-------------HHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHH
Confidence 000011111 11246889999997542 456788899999999998765422 11122222
Q ss_pred H---HHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 196 S---REVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 196 ~---~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
. ......+.++++|+||+|+..+.....+.+..........++.+....+.+++.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEE 152 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 2 222224689999999999973222111111111112345566666665554443
No 76
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.39 E-value=3.1e-12 Score=112.44 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=60.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHH-HHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAI-KISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~~~-~l~~~~~~~~~rti~VltK~ 213 (449)
.+.++||||.... ..+...|++++|+++++++..+...... ..+ .+.+.....+.++++|.||+
T Consensus 50 ~~~i~Dt~G~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCcch-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4778999997542 5667789999999988886543221111 111 22333334578999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+........+. ......++..|+.+++.++.++++..
T Consensus 117 Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 117 DLAARTVSSRQG-QDLAKSYGIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ccccceecHHHH-HHHHHHhCCeEEEecCCCCCCHHHHH
Confidence 987533211111 11111234467777777766665443
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.39 E-value=3.2e-12 Score=112.95 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...++.++|++|++++..+.+... ..++..+.... .+.+.++|+||+
T Consensus 52 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 117 (164)
T cd04101 52 VELFIFDSAGQELY-------------SDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKM 117 (164)
T ss_pred EEEEEEECCCHHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 46899999996432 566788999999999998754422111 11222222222 358999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+...........+......+..++.+++....+++...
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHH
Confidence 986543211111111112233456777666655554433
No 78
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.39 E-value=2.1e-12 Score=115.28 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-----ccchHHHHH---HHHhCC-----
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-----LATSDAIKI---SREVDP----- 201 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-----~~~~~~~~l---~~~~~~----- 201 (449)
..++.++||||+.......+ .+ ..-...+++.+|+++++++..+.+ ....+...+ +.....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~--~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEGR--GL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcCC--Cc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 45689999999865332211 11 112355688899999998865532 111111111 111111
Q ss_pred --CCCceEEEeccccccCCC
Q 013120 202 --TGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 202 --~~~rti~VltK~D~~~~~ 219 (449)
.+.|.++|+||+|+....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAE 136 (176)
T ss_pred HHhhCCeEEEEEchhcCchh
Confidence 368999999999997654
No 79
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.39 E-value=3.1e-12 Score=113.22 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc-hHHHH-HHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIK-ISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~-~~~~~-l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...|++++|++|+|++..+..- .. ...+. +.+.....+.|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (164)
T cd04175 49 CMLEILDTAGTEQF-------------TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 115 (164)
T ss_pred EEEEEEECCCcccc-------------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 45789999997653 4567789999999999987543211 11 11111 222223446899999999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
+|+........+........++..|+.++++...+++..
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 116 CDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred CcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 999753221111111111123345677776665555443
No 80
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.38 E-value=4.8e-12 Score=114.45 Aligned_cols=115 Identities=21% Similarity=0.331 Sum_probs=72.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|.+|+|||||++++++..+... .|+.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~-------~~t~------------------------------------------ 35 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNT-------VPTK------------------------------------------ 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCc-------CCcc------------------------------------------
Confidence 799999999999999999998765211 1210
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK- 194 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~- 194 (449)
++....+.+.+.......+.++||||.... ..+...|++++|++|++++..+.+.. .....
T Consensus 36 ----~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~-~~~~~~ 97 (183)
T cd04152 36 ----GFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------------RPLWKSYTRCTDGIVFVVDSVDVERM-EEAKTE 97 (183)
T ss_pred ----ccceeEEEeeccCCCceEEEEEECCCcHhH-------------HHHHHHHhccCCEEEEEEECCCHHHH-HHHHHH
Confidence 011111111111123346899999996542 45678889999999999975542211 11111
Q ss_pred ---HHHHhCCCCCceEEEeccccccC
Q 013120 195 ---ISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 195 ---l~~~~~~~~~rti~VltK~D~~~ 217 (449)
+.+.....+.|+++|+||+|+..
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 22222334789999999999864
No 81
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.38 E-value=3.4e-12 Score=112.46 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=86.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|.+|+|||||++++++..+ +.+..+.+.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~------------------------------------------ 38 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYR------------------------------------------ 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEE------------------------------------------
Confidence 689999999999999999998765 2222221111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~ 193 (449)
...........+.++||||.... ..+...+++.+++++++++..+.+.. .....
T Consensus 39 -----------~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 39 -----------KKVVLDGEDVQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred -----------EEEEECCEEEEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011112235889999997553 45577789999999988864432110 11222
Q ss_pred -HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 194 -KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 194 -~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
.+.+.......|.++|+||+|+.................++.+++.++++.+.++++..
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 22333234578999999999997632211111111112234567777777766665443
No 82
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.38 E-value=2.7e-12 Score=115.26 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.|+||||..+. ..++..|+..+|++|+|++..+. . ....+.....+...+.+.++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~-~-~~~~~~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDATQG-V-EAQTLANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChhh-------------HHHHHHHHHhcCeEEEEEECCCC-c-cHhhHHHHHHHHHcCCCEEEEEECCC
Confidence 345889999999763 45677889999999999875542 2 22222322333335788999999999
Q ss_pred ccC
Q 013120 215 LMD 217 (449)
Q Consensus 215 ~~~ 217 (449)
+..
T Consensus 131 l~~ 133 (179)
T cd01890 131 LPS 133 (179)
T ss_pred CCc
Confidence 864
No 83
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.37 E-value=2.9e-12 Score=112.94 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=58.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhC--CCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD--PTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~--~~~~rti~VltK~ 213 (449)
..+.|+||||..+ ...+...|++++|++++|++..+.+. ......+...+. ..+.|.++|.||+
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~s-~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRES-FEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 4589999999543 25567889999999999887544221 111112222222 2368999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
|+........+........++.+++.++.+.+.+++.
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 117 DLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9975432111111111122344677777766555543
No 84
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=2.1e-12 Score=119.47 Aligned_cols=125 Identities=24% Similarity=0.321 Sum_probs=84.7
Q ss_pred CCCeE-EEECCCCCCHHHHHHHhhCCCCCccc-CcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 33 SLPAI-AVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 33 ~lP~I-vVvG~~saGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
.-|.. .++|.+|+|||||+|||++...-|++ .+.||+-++...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~----------------------------------- 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR----------------------------------- 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-----------------------------------
Confidence 34554 49999999999999999976665666 344555442211
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
.+.+..+|+|+||||+.+...+ ...++...+.|+.+.|.++++......++.+.
T Consensus 82 --------------------~~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d 135 (296)
T COG3596 82 --------------------LSYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLDLVLWLIKADDRALGTD 135 (296)
T ss_pred --------------------hhccccceEEecCCCcccchhh------hHHHHHHHHHHhhhccEEEEeccCCCccccCC
Confidence 1113457999999999985433 34568889999999997655554333344333
Q ss_pred HHHHHHHHhCC--CCCceEEEeccccccCCCC
Q 013120 191 DAIKISREVDP--TGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 191 ~~~~l~~~~~~--~~~rti~VltK~D~~~~~~ 220 (449)
..+++.+-- .++|+++|+|.+|...++.
T Consensus 136 --~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 136 --EDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred --HHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 334444432 2489999999999987763
No 85
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=3.9e-12 Score=112.76 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||... ...+...+++.+|+++++++..+..... ...+..+....+.+.+.++|.||+
T Consensus 52 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 118 (165)
T cd01864 52 VKLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC 118 (165)
T ss_pred EEEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 3689999999543 2556788999999999998765432111 123333333444577899999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|+....
T Consensus 119 Dl~~~~ 124 (165)
T cd01864 119 DLEEQR 124 (165)
T ss_pred cccccc
Confidence 997543
No 86
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.37 E-value=3.1e-12 Score=118.80 Aligned_cols=107 Identities=20% Similarity=0.127 Sum_probs=61.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCC---CCCceEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP---TGERTFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~---~~~rti~Vl 210 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+-.. ..++..+..... ...+.++|.
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVg 116 (215)
T cd04109 50 VTLQVWDIGGQSIG-------------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVG 116 (215)
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 46889999995432 566788999999999999765432111 112222333322 234688999
Q ss_pred ccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 211 TKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
||+|+........+.........+.+++.+++.++.+++..+..+
T Consensus 117 NK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l 161 (215)
T cd04109 117 NKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQL 161 (215)
T ss_pred ECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 999997433211111111111233457777777766665544433
No 87
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.37 E-value=4.2e-12 Score=137.61 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=101.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+|.|+++|.+|+|||||+|+|+|..+ ..+...|...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT-------------------------------------- 310 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVT-------------------------------------- 310 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCee--------------------------------------
Confidence 467899999999999999999999764 2222222111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.+.+...... +...+.+|||||+.... ..+...+.+.+..|+..+|++|+|++... .+ +...
T Consensus 311 ----------~d~~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~iL~VvDa~~-~~-~~~d 372 (712)
T PRK09518 311 ----------RDRVSYDAEW-AGTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLADAVVFVVDGQV-GL-TSTD 372 (712)
T ss_pred ----------EEEEEEEEEE-CCEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHH
Confidence 1111111111 22468999999987432 23666777888899999999999987543 33 2333
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCC-eEEEEeCChhhhhccCCHHHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~ 257 (449)
..++..+...+.++++|+||+|+........+.. .++++ .+.+++..+.++..+...+..
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHH
Confidence 4566667777899999999999875432222221 12222 346777777777666554443
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=4.1e-12 Score=112.88 Aligned_cols=121 Identities=18% Similarity=0.259 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.++.|+++|.+++|||||++++++..+.|......+......
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 47 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK-------------------------------------- 47 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEE--------------------------------------
Confidence 468999999999999999999997655322111000000000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--ch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~ 190 (449)
.+.+. .....+.++|+||.... ......|+..+|+++++++..+.+.. ..
T Consensus 48 --------------~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (169)
T cd04114 48 --------------TVEIK-GEKIKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLP 99 (169)
T ss_pred --------------EEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 01111 11235789999996542 44567789999999999875532211 01
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.++..++.+...+.+.++|.||+|+..+.
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 22333344455568889999999986543
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.37 E-value=4.5e-12 Score=111.80 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=84.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|.+++|||||+|++++..+.+.. .+.+.......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~---------------------------------------- 41 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQ---------------------------------------- 41 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEE----------------------------------------
Confidence 6899999999999999999998864311 11111000000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
.+.+. .....+.++|+||... ...+...|++++|++|+|+++.+.+. -.....+
T Consensus 42 -----------~v~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~ 95 (163)
T cd01860 42 -----------TVNLD-DTTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEES-FEKAKSW 95 (163)
T ss_pred -----------EEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHHH-HHHHHHH
Confidence 01111 1123578999999543 24556778999999999987664321 1122222
Q ss_pred ---HHHhCCCCCceEEEeccccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 196 ---SREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 196 ---~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
++.......+.++|+||+|+..... ...+ ...........|+.+++..+.++...
T Consensus 96 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 96 VKELQRNASPNIIIALVGNKADLESKRQVSTEE-AQEYADENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred HHHHHHhCCCCCeEEEEEECccccccCcCCHHH-HHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 2223334577999999999874322 1111 11111122355777777665555443
No 90
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.37 E-value=1.3e-11 Score=118.41 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
....+|+|+|.+|+||||++|+|+|.....++.- .+|..++...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------------------------------- 80 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------------------------------- 80 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-----------------------------------
Confidence 3667999999999999999999999875333221 1222221111
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcc-
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDL- 187 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~- 187 (449)
...+...+++|||||+.+.. ...+...+.++.|+. .+|++++|........
T Consensus 81 --------------------~~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~ 134 (313)
T TIGR00991 81 --------------------RTRAGFTLNIIDTPGLIEGG------YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVD 134 (313)
T ss_pred --------------------EEECCeEEEEEECCCCCchH------HHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCC
Confidence 00133578999999998742 234444566666664 5888877743221122
Q ss_pred -cchHHHHHHHHhC--CCCCceEEEeccccccCCC
Q 013120 188 -ATSDAIKISREVD--PTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 188 -~~~~~~~l~~~~~--~~~~rti~VltK~D~~~~~ 219 (449)
.....++..+..- .-..++|+|+|+.|..+++
T Consensus 135 ~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 135 TLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 2233444444332 1246899999999988653
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.37 E-value=5.7e-12 Score=111.72 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~----~~~~~rti~Vl 210 (449)
...+.++||||.... ..+...++..+|++++|+++.+.+. ..........+ ...+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~v~vvd~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQESL-------------RSLWDKYYAECHAIIYVIDSTDRER-FEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECchHHH-HHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 457899999998652 4567788999999999987654321 11122222221 22478999999
Q ss_pred ccccccCCCC--cHHHHHcCcccc---cCCCeEEEEeCChhhhhc
Q 013120 211 TKIDLMDKGT--DAADILEGKSYR---LKFPWIGVVNRSQADINK 250 (449)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~~~---l~~g~~~v~~~s~~~~~~ 250 (449)
||+|+..... +..+.+...... ....++.+++.++.+++.
T Consensus 115 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 115 NKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred EccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHH
Confidence 9999865432 222333221111 122456666666555543
No 92
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.37 E-value=6.5e-12 Score=110.52 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHHhC---CCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVD---PTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~-l~~~~~---~~~~rti~Vl 210 (449)
...+.++||||.... ..+...|+.++|++|+|++..+.. .-..... +...+. ..+.++++|+
T Consensus 43 ~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~iv~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~ 108 (160)
T cd04156 43 HLSLTVWDVGGQEKM-------------RTVWKCYLENTDGLVYVVDSSDEA-RLDESQKELKHILKNEHIKGVPVVLLA 108 (160)
T ss_pred ceEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCcHH-HHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence 346899999997642 455678899999999998755432 1112222 222111 2478999999
Q ss_pred ccccccC
Q 013120 211 TKIDLMD 217 (449)
Q Consensus 211 tK~D~~~ 217 (449)
||+|+..
T Consensus 109 nK~Dl~~ 115 (160)
T cd04156 109 NKQDLPG 115 (160)
T ss_pred ECccccc
Confidence 9999864
No 93
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=3.7e-12 Score=117.91 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=63.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHH----HhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR----EVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~----~~~~~~~rti~Vlt 211 (449)
..+.++||||.... ..+...|++++|++|+|++..+..- -.....+.. ...+...+.++|.|
T Consensus 52 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~S-f~~l~~~~~~i~~~~~~~~~~iilvgN 117 (211)
T cd04111 52 IKLQLWDTAGQERF-------------RSITRSYYRNSVGVLLVFDITNRES-FEHVHDWLEEARSHIQPHRPVFILVGH 117 (211)
T ss_pred EEEEEEeCCcchhH-------------HHHHHHHhcCCcEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 35889999996542 4567889999999999987654211 111112222 22344556788999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|.|+........+.........+.+|+.+++.++.+++..+..+..
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred ccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9998754321111111111233467888877777666655554443
No 94
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=7.4e-12 Score=110.41 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred EEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 140 LIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 140 lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
+|||||...... ...+. ...+++.+|++|++++..+.+..... .+.. +. .+.+.++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~~--------~~~~~-~~~~~~~ad~il~v~d~~~~~s~~~~--~~~~-~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHA-LITTLQDVDMLIYVHGANDPESRLPA--GLLD-IG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCH--------HHHHH-HHHHHhcCCEEEEEEeCCCcccccCH--HHHh-cc-CCCCeEEEEEccccCccc
Confidence 699999865321 11222 34558899999999876543322111 1222 22 357899999999985422
Q ss_pred Cc-HHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 220 TD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 220 ~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
.+ +.+.+.. .....+++.++.+++++++.+...+.
T Consensus 108 ~~~~~~~~~~--~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 108 VAATRKLLLE--TGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred HHHHHHHHHH--cCCCCCEEEEECCCccCHHHHHHHHH
Confidence 11 1222221 22235788899888887776655443
No 95
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.36 E-value=3.9e-12 Score=116.72 Aligned_cols=104 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||..+. +.+...|++++|++|+|++..+.+-.. ..++..++.....+.++++|.||+
T Consensus 49 v~l~iwDtaGqe~~-------------~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred EEEEEEeCCCchhh-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 46899999997653 567889999999999998765432111 122334444445578999999999
Q ss_pred cccCCCCcHHHHHcCcccc-cCCCeEEEEeCChhhhhccC
Q 013120 214 DLMDKGTDAADILEGKSYR-LKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+........+........ .+..|+.+++.++.+++..+
T Consensus 116 DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 116 DCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 9864322111111100001 13456777776666555444
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.36 E-value=3.4e-12 Score=114.75 Aligned_cols=102 Identities=13% Similarity=0.209 Sum_probs=58.6
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhC----CCCCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD----PTGERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~----~~~~rti~VltK 212 (449)
.+.|+||||... ...+...|++++|++|+|++..+.+ .-.....+...+. ..+.++++|.||
T Consensus 64 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 64 HLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTNEQ-SFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEeCCChHH-------------HHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 578999999543 2566788999999999998755321 1111112222221 235689999999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
+|+........+.........+..|+.+++.+..+++...
T Consensus 130 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 130 ADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAV 169 (180)
T ss_pred ccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9987532211111111111233457777776665554443
No 97
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.36 E-value=2.1e-12 Score=119.55 Aligned_cols=132 Identities=25% Similarity=0.373 Sum_probs=74.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccC--cccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGS--GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~--~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+|+++|..+|||||++|+|+|.+.++.+. ..||.......-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-------------------------------------
Confidence 79999999999999999999999888764 245554422110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
.-+...+++|||||+.+.... ++++...+.+.+......++++|||+. .. .+.. ..
T Consensus 45 ------------------~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llVi~-~~-r~t~~~~~ 102 (212)
T PF04548_consen 45 ------------------EVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLVIP-LG-RFTEEDRE 102 (212)
T ss_dssp ------------------EETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEEEE-TT-B-SHHHHH
T ss_pred ------------------eecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEEEe-cC-cchHHHHH
Confidence 112356899999999775432 122222333322233456889888764 43 4443 23
Q ss_pred HHHHHHHh-CC-CCCceEEEeccccccCCCCcHHHHHc
Q 013120 192 AIKISREV-DP-TGERTFGVLTKIDLMDKGTDAADILE 227 (449)
Q Consensus 192 ~~~l~~~~-~~-~~~rti~VltK~D~~~~~~~~~~~l~ 227 (449)
.++.+..+ .+ ..+.+|+|+|..|...+.. +.++++
T Consensus 103 ~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~ 139 (212)
T PF04548_consen 103 VLELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLK 139 (212)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHH
T ss_pred HHHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHh
Confidence 33333333 22 2468999999999887654 433433
No 98
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.36 E-value=3.7e-12 Score=113.79 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=86.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|++++|||||++++++..| +....++.... .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~--~----------------------------------------- 37 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVD--F----------------------------------------- 37 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeE--E-----------------------------------------
Confidence 689999999999999999999875 22211111000 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
....+.+.+ ....+.|+||||..+. ..+...|++++|++|+|++..+.+.. .....+
T Consensus 38 --------~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~-~~~~~~ 94 (170)
T cd04108 38 --------EMERFEILG-VPFSLQLWDTAGQERF-------------KCIASTYYRGAQAIIIVFDLTDVASL-EHTRQW 94 (170)
T ss_pred --------EEEEEEECC-EEEEEEEEeCCChHHH-------------HhhHHHHhcCCCEEEEEEECcCHHHH-HHHHHH
Confidence 000111111 1246899999998653 45678889999999999876442111 111222
Q ss_pred HH----HhCCCCCceEEEeccccccCCCC-c-HHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 196 SR----EVDPTGERTFGVLTKIDLMDKGT-D-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 196 ~~----~~~~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.. ...+...++++|.||.|+.+... . ..+........++..|+.+++.++.+++.....+
T Consensus 95 ~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 95 LEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred HHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 22 22343456899999999864322 1 1111111112233456777766666555444433
No 99
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.36 E-value=5.6e-12 Score=111.82 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhC---CCCCceEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVD---PTGERTFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~---~~~~rti~Vl 210 (449)
..+.++||||.... ..+...|++.+|++|+|++..+.... ....+..++... ....|.++|.
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 49 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred EEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 45889999998763 34567788999999998875543211 112223333332 2467999999
Q ss_pred ccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 211 TKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
||+|+........+.........+.+|+.+++..+.+++...
T Consensus 116 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 116 NKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred ECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Confidence 999996532211111111112234567888887776665544
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.35 E-value=5.6e-12 Score=112.77 Aligned_cols=146 Identities=16% Similarity=0.237 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-++|+++|.+++|||||+++|++..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 346899999999999999999998743 11 0110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.++.... +.+ +...+.++||||.... +.+...|++++|++|+|++..+.+.. ...
T Consensus 46 ------~g~~~~~--~~~---~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~ 100 (173)
T cd04154 46 ------LGFQIKT--LEY---EGYKLNIWDVGGQKTL-------------RPYWRNYFESTDALIWVVDSSDRLRL-DDC 100 (173)
T ss_pred ------cccceEE--EEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCCHHHH-HHH
Confidence 0011111 111 1346899999997542 45678899999999999876543211 111
Q ss_pred HH----HHHHhCCCCCceEEEeccccccCCCC--cHHHHHcCcc-cccCCCeEEEEeCChhhhhc
Q 013120 193 IK----ISREVDPTGERTFGVLTKIDLMDKGT--DAADILEGKS-YRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 193 ~~----l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~~~~ 250 (449)
.. +.+.....+.+.++|+||+|+..... +..+.+.... ......|+.+++.++.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 101 KRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 11 11111224689999999999875432 2223332111 11223466666666655544
No 101
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.35 E-value=8.4e-12 Score=112.96 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-+.|+++|.+|||||||+++++|..+-. ..+|..|+...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~------------------------------------- 55 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEE------------------------------------- 55 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEE-------------------------------------
Confidence 34789999999999999999999976411 11233231111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+.+ ....+.++||||.... +.+...|+.++|++|+|++..+.+-.....
T Consensus 56 ---------------~~~---~~~~~~~~D~~G~~~~-------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 56 ---------------LAI---GNIKFTTFDLGGHQQA-------------RRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred ---------------EEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 001 2346889999998652 556778999999999999865432111111
Q ss_pred HHHHHHhC---CCCCceEEEeccccccC
Q 013120 193 IKISREVD---PTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~~---~~~~rti~VltK~D~~~ 217 (449)
..+.+.+. ..+.++++|+||.|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 11222222 24689999999999853
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.35 E-value=6.8e-12 Score=110.25 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=59.0
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEecccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.+.++|+||.... ..+...|+.++|+++++++..+.+... ...+..++...+...++++|+||+|
T Consensus 50 ~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 116 (162)
T cd04123 50 DLAIWDTAGQERY-------------HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116 (162)
T ss_pred EEEEEECCchHHH-------------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 5889999995432 455667889999999998765433211 1111222333444679999999999
Q ss_pred ccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 215 LMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
+........+.+.......+..++.+..+...+++...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 87433211111111112234456667766665554433
No 103
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=5.5e-12 Score=115.78 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=58.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh-------CCCCCceEE
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-------DPTGERTFG 208 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~-------~~~~~rti~ 208 (449)
..+.|+||||.... +.+...|+++++++|+|++..+.+. -.....+...+ .....|+++
T Consensus 50 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~D~t~~~s-~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQERF-------------GGMTRVYYRGAVGAIIVFDVTRPST-FEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCchhh-------------hhhHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 45889999997542 5667889999999999997543211 11111111111 124578999
Q ss_pred EeccccccCCCC----cHHHHHcCcccccC-CCeEEEEeCChhhhhccCC
Q 013120 209 VLTKIDLMDKGT----DAADILEGKSYRLK-FPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 209 VltK~D~~~~~~----~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~ 253 (449)
|.||.|+.+... +..++.+ ..+ .+|+.++...+.+++....
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCK----ENGFIGWFETSAKEGINIEEAMR 161 (201)
T ss_pred EEECCCcccccccCHHHHHHHHH----HcCCceEEEEeCCCCCCHHHHHH
Confidence 999999974221 1122221 122 3567777666555544433
No 104
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.35 E-value=7.4e-12 Score=113.87 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhC---CCCCceEEEec
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD---PTGERTFGVLT 211 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~---~~~~rti~Vlt 211 (449)
.+.|+||||..+. ..+...|++.+|++|+|++..+..... ...+..+.... +...++++|.|
T Consensus 48 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 48 MLEVLDTAGQEEY-------------TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred EEEEEECCCchhh-------------HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 5889999996542 456778999999999998754422111 12222223222 24679999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|+|+........+.........+..|+.+++..+.+++..+..+..
T Consensus 115 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 115 KCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred ChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9998643221111111111123345777777777666655554443
No 105
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.34 E-value=1.3e-11 Score=107.66 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh---CCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV---DPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~---~~~~~rti~VltK 212 (449)
..+.++||||.... +.+...|++.+|+++++++....+........+.... ...+.|.++|+||
T Consensus 44 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 110 (159)
T cd04159 44 VTLKVWDLGGQPRF-------------RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 46899999997542 5567788999999999886543221111111122222 1246799999999
Q ss_pred ccccCCC
Q 013120 213 IDLMDKG 219 (449)
Q Consensus 213 ~D~~~~~ 219 (449)
+|+....
T Consensus 111 ~D~~~~~ 117 (159)
T cd04159 111 NDLPGAL 117 (159)
T ss_pred ccccCCc
Confidence 9987543
No 106
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.34 E-value=6.5e-12 Score=115.16 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=88.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
...|+|+|+.|+|||||++++.+..+-+ .. .+|..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~------------------------------------------- 40 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG------------------------------------------- 40 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc-------------------------------------------
Confidence 4689999999999999999999876511 11 11100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
+......+.+. .....+.|+||||.... ..+...|+++++++|+|++..+..- .....
T Consensus 41 -------~~~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~a~~iilv~D~~~~~s-~~~~~ 98 (199)
T cd04110 41 -------VDFKIRTVEIN-GERVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGES-FVNVK 98 (199)
T ss_pred -------ceeEEEEEEEC-CEEEEEEEEeCCCchhH-------------HHHHHHHhCCCcEEEEEEECCCHHH-HHHHH
Confidence 00000011111 12235889999996442 4567889999999999988654321 11222
Q ss_pred HHHHHhC--CCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 194 KISREVD--PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 194 ~l~~~~~--~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
.+...+. ....+.++|.||+|+........+.........+..|+.++...+.++..++..+.
T Consensus 99 ~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 99 RWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred HHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 2222222 22568899999999875432111111111112335577777776666655544433
No 107
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.34 E-value=7.7e-12 Score=107.92 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=52.7
Q ss_pred EEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 139 TLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 139 ~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+|||||.... .....+.+. .+++++|++|+|++..+...... ..+.... ..+.++|+||+|+.+.
T Consensus 38 ~~iDt~G~~~~--------~~~~~~~~~-~~~~~ad~vilv~d~~~~~s~~~--~~~~~~~---~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 38 GAIDTPGEYVE--------NRRLYSALI-VTAADADVIALVQSATDPESRFP--PGFASIF---VKPVIGLVTKIDLAEA 103 (142)
T ss_pred eeecCchhhhh--------hHHHHHHHH-HHhhcCCEEEEEecCCCCCcCCC--hhHHHhc---cCCeEEEEEeeccCCc
Confidence 68999997421 112233333 45899999999987544332111 2233322 3499999999998753
Q ss_pred CCcH---HHHHcCcccccC-CCeEEEEeCChhhhhc
Q 013120 219 GTDA---ADILEGKSYRLK-FPWIGVVNRSQADINK 250 (449)
Q Consensus 219 ~~~~---~~~l~~~~~~l~-~g~~~v~~~s~~~~~~ 250 (449)
.... .+..+ ..+ .+++.++..++.+++.
T Consensus 104 ~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 104 DVDIERAKELLE----TAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred ccCHHHHHHHHH----HcCCCcEEEEecCCCCCHHH
Confidence 2211 12221 112 2567777776665543
No 108
>PLN03118 Rab family protein; Provisional
Probab=99.34 E-value=1e-11 Score=114.96 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=63.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHHhCC-CCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREVDP-TGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~---~~~l~~~~~~-~~~rti~Vlt 211 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+-.... +........+ .+.+.++|.|
T Consensus 62 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~N 128 (211)
T PLN03118 62 LKLTIWDTAGQERF-------------RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128 (211)
T ss_pred EEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 35889999997653 45577899999999999976543211110 1112222222 3568899999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
|+|+........+.........+..|+.+.+..+.+++..+..+...
T Consensus 129 K~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred CccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99987433211111111111223457777777776666655544433
No 109
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=1.4e-11 Score=111.87 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=62.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...+++++|++|++++..+.+-.. ..++...+...+...+.++|.||.
T Consensus 49 ~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~ 115 (188)
T cd04125 49 IKLQIWDTNGQERF-------------RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKS 115 (188)
T ss_pred EEEEEEECCCcHHH-------------HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 35789999996542 456788899999999999765432111 112222333334457899999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
|+........+.........+..|+.+.+..+.+++.....+
T Consensus 116 Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 116 DLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred CCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 987432110111111111234467788777766665554443
No 110
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.33 E-value=8.6e-12 Score=110.18 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=57.3
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH---HHH-hCCCCCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI---SRE-VDPTGERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l---~~~-~~~~~~rti~VltK 212 (449)
.+.|+||||..+. ..+...|++++|++|+|++..+..- -.+...+ +.. ....+.|+++|.||
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piviv~nK 115 (163)
T cd04176 50 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVYSLVNQQT-FQDIKPMRDQIVRVKGYEKVPIILVGNK 115 (163)
T ss_pred EEEEEECCCcccc-------------cchHHHHHhhCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5789999997553 3456678999999999887554321 1111112 222 22357899999999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
+|+..................+.+|+.++.+++.+++..
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 116 VDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNEL 154 (163)
T ss_pred ccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 998643221111011111122345666666665555443
No 111
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.32 E-value=1.4e-11 Score=110.23 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=61.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHh-CCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~-~~~~~rti~VltK 212 (449)
..+.|+||||.... +.+...|+..+|++|+|++..+.+-.. .+....+... ...+.|+++|.||
T Consensus 50 ~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 50 ALLDILDTAGQAEF-------------TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred EEEEEEeCCCchhh-------------HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 35889999997653 567788999999999998765432111 1112233333 2346899999999
Q ss_pred ccccCCCC----cHHHHHcCcccccCCCeEEEEeCChhhhhccCC
Q 013120 213 IDLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 213 ~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
+|+..... +..++. ...+..|+.+++..+.+++..+.
T Consensus 117 ~Dl~~~~~v~~~~~~~~a----~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 117 VDLESQRQVTTEEGRNLA----REFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred hhhhhcCccCHHHHHHHH----HHhCCEEEEEecCCCCCHHHHHH
Confidence 99864321 111111 12345677777776666554443
No 112
>PTZ00369 Ras-like protein; Provisional
Probab=99.32 E-value=1.4e-11 Score=111.96 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=45.1
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHH-HHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK-ISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~-l~~~~~~~~~rti~VltK~ 213 (449)
.+.|+||||..+. ..+...|++.+|++|+|++..+.+... ..... +.+.....+.++++|.||+
T Consensus 54 ~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 54 LLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5789999997663 456778999999999998765432111 11111 2222223367899999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 121 Dl~~ 124 (189)
T PTZ00369 121 DLDS 124 (189)
T ss_pred cccc
Confidence 9854
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.32 E-value=1.5e-11 Score=109.54 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHH-HhC---CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR-EVD---PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~-~~~---~~~~rti~Vlt 211 (449)
..+.++||||.... +.+...|++.+|++|+|++..+..-. .+...... .+. ..+.++++|.|
T Consensus 43 ~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~s~~~s~-~~~~~~~~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 43 LKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVVDSSHRDRV-SEAHSELAKLLTEKELRDALLLIFAN 108 (169)
T ss_pred EEEEEEECCCChhc-------------chHHHHHhccCCEEEEEEeCCcHHHH-HHHHHHHHHHhcChhhCCCCEEEEEe
Confidence 46899999998653 45677889999999999976543211 11222222 222 22478999999
Q ss_pred cccccCCCC--cHHHHHcCcccccCC--CeEEEEeCChhhhhccCCHHH
Q 013120 212 KIDLMDKGT--DAADILEGKSYRLKF--PWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 212 K~D~~~~~~--~~~~~l~~~~~~l~~--g~~~v~~~s~~~~~~~~~~~~ 256 (449)
|.|+.+..+ +..+++.......+. .++.++++++.+++..+.++.
T Consensus 109 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 109 KQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred CcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence 999865322 122333211111111 233456666666665555443
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.32 E-value=8.2e-12 Score=109.49 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=85.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|.+++|||||++++++..+ +....+++......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~----------------------------------------- 38 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRK----------------------------------------- 38 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEE-----------------------------------------
Confidence 489999999999999999998763 33322222211000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~ 193 (449)
...+ ......+.++|+||.... ..+...+++.+|++|++++..+.+... ....
T Consensus 39 -----------~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 93 (160)
T cd00876 39 -----------TIVV-DGETYTLDILDTAGQEEF-------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYR 93 (160)
T ss_pred -----------EEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0001 111235789999997652 455667889999999998765532111 1111
Q ss_pred HHHHHhCC-CCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 194 KISREVDP-TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 194 ~l~~~~~~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
.......+ .+.++++|+||+|+........+...........+++.++.+...+++.
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDE 151 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHH
Confidence 12222222 4789999999999986322111111111122235677777666555443
No 115
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=7.5e-12 Score=123.03 Aligned_cols=128 Identities=29% Similarity=0.453 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCC-----CCcccCcccccccEEEEEE
Q 013120 3 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKD-----FLPRGSGIVTRRPLVLQLH 77 (449)
Q Consensus 3 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~-----~lP~~~~~~Tr~p~~i~l~ 77 (449)
.+-....++++.+..+... . -.|+|+|+.|+|||||||||-|.. .-|+|...+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~~~~-----------~-l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~------ 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDNA-----------P-LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP------ 77 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-------
T ss_pred CHHHHHHHHHHHHHHhhcC-----------c-eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC------
Confidence 3445667777777666542 2 289999999999999999998853 1222222223322
Q ss_pred ecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCc
Q 013120 78 KLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDS 157 (449)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~ 157 (449)
-.+..|..|+++|||+||+......
T Consensus 78 --------------------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~f~----- 102 (376)
T PF05049_consen 78 --------------------------------------------------TPYPHPKFPNVTLWDLPGIGTPNFP----- 102 (376)
T ss_dssp --------------------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------
T ss_pred --------------------------------------------------eeCCCCCCCCCeEEeCCCCCCCCCC-----
Confidence 1256688899999999999764322
Q ss_pred hHHHHHHHHHHHh-----cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 158 IVQDIENMVRSYI-----EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 158 ~~~~~~~~~~~yi-----~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
...|+ ..-|.+|++. + ..+ ......+++.+...+++..+|-||+|.
T Consensus 103 --------~~~Yl~~~~~~~yD~fiii~--s-~rf-~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 --------PEEYLKEVKFYRYDFFIIIS--S-ERF-TENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp --------HHHHHHHTTGGG-SEEEEEE--S-SS---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred --------HHHHHHHccccccCEEEEEe--C-CCC-chhhHHHHHHHHHcCCcEEEEEecccc
Confidence 44554 4678776654 2 223 344556899999999999999999996
No 116
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.31 E-value=2.4e-11 Score=106.68 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=47.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HH-HHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DA-IKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~~-~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...++..+|++++|+++.+.+.... .. ..+.+.....+.++++|+||
T Consensus 43 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 43 VSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 46899999997653 4557788999999999988765421111 11 11222223457899999999
Q ss_pred ccccCCC
Q 013120 213 IDLMDKG 219 (449)
Q Consensus 213 ~D~~~~~ 219 (449)
+|+....
T Consensus 110 ~D~~~~~ 116 (158)
T cd00878 110 QDLPGAL 116 (158)
T ss_pred cCCcccc
Confidence 9987543
No 117
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.31 E-value=1.3e-11 Score=109.12 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...|++++|++|+|++..+..... ..++..++...+ ..+.++|+||+
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~ 114 (161)
T cd04124 49 ILVDFWDTAGQERF-------------QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKI 114 (161)
T ss_pred EEEEEEeCCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECc
Confidence 35789999996542 556788999999999999755422111 112222233222 57999999999
Q ss_pred cccCCCCc-HHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 214 DLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 214 D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
|+...... ...+. ......++.+++..+.+++..
T Consensus 115 Dl~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 115 DLDPSVTQKKFNFA----EKHNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred cCchhHHHHHHHHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 98432111 11111 112334666666655555443
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.31 E-value=1.3e-11 Score=108.62 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||..+. +.+...|+..+|++|++++..+..... .....+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQTSI-------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 46899999998652 566788999999999998755421111 11111222222236899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 998743
No 119
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.31 E-value=2.1e-11 Score=107.32 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH---HHH-HHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI---KIS-REVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~---~l~-~~~~~~~~rti~Vlt 211 (449)
..+.++||||.... ..+...+++.+|++|++++..+.. .-.... ..+ +.....+.+.++|.|
T Consensus 49 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 49 VKLAIWDTAGQERF-------------RTLTSSYYRGAQGVILVYDVTRRD-TFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHH-HHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 46899999996542 444677889999999998754321 111111 212 222345788999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
|+|+........+.... ....+..++.++...+.+++.
T Consensus 115 K~D~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 115 KIDKENREVTREEGLKF-ARKHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred CCcccccccCHHHHHHH-HHHcCCEEEEEecCCCCCHHH
Confidence 99997443322222111 112344567666665554443
No 120
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.30 E-value=1.4e-11 Score=104.81 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=53.8
Q ss_pred EEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 139 TLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 139 ~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+|||||=+--. ............++|.|+++.++......-+.. ++.. ...|+|||+||+|+...
T Consensus 39 ~~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~--fa~~---f~~pvIGVITK~Dl~~~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPG--FASM---FNKPVIGVITKIDLPSD 104 (143)
T ss_pred cEEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCch--hhcc---cCCCEEEEEECccCccc
Confidence 359999954311 112333445556899998887655432222232 2332 35899999999999844
Q ss_pred CCcH---HHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 219 GTDA---ADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 219 ~~~~---~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
..+. .+.|+.... ...|.++..++++++.+.
T Consensus 105 ~~~i~~a~~~L~~aG~---~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 105 DANIERAKKWLKNAGV---KEIFEVSAVTGEGIEELK 138 (143)
T ss_pred hhhHHHHHHHHHHcCC---CCeEEEECCCCcCHHHHH
Confidence 3332 333432111 123566666666555443
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.30 E-value=3.5e-11 Score=109.25 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-++|+++|.+|||||||+++|.+..+. ...+|..|...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~-------------------------------------- 56 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSE-------------------------------------- 56 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceE--------------------------------------
Confidence 4578999999999999999999987641 11223222111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.+.+ +...+.++|+||.... +.+...|+..+|++|+|++..+........
T Consensus 57 --------------~i~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~ 106 (190)
T cd00879 57 --------------ELTI---GNIKFKTFDLGGHEQA-------------RRLWKDYFPEVDGIVFLVDAADPERFQESK 106 (190)
T ss_pred --------------EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHH
Confidence 1111 1235789999996442 456778999999999998765432111111
Q ss_pred HHHHHHh---CCCCCceEEEeccccccC
Q 013120 193 IKISREV---DPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~---~~~~~rti~VltK~D~~~ 217 (449)
..+...+ ...+.|.++|+||+|+..
T Consensus 107 ~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 107 EELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 1122222 234689999999999864
No 122
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.30 E-value=1.6e-11 Score=109.48 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh-C---CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~-~---~~~~rti~Vlt 211 (449)
..+.++||||..+. +.+...|++++|++|+|++..+... -......+.++ . ..+.+.++|.|
T Consensus 53 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~a~~ii~v~D~t~~~s-~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 VKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDSADRDR-IDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEeCCchhh-HHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 45899999998652 4567789999999999998665321 12222222222 2 13579999999
Q ss_pred cccccCCCC--cHHHHHcCccc-ccCCCeEEEEeCChhhhhccC
Q 013120 212 KIDLMDKGT--DAADILEGKSY-RLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 212 K~D~~~~~~--~~~~~l~~~~~-~l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+|+..... ++.+.+..... .....++.+++.++.+++..+
T Consensus 119 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 119 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred CcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 999864322 22332221111 111234556666666554433
No 123
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.30 E-value=1.7e-11 Score=108.09 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=51.6
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCC---CeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.++++||||+..... +.+..+....+...|+... +.++++++... . .+.....+.+.+...+.++++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~-~~~~~~~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRH-G-PTEIDLEMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc-C-CCHhHHHHHHHHHHcCCCEEEEEEch
Confidence 789999999876532 2334556677778887654 45555554332 2 23344445666666678999999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|++.++
T Consensus 121 D~~~~~ 126 (170)
T cd01876 121 DKLKKS 126 (170)
T ss_pred hcCChH
Confidence 997654
No 124
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.30 E-value=1.2e-11 Score=110.71 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHHhC---CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVD---PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~-l~~~~~---~~~~rti~Vlt 211 (449)
..+.++||||.... ..+...|++.+|++|+|++..+.+-. ..... +.+.+. ....+.++|+|
T Consensus 59 ~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~V~D~s~~~~~-~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 59 IRFLMWDIGGQESL-------------RSSWNTYYTNTDAVILVIDSTDRERL-PLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred eEEEEEECCCCHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHH-HHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 46899999997642 45567889999999999976543211 11111 222222 23579999999
Q ss_pred cccccC
Q 013120 212 KIDLMD 217 (449)
Q Consensus 212 K~D~~~ 217 (449)
|+|+..
T Consensus 125 K~Dl~~ 130 (174)
T cd04153 125 KQDLKG 130 (174)
T ss_pred CCCCCC
Confidence 999865
No 125
>PLN03110 Rab GTPase; Provisional
Probab=99.30 E-value=2.3e-11 Score=113.06 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=86.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.-.|+++|++++|||||+++|++..+. .... .|- .+.+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~-~t~---g~~~------------------------------------- 49 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESK-STI---GVEF------------------------------------- 49 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCC-Cce---eEEE-------------------------------------
Confidence 348999999999999999999987652 1111 110 0000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
.. ..+.+. .....+.|+||||.... ..+...|++.++++|+|++..+..... ..
T Consensus 50 --------~~--~~v~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 50 --------AT--RTLQVE-GKTVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred --------EE--EEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 00 011111 12246889999996542 566788999999999998755432111 22
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhh
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (449)
++..++...+.+.+.++|.||+|+........+...........+|+.+....+.+++
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVE 163 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 3334444445578999999999985432111111111111234556666665554443
No 126
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.30 E-value=2.1e-11 Score=108.43 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHHHHHH-hCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISRE-VDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~l~~~-~~~~~~rti~VltK 212 (449)
..+.++||||..+. ..+...|++.++.+|++++..+.... . ......... ....+.|.++|.||
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 36789999997654 45677888999999888865442111 1 111222222 23447899999999
Q ss_pred ccccCCCCcHHHHHcCcccccC-CCeEEEEeCChhhhhc
Q 013120 213 IDLMDKGTDAADILEGKSYRLK-FPWIGVVNRSQADINK 250 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~ 250 (449)
.|+........+.........+ .+|+.+++.++.+++.
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred hhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 9987543211111111111222 4577777766665543
No 127
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.30 E-value=1.8e-11 Score=108.65 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ......+++.+|++++|++..+.+.... .+...++...+ +.++++|.||
T Consensus 47 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK 112 (166)
T cd01893 47 VPTTIVDTSSRPQD-------------RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNK 112 (166)
T ss_pred EEEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 46889999997653 3446677899999999886544221111 12233444444 7899999999
Q ss_pred ccccCCC
Q 013120 213 IDLMDKG 219 (449)
Q Consensus 213 ~D~~~~~ 219 (449)
+|+.+..
T Consensus 113 ~Dl~~~~ 119 (166)
T cd01893 113 SDLRDGS 119 (166)
T ss_pred hhccccc
Confidence 9997543
No 128
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.29 E-value=2.5e-11 Score=108.07 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=83.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.-+|+|+|.+++|||||++++++..+-+......+. ..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~-----~~------------------------------------- 42 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----EF------------------------------------- 42 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceee-----EE-------------------------------------
Confidence 358999999999999999999987763321111000 00
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~-~~ 191 (449)
. ...+.+ ......+.|+||||..+. +.+...|++.+|++|++++..+.+ +.. ..
T Consensus 43 --------~--~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (170)
T cd04116 43 --------L--NKDLEV-DGHFVTLQIWDTAGQERF-------------RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSN 98 (170)
T ss_pred --------E--EEEEEE-CCeEEEEEEEeCCChHHH-------------HHhHHHHhcCCCEEEEEEECCCHHHHHhHHH
Confidence 0 000111 112235789999996442 567778999999998887644332 111 11
Q ss_pred HHH-HHHHhC---CCCCceEEEeccccccCCCCc---HHHHHcCcccccC-CCeEEEEeCChhhhhc
Q 013120 192 AIK-ISREVD---PTGERTFGVLTKIDLMDKGTD---AADILEGKSYRLK-FPWIGVVNRSQADINK 250 (449)
Q Consensus 192 ~~~-l~~~~~---~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~ 250 (449)
... +..... +.+.|.++|.||.|+...... ..++.+ .++ ..|+.+++..+.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 99 WKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred HHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHH
Confidence 111 122221 346789999999998643211 222222 122 3567777766555443
No 129
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.29 E-value=2e-11 Score=111.22 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=58.8
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC--CCCceEEEecccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--TGERTFGVLTKID 214 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~--~~~rti~VltK~D 214 (449)
.+.++||||.... ..+...|+.++|++|+|++..+.... .....+...+.. .+.++++|.||+|
T Consensus 51 ~l~i~D~~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~piilv~nK~D 116 (193)
T cd04118 51 TLGIWDTAGSERY-------------EAMSRIYYRGAKAAIVCYDLTDSSSF-ERAKFWVKELQNLEEHCKIYLCGTKSD 116 (193)
T ss_pred EEEEEECCCchhh-------------hhhhHhhcCCCCEEEEEEECCCHHHH-HHHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 4789999997543 44566788999999999875432111 111123333322 2679999999999
Q ss_pred ccCCCCcH----HHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 215 LMDKGTDA----ADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 215 ~~~~~~~~----~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
+....... ...+.......+..++.+++.+..+++.+...+.
T Consensus 117 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 117 LIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred ccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 86432110 0001110112234566666666665555444433
No 130
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.29 E-value=1.7e-11 Score=109.30 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=56.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~----~~~~~rti~Vlt 211 (449)
..+.++||||..... ..+...|++++|++|+|++..+.+. .+....+...+ .....|+++|.|
T Consensus 51 ~~~~i~Dt~G~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~iiv~n 117 (170)
T cd04115 51 IKVQLWDTAGQERFR------------KSMVQHYYRNVHAVVFVYDVTNMAS-FHSLPSWIEECEQHSLPNEVPRILVGN 117 (170)
T ss_pred EEEEEEeCCChHHHH------------HhhHHHhhcCCCEEEEEEECCCHHH-HHhHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 468899999965421 2457788999999999988654321 11222222222 234689999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCC
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRS 244 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (449)
|+|+........+..+........+|+.+++.+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 118 KCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred CccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 999865432111111111122346788777765
No 131
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.29 E-value=8.3e-12 Score=110.96 Aligned_cols=69 Identities=23% Similarity=0.174 Sum_probs=44.2
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~---~~~l~~~~~~~~~rti~VltK~ 213 (449)
.+.++||||..... .+...+++.+|+++++++..+..-.... .+.......+ +.++++|.||+
T Consensus 49 ~l~~~D~~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~ 114 (171)
T cd00157 49 NLGLWDTAGQEEYD-------------RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKI 114 (171)
T ss_pred EEEEEeCCCccccc-------------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccH
Confidence 58899999977532 2234566899999999876542211111 1222222222 68999999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|+....
T Consensus 115 Dl~~~~ 120 (171)
T cd00157 115 DLRDDE 120 (171)
T ss_pred Hhhhch
Confidence 988654
No 132
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.29 E-value=3.6e-11 Score=106.97 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=48.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~----~~~~~rti~Vlt 211 (449)
..+.++|+||... .+.+...|++++|++|+|++..+.+ ...........+ ...+.+.++|+|
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 4689999999644 2567889999999999999866533 112222222222 124689999999
Q ss_pred cccccCCC
Q 013120 212 KIDLMDKG 219 (449)
Q Consensus 212 K~D~~~~~ 219 (449)
|.|+....
T Consensus 109 K~Dl~~~~ 116 (167)
T cd04161 109 KQDKKNAL 116 (167)
T ss_pred CCCCcCCC
Confidence 99986543
No 133
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.29 E-value=5.2e-11 Score=108.66 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=49.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.++||||..+. ..++..|++.+|++|+|++.... .. .....+.+.+...+.+.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~~ilV~d~~~~-~~-~~~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHADF-------------GGEVERVLSMVDGVLLLVDASEG-PM-PQTRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHhcCEEEEEEECCCC-cc-HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 356899999998653 45678899999999999876542 21 2222334444445789999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9743
No 134
>PLN03108 Rab family protein; Provisional
Probab=99.29 E-value=3.1e-11 Score=111.64 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=85.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.-.|+|+|+.++|||||++.|++..+-+....+.. .
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~------------------------------------------ 41 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--V------------------------------------------ 41 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--c------------------------------------------
Confidence 35899999999999999999998876332211000 0
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--H
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~ 191 (449)
.+ ..-.+.+.+. ...+.++||||.... ..+...|++.+|++|+|++..+...... .
T Consensus 42 ------~~--~~~~i~~~~~-~i~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~ 99 (210)
T PLN03108 42 ------EF--GARMITIDNK-PIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (210)
T ss_pred ------eE--EEEEEEECCE-EEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 00 0001111111 125789999996542 4567788999999999987654321111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCCc----HHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGTD----AADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
.+..+........++++|.||+|+...... ..++. ...+..|+.++++...+++.
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 222222333346889999999998753211 11221 12234577777766655544
No 135
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.28 E-value=2.8e-11 Score=108.84 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH----HHHHHHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA----IKISREVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~----~~l~~~~~~~~~rti~Vlt 211 (449)
..+.++||||..+. ..+...+...++++|++++..+... -+.. ..+++.....+.+.++|+|
T Consensus 49 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~N 114 (180)
T cd04137 49 YHLEIVDTAGQDEY-------------SILPQKYSIGIHGYILVYSVTSRKS-FEVVKVIYDKILDMLGKESVPIVLVGN 114 (180)
T ss_pred EEEEEEECCChHhh-------------HHHHHHHHhhCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 35789999997652 3445578889999988887554221 1111 1233333345679999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
|+|+........+.........+..++.+++++..++......+.
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 115 KSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred chhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999864332111111111122334567777777666655544443
No 136
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.27 E-value=3.1e-11 Score=110.52 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH----HHHHHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI----KISREVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~----~l~~~~~~~~~rti~Vlt 211 (449)
..+.|+||||.... ..+...|+..+|++|+|++..+.+ ...... .+.......+.++++|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYAVDDPE-SFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 36889999997653 345567899999999998754321 111111 122222335789999999
Q ss_pred cccccC
Q 013120 212 KIDLMD 217 (449)
Q Consensus 212 K~D~~~ 217 (449)
|+|+..
T Consensus 113 K~Dl~~ 118 (198)
T cd04147 113 KADSLE 118 (198)
T ss_pred cccccc
Confidence 999875
No 137
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.27 E-value=4e-11 Score=105.95 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=86.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|++++|||||++.+++..+.|... .|..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~------------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGVD------------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeeE-------------------------------------------
Confidence 68999999999999999999887633211 111110
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
.....+.+.+ ....+.++||||.... ..+...|++++|++++|++..+..- -.....+
T Consensus 37 -------~~~~~~~~~~-~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s-f~~~~~~ 94 (161)
T cd04117 37 -------FKMKTIEVDG-IKVRIQIWDTAGQERY-------------QTITKQYYRRAQGIFLVYDISSERS-YQHIMKW 94 (161)
T ss_pred -------EEEEEEEECC-EEEEEEEEeCCCcHhH-------------HhhHHHHhcCCcEEEEEEECCCHHH-HHHHHHH
Confidence 0000111111 1235789999996543 4557788999999999987554321 1111222
Q ss_pred HH---HhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 196 SR---EVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 196 ~~---~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
.. ...+...+.++|.||.|+........+.........+.+|+.+++..+.+++..
T Consensus 95 ~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 95 VSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKES 153 (161)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 22 333446789999999998654321111111111223456888877766555443
No 138
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.27 E-value=2.2e-11 Score=107.93 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=44.9
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhC--CCCCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD--PTGERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~--~~~~rti~VltK 212 (449)
.+.++||||..... ......+++.+|++|+|++..+..-.. ...+..+.... ....|.++|.||
T Consensus 48 ~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 57899999987521 223567889999999998765431110 11222333333 336889999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 116 ~Dl~~~ 121 (165)
T cd04146 116 ADLLHY 121 (165)
T ss_pred CchHHh
Confidence 998643
No 139
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.25 E-value=2.4e-11 Score=108.53 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...+++.+|++|+|++..+..-... ..+...+...+ +.++++|.||
T Consensus 46 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 35899999997653 2345568899999999987544211111 11222222223 7899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 998753
No 140
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.24 E-value=8.7e-11 Score=105.38 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=47.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh-C---CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~-~---~~~~rti~Vlt 211 (449)
..+.++||||.... +.+...|++++|++|+|++..+.+- -..+......+ . ..+.+.++|.|
T Consensus 57 ~~l~l~D~~G~~~~-------------~~~~~~~~~~ad~ii~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQDKI-------------RPLWRHYYTNTQGLIFVVDSNDRDR-IDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 46899999997653 5678889999999999998665321 12222222222 1 13578999999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|.|+.+.
T Consensus 123 K~Dl~~~ 129 (175)
T smart00177 123 KQDLPDA 129 (175)
T ss_pred CcCcccC
Confidence 9998643
No 141
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.24 E-value=4.6e-11 Score=110.33 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCC-CceEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~-~rti~VltK 212 (449)
....+.|+||||..+. ...+..++..+|++|+|++... .+. .........+...+ .++|+|+||
T Consensus 75 ~~~~~~liDTpG~~~~-------------~~~~~~~~~~ad~~llVvD~~~-~~~-~~~~~~~~~~~~~~~~~iIvviNK 139 (208)
T cd04166 75 PKRKFIIADTPGHEQY-------------TRNMVTGASTADLAILLVDARK-GVL-EQTRRHSYILSLLGIRHVVVAVNK 139 (208)
T ss_pred CCceEEEEECCcHHHH-------------HHHHHHhhhhCCEEEEEEECCC-Ccc-HhHHHHHHHHHHcCCCcEEEEEEc
Confidence 4567999999997442 1224567889999999987543 222 22222222222233 457889999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 140 ~D~~~~ 145 (208)
T cd04166 140 MDLVDY 145 (208)
T ss_pred hhcccC
Confidence 998753
No 142
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.24 E-value=1.2e-10 Score=108.52 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=62.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc-CCCeEEEEEecCCCcccc--hHHHHHHHHhC-CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE-KPNCIILAISPANQDLAT--SDAIKISREVD-PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~-~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~-~~~~rti~Vlt 211 (449)
..+.++||||.... +...++. ++|++|+|++..+..-.. ...+..+.... ..+.|+|+|.|
T Consensus 50 ~~l~i~Dt~G~~~~---------------~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N 114 (221)
T cd04148 50 STLVVIDHWEQEMW---------------TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN 114 (221)
T ss_pred EEEEEEeCCCcchH---------------HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 46899999998721 1223455 899999998765432111 11222222222 24689999999
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (449)
|+|+........+.........+..|+.+++..+.+++.++..+....
T Consensus 115 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 115 KSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999875432111111111122345688888888777776665554443
No 143
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.24 E-value=4.3e-11 Score=105.58 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh-C---CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~-~---~~~~rti~Vlt 211 (449)
..+.++||||..+. ..+...|++++|++|+|++..+.+- -..+.+....+ . ....+.++|.|
T Consensus 44 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRER-IGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 46899999998652 5567889999999999998654321 12222222222 2 12578999999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|.|+.+.
T Consensus 110 K~Dl~~~ 116 (159)
T cd04150 110 KQDLPNA 116 (159)
T ss_pred CCCCCCC
Confidence 9998643
No 144
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.23 E-value=5.9e-11 Score=107.46 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=70.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+|+|+.++|||||++++.+..+ +... .|+...-
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~~--------------------------------------- 36 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFEN--------------------------------------- 36 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeeee---------------------------------------
Confidence 689999999999999999998765 3221 1211000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---H
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---A 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~---~ 192 (449)
+ ...+.........+.|+||||.... ..+...|++++|++|+|++..+..-...- +
T Consensus 37 -----~---~~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 37 -----Y---VTNIQGPNGKIIELALWDTAGQEEY-------------DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred -----e---EEEEEecCCcEEEEEEEECCCchhH-------------HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0001111112335889999996542 44566789999999999875542211110 1
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+...+... .+.|.++|.||.|+...
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhC
Confidence 11122222 36799999999998653
No 145
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.23 E-value=2e-10 Score=101.91 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=71.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
||+++|.+++|||||++++.+..+ +... .||.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~pt~------------------------------------------ 32 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VPTT------------------------------------------ 32 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----cccC------------------------------------------
Confidence 689999999999999999998754 2111 1100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
| +. . +.+.. ....+.++||||.... +.+...|++++|++|+|++..+.. ........
T Consensus 33 g----~~--~--~~i~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 33 G----FN--S--VAIPT-QDAIMELLEIGGSQNL-------------RKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred C----cc--e--EEEee-CCeEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 1 00 0 11222 2346899999997653 456778999999999999765432 11112222
Q ss_pred HHHhC--CCCCceEEEeccccccCC
Q 013120 196 SREVD--PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 196 ~~~~~--~~~~rti~VltK~D~~~~ 218 (449)
...+. ..+.++++|.||.|+...
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 22221 247899999999998643
No 146
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.23 E-value=5.8e-11 Score=108.19 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=42.1
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHHhCCCCCceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~~~~l~~~~~~~~~rti~VltK 212 (449)
...+++|||||.... ++. ....+..+|++++|+++.. ....+ +.+.++. ..+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~~------------~~~-~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~---~~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHASL------------IRT-IIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGE---ILCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHHH------------HHH-HHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHH---HcCCCEEEEEEC
Confidence 457999999997431 122 3344667899999887543 22111 2222222 236799999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999753
No 147
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.23 E-value=4.3e-11 Score=111.41 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...|++++|++|+|++..+.+... ..++..++... .+.++++|.||+
T Consensus 62 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~ 127 (219)
T PLN03071 62 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127 (219)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEch
Confidence 46899999997653 455678999999999998765532111 12222223332 368999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
|+........+ +. .....+..|+.+++.++.+++..+..+.
T Consensus 128 Dl~~~~v~~~~-~~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 128 DVKNRQVKAKQ-VT-FHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred hhhhccCCHHH-HH-HHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 98643211111 11 0112345677777777776665554443
No 148
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.22 E-value=1.5e-10 Score=104.61 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=46.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHHhCC---CCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVDP---TGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~-l~~~~~~---~~~rti~Vlt 211 (449)
..+.++||||.... +.+...|++.+|++|+|++..+.+... .+.. +.+.+.. ...+.++|.|
T Consensus 61 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iI~v~D~t~~~s~~-~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQDKL-------------RPLWRHYYQNTNGLIFVVDSNDRERIG-DAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHH-HHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 46899999997542 567888999999999999865432111 1222 2222222 2578999999
Q ss_pred cccccC
Q 013120 212 KIDLMD 217 (449)
Q Consensus 212 K~D~~~ 217 (449)
|.|+.+
T Consensus 127 K~Dl~~ 132 (182)
T PTZ00133 127 KQDLPN 132 (182)
T ss_pred CCCCCC
Confidence 999864
No 149
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.22 E-value=4.5e-11 Score=126.36 Aligned_cols=110 Identities=20% Similarity=0.302 Sum_probs=71.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.++.++||||..+..... .. +.+.+.|+. .+|.+|+++++.+. +..+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~VvDat~l----er~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVVDASNL----ERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEecCCcc----hhhHHHHHHHHhcCCCEEEEEehh
Confidence 358999999998754321 11 345666654 68999888876542 234555666666789999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|+........+ .+.....++..++.++.+++.++++..+.+.+
T Consensus 110 Dl~~~~~i~~d-~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRID-EEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhh-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 98743321111 11112345567889999998888776665543
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.22 E-value=4.9e-11 Score=102.32 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=59.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH----HHHHHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI----KISREVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~----~l~~~~~~~~~rti~Vlt 211 (449)
..++++|+||..... .....+++.+|++|++++..+... ..... .........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERFR-------------SLRRLYYRGADGIILVYDVTDRES-FENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHHH-------------hHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 468999999987642 234678899999999887554221 11111 123344455899999999
Q ss_pred cccccCCCCcHHHH-HcCcccccCCCeEEEEeCChhhh
Q 013120 212 KIDLMDKGTDAADI-LEGKSYRLKFPWIGVVNRSQADI 248 (449)
Q Consensus 212 K~D~~~~~~~~~~~-l~~~~~~l~~g~~~v~~~s~~~~ 248 (449)
|+|+.......... ..........+++.+.+....++
T Consensus 111 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 111 KIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred ccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 99998654322211 11111223456676666655443
No 151
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.22 E-value=1.8e-10 Score=103.90 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=46.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHH-HhCC---CCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISR-EVDP---TGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~-~~~~---~~~rti~Vlt 211 (449)
..+.++|+||... .+.+...|++++|++|+|++..+.+- -..+..... .+.. ...+.++|.|
T Consensus 61 ~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~s-~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHHH-HHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 4689999999643 25678899999999999998654321 112222222 2221 3578999999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|.|+.+.
T Consensus 127 K~Dl~~~ 133 (181)
T PLN00223 127 KQDLPNA 133 (181)
T ss_pred CCCCCCC
Confidence 9998654
No 152
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.22 E-value=5.3e-11 Score=106.83 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=71.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|+.++|||||++++.+..| |....+.+...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~-------------------------------------------- 37 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDN-------------------------------------------- 37 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeee--------------------------------------------
Confidence 699999999999999999998765 32211111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-ch--HH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TS--DA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~~--~~ 192 (449)
+ ...+.+. .....+.|+||||..+. ..+...|++++|++|+|++..+.+-. .- .+
T Consensus 38 -----~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 38 -----Y---AVTVMIG-GEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred -----e---EEEEEEC-CEEEEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0011111 11246889999998764 34456789999999999975543211 11 12
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+...+...+ ..|+++|.||.|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 222333233 5799999999998653
No 153
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.21 E-value=1.4e-10 Score=100.60 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=25.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~ 64 (449)
.+|+++|..++|||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 479999999999999999999987 45544
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.21 E-value=1.1e-10 Score=104.00 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH---HHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK---ISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~---l~~~~~~~~~rti~VltK 212 (449)
.++.++|+||.... ..++..|++++|+++++++..+.......... +.+.....+.++++|+||
T Consensus 58 ~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (173)
T cd04155 58 FKLNVWDIGGQRAI-------------RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANK 124 (173)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 46889999997542 45577889999999999876542211111111 222222346899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 125 ~D~~~~ 130 (173)
T cd04155 125 QDLATA 130 (173)
T ss_pred CCCccC
Confidence 998754
No 155
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.21 E-value=9.8e-11 Score=106.33 Aligned_cols=104 Identities=22% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC--CCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--TGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~--~~~rti~VltK~ 213 (449)
..+.|+||||.... ..+...|++.+|++|||++..+..- -.....+..++.. .+.+.|+|.||.
T Consensus 55 ~~l~iwDt~G~~~~-------------~~l~~~~~~~ad~illVfD~t~~~S-f~~~~~w~~~i~~~~~~~piilVGNK~ 120 (189)
T cd04121 55 VKLQLWDTSGQGRF-------------CTIFRSYSRGAQGIILVYDITNRWS-FDGIDRWIKEIDEHAPGVPKILVGNRL 120 (189)
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 46889999998653 5677889999999999997554321 1112222333321 267999999999
Q ss_pred cccCCCC----cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 214 DLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 214 D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|+..... +..++. ...+..|+.+++..+.+++..+..+..
T Consensus 121 DL~~~~~v~~~~~~~~a----~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 121 HLAFKRQVATEQAQAYA----ERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred cchhccCCCHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9864321 122222 223456888888888777766555443
No 156
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.21 E-value=1.3e-10 Score=111.75 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=78.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc-cccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT-RRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.|+|+|..|+|||||+|+|++..+.+.+..... ..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~------------------------------------------~ 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH------------------------------------------I 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc------------------------------------------c
Confidence 799999999999999999999987654422110 000 0
Q ss_pred hCCCCCcccccEEEEEecCC-CCCcEEEeCCCCCcCCcCC-CCCchHHHHHHHHHHH------------hc--CCCeEEE
Q 013120 115 TGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPDSIVQDIENMVRSY------------IE--KPNCIIL 178 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPGl~~~~~~~-q~~~~~~~~~~~~~~y------------i~--~~d~iIl 178 (449)
. ...+-......+...+ ...+++|||||+.+..... .-+.+..-+.+.-..| +. ++|++++
T Consensus 44 -~--~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly 120 (276)
T cd01850 44 -D--KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLY 120 (276)
T ss_pred -C--CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEE
Confidence 0 0000000111121111 2369999999998654221 1111222222222222 22 3567878
Q ss_pred EEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 179 AISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 179 ~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
++++....+. ...+++++.+.. +.++++|+||+|++.+
T Consensus 121 ~i~~~~~~l~-~~D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 121 FIEPTGHGLK-PLDIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EEeCCCCCCC-HHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 8776654443 334677787775 7899999999999764
No 157
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.21 E-value=9.2e-11 Score=123.41 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=96.7
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 013120 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (449)
Q Consensus 30 ~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 109 (449)
+....|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i-------------------------------------- 124 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI-------------------------------------- 124 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------------------------------
Confidence 345679999999999999999999998765322211111110
Q ss_pred HHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc
Q 013120 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (449)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~ 189 (449)
| . ..+..++...++||||||..+. ..+..+++..+|.+|||+++. . ...
T Consensus 125 ------g------~----~~v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVVda~-d-gv~ 173 (587)
T TIGR00487 125 ------G------A----YHVENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVVAAD-D-GVM 173 (587)
T ss_pred ------e------E----EEEEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEEECC-C-CCC
Confidence 0 0 0111122236899999997654 344567788999999998543 2 223
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCCC-cHHHHHcCcc-cc----cCCCeEEEEeCChhhhhccCCHH
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKS-YR----LKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~-~~----l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.+....++.....+.|+++++||+|+..... ...+.+.... .. ....++.+++.++.+++.+...+
T Consensus 174 ~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 174 PQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred HhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 4445555556666789999999999864321 1222222111 11 11347788888887777665544
No 158
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.21 E-value=5.2e-11 Score=105.84 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...|+..+|++|+|++..+..-.. ...+..++...+ ..+.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKV 114 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 46889999997653 233456788999999998754321110 112222333333 68999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
|+......... .+ ........|+.+++.++.+++.....+.
T Consensus 115 Dl~~~~~~~~~-~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 115 DIKDRKVKAKQ-IT-FHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred hcccccCCHHH-HH-HHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 98743221111 11 0112234578888877776665554443
No 159
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.21 E-value=7.5e-11 Score=106.55 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||+|.... ..+...|++++|++++|++..+.+.... .++..++...+...+ |+|.||+
T Consensus 49 ~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQREF-------------INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCchhH-------------HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEch
Confidence 46899999997653 4566789999999999997654321111 233333444343445 7899999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 115 Dl~~ 118 (182)
T cd04128 115 DLFA 118 (182)
T ss_pred hccc
Confidence 9863
No 160
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.21 E-value=1.4e-10 Score=108.87 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
+|+++|.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 161
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.20 E-value=9.5e-11 Score=125.19 Aligned_cols=162 Identities=17% Similarity=0.268 Sum_probs=98.7
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 013120 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (449)
Q Consensus 30 ~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 109 (449)
+..+.|.|+|+|..++|||||+++|.+..+.....+..|
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiT----------------------------------------- 278 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGIT----------------------------------------- 278 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccc-----------------------------------------
Confidence 445779999999999999999999998764211111111
Q ss_pred HHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc
Q 013120 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (449)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~ 189 (449)
..+....+.+.. ......++||||||.... ..+...++..+|++||||++.. . ..
T Consensus 279 ---------q~i~~~~v~~~~-~~~~~kItfiDTPGhe~F-------------~~mr~rg~~~aDiaILVVDA~d-G-v~ 333 (742)
T CHL00189 279 ---------QKIGAYEVEFEY-KDENQKIVFLDTPGHEAF-------------SSMRSRGANVTDIAILIIAADD-G-VK 333 (742)
T ss_pred ---------cccceEEEEEEe-cCCceEEEEEECCcHHHH-------------HHHHHHHHHHCCEEEEEEECcC-C-CC
Confidence 111111111111 112357999999997542 4566778999999999986432 2 23
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCCC-cHHHHHcCc-ccc--c--CCCeEEEEeCChhhhhccCCHHHH
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGK-SYR--L--KFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~-~~~--l--~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
.+..+.++.+...+.|+|+|+||+|+..... ...+.+... ..+ . ..+++.+++.++.+++.+...+..
T Consensus 334 ~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 334 PQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred hhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhh
Confidence 3444455556666889999999999875321 122222111 111 1 135778888888887776655443
No 162
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.19 E-value=2e-10 Score=108.78 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=61.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh------------CCCC
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV------------DPTG 203 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~------------~~~~ 203 (449)
..+.|+||||.... ..+...|+..+|++|+|++..+.+. -+....+..++ ....
T Consensus 48 ~~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIlVfdv~~~~S-f~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHPF-------------PAMRRLSILTGDVFILVFSLDNRES-FEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhcccccccccCCC
Confidence 46889999997653 3445667889999999987554321 11122222222 1236
Q ss_pred CceEEEeccccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 204 ERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 204 ~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.++|+|.||+|+..... ...++.+.........|+.+++..+.+++..+..+
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L 166 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 79999999999975222 22221111001123457788877776666554433
No 163
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.19 E-value=1.2e-10 Score=103.80 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+...|+++|++|+|||||++++++..|-|....+ |-.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKP----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCc-----------------------------------------
Confidence 3457999999999999999999998762122111 1111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.+.... +.+.+ ....+.++|++|-... ..+...|++++|++|+|++..+.. .-...
T Consensus 41 -------~~~~~~--~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~~~-s~~~~ 96 (169)
T cd01892 41 -------RYAVNT--VEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSDPK-SFSYC 96 (169)
T ss_pred -------ceEEEE--EEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCCHH-HHHHH
Confidence 000000 11111 1235789999997653 344667889999999998754321 11122
Q ss_pred HHHHHHhC-CCCCceEEEeccccccCC
Q 013120 193 IKISREVD-PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~-~~~~rti~VltK~D~~~~ 218 (449)
..+.+.+. ..+.|+++|+||+|+...
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEccccccc
Confidence 23444442 236899999999998643
No 164
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.19 E-value=1.3e-11 Score=112.16 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=49.8
Q ss_pred CCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecc
Q 013120 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 133 ~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK 212 (449)
.....++|+||||..+. ...+...+..+|++|+||++. .+ ......+.++.+...+.|.++|+||
T Consensus 67 ~~~~~i~~iDtPG~~~f-------------~~~~~~~~~~~D~ailvVda~-~g-~~~~~~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDF-------------IKEMIRGLRQADIAILVVDAN-DG-IQPQTEEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSHHH-------------HHHHHHHHTTSSEEEEEEETT-TB-STHHHHHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeecccccccce-------------eecccceecccccceeeeecc-cc-cccccccccccccccccceEEeeee
Confidence 45567999999997553 233555689999999988754 33 3445555666666668889999999
Q ss_pred cccc
Q 013120 213 IDLM 216 (449)
Q Consensus 213 ~D~~ 216 (449)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9998
No 165
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.19 E-value=2.1e-10 Score=120.53 Aligned_cols=133 Identities=19% Similarity=0.225 Sum_probs=79.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+.|.|+++|+.++|||||||+|.|..+.....+..|+..-...... .
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~---------------------------------~ 49 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPM---------------------------------D 49 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeee---------------------------------c
Confidence 5799999999999999999999998764443343443210000000 0
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
...+. .....-..++. ...+.++|+||||.... ..+...++..+|++|||++..+ .. ....
T Consensus 50 ~~~~~---~~~~~~~~~v~-~~~~~l~~iDTpG~e~f-------------~~l~~~~~~~aD~~IlVvD~~~-g~-~~qt 110 (590)
T TIGR00491 50 VIEGI---CGDLLKKFKIR-LKIPGLLFIDTPGHEAF-------------TNLRKRGGALADLAILIVDINE-GF-KPQT 110 (590)
T ss_pred ccccc---ccccccccccc-cccCcEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCc-CC-CHhH
Confidence 00000 00000000011 11246999999997543 4456678899999999887543 22 2333
Q ss_pred HHHHHHhCCCCCceEEEeccccccC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
+..+..+...+.+.++|+||+|+..
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 4444445555789999999999874
No 166
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.19 E-value=2.1e-10 Score=106.50 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-ch-HHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TS-DAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~~-~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.++.||||||.... ..+...|++++|++|+|++..+.+-. .. ..+..+........++|+|.||+
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGREQF-------------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEEeCCCcccc-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 35899999997653 45677889999999999875543211 11 11111222233457899999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 167
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.2e-11 Score=104.85 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=92.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..-.|||+|+||+||+|||+..+-..| -... .||
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~Y-----qAT---------------------------------------- 54 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTY-----QAT---------------------------------------- 54 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccc-----cce----------------------------------------
Confidence 335899999999999999999997665 1110 000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
-+.+|-...+ .+.+. ...|.||||.|.-+. +.++-+|++++.++|+|.+-.+..-. ...
T Consensus 55 ----IGiDFlskt~--~l~d~-~vrLQlWDTAGQERF-------------rslipsY~Rds~vaviVyDit~~~Sf-e~t 113 (221)
T KOG0094|consen 55 ----IGIDFLSKTM--YLEDR-TVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDITDRNSF-ENT 113 (221)
T ss_pred ----eeeEEEEEEE--EEcCc-EEEEEEEecccHHHH-------------hhhhhhhccCCeEEEEEEeccccchH-HHH
Confidence 0112222222 22222 346999999998765 88999999999999988875554321 222
Q ss_pred HHHHHHhC---CC-CCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 193 IKISREVD---PT-GERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 193 ~~l~~~~~---~~-~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
-+++..+. .. +-.+++|-||.|+.++..-..+--+.....++.-|..+....+.++..++..++
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 23333332 22 345677889999998743111111111233344466677666666554444333
No 168
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.17 E-value=1.3e-10 Score=108.27 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=49.7
Q ss_pred ecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEE
Q 013120 131 YSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFG 208 (449)
Q Consensus 131 ~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~ 208 (449)
.......++||||||..+.. +.+ ...+ ..+|.+++|+++ ..+. ......++..+...+.+.++
T Consensus 79 ~~~~~~~i~liDtpG~~~~~------------~~~-~~~~~~~~~D~~llVvda-~~g~-~~~d~~~l~~l~~~~ip~iv 143 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYL------------KTT-LFGLTGYAPDYAMLVVAA-NAGI-IGMTKEHLGLALALNIPVFV 143 (224)
T ss_pred eeeCCcEEEEEECCCcHHHH------------HHH-HHhhcccCCCEEEEEEEC-CCCC-cHHHHHHHHHHHHcCCCEEE
Confidence 33445679999999975531 232 2333 368998888764 3333 45556677777777899999
Q ss_pred EeccccccCC
Q 013120 209 VLTKIDLMDK 218 (449)
Q Consensus 209 VltK~D~~~~ 218 (449)
|+||+|+..+
T Consensus 144 vvNK~D~~~~ 153 (224)
T cd04165 144 VVTKIDLAPA 153 (224)
T ss_pred EEECccccCH
Confidence 9999998754
No 169
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.16 E-value=3.5e-10 Score=116.84 Aligned_cols=125 Identities=21% Similarity=0.228 Sum_probs=78.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
+|+|+|.+|+||||++|+|+|...+.++.. .+|.....+..
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~-------------------------------------- 161 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG-------------------------------------- 161 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE--------------------------------------
Confidence 799999999999999999999887655432 23332211110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecC--CCcccch
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPA--NQDLATS 190 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a--~~d~~~~ 190 (449)
..+...+.+|||||+...... ......+...+..++. .+|++|+|..-. ..+....
T Consensus 162 -----------------~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~ 221 (763)
T TIGR00993 162 -----------------LVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDL 221 (763)
T ss_pred -----------------EECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHH
Confidence 012346899999999986422 1234455555666776 478776665322 1222222
Q ss_pred HHHHHHHHhCCC--CCceEEEeccccccCC
Q 013120 191 DAIKISREVDPT--GERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~--~~rti~VltK~D~~~~ 218 (449)
.+++.+..+-.. ..++|+|+|+.|...+
T Consensus 222 ~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 222 PLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 344444443332 4799999999999964
No 170
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.15 E-value=3.8e-10 Score=107.97 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=49.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.||||||..+. ...+..+++.+|++|+|+++.. ... .....+.+.....+.|.++++||+|
T Consensus 70 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvda~~-g~~-~~~~~i~~~~~~~~~P~iivvNK~D 134 (267)
T cd04169 70 DCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAAK-GVE-PQTRKLFEVCRLRGIPIITFINKLD 134 (267)
T ss_pred CEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCC-Ccc-HHHHHHHHHHHhcCCCEEEEEECCc
Confidence 457999999998653 2336778899999999887543 332 2333455555556889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 135 ~~~a 138 (267)
T cd04169 135 REGR 138 (267)
T ss_pred cCCC
Confidence 8644
No 171
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.15 E-value=2.4e-10 Score=102.09 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=68.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
..|+|+|+.++|||||++++.+..+ |....+ |-...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~-t~~~~------------------------------------------ 37 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVP-TVFEN------------------------------------------ 37 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-ccccc------------------------------------------
Confidence 4799999999999999999998765 221111 10000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--H
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--D 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~~--~ 191 (449)
....+.+.+ ....+.++||||.... ..+...++.++|+++++++..+.+ +.+- .
T Consensus 38 ---------~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~ 94 (175)
T cd01870 38 ---------YVADIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 94 (175)
T ss_pred ---------eEEEEEECC-EEEEEEEEeCCCchhh-------------hhccccccCCCCEEEEEEECCCHHHHHHHHHH
Confidence 000111111 1235889999997542 223345678999998877644321 1111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
....++... .+.+.++|.||.|+...
T Consensus 95 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 95 WTPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHHhhC-CCCCEEEEeeChhcccC
Confidence 112222222 26799999999998754
No 172
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.15 E-value=3.3e-10 Score=122.14 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=96.4
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 013120 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (449)
Q Consensus 30 ~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 109 (449)
+..+.|.|+|+|+.++|||||+++|.+..+.....+..|
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT----------------------------------------- 324 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGIT----------------------------------------- 324 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCcee-----------------------------------------
Confidence 345789999999999999999999988665211111011
Q ss_pred HHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc
Q 013120 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (449)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~ 189 (449)
..+.. .. +... ...++||||||.... ..+...++..+|++|||++.. .. ..
T Consensus 325 ---------~~iga--~~--v~~~-~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaILVVdAd-dG-v~ 375 (787)
T PRK05306 325 ---------QHIGA--YQ--VETN-GGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVLVVAAD-DG-VM 375 (787)
T ss_pred ---------eeccE--EE--EEEC-CEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEEEEECC-CC-CC
Confidence 00000 01 1111 246899999997664 345567888999999988543 22 23
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCCC-cHHHHHc-Ccccc----cCCCeEEEEeCChhhhhccCCHHH
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILE-GKSYR----LKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~-~~~~~----l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
.+....++.....+.++|+|+||+|+..... .....+. ..... ....++.+++..+.+++.++..+.
T Consensus 376 ~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 376 PQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred HhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 4444455556666889999999999964321 1211111 11111 124578888888888777665543
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.14 E-value=1.9e-10 Score=121.48 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK~D 214 (449)
..++|||+||..+. ......++.++|++|+||+... ++ ..+..+.+..+...+.+ .++|+||+|
T Consensus 50 ~~v~~iDtPGhe~f-------------~~~~~~g~~~aD~aILVVDa~~-G~-~~qT~ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHEKF-------------ISNAIAGGGGIDAALLVVDADE-GV-MTQTGEHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHHHH-------------HHHHHhhhccCCEEEEEEECCC-CC-cHHHHHHHHHHHHcCCCeEEEEEECCC
Confidence 56899999996432 3335667889999999887543 22 22223333333444666 999999999
Q ss_pred ccCCCC------cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 215 LMDKGT------DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 215 ~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
+.+... +..+++.+........++.+++.++.+++.+...+...
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 986431 11222222111114568888888888777666554443
No 174
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.14 E-value=1.6e-10 Score=103.30 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...|++++|++|+|++..+.+-... .++..++... .+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 35789999998553 2334568899999999987554321111 1222222222 35799999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998653
No 175
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.4e-11 Score=114.84 Aligned_cols=168 Identities=22% Similarity=0.278 Sum_probs=104.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCc---ccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQD 109 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP---~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 109 (449)
.-|.|.++|..|.||||+|+.|++.++ | .|..++|.+-+.+.. -...+.-+=....-.+.+ .|..+...-..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~-G~~e~~ipGnal~vd~~~---pF~gL~~FG~a 131 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMH-GDEEGSIPGNALVVDAKK---PFRGLNKFGNA 131 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEe-cCcccccCCceeeecCCC---chhhhhhhHHH
Confidence 569999999999999999999999875 5 344455555433321 111110000000001111 23333332222
Q ss_pred HHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc
Q 013120 110 ETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 189 (449)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~ 189 (449)
-.++..+ ..+..+-...+++|||||+-+... |.-+-.-.......-|+.++|.|||+.++..-|.+
T Consensus 132 flnRf~c-----------sqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs- 197 (532)
T KOG1954|consen 132 FLNRFMC-----------SQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS- 197 (532)
T ss_pred HHHHHHH-----------hcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhcccc-
Confidence 2223222 234555567899999999987542 22222223456677789999999999998887765
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+.-+.+..+......+-+|+||+|.++..
T Consensus 198 dEf~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 198 DEFKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred HHHHHHHHHhhCCcceeEEEeccccccCHH
Confidence 344457788888889999999999999764
No 176
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.14 E-value=2.4e-10 Score=109.47 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=50.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..+. ...+..+++.+|++|+||++.. .. ......+++.+...+.|.++++||+|
T Consensus 63 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVVDa~~-g~-~~~t~~~~~~~~~~~~p~ivviNK~D 127 (270)
T cd01886 63 DHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAVA-GV-EPQTETVWRQADRYNVPRIAFVNKMD 127 (270)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHcCEEEEEEECCC-CC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999998653 2337789999999999887543 33 33444566666667889999999999
Q ss_pred ccC
Q 013120 215 LMD 217 (449)
Q Consensus 215 ~~~ 217 (449)
+..
T Consensus 128 ~~~ 130 (270)
T cd01886 128 RTG 130 (270)
T ss_pred CCC
Confidence 874
No 177
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.13 E-value=1.1e-10 Score=106.46 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=47.7
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
....++|+||||..+. ..-+...+..+|++|+||++. ... ......+++.+...+.+ .|+|+||
T Consensus 63 ~~~~i~~iDtPG~~~~-------------~~~~~~~~~~~D~~ilVvda~-~g~-~~~~~~~~~~~~~~~~~~iIvviNK 127 (195)
T cd01884 63 ANRHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAT-DGP-MPQTREHLLLARQVGVPYIVVFLNK 127 (195)
T ss_pred CCeEEEEEECcCHHHH-------------HHHHHHHhhhCCEEEEEEECC-CCC-cHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4557999999998642 222455678899999988744 333 34444556666666765 7899999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+..
T Consensus 128 ~D~~~ 132 (195)
T cd01884 128 ADMVD 132 (195)
T ss_pred CCCCC
Confidence 99974
No 178
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.11 E-value=2.1e-10 Score=104.29 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~~--~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||||.... ..+...|++.+|++|+|++..+.+ +.+. .++..++...+ +.++++|.||
T Consensus 48 ~~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46899999997553 234556889999999988654432 2111 12223333222 6799999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999754
No 179
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.11 E-value=4.8e-10 Score=105.47 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.||||||..+. ...+..+++.+|++|+|++... .. ......+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~~~-g~-~~~~~~~~~~~~~~~~P~iivvNK~D 127 (237)
T cd04168 63 DTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISAVE-GV-QAQTRILWRLLRKLNIPTIIFVNKID 127 (237)
T ss_pred CEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeCCC-CC-CHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 357999999999764 3346788999999999987543 33 23334455555556889999999999
Q ss_pred ccC
Q 013120 215 LMD 217 (449)
Q Consensus 215 ~~~ 217 (449)
+..
T Consensus 128 ~~~ 130 (237)
T cd04168 128 RAG 130 (237)
T ss_pred ccC
Confidence 874
No 180
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.11 E-value=2.9e-10 Score=102.03 Aligned_cols=115 Identities=23% Similarity=0.234 Sum_probs=73.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|+.++|||||+..++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 689999999999999999998765 322111 1111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c--hHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T--SDA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~--~~~ 192 (449)
.+ ...+.+. ....++.|+||+|.... +.+...|++++|++|||++..+..-. + ..+
T Consensus 37 ----~~---~~~~~~~-~~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 37 ----NF---SANVSVD-GNTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 00 0011121 12356899999998664 44566799999999999875543211 1 122
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+..++...+ ..+.++|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 333333333 6899999999999653
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.11 E-value=3.4e-10 Score=104.07 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~--~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++||||||..+ ....+..++..+|.+++|++...... .+.+.+..+... ...+.++|+||+
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEch
Confidence 4689999999432 13335566778899999987553222 122333333222 124689999999
Q ss_pred cccCCCC--cHHHHHcCcc---cccCCCeEEEEeCChhhhhccCCH
Q 013120 214 DLMDKGT--DAADILEGKS---YRLKFPWIGVVNRSQADINKNVDM 254 (449)
Q Consensus 214 D~~~~~~--~~~~~l~~~~---~~l~~g~~~v~~~s~~~~~~~~~~ 254 (449)
|+..... ...+.++... ......++.+++.++.+++.+...
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~ 193 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEY 193 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHH
Confidence 9975321 1111111100 012345677777776666554443
No 182
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.11 E-value=6.9e-10 Score=103.79 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..-.|+|+|+.++|||||++.+++..| +... .||...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~------------------------------------- 48 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFE------------------------------------- 48 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceee-------------------------------------
Confidence 445799999999999999999998775 2221 121100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--- 189 (449)
.+ ...+.+. .....|.|+||||-... +.+...|++++|++|+|++..+.+-..
T Consensus 49 -------~~---~~~i~~~-~~~v~l~iwDTaG~e~~-------------~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 49 -------NY---TAGLETE-EQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred -------ee---EEEEEEC-CEEEEEEEEeCCCchhh-------------HHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 00 0011111 12246899999996543 456778999999999998765433211
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
..++..++...+ +.++|+|.||+|+..
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 122333444344 578999999999854
No 183
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.11 E-value=5.5e-10 Score=100.12 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+-... .++...+...+ ..+.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCchhh-------------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 45889999997553 3456678999999999997654321111 12222333333 6799999999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+.+
T Consensus 115 ~Dl~~ 119 (174)
T cd01871 115 LDLRD 119 (174)
T ss_pred hhhcc
Confidence 99864
No 184
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.10 E-value=1.6e-10 Score=108.58 Aligned_cols=153 Identities=20% Similarity=0.306 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..+-|.+||-||||||||||||+..+-=-.....+|-.|..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~i--------------------------------------- 235 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHI--------------------------------------- 235 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeecccc---------------------------------------
Confidence 34578999999999999999999764100111234444411
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHH---HHHHhcCCCeEEEEEecCCC-ccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM---VRSYIEKPNCIILAISPANQ-DLA 188 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~---~~~yi~~~d~iIl~v~~a~~-d~~ 188 (449)
| .+...+..++++-|+||++..++.+ +.| ..+.|+.++.+++||+-++. +..
T Consensus 236 ---G------------~v~yddf~q~tVADiPGiI~GAh~n---------kGlG~~FLrHiER~~~l~fVvD~s~~~~~~ 291 (366)
T KOG1489|consen 236 ---G------------TVNYDDFSQITVADIPGIIEGAHMN---------KGLGYKFLRHIERCKGLLFVVDLSGKQLRN 291 (366)
T ss_pred ---c------------eeeccccceeEeccCcccccccccc---------CcccHHHHHHHHhhceEEEEEECCCcccCC
Confidence 2 0223344569999999999877653 233 33446678888888875543 112
Q ss_pred chHHHH-HHHHhCC-----CCCceEEEeccccccCCCCcHHHHHcCcccccCCC-eEEEEeCChhhhhcc
Q 013120 189 TSDAIK-ISREVDP-----TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINKN 251 (449)
Q Consensus 189 ~~~~~~-l~~~~~~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~ 251 (449)
-.+.++ |..++.- ..++.++|+||+|+.+...+. +......+..+ .+++++++++++..+
T Consensus 292 p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 292 PWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccchHHH
Confidence 222222 3344432 145699999999997443332 22212334444 677787777665443
No 185
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.10 E-value=3e-09 Score=107.03 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=31.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEE
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 73 (449)
.+|++||.+|+|||||+|+|++..+-......||..|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987633344457777755
No 186
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.09 E-value=7e-10 Score=106.55 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=49.9
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+++|||||..+. ...+..++..+|++|+++++.... ......+.+.+...+.+.++|+||+|
T Consensus 63 ~~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~Vvd~~~g~--~~~~~~~~~~~~~~~~p~iivvNK~D 127 (268)
T cd04170 63 GHKINLIDTPGYADF-------------VGETRAALRAADAALVVVSAQSGV--EVGTEKLWEFADEAGIPRIIFINKMD 127 (268)
T ss_pred CEEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 357899999998653 344677889999999988755422 22334455556666889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
....
T Consensus 128 ~~~~ 131 (268)
T cd04170 128 RERA 131 (268)
T ss_pred cCCC
Confidence 8754
No 187
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.08 E-value=5.4e-10 Score=99.71 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=43.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.+.++||||..... .+...+++++|++|+|++..+.+-... .....++.. ..+.+.++|.||+
T Consensus 49 ~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~ 114 (174)
T cd04135 49 LLGLYDTAGQEDYD-------------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQI 114 (174)
T ss_pred EEEEEeCCCccccc-------------ccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEch
Confidence 47899999976532 223457889999999886544321111 122233333 3478999999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 115 Dl~~~ 119 (174)
T cd04135 115 DLRDD 119 (174)
T ss_pred hhhcC
Confidence 98653
No 188
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.08 E-value=8e-10 Score=102.63 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=50.7
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.||||||..+. ...+..+++.+|++|+||+... .. ......+++.....+.+.++|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~ilVvD~~~-g~-~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF-------------SSEVTAALRLCDGALVVVDAVE-GV-CVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc-------------HHHHHHHHHhcCeeEEEEECCC-CC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 346899999999874 3457889999999999887543 22 33445566666666789999999999
Q ss_pred cc
Q 013120 215 LM 216 (449)
Q Consensus 215 ~~ 216 (449)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 189
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.08 E-value=1.6e-09 Score=105.87 Aligned_cols=110 Identities=23% Similarity=0.231 Sum_probs=62.3
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhhC
Q 013120 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (449)
|++||.+|+|||||+|+|++..+-......||.-|+.-....... .+..++ +....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~----------~~~~r~--------------~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVE----------CPCKEL--------------GVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecC----------CCchhh--------------hhhhc
Confidence 589999999999999999998753333334777775432211000 000000 00000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
...+ ..+.+....++.++||||+......+ ..+.+...++++++|++|+||+..
T Consensus 57 ~~~~-------~~~~~~~~v~i~l~D~aGlv~ga~~~------~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 57 PRYG-------KCIDGKRYVPVELIDVAGLVPGAHEG------KGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred cccc-------ccccCcCcceEEEEECCCCCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0000 00111122458999999998654321 123344666799999999998754
No 190
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.08 E-value=1.3e-09 Score=100.20 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=46.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCC-CeEEEEEecCCCcccchHHHHHH----H--HhCCCCCceEE
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP-NCIILAISPANQDLATSDAIKIS----R--EVDPTGERTFG 208 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~-d~iIl~v~~a~~d~~~~~~~~l~----~--~~~~~~~rti~ 208 (449)
..+.|||+||..+. +.+...|++.+ +++|+++++....-...+....+ . .....+.|+++
T Consensus 48 ~~~~l~D~pG~~~~-------------~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvli 114 (203)
T cd04105 48 KKFRLVDVPGHPKL-------------RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLI 114 (203)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 45899999997753 45677888898 99999998765311111211111 1 11224789999
Q ss_pred EeccccccCC
Q 013120 209 VLTKIDLMDK 218 (449)
Q Consensus 209 VltK~D~~~~ 218 (449)
|.||.|+...
T Consensus 115 v~NK~Dl~~a 124 (203)
T cd04105 115 ACNKQDLFTA 124 (203)
T ss_pred Eecchhhccc
Confidence 9999998754
No 191
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.07 E-value=1.3e-09 Score=100.98 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=47.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..+.+|||||..+. ...+..++..+|++|++++.... . ......+.+.....+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~~~~-~-~~~~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDVVEG-V-TSNTERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEECCCC-C-CHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 46899999998764 34577889999999999875542 2 222333444444456899999999998
Q ss_pred c
Q 013120 216 M 216 (449)
Q Consensus 216 ~ 216 (449)
.
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 6
No 192
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.06 E-value=5.6e-10 Score=102.28 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+-. . ..+...++... .+.+.++|.||+
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~ 109 (200)
T smart00176 44 IRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 109 (200)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 46899999998763 56677899999999999875543211 0 11222233333 368999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
|+....... +.+. .....+..|+.+++.++.+++..+..+...
T Consensus 110 Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 110 DVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred ccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 985432111 1111 112234568888888877777666555443
No 193
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.06 E-value=7.2e-10 Score=99.73 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=71.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|+.++|||||++++.+..| |... .||...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE----------------------------------------
Confidence 699999999999999999998765 3321 121100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~~ 192 (449)
.+ ...+.+.+ ....+.|+||||.... ..+...|++++|++|+|++..+.+-.. ..+
T Consensus 37 ----~~---~~~~~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 37 ----NY---TASFEIDE-QRIELSLWDTSGSPYY-------------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred ----EE---EEEEEECC-EEEEEEEEECCCchhh-------------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 00 00111211 2346899999997543 344567899999999998755432111 122
Q ss_pred HHHHHHhCCCCCceEEEeccccccC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
...++...+ ..+.++|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 233444444 678999999999854
No 194
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.06 E-value=8.5e-10 Score=99.60 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=72.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|+.++|||||++.+.+..| +.... +|-..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------- 40 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------- 40 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee-------------------------------------------
Confidence 3799999999999999999998775 32211 11110
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c--hH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T--SD 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~--~~ 191 (449)
.+ ...+.+. .....+.|+||+|-... ..+...|++++|++|+|++..+.+-. + ..
T Consensus 41 -----~~---~~~~~~~-~~~~~l~iwDtaG~e~~-------------~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~ 98 (182)
T cd04172 41 -----NY---TASFEID-TQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKK 98 (182)
T ss_pred -----ee---EEEEEEC-CEEEEEEEEECCCchhh-------------HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 0011111 12246899999997543 45567899999999999875543211 1 12
Q ss_pred HHHHHHHhCCCCCceEEEeccccccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
+...++...+ ..+.++|.||.|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 2233344444 578999999999854
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.06 E-value=5.4e-10 Score=114.44 Aligned_cols=70 Identities=13% Similarity=0.267 Sum_probs=42.9
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC-cccchHHHHHHHHhCCCC-CceEEEec
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISREVDPTG-ERTFGVLT 211 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~-d~~~~~~~~l~~~~~~~~-~rti~Vlt 211 (449)
+...++||||||..+.. .. ....+..+|++|+|++.... ... ......+..+...+ .+.++|+|
T Consensus 82 ~~~~i~liDtpG~~~~~------------~~-~~~~~~~aD~~ilVvDa~~~~~~~-~~~~~~~~~~~~~~~~~iivviN 147 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV------------KN-MITGASQADAAVLVVAADDAGGVM-PQTREHVFLARTLGINQLIVAIN 147 (425)
T ss_pred CCeEEEEEECCCcccch------------hh-HhhchhcCCEEEEEEEcccCCCCC-cchHHHHHHHHHcCCCeEEEEEE
Confidence 34579999999965421 12 33446789999999875431 222 22222222233334 46889999
Q ss_pred cccccC
Q 013120 212 KIDLMD 217 (449)
Q Consensus 212 K~D~~~ 217 (449)
|+|+..
T Consensus 148 K~Dl~~ 153 (425)
T PRK12317 148 KMDAVN 153 (425)
T ss_pred cccccc
Confidence 999975
No 196
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.05 E-value=1.1e-09 Score=115.77 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=91.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+-.|+++|+.++|||||+++|+... +..++.... ..+.|.... ++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~~---------------------~~~~D~~~~--------Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREMR---------------------EQVLDSMDL--------ER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccccc---------------------ccccCCChH--------HH
Confidence 3479999999999999999999743 222221100 000000000 11
Q ss_pred hhCCCCCcccccEEEEEe--cCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 114 ETGRTKQISSVPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~--~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
..| .++....+.+... ......+.||||||..+. ...+..|+..+|++|+|++..+ ....+
T Consensus 48 erG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~aILVvDat~-g~~~q- 110 (595)
T TIGR01393 48 ERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDAAQ-GIEAQ- 110 (595)
T ss_pred hcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEecCCC-CCCHh-
Confidence 112 2333344444433 122356899999999874 3456788999999999887543 22222
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCCc-HHHHHcCcccccCC---CeEEEEeCChhhhhccCCHH
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGTD-AADILEGKSYRLKF---PWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~~~~~~~~~ 255 (449)
....+......+.+.++|+||+|+.....+ ..+.+.. .++. .++.+++.++.+++.++..+
T Consensus 111 t~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~---~lg~~~~~vi~vSAktG~GI~~Lle~I 175 (595)
T TIGR01393 111 TLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEE---VIGLDASEAILASAKTGIGIEEILEAI 175 (595)
T ss_pred HHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHH---HhCCCcceEEEeeccCCCCHHHHHHHH
Confidence 222222222246789999999998643211 1111111 1222 25667777766666555444
No 197
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=8.4e-10 Score=97.09 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=95.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..+-.|+++|+.|+|||-|+-.+.+..| |-..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~----------------------------------------------- 38 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY----------------------------------------------- 38 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCc-chhh-----------------------------------------------
Confidence 4577899999999999999999998775 2111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
..+.++......+++.+... .|.++||.|--+. +.++.+|.+++|.||+|.+-....-. ..
T Consensus 39 ----~sTIGVDf~~rt~e~~gk~i-KlQIWDTAGQERF-------------rtit~syYR~ahGii~vyDiT~~~SF-~~ 99 (205)
T KOG0084|consen 39 ----ISTIGVDFKIRTVELDGKTI-KLQIWDTAGQERF-------------RTITSSYYRGAHGIIFVYDITKQESF-NN 99 (205)
T ss_pred ----cceeeeEEEEEEeeecceEE-EEEeeeccccHHH-------------hhhhHhhccCCCeEEEEEEcccHHHh-hh
Confidence 22233333334444444433 7999999998553 78899999999999999864432111 11
Q ss_pred HHHHHHHhC---CCCCceEEEeccccccCCCCcHHHHHcCcccccCCC-eEEEEeCChhhhhc
Q 013120 192 AIKISREVD---PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP-WIGVVNRSQADINK 250 (449)
Q Consensus 192 ~~~l~~~~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~ 250 (449)
.-.+..+++ ....+.++|-||+|+.+...-..+..+.....+..+ |..+++.++.++++
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 112333444 335689999999999865321111111112334445 67776666554443
No 198
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.04 E-value=1.1e-09 Score=99.71 Aligned_cols=115 Identities=22% Similarity=0.228 Sum_probs=71.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|+.++|||||+..++...| |... .||.-.
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 38 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD---------------------------------------- 38 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe----------------------------------------
Confidence 799999999999999999998765 2211 121100
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-ch--HH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TS--DA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~~--~~ 192 (449)
.+ ...+.+. .....+.|+||||-... +.+...|++++|++|+|++..+.+-. +- .+
T Consensus 39 ----~~---~~~~~~~-~~~~~l~i~Dt~G~e~~-------------~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 39 ----NY---SAQTAVD-GRTVSLNLWDTAGQEEY-------------DRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCCchhh-------------hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0011111 12346899999998663 45677899999999999875543211 11 11
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
...++...+ +.+.++|.||.|+.+.
T Consensus 98 ~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 98 HPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 111222223 6899999999998643
No 199
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.04 E-value=4.5e-10 Score=98.96 Aligned_cols=101 Identities=16% Similarity=0.283 Sum_probs=62.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+|+||.... ..+...+++++|++|+|++..+.+-. ...++.......+...+.++|.||.
T Consensus 48 ~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~ 114 (162)
T PF00071_consen 48 VNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKS 114 (162)
T ss_dssp EEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETT
T ss_pred cccccccccccccc-------------cccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 35899999996543 44566789999999999865442111 1133334445555567999999999
Q ss_pred cccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 214 DLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 214 D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
|+.+... ...+ .+......+.+|+.+......++..
T Consensus 115 D~~~~~~v~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 115 DLSDEREVSVEE-AQEFAKELGVPYFEVSAKNGENVKE 151 (162)
T ss_dssp TGGGGSSSCHHH-HHHHHHHTTSEEEEEBTTTTTTHHH
T ss_pred cccccccchhhH-HHHHHHHhCCEEEEEECCCCCCHHH
Confidence 9886322 1111 1111223447788887766555443
No 200
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.02 E-value=2.6e-09 Score=113.11 Aligned_cols=169 Identities=17% Similarity=0.273 Sum_probs=94.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+..|+++|+.++|||||+++|+... |..++... +..+.|.... +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~---------------------~~~~lD~~~~--------E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM---------------------KAQVLDSMDL--------E 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc---------------------ccccccCchH--------H
Confidence 34589999999999999999998642 22111110 0001111100 1
Q ss_pred hhhCCCCCcccccEEEEEecCC--CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
+..| .++....+.+....++ ...++||||||..+. ...+..++..+|++|||++..+ ....
T Consensus 51 rerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aILVVDas~-gv~~- 113 (600)
T PRK05433 51 RERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVDASQ-GVEA- 113 (600)
T ss_pred hhcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEEEEECCC-CCCH-
Confidence 1112 2333344444443222 346899999999874 3447788999999999887543 2222
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCC-cHHHHHcCcccccCCC---eEEEEeCChhhhhccCCHHH
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFP---WIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g---~~~v~~~s~~~~~~~~~~~~ 256 (449)
+....+..+...+.+.++|+||+|+..... ...+.+.. .++.. ++.+++.++.++..+...+.
T Consensus 114 qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~iSAktG~GI~~Ll~~I~ 180 (600)
T PRK05433 114 QTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIED---VIGIDASDAVLVSAKTGIGIEEVLEAIV 180 (600)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHH---HhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 222222333334788999999999864321 11111111 12222 56777777776665554443
No 201
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.00 E-value=1.2e-09 Score=116.01 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=64.4
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
+...++||||||..+. +.. +..++..+|.+++||+ +...+ ..+..+.+..+...+.+ .|+|+||
T Consensus 49 ~g~~i~~IDtPGhe~f------------i~~-m~~g~~~~D~~lLVVd-a~eg~-~~qT~ehl~il~~lgi~~iIVVlNK 113 (614)
T PRK10512 49 DGRVLGFIDVPGHEKF------------LSN-MLAGVGGIDHALLVVA-CDDGV-MAQTREHLAILQLTGNPMLTVALTK 113 (614)
T ss_pred CCcEEEEEECCCHHHH------------HHH-HHHHhhcCCEEEEEEE-CCCCC-cHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 3445899999997442 233 4566889999998886 43333 23334444444444555 5799999
Q ss_pred ccccCCCC--c----HHHHHcCccccc-CCCeEEEEeCChhhhhccCCHHHHH
Q 013120 213 IDLMDKGT--D----AADILEGKSYRL-KFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 213 ~D~~~~~~--~----~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
+|+.++.. . +.+.+.+ ..+ ...++.++..++.+++.+...+...
T Consensus 114 iDlv~~~~~~~v~~ei~~~l~~--~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 114 ADRVDEARIAEVRRQVKAVLRE--YGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred CccCCHHHHHHHHHHHHHHHHh--cCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 99975321 1 1122211 111 2467888888888877766655543
No 202
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.6e-09 Score=96.67 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=98.1
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
+..+-.|+++|+.++|||+++-.+....|-+ .+...+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-------~~~sTi------------------------------------ 45 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-------SFISTI------------------------------------ 45 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcC-------CccceE------------------------------------
Confidence 3467799999999999999999999876511 111000
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT 189 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~ 189 (449)
++....-.+.+.+ ....|.+|||.|-.+. +.++.+|++.|+.|+||++-.+.. +.+
T Consensus 46 ---------GIDFk~kti~l~g-~~i~lQiWDtaGQerf-------------~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 46 ---------GIDFKIKTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred ---------EEEEEEEEEEeCC-eEEEEEEEEcccchhH-------------HHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 0111111111111 2235899999998775 788999999999999999765531 221
Q ss_pred -hHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 190 -SDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 190 -~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
..+++..++..+.+.+.++|-||+|+.++...-.+.-+......+..|+.+++..+.++..
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 2344455555666889999999999987443211211111234466688888777665543
No 203
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.99 E-value=2.4e-09 Score=99.53 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=71.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+|||+.++|||||++++++..| |....+ |-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p-Ti~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVP-TVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCC-cccc--------------------------------------------
Confidence 689999999999999999998775 332211 1111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~ 192 (449)
.+ ...+.+. .....|.|+||+|-... ..+...|++++|++|+|++..+.+-... .+
T Consensus 37 ----~~---~~~~~~~-~~~v~L~iwDt~G~e~~-------------~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 37 ----NY---TASFEID-KRRIELNMWDTSGSSYY-------------DNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred ----ce---EEEEEEC-CEEEEEEEEeCCCcHHH-------------HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111121 12346899999997643 4456678999999999997554321111 11
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
....+...+ +.++++|.||+|+...
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 112222223 6799999999998653
No 204
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.98 E-value=1.4e-09 Score=97.54 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=49.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHHhC---CCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVD---PTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~-l~~~~~---~~~~rti~Vl 210 (449)
...++++|++|-... +.+...|++++|+||+||++++.+. -.++.. +...+. -.+.|.++++
T Consensus 57 ~~~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~~-l~e~~~~L~~ll~~~~~~~~piLIl~ 122 (175)
T PF00025_consen 57 GYSLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPER-LQEAKEELKELLNDPELKDIPILILA 122 (175)
T ss_dssp TEEEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGGG-HHHHHHHHHHHHTSGGGTTSEEEEEE
T ss_pred cEEEEEEeccccccc-------------cccceeeccccceeEEEEeccccee-ecccccchhhhcchhhcccceEEEEe
Confidence 346899999997653 4567889999999999998775442 223333 222222 2368999999
Q ss_pred ccccccCC
Q 013120 211 TKIDLMDK 218 (449)
Q Consensus 211 tK~D~~~~ 218 (449)
||.|..+.
T Consensus 123 NK~D~~~~ 130 (175)
T PF00025_consen 123 NKQDLPDA 130 (175)
T ss_dssp ESTTSTTS
T ss_pred ccccccCc
Confidence 99998754
No 205
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.7e-10 Score=96.97 Aligned_cols=155 Identities=14% Similarity=0.232 Sum_probs=94.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+++|+.|+|||||+..+.-.+|-+ ...+++-..
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaa-------------------------------------------- 41 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAA-------------------------------------------- 41 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCcccc-ccccccccE--------------------------------------------
Confidence 79999999999999999999887632 111111111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
|-...+. + ......+.|+||.|..+. ..++.-|++++++.|+|.+-.+.+- -..+-.+
T Consensus 42 -----F~tktv~--~-~~~~ikfeIWDTAGQERy-------------~slapMYyRgA~AAivvYDit~~~S-F~~aK~W 99 (200)
T KOG0092|consen 42 -----FLTKTVT--V-DDNTIKFEIWDTAGQERY-------------HSLAPMYYRGANAAIVVYDITDEES-FEKAKNW 99 (200)
T ss_pred -----EEEEEEE--e-CCcEEEEEEEEcCCcccc-------------cccccceecCCcEEEEEEecccHHH-HHHHHHH
Confidence 1111111 1 112345789999999885 5678899999999999986443321 2233334
Q ss_pred HHHhCCCC---CceEEEeccccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 196 SREVDPTG---ERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 196 ~~~~~~~~---~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
.+++.... .-+.+|-||+|+..... ++.+. +.....-++-|+..+...+.+++.....+...
T Consensus 100 vkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea-~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 100 VKELQRQASPNIVIALVGNKADLLERREVEFEEA-QAYAESQGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred HHHHHhhCCCCeEEEEecchhhhhhcccccHHHH-HHHHHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence 55554432 23444889999997433 22221 11122356778999988887776655444433
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.98 E-value=2.7e-09 Score=112.58 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
+.++|+||||..+. ..+...++..+|++|||++... .+ ..+....+..+...+.++++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvDa~~-g~-~~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEAF-------------TNLRKRGGALADIAILVVDINE-GF-QPQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHHH-------------HHHHHHhHhhCCEEEEEEECCC-CC-CHhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 35899999998653 3445567889999999887543 22 233333444444567899999999998
Q ss_pred c
Q 013120 216 M 216 (449)
Q Consensus 216 ~ 216 (449)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 207
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.97 E-value=9e-09 Score=94.33 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=46.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHh---------------
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV--------------- 199 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~--------------- 199 (449)
.+.|+||+|-... +.+...|++++|++|+|++-.+.+-.. ..++..+...
T Consensus 55 ~l~IwDtaG~e~~-------------~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~ 121 (202)
T cd04102 55 FVELWDVGGSESV-------------KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD 121 (202)
T ss_pred EEEEEecCCchhH-------------HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 5789999998653 567788999999999998755532111 1222222221
Q ss_pred ----CCCCCceEEEeccccccCC
Q 013120 200 ----DPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 200 ----~~~~~rti~VltK~D~~~~ 218 (449)
.+...|+++|.||.|+.+.
T Consensus 122 ~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 122 SEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ccccCCCCceEEEEEECccchhh
Confidence 1235689999999999754
No 208
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.93 E-value=4.9e-09 Score=95.00 Aligned_cols=68 Identities=22% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||..... .+...++.++|+++++.+..+.+.... .++..++...+ ..+.++|.||
T Consensus 49 ~~l~i~Dt~g~~~~~-------------~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK 114 (187)
T cd04129 49 VQLALWDTAGQEEYE-------------RLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLK 114 (187)
T ss_pred EEEEEEECCCChhcc-------------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 357899999975432 112246789999988876544321111 12233333333 5899999999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+.+
T Consensus 115 ~Dl~~ 119 (187)
T cd04129 115 KDLRQ 119 (187)
T ss_pred hhhhh
Confidence 99854
No 209
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=105.04 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHhcCCC-CCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCC
Q 013120 4 LISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG 82 (449)
Q Consensus 4 l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~ 82 (449)
+..++.+.+..++.|.+.. ...++|++...-++++|+|-+|+||||++|-++-.+. . +-.+|
T Consensus 137 m~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----e-vqpYa----------- 199 (620)
T KOG1490|consen 137 MATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----E-VQPYA----------- 199 (620)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----c-cCCcc-----------
Confidence 3444555555554444322 2456777777889999999999999999998886543 1 11111
Q ss_pred CccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHH
Q 013120 83 SREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDI 162 (449)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~ 162 (449)
|....+.+.-.........++||||+.+.+.+ ....+
T Consensus 200 --------------------------------------FTTksL~vGH~dykYlrwQViDTPGILD~plE-----drN~I 236 (620)
T KOG1490|consen 200 --------------------------------------FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE-----DRNII 236 (620)
T ss_pred --------------------------------------cccchhhhhhhhhheeeeeecCCccccCcchh-----hhhHH
Confidence 11111111112223345789999999986544 44455
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC--cccchHHHHHHHHhCCC--CCceEEEeccccccCCCC
Q 013120 163 ENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPT--GERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 163 ~~~~~~yi~~~d~iIl~v~~a~~--d~~~~~~~~l~~~~~~~--~~rti~VltK~D~~~~~~ 220 (449)
+..+...+.+-.+.+|.+.+-+. +.+-.+-.+|...+.|. .+++|+|+||+|.+.++.
T Consensus 237 EmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 237 EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred HHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 55555566665544455443222 33334445566667765 688999999999997653
No 210
>PTZ00258 GTP-binding protein; Provisional
Probab=98.92 E-value=8.7e-09 Score=102.69 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..-.+|++||.+|+|||||+|+|+|..........||+-|..-.+...+.. + +.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r--------------~---~~l~------- 74 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDER--------------F---DWLC------- 74 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccch--------------h---hHHH-------
Confidence 355689999999999999999999987644444557877755443211100 0 0000
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEec
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~ 182 (449)
...+. + .....++.+|||||+......+ ..+.+-....++++|+||+||+.
T Consensus 75 -~~~~~-~------------~~~~aqi~lvDtpGLv~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 75 -KHFKP-K------------SIVPAQLDITDIAGLVKGASEG------EGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred -HHcCC-c------------ccCCCCeEEEECCCcCcCCcch------hHHHHHHHHHHHHCCEEEEEEeC
Confidence 00000 0 0012358999999999754331 22233456678899999999975
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.91 E-value=2.8e-09 Score=99.21 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=44.4
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----cchHHHHHHHHhCCCC-CceE
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAIKISREVDPTG-ERTF 207 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-----~~~~~~~l~~~~~~~~-~rti 207 (449)
....++++||||..+. ...+..++..+|++|+||++..... ...............+ .+++
T Consensus 75 ~~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 141 (219)
T cd01883 75 EKYRFTILDAPGHRDF-------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLI 141 (219)
T ss_pred CCeEEEEEECCChHHH-------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEE
Confidence 4467999999997542 1224456788999999988654211 1112222222222233 6789
Q ss_pred EEeccccccC
Q 013120 208 GVLTKIDLMD 217 (449)
Q Consensus 208 ~VltK~D~~~ 217 (449)
+|+||+|+..
T Consensus 142 ivvNK~Dl~~ 151 (219)
T cd01883 142 VAVNKMDDVT 151 (219)
T ss_pred EEEEcccccc
Confidence 9999999973
No 212
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.90 E-value=6.1e-09 Score=99.35 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=60.5
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhhC
Q 013120 37 IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETG 116 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (449)
|++||.+|+|||||+|+|+|...-+.....||+-|..-...-.+. . ++.+. ....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~--------------r---~~~l~-------~~~~~ 56 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDE--------------R---LDKLA-------EIVKP 56 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccc--------------h---hhhHH-------HHhCC
Confidence 579999999999999999998864444455777774433211100 0 00000 00000
Q ss_pred CCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEec
Q 013120 117 RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (449)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~ 182 (449)
+ +. ....+.+||+||+......+ ..+.+...+.++++|++|+||+.
T Consensus 57 --~-------k~-----~~~~i~lvD~pGl~~~a~~~------~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 57 --K-------KI-----VPATIEFVDIAGLVKGASKG------EGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred --c-------ee-----eeeEEEEEECCCcCCCCchh------hHHHHHHHHHHHhCCEEEEEEeC
Confidence 0 00 01258999999999754331 12233455668899999998864
No 213
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.89 E-value=8.9e-09 Score=111.54 Aligned_cols=134 Identities=15% Similarity=0.240 Sum_probs=80.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
++..|+|+|..++|||||+|+|++.. +...+ .- ...+ +....|+... +
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~~-----~~~~------------g~~~~D~~~~--------e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHK-IG-----EVHD------------GAATMDWMEQ--------E 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccc-cc-----cccC------------CccccCCCHH--------H
Confidence 45689999999999999999998642 11100 00 0000 0111111110 1
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+..|.+ +......+ .. ....++||||||..+.. ..+..+++.+|++|+|++... .. ....
T Consensus 57 ~~rgit--i~~~~~~~--~~-~~~~i~liDTPG~~~~~-------------~~~~~~l~~~D~~ilVvda~~-g~-~~~~ 116 (689)
T TIGR00484 57 KERGIT--ITSAATTV--FW-KGHRINIIDTPGHVDFT-------------VEVERSLRVLDGAVAVLDAVG-GV-QPQS 116 (689)
T ss_pred HhcCCC--EecceEEE--EE-CCeEEEEEECCCCcchh-------------HHHHHHHHHhCEEEEEEeCCC-CC-ChhH
Confidence 112322 22222222 22 24579999999997642 237788999999999987443 33 2334
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+++.+...+.+.++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 45666666668899999999998853
No 214
>CHL00071 tufA elongation factor Tu
Probab=98.89 E-value=7.1e-09 Score=105.47 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
+...++||||||..+ .+.. +...+..+|++++++++. ... ......++..+...+.+ .|+|+||
T Consensus 73 ~~~~~~~iDtPGh~~------------~~~~-~~~~~~~~D~~ilVvda~-~g~-~~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 73 ENRHYAHVDCPGHAD------------YVKN-MITGAAQMDGAILVVSAA-DGP-MPQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCeEEEEEECCChHH------------HHHH-HHHHHHhCCEEEEEEECC-CCC-cHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 345789999999542 2233 345577899999988744 333 34445556666666777 6789999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 138 ~D~~~~ 143 (409)
T CHL00071 138 EDQVDD 143 (409)
T ss_pred cCCCCH
Confidence 999854
No 215
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.89 E-value=6.7e-09 Score=94.81 Aligned_cols=66 Identities=24% Similarity=0.140 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~~--~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||+|.... +...|++++|++|+|++..+.+ +.+- .+...++...+ ..++++|.||
T Consensus 66 v~l~iwDTaG~~~~---------------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHDK---------------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChhh---------------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 46899999998541 1335889999999998755432 1111 12233333333 5789999999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 216
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.87 E-value=1e-08 Score=95.20 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=79.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-+|+|+|..|+|||||++++.+..+ +.+..+ .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 4899999999999999999999875 322111 122221111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc---c
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA---T 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~---~ 189 (449)
........+.++||+|.... +.+...|...+++++++++....... .
T Consensus 48 -----------------~~~~~~~~~~~~Dt~gq~~~-------------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 48 -----------------EPYRRNIKLQLWDTAGQEEY-------------RSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred -----------------EeCCCEEEEEeecCCCHHHH-------------HHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 00111335889999998874 67788999999999999876542222 2
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCCC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (449)
..+...++...+...+++.|.||+|+.....
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 2333344444545689999999999987653
No 217
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.87 E-value=9.9e-09 Score=104.29 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=44.4
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEec
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~Vlt 211 (449)
....++||||||..+. +.++ ..-+..+|++|+||++. ..+. +.+.+.+++.+. ..+.|+|+|
T Consensus 78 ~~~~~~liDtPGh~~f------------~~~~-~~~~~~aD~allVVda~-~G~~~qt~~~~~~~~~~~--~~~iivviN 141 (406)
T TIGR02034 78 DKRKFIVADTPGHEQY------------TRNM-ATGASTADLAVLLVDAR-KGVLEQTRRHSYIASLLG--IRHVVLAVN 141 (406)
T ss_pred CCeEEEEEeCCCHHHH------------HHHH-HHHHhhCCEEEEEEECC-CCCccccHHHHHHHHHcC--CCcEEEEEE
Confidence 3457999999996442 1333 34578999999988743 3332 223344555443 346888999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|+|+...
T Consensus 142 K~D~~~~ 148 (406)
T TIGR02034 142 KMDLVDY 148 (406)
T ss_pred ecccccc
Confidence 9999853
No 218
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.87 E-value=4.6e-09 Score=87.55 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
+|+|+|..++||||||++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 219
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.85 E-value=9.3e-09 Score=98.86 Aligned_cols=138 Identities=24% Similarity=0.368 Sum_probs=74.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|.|+|..|+|||||||+|.+..+.+.......... ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~------------------------------------------~~ 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA------------------------------------------SI 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc------------------------------------------cc
Confidence 689999999999999999999887555411100000 00
Q ss_pred CCCCCcccccEEEEEecC-CCCCcEEEeCCCCCcCCcCC-CCCchHHHHHHHHHHHhc-------------CCCeEEEEE
Q 013120 116 GRTKQISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVEG-QPDSIVQDIENMVRSYIE-------------KPNCIILAI 180 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPGl~~~~~~~-q~~~~~~~~~~~~~~yi~-------------~~d~iIl~v 180 (449)
..+..+..... .+... ...+|++|||||+.+..... .-..+...+++--..|+. +.|++++++
T Consensus 44 ~~~~~i~~~~~--~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI 121 (281)
T PF00735_consen 44 SRTLEIEERTV--ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFI 121 (281)
T ss_dssp -SCEEEEEEEE--EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE
T ss_pred ccccceeeEEE--EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEE
Confidence 00000111111 11111 12369999999998643221 112233333433344433 246888888
Q ss_pred ecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 181 SPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 181 ~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.|....+. ...+..++.+.. ..++|-|+.|+|.+.+.
T Consensus 122 ~pt~~~L~-~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 122 PPTGHGLK-PLDIEFMKRLSK-RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp -TTSSSS--HHHHHHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred cCCCccch-HHHHHHHHHhcc-cccEEeEEecccccCHH
Confidence 77766554 555678888876 57899999999998754
No 220
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.85 E-value=2.4e-08 Score=104.24 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=50.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+++|||||..+. ...+..++..+|++|+|+++.. +. ......+.+.....+.|.++++||+|
T Consensus 78 ~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~-gv-~~~t~~l~~~~~~~~iPiiv~iNK~D 142 (526)
T PRK00741 78 DCLINLLDTPGHEDF-------------SEDTYRTLTAVDSALMVIDAAK-GV-EPQTRKLMEVCRLRDTPIFTFINKLD 142 (526)
T ss_pred CEEEEEEECCCchhh-------------HHHHHHHHHHCCEEEEEEecCC-CC-CHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 356999999998664 2346778899999999987554 33 23344455666667899999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 143 ~~~a 146 (526)
T PRK00741 143 RDGR 146 (526)
T ss_pred cccc
Confidence 8643
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.85 E-value=1.3e-08 Score=107.68 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..+. ...+..+++.+|+++|||++.. +.. .....+++.+...+.+.|+|+||+|
T Consensus 63 ~~kinlIDTPGh~DF-------------~~ev~~~l~~aD~alLVVDa~~-G~~-~qT~~~l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 63 GTKINIVDTPGHADF-------------GGEVERVLGMVDGVLLLVDASE-GPM-PQTRFVLKKALELGLKPIVVINKID 127 (594)
T ss_pred CEEEEEEECCCHHHH-------------HHHHHHHHHhCCEEEEEEeCCC-CCc-HHHHHHHHHHHHCCCCEEEEEECCC
Confidence 457999999998664 3446788999999999987543 332 2333445555556789999999999
Q ss_pred ccC
Q 013120 215 LMD 217 (449)
Q Consensus 215 ~~~ 217 (449)
+..
T Consensus 128 ~~~ 130 (594)
T TIGR01394 128 RPS 130 (594)
T ss_pred CCC
Confidence 864
No 222
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.84 E-value=2e-08 Score=98.97 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=62.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|++||.+|+|||||+|+|+|..........||+-|..-.+.-.+.. ++.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r-----------------~~~l~~--------- 56 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPR-----------------LDKLAE--------- 56 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEecccc-----------------chhhHH---------
Confidence 589999999999999999999987423333457777744332111100 000000
Q ss_pred hCCCCCcccccEEEEEecCC--C-CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 115 TGRTKQISSVPIHLSIYSPN--V-VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~--~-~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
++.|. . ..+.|+|+||+......+ +.+.+-....++++|++|+||+..
T Consensus 57 ---------------~~~p~~~~~a~i~lvD~pGL~~~a~~g------~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 57 ---------------IVKPKKIVPATIEFVDIAGLVKGASKG------EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ---------------hcCCccccCceEEEEECCCCCCCCChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11111 1 258999999999754331 223344566688999999998753
No 223
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.84 E-value=1.4e-08 Score=103.30 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc--ccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d--~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++|+||||..+. ...+..++..+|++||+|++.... ..+.+.+.++..+. ..+.++|+||+
T Consensus 80 ~~i~liDtPGh~~f-------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~ 144 (406)
T TIGR03680 80 RRVSFVDAPGHETL-------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKI 144 (406)
T ss_pred cEEEEEECCCHHHH-------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEcc
Confidence 46899999996442 223456677899999988755321 11223333332222 25689999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 145 Dl~~~ 149 (406)
T TIGR03680 145 DLVSK 149 (406)
T ss_pred ccCCH
Confidence 99854
No 224
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.84 E-value=9.6e-09 Score=98.02 Aligned_cols=124 Identities=25% Similarity=0.337 Sum_probs=76.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccc--CcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG--SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~--~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-|.+||-|||||||||++++.-. |.= .-.+|-.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn----------------------------------------- 197 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN----------------------------------------- 197 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc-----------------------------------------
Confidence 37899999999999999999854 211 112343331
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~ 191 (449)
.| .+.+ .....+++-|.||++..++.+-- + -.-..+.|.++..++.+++.+..+.. .++
T Consensus 198 -LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G~G--L----G~~FLrHIERt~vL~hviD~s~~~~~dp~~~ 258 (369)
T COG0536 198 -LG----------VVRV--DGGESFVVADIPGLIEGASEGVG--L----GLRFLRHIERTRVLLHVIDLSPIDGRDPIED 258 (369)
T ss_pred -cc----------EEEe--cCCCcEEEecCcccccccccCCC--c----cHHHHHHHHhhheeEEEEecCcccCCCHHHH
Confidence 12 1122 33446899999999988766421 1 11134556778889888886655421 122
Q ss_pred HHHHHHHhC---C--CCCceEEEeccccccCCCCc
Q 013120 192 AIKISREVD---P--TGERTFGVLTKIDLMDKGTD 221 (449)
Q Consensus 192 ~~~l~~~~~---~--~~~rti~VltK~D~~~~~~~ 221 (449)
...+..++. + ..++.++|+||+|+....++
T Consensus 259 ~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~ 293 (369)
T COG0536 259 YQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE 293 (369)
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH
Confidence 222333333 2 26899999999997655443
No 225
>PRK00007 elongation factor G; Reviewed
Probab=98.84 E-value=1.1e-08 Score=110.67 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..+.. . -+...+..+|++|+||+ +.... ..+...+++.+...+.+.|+++||+|
T Consensus 74 ~~~~~liDTPG~~~f~------------~-ev~~al~~~D~~vlVvd-a~~g~-~~qt~~~~~~~~~~~~p~iv~vNK~D 138 (693)
T PRK00007 74 DHRINIIDTPGHVDFT------------I-EVERSLRVLDGAVAVFD-AVGGV-EPQSETVWRQADKYKVPRIAFVNKMD 138 (693)
T ss_pred CeEEEEEeCCCcHHHH------------H-HHHHHHHHcCEEEEEEE-CCCCc-chhhHHHHHHHHHcCCCEEEEEECCC
Confidence 4579999999976531 1 26677888999989887 44344 44456677777777899999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 139 ~~~~ 142 (693)
T PRK00007 139 RTGA 142 (693)
T ss_pred CCCC
Confidence 8854
No 226
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=9.6e-09 Score=85.85 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHH
Q 013120 27 LPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKE 106 (449)
Q Consensus 27 ~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (449)
.+....-.-.|.|+|+.++||+|++-+..|..|-|.-..+ .
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsT---v------------------------------------ 54 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST---V------------------------------------ 54 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeee---e------------------------------------
Confidence 3344444458999999999999999999998873311000 0
Q ss_pred HHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc
Q 013120 107 IQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (449)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d 186 (449)
| +..++-.+ ..+....++.++||.|.... +.++..|++.++.+||+.+..|.+
T Consensus 55 ---------G----idFKvKTv-yr~~kRiklQiwDTagqEry-------------rtiTTayyRgamgfiLmyDitNee 107 (193)
T KOG0093|consen 55 ---------G----IDFKVKTV-YRSDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEE 107 (193)
T ss_pred ---------e----eeEEEeEe-eecccEEEEEEEecccchhh-------------hHHHHHHhhccceEEEEEecCCHH
Confidence 0 00000000 11122346899999998763 778999999999999999877654
Q ss_pred ccc--hHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 187 LAT--SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 187 ~~~--~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
-.+ +++.-..+.+.-...++|+|.||||+-+.
T Consensus 108 Sf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 108 SFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 322 23333444445557899999999998654
No 227
>PRK12739 elongation factor G; Reviewed
Probab=98.83 E-value=1.2e-08 Score=110.49 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
+...++||||||..+. ...+..++..+|++|+||++. ... ......+++.+...+.+.|+++||+
T Consensus 71 ~~~~i~liDTPG~~~f-------------~~e~~~al~~~D~~ilVvDa~-~g~-~~qt~~i~~~~~~~~~p~iv~iNK~ 135 (691)
T PRK12739 71 KGHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFDAV-SGV-EPQSETVWRQADKYGVPRIVFVNKM 135 (691)
T ss_pred CCEEEEEEcCCCHHHH-------------HHHHHHHHHHhCeEEEEEeCC-CCC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3457999999998652 224788899999999988743 333 3444556777777789999999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+...
T Consensus 136 D~~~~ 140 (691)
T PRK12739 136 DRIGA 140 (691)
T ss_pred CCCCC
Confidence 99853
No 228
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.83 E-value=3e-08 Score=102.43 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=57.4
Q ss_pred CCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEe
Q 013120 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVL 210 (449)
Q Consensus 133 ~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~Vl 210 (449)
.+...++||||||..+ ...+++.. +..+|+++|||++. .... +.+.+.++..+. -.+.|+|+
T Consensus 104 ~~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~allVVDa~-~G~~~qt~~~~~l~~~lg--~~~iIvvv 167 (474)
T PRK05124 104 TEKRKFIIADTPGHEQ------------YTRNMATG-ASTCDLAILLIDAR-KGVLDQTRRHSFIATLLG--IKHLVVAV 167 (474)
T ss_pred cCCcEEEEEECCCcHH------------HHHHHHHH-HhhCCEEEEEEECC-CCccccchHHHHHHHHhC--CCceEEEE
Confidence 3456799999999432 22344333 68999999988743 3332 223344555443 24688999
Q ss_pred ccccccCCCCcHH-HH---Hc----CcccccCCCeEEEEeCChhhhhc
Q 013120 211 TKIDLMDKGTDAA-DI---LE----GKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 211 tK~D~~~~~~~~~-~~---l~----~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
||+|+.....+.. ++ +. .........++.++...+.++..
T Consensus 168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 9999985332211 11 11 10001134566777766666543
No 229
>PLN03127 Elongation factor Tu; Provisional
Probab=98.83 E-value=2e-08 Score=102.80 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=46.9
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
...+++||||||..+. +.++.. -+..+|+++|+|+ ++... ..+..+++..+...+.+ .|+|+||
T Consensus 122 ~~~~i~~iDtPGh~~f------------~~~~~~-g~~~aD~allVVd-a~~g~-~~qt~e~l~~~~~~gip~iIvviNK 186 (447)
T PLN03127 122 AKRHYAHVDCPGHADY------------VKNMIT-GAAQMDGGILVVS-APDGP-MPQTKEHILLARQVGVPSLVVFLNK 186 (447)
T ss_pred CCeEEEEEECCCccch------------HHHHHH-HHhhCCEEEEEEE-CCCCC-chhHHHHHHHHHHcCCCeEEEEEEe
Confidence 3457999999998542 233333 3456999999887 44333 34445566666666777 4788999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+++.
T Consensus 187 iDlv~~ 192 (447)
T PLN03127 187 VDVVDD 192 (447)
T ss_pred eccCCH
Confidence 999853
No 230
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.8e-08 Score=84.26 Aligned_cols=122 Identities=19% Similarity=0.310 Sum_probs=86.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
.-|-.||+||+-++||+-|+..++.- +||-|.|.+-..-..|..+
T Consensus 5 kflfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktv---------------------------------- 49 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTV---------------------------------- 49 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEE----------------------------------
Confidence 45779999999999999999999965 5687776543333222221
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc-c
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA-T 189 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~-~ 189 (449)
++.+ +...|.|+||.|..+. +.++.+|.+.++++||+.+-..+. +. .
T Consensus 50 -----------------ev~g-ekiklqiwdtagqerf-------------rsitqsyyrsahalilvydiscqpsfdcl 98 (213)
T KOG0095|consen 50 -----------------EVNG-EKIKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPSFDCL 98 (213)
T ss_pred -----------------EECC-eEEEEEEeeccchHHH-------------HHHHHHHhhhcceEEEEEecccCcchhhh
Confidence 1111 2346899999987664 889999999999999998754432 11 2
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+++.-..++....--.|+|-||+|+.+..
T Consensus 99 pewlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 99 PEWLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHHHhhcceEEEeeccccchhhhh
Confidence 456655666666566788999999998754
No 231
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.82 E-value=7.5e-09 Score=97.96 Aligned_cols=89 Identities=25% Similarity=0.347 Sum_probs=60.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
-|+++||-||+|||||||+|+|..--+.+...+|..| .
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~------------------------------------------V 101 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP------------------------------------------V 101 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc------------------------------------------c
Confidence 4899999999999999999999764333333333322 1
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~ 184 (449)
.| +......+++|+|+||+......+... -..+.+.+++||.||+|++...
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEEEEecCC
Confidence 12 222345679999999999876554211 1236677889999999886543
No 232
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.82 E-value=1.6e-07 Score=91.99 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHH-hCCCCCceEEEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE-VDPTGERTFGVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~-~~~~~~rti~VltK~ 213 (449)
..++.||||+|+...... ....+|.+++++.+... +.++..+. .-... -++|+||+
T Consensus 148 g~d~viieT~Gv~qs~~~----------------i~~~aD~vlvv~~p~~g-----d~iq~~k~gi~E~a--DIiVVNKa 204 (332)
T PRK09435 148 GYDVILVETVGVGQSETA----------------VAGMVDFFLLLQLPGAG-----DELQGIKKGIMELA--DLIVINKA 204 (332)
T ss_pred CCCEEEEECCCCccchhH----------------HHHhCCEEEEEecCCch-----HHHHHHHhhhhhhh--heEEeehh
Confidence 468999999999963210 25579998888754332 22222221 11111 28999999
Q ss_pred cccCCCC--cHHHHHcCcc---c----ccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 214 DLMDKGT--DAADILEGKS---Y----RLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 214 D~~~~~~--~~~~~l~~~~---~----~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
|+..... .....+.... . ....+.+.+++.+..+++.+.+.+...
T Consensus 205 Dl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~ 258 (332)
T PRK09435 205 DGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH 258 (332)
T ss_pred cccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9886432 1111111110 0 011345567777777777766655543
No 233
>PRK10218 GTP-binding protein; Provisional
Probab=98.81 E-value=3.1e-08 Score=104.64 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=49.4
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
....+.||||||..+. ...+..+++.+|++|+|+++.. .... .....++.+...+.+.++|+||+
T Consensus 66 ~~~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVVDa~~-G~~~-qt~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 66 NDYRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVVDAFD-GPMP-QTRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred CCEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEEeccc-CccH-HHHHHHHHHHHcCCCEEEEEECc
Confidence 3457999999998764 3447789999999999987543 3222 22334444445688999999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 131 D~~~ 134 (607)
T PRK10218 131 DRPG 134 (607)
T ss_pred CCCC
Confidence 9864
No 234
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.81 E-value=2.2e-08 Score=88.25 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=55.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhC-CCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD-PTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~-~~~~rti~VltK 212 (449)
..+.++||+|... ..|.+.+|++|+|++..+.+-.. ...+..+.... ....++++|.||
T Consensus 47 ~~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 47 HLLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred EEEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 3588999999843 14667899999998755432111 12222222222 235789999999
Q ss_pred ccccCCC-Cc-----HHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 213 IDLMDKG-TD-----AADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 213 ~D~~~~~-~~-----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
.|+.... .. ..++.+ ......|+.+++.++.+++..+
T Consensus 109 ~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 109 DAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred HHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHH
Confidence 9985321 11 111111 1113568888887777665543
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=98.79 E-value=1.6e-08 Score=102.40 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti-~VltK 212 (449)
+...++||||||..+. +.. +..-+..+|.++|++++.. .. ..+..+.+..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh~~f------------~~~-~~~~~~~aD~~llVvda~~-g~-~~qt~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGHADY------------VKN-MITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCHHHH------------HHH-HHhhhccCCEEEEEEECCC-CC-chhHHHHHHHHHHcCCCeEEEEEEe
Confidence 4456899999997431 233 3355678999988887443 33 2333345555555677765 57999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 236
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.79 E-value=3.8e-08 Score=102.73 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
....+.|+||||..+. ...+..++..+|++|+|+++.. ... .....+.+.....+.++++++||+
T Consensus 78 ~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~-gv~-~~t~~l~~~~~~~~~PiivviNKi 142 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMVIDAAK-GVE-TRTRKLMEVTRLRDTPIFTFMNKL 142 (527)
T ss_pred CCeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEEEECCC-CCC-HHHHHHHHHHHhcCCCEEEEEECc
Confidence 3467999999998653 2336778899999999987654 222 223334455555678999999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9863
No 237
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.79 E-value=1e-07 Score=93.83 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=88.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|+|+|.-++|||||+|++++.-++|.=++.--| +-.++ +......
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k-------------------------------~Ra~D---ELpqs~~ 64 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK-------------------------------ERAQD---ELPQSAA 64 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHH-------------------------------hHHHh---ccCcCCC
Confidence 7999999999999999999998666643211000 00000 0001111
Q ss_pred C---C---CCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchH----------------HHHHHHHHHHhc-C
Q 013120 116 G---R---TKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV----------------QDIENMVRSYIE-K 172 (449)
Q Consensus 116 g---~---~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~----------------~~~~~~~~~yi~-~ 172 (449)
| . .+-+....+.+........++.||||+|+......|.-+.-. +..+-=+++-|. +
T Consensus 65 GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dh 144 (492)
T TIGR02836 65 GKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEH 144 (492)
T ss_pred CCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhc
Confidence 2 1 112233445554444444579999999998766544322111 111222677788 8
Q ss_pred CCeEEEEEecCC------CcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 173 PNCIILAISPAN------QDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 173 ~d~iIl~v~~a~------~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
++..|+++++.. .++ .....++..++...++|.++|+||.|-..+.
T Consensus 145 stIgivVtTDgsi~dI~Re~y-~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e 196 (492)
T TIGR02836 145 STIGVVVTTDGTITDIPREDY-VEAEERVIEELKELNKPFIILLNSTHPYHPE 196 (492)
T ss_pred CcEEEEEEcCCCccccccccc-hHHHHHHHHHHHhcCCCEEEEEECcCCCCch
Confidence 887777764442 122 2334568888888999999999999955333
No 238
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.78 E-value=7.8e-08 Score=82.11 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=96.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
-+|.++|--||||||+++.+.|.+. +...+|..- +
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf---~--------------------------------------- 51 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF---Q--------------------------------------- 51 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccce---e---------------------------------------
Confidence 4899999999999999999999862 221222211 0
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
-..+. .....++++|.-|-... ++..++|...+|++|+||+++ .....++...
T Consensus 52 --------Iktl~-----~~~~~L~iwDvGGq~~l-------------r~~W~nYfestdglIwvvDss-D~~r~~e~~~ 104 (185)
T KOG0073|consen 52 --------IKTLE-----YKGYTLNIWDVGGQKTL-------------RSYWKNYFESTDGLIWVVDSS-DRMRMQECKQ 104 (185)
T ss_pred --------eEEEE-----ecceEEEEEEcCCcchh-------------HHHHHHhhhccCeEEEEEECc-hHHHHHHHHH
Confidence 00011 12346899999887653 788999999999999999874 3444455544
Q ss_pred HHHHh----CCCCCceEEEeccccccCCCC--cHHHHHcCcccccCC--CeEEEEeCChhhhhccCCHHHHHHHH
Q 013120 195 ISREV----DPTGERTFGVLTKIDLMDKGT--DAADILEGKSYRLKF--PWIGVVNRSQADINKNVDMIAARRRE 261 (449)
Q Consensus 195 l~~~~----~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~--g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (449)
.++.+ .-.|.+.+++.||.|+...-. ++...+.-....... ..+.+...+++++..+++++.....+
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 44333 233789999999999873211 122222211221222 33455666777777777666555544
No 239
>PLN00023 GTP-binding protein; Provisional
Probab=98.78 E-value=3e-08 Score=95.93 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=45.8
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC---------------
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--------------- 201 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~--------------- 201 (449)
.+.|+||+|-... +.+...|+++++++|+|++..+.+.. .....++..+..
T Consensus 84 ~LqIWDTAGqErf-------------rsL~~~yyr~AdgiILVyDITdr~SF-enL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 84 FVELWDVSGHERY-------------KDCRSLFYSQINGVIFVHDLSQRRTK-TSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEECCCChhh-------------hhhhHHhccCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcccccccccccccC
Confidence 4889999997654 56788899999999999875543211 111123332221
Q ss_pred CCCceEEEeccccccCC
Q 013120 202 TGERTFGVLTKIDLMDK 218 (449)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (449)
...++++|.||+|+...
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13579999999998653
No 240
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.77 E-value=3e-08 Score=82.93 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=53.8
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhC---CCCCceEEEe
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD---PTGERTFGVL 210 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~---~~~~rti~Vl 210 (449)
+...+.++|+||-... +.|...|.+..++|+++|+++..+-.+-..-++-..++ -.+.++++.-
T Consensus 63 gnvtiklwD~gGq~rf-------------rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQPRF-------------RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred CceEEEEEecCCCccH-------------HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 3456789999998875 78899999999999999998875533332223333333 3478999999
Q ss_pred ccccccCCC
Q 013120 211 TKIDLMDKG 219 (449)
Q Consensus 211 tK~D~~~~~ 219 (449)
||.|+.+.-
T Consensus 130 nK~d~~~AL 138 (186)
T KOG0075|consen 130 NKIDLPGAL 138 (186)
T ss_pred ccccCcccc
Confidence 999987543
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.77 E-value=8.6e-08 Score=83.81 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=93.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-..|+|+|.+++||+|++.+++.... +.-.+..+..-.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~---------------------------------------- 47 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSG---------------------------------------- 47 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc-ceeecccccccc----------------------------------------
Confidence 557899999999999999999998752 111111110000
Q ss_pred hhhC-CCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 113 RETG-RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 113 ~~~g-~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
.+ ....+..+.-.+++. +...+.|+||||..+. +-|..-+.+.+..+|++|+++. .....
T Consensus 48 --k~kr~tTva~D~g~~~~~--~~~~v~LfgtPGq~RF-------------~fm~~~l~~ga~gaivlVDss~--~~~~~ 108 (187)
T COG2229 48 --KGKRPTTVAMDFGSIELD--EDTGVHLFGTPGQERF-------------KFMWEILSRGAVGAIVLVDSSR--PITFH 108 (187)
T ss_pred --ccccceeEeecccceEEc--CcceEEEecCCCcHHH-------------HHHHHHHhCCcceEEEEEecCC--CcchH
Confidence 00 001122222222222 2346899999998875 6677788889999888886443 23335
Q ss_pred HHHHHHHhCCCC-CceEEEeccccccCCC--CcHHHHHcCcccccCCCeEEEEeCCh
Q 013120 192 AIKISREVDPTG-ERTFGVLTKIDLMDKG--TDAADILEGKSYRLKFPWIGVVNRSQ 245 (449)
Q Consensus 192 ~~~l~~~~~~~~-~rti~VltK~D~~~~~--~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (449)
+..+...+.... .|.++.+||.|+.+.- +++.+++.... +..+.++...+..
T Consensus 109 a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~e~ 163 (187)
T COG2229 109 AEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDATEG 163 (187)
T ss_pred HHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecccc
Confidence 666777776665 8999999999997543 34556554321 4556665555443
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.77 E-value=2.5e-08 Score=107.12 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEec
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~Vlt 211 (449)
...+++||||||..+. ...+. ..+..+|+++|||++. .... +.+.+.++..+. ..+.|+|+|
T Consensus 102 ~~~~~~liDtPG~~~f------------~~~~~-~~~~~aD~~llVvda~-~g~~~~t~e~~~~~~~~~--~~~iivvvN 165 (632)
T PRK05506 102 PKRKFIVADTPGHEQY------------TRNMV-TGASTADLAIILVDAR-KGVLTQTRRHSFIASLLG--IRHVVLAVN 165 (632)
T ss_pred CCceEEEEECCChHHH------------HHHHH-HHHHhCCEEEEEEECC-CCccccCHHHHHHHHHhC--CCeEEEEEE
Confidence 4557999999996431 13333 3578999998888743 3322 223344444442 256888999
Q ss_pred cccccC
Q 013120 212 KIDLMD 217 (449)
Q Consensus 212 K~D~~~ 217 (449)
|+|+..
T Consensus 166 K~D~~~ 171 (632)
T PRK05506 166 KMDLVD 171 (632)
T ss_pred eccccc
Confidence 999975
No 243
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.77 E-value=1.8e-08 Score=82.19 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=26.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~ 64 (449)
.+|++||..++||+||.++|-|.+.+++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT 31 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT 31 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc
Confidence 479999999999999999999998876654
No 244
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.76 E-value=2.3e-08 Score=89.08 Aligned_cols=117 Identities=20% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-|.|+++|..+||||+|+..|...... .++|........
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~~------------------------------------- 41 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIAY------------------------------------- 41 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC-------------------------------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCceE-------------------------------------
Confidence 478999999999999999999976432 222222211110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHH--HhcCCCeEEEEEecCCCcccchH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRS--YIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~--yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
.+..+....+.+||+||-.+.. ..+... |+.++.+||+||+++...-.-.+
T Consensus 42 ---------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~ 94 (181)
T PF09439_consen 42 ---------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRD 94 (181)
T ss_dssp ---------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHH
T ss_pred ---------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHH
Confidence 0112334578999999998743 233333 68899999999987642111112
Q ss_pred HHHHH------HHhCCCCCceEEEeccccccCC
Q 013120 192 AIKIS------REVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~------~~~~~~~~rti~VltK~D~~~~ 218 (449)
+.+++ ....+.+.|++++.||.|+...
T Consensus 95 ~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 95 VAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 22211 1223568899999999998753
No 245
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.76 E-value=1.4e-08 Score=103.94 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=43.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc----chHHHHHHHHhCCCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA----TSDAIKISREVDPTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~----~~~~~~l~~~~~~~~~rti~Vl 210 (449)
...++||||||..+. ......++..+|++|||++..+.+.. +...+.+++.+. ..+.++|+
T Consensus 84 ~~~i~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRDF-------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHHH-------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEEE
Confidence 457999999995431 12244467889999999886553211 112223344332 25788999
Q ss_pred ccccccC
Q 013120 211 TKIDLMD 217 (449)
Q Consensus 211 tK~D~~~ 217 (449)
||+|+.+
T Consensus 149 NK~Dl~~ 155 (426)
T TIGR00483 149 NKMDSVN 155 (426)
T ss_pred EChhccC
Confidence 9999974
No 246
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.76 E-value=2.2e-08 Score=101.51 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti-~VltK~ 213 (449)
...++||||||..+. +.. ....+..+|++|+|+++. ... ..+..+.+..+...+.+.+ +|+||+
T Consensus 74 ~~~~~liDtpGh~~f------------~~~-~~~~~~~~D~~ilVvda~-~g~-~~qt~e~l~~~~~~gi~~iIvvvNK~ 138 (394)
T TIGR00485 74 NRHYAHVDCPGHADY------------VKN-MITGAAQMDGAILVVSAT-DGP-MPQTREHILLARQVGVPYIVVFLNKC 138 (394)
T ss_pred CEEEEEEECCchHHH------------HHH-HHHHHhhCCEEEEEEECC-CCC-cHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 456899999997542 123 234456889998988643 322 2344455555555577765 689999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 139 Dl~~~ 143 (394)
T TIGR00485 139 DMVDD 143 (394)
T ss_pred ccCCH
Confidence 99854
No 247
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.75 E-value=2.9e-08 Score=92.68 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=45.0
Q ss_pred cCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEe
Q 013120 132 SPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVL 210 (449)
Q Consensus 132 ~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~Vl 210 (449)
.+....++++||||.. .. +...++.+|++++++++. ..... ....+...+...+.+ +++|+
T Consensus 79 ~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVllviDa~-~~~~~-~~~~i~~~l~~~g~p~vi~Vv 140 (225)
T cd01882 79 TGKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLLLIDAS-FGFEM-ETFEFLNILQVHGFPRVMGVL 140 (225)
T ss_pred ecCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEEEEecC-cCCCH-HHHHHHHHHHHcCCCeEEEEE
Confidence 3455679999999743 11 234467899998888744 33332 334455555555666 45699
Q ss_pred ccccccCCC
Q 013120 211 TKIDLMDKG 219 (449)
Q Consensus 211 tK~D~~~~~ 219 (449)
||+|++.+.
T Consensus 141 nK~D~~~~~ 149 (225)
T cd01882 141 THLDLFKKN 149 (225)
T ss_pred eccccCCcH
Confidence 999998543
No 248
>PRK12736 elongation factor Tu; Reviewed
Probab=98.75 E-value=2.5e-08 Score=101.00 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
....++||||||..+. +..+ ..-+..+|++++||++. ... .....+.+..+...+.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~~f------------~~~~-~~~~~~~d~~llVvd~~-~g~-~~~t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHADY------------VKNM-ITGAAQMDGAILVVAAT-DGP-MPQTREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHHHH------------HHHH-HHHHhhCCEEEEEEECC-CCC-chhHHHHHHHHHHcCCCEEEEEEEe
Confidence 3457899999995431 2332 33357889998888743 332 23344455555555777 5788999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999743
No 249
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.73 E-value=3.3e-08 Score=93.36 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=92.9
Q ss_pred CCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHH
Q 013120 28 PTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEI 107 (449)
Q Consensus 28 ~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (449)
.....+.|.|+|||-+||||||||++|++-.++|.+.-..|--||--.
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~-------------------------------- 219 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS-------------------------------- 219 (410)
T ss_pred ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh--------------------------------
Confidence 344568899999999999999999999999998988776665552100
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Q 013120 108 QDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL 187 (449)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~ 187 (449)
..-|......+.||-|+.+.- |..+...++. +..-+.++|.|+-+++..+.++
T Consensus 220 ----------------------a~Lpsg~~vlltDTvGFisdL----P~~LvaAF~A-TLeeVaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 220 ----------------------AHLPSGNFVLLTDTVGFISDL----PIQLVAAFQA-TLEEVAEADLLLHVVDISHPNA 272 (410)
T ss_pred ----------------------ccCCCCcEEEEeechhhhhhC----cHHHHHHHHH-HHHHHhhcceEEEEeecCCccH
Confidence 111233457899999998743 4446665554 6777889999999998777665
Q ss_pred cch--HHHHHHHHhCC----CCCceEEEeccccccC
Q 013120 188 ATS--DAIKISREVDP----TGERTFGVLTKIDLMD 217 (449)
Q Consensus 188 ~~~--~~~~l~~~~~~----~~~rti~VltK~D~~~ 217 (449)
..+ ..+..+++++- ...++|=|=||+|...
T Consensus 273 e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 273 EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 543 34555666653 2456777888888654
No 250
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.72 E-value=1.7e-07 Score=86.91 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH---HHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI---SREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l---~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...|+..++++|++++..+.. .-.....+ ..... ...+.++|.||
T Consensus 58 i~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEKF-------------GGLRDGYYIKGQCAIIMFDVTSRI-TYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 45889999996442 344567888999998888644321 11111111 12222 25688889999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
+|+.+..... +... .....+..|+.+++.++.+++...
T Consensus 123 ~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 123 VDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred ccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9986432111 1111 011233567777777766654433
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=98.71 E-value=4.4e-08 Score=100.93 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
....++||||||..+. +.+ +..-+..+|++|+||++. ... .....+.+..+...+.+ .|+++||
T Consensus 142 ~~~~i~liDtPGh~~f------------~~~-~~~g~~~aD~ailVVda~-~G~-~~qt~e~~~~~~~~gi~~iIvvvNK 206 (478)
T PLN03126 142 ENRHYAHVDCPGHADY------------VKN-MITGAAQMDGAILVVSGA-DGP-MPQTKEHILLAKQVGVPNMVVFLNK 206 (478)
T ss_pred CCcEEEEEECCCHHHH------------HHH-HHHHHhhCCEEEEEEECC-CCC-cHHHHHHHHHHHHcCCCeEEEEEec
Confidence 3457999999997652 133 345567899999988644 333 23344455555555776 7789999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 207 ~Dl~~~ 212 (478)
T PLN03126 207 QDQVDD 212 (478)
T ss_pred ccccCH
Confidence 999863
No 252
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.71 E-value=8.8e-08 Score=104.16 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
....+.||||||..+. ...+..++..+|++|+|++.. ..+ ..+...+++.....+.+.++|+||+
T Consensus 84 ~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvda~-~g~-~~~t~~~~~~~~~~~~p~ivviNKi 148 (720)
T TIGR00490 84 NEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVCAV-EGV-MPQTETVLRQALKENVKPVLFINKV 148 (720)
T ss_pred CceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEecC-CCC-CccHHHHHHHHHHcCCCEEEEEECh
Confidence 3457999999999874 234678899999999988643 233 2333445555545567889999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|...
T Consensus 149 D~~~ 152 (720)
T TIGR00490 149 DRLI 152 (720)
T ss_pred hccc
Confidence 9863
No 253
>PRK00049 elongation factor Tu; Reviewed
Probab=98.69 E-value=4.6e-08 Score=99.08 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti-~VltK 212 (449)
...+++|+||||..+. +.. +...+..+|++++++++.. .. ......++..+...+.+.+ +++||
T Consensus 73 ~~~~i~~iDtPG~~~f------------~~~-~~~~~~~aD~~llVVDa~~-g~-~~qt~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 73 EKRHYAHVDCPGHADY------------VKN-MITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCeEEEEEECCCHHHH------------HHH-HHhhhccCCEEEEEEECCC-CC-chHHHHHHHHHHHcCCCEEEEEEee
Confidence 3457899999997531 233 3345789999999887543 22 3344445555555677875 68999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+..
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99975
No 254
>PRK13351 elongation factor G; Reviewed
Probab=98.69 E-value=1.1e-07 Score=103.18 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.||||||..+. ...+..+++.+|++|+|++.... . ......+.+.+...+.+.++|+||+|
T Consensus 72 ~~~i~liDtPG~~df-------------~~~~~~~l~~aD~~ilVvd~~~~-~-~~~~~~~~~~~~~~~~p~iiviNK~D 136 (687)
T PRK13351 72 NHRINLIDTPGHIDF-------------TGEVERSLRVLDGAVVVFDAVTG-V-QPQTETVWRQADRYGIPRLIFINKMD 136 (687)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEEeCCCC-C-CHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 457999999998753 34578899999999998875432 2 23334455556666889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 137 ~~~~ 140 (687)
T PRK13351 137 RVGA 140 (687)
T ss_pred CCCC
Confidence 8753
No 255
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.68 E-value=9.5e-08 Score=97.20 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCC-CceEEEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~-~rti~VltK~D 214 (449)
..++|+||||..+. .......+..+|++|++++... ..........+..+...+ .+.++|+||+|
T Consensus 85 ~~i~liDtPG~~~f-------------~~~~~~~~~~~D~~llVVDa~~-~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 85 RRVSFVDAPGHETL-------------MATMLSGAALMDGAILVIAANE-PCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cEEEEEECCCHHHH-------------HHHHHHHHhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 46899999994321 1112333456799988887543 221222222333333333 46899999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+.+.
T Consensus 151 l~~~ 154 (411)
T PRK04000 151 LVSK 154 (411)
T ss_pred cccc
Confidence 9864
No 256
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.1e-07 Score=82.93 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+-.++++|+.++|||.||-..+...|-|.-.. .|-+ +|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~-------TiGv--------ef-------------------------- 43 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL-------TIGV--------EF-------------------------- 43 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc-------eeee--------ee--------------------------
Confidence 455789999999999999999999998544321 0100 00
Q ss_pred hhhC-CCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch-
Q 013120 113 RETG-RTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (449)
Q Consensus 113 ~~~g-~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~- 190 (449)
| +...+...+ ..|.++||.|.... ++++++|++.+-..|||.+-.+.+-.+.
T Consensus 44 ---g~r~~~id~k~----------IKlqiwDtaGqe~f-------------rsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 44 ---GARMVTIDGKQ----------IKLQIWDTAGQESF-------------RSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred ---ceeEEEEcCce----------EEEEEEecCCcHHH-------------HHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 1 001111222 24789999998764 8889999999998889987655443332
Q ss_pred -HHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 191 -DAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 191 -~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.++.=+++......-++++-||+|+....
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 33333444443456677788999997654
No 257
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.66 E-value=1.4e-07 Score=102.89 Aligned_cols=133 Identities=14% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+...|+|+|+.++|||||+++|+... |..++.- . .+..+.|+....
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~------------g~~~~~D~~~~E-------- 64 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------A------------GEQLALDFDEEE-------- 64 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------c------------CcceecCccHHH--------
Confidence 45689999999999999999998643 2211100 0 001112222111
Q ss_pred hhhCCCCCcccccEEEEEe-cCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 113 RETGRTKQISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
+..| .++....+.+... ......++||||||..+. ...+...+..+|++|+||++.. .. ...
T Consensus 65 ~~rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvda~~-g~-~~~ 127 (731)
T PRK07560 65 QARG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVDAVE-GV-MPQ 127 (731)
T ss_pred HHhh--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEECCC-CC-Ccc
Confidence 1112 1122222333221 122446899999999874 2346778899999999887443 33 233
Q ss_pred HHHHHHHhCCCCCceEEEecccccc
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
...+++.....+.+.|+++||+|..
T Consensus 128 t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 128 TETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHHcCCCeEEEEECchhh
Confidence 3445555444467889999999976
No 258
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.65 E-value=1.7e-07 Score=87.06 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=92.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...|++++.|..|+|||||||.++.....- . .....|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~-~--t~k~K~---------------------------------------- 170 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIA-D--TSKSKN---------------------------------------- 170 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhh-h--hcCCCC----------------------------------------
Confidence 456899999999999999999999765310 0 000011
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCC---eEEEEEecCCCccc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPN---CIILAISPANQDLA 188 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d---~iIl~v~~a~~d~~ 188 (449)
|.++.+.. ..-...+.+||+||+...... .+..+.+..+++.|+.+-+ .+.|++ ++...+.
T Consensus 171 ----g~Tq~in~--------f~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLv-d~sv~i~ 234 (320)
T KOG2486|consen 171 ----GKTQAINH--------FHVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLV-DASVPIQ 234 (320)
T ss_pred ----ccceeeee--------eeccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeee-eccCCCC
Confidence 21111110 011235899999996654322 2355566889999976543 233333 3444443
Q ss_pred chHHHHHHHHhCCCCCceEEEeccccccCCCCc--------HHHHHc---CcccccCCCeEEEEeCChhhhhc
Q 013120 189 TSDAIKISREVDPTGERTFGVLTKIDLMDKGTD--------AADILE---GKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 189 ~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~--------~~~~l~---~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
.-+ ...+..+...+-++.+|+||+|....... ....+. .......++|.-+..++..+++.
T Consensus 235 ~~D-~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~ 306 (320)
T KOG2486|consen 235 PTD-NPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDL 306 (320)
T ss_pred CCC-hHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCcee
Confidence 333 33566677778999999999998754321 100011 11233445677666666655543
No 259
>PTZ00416 elongation factor 2; Provisional
Probab=98.64 E-value=1.2e-07 Score=104.55 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..++|+||||..+.. .-+...++.+|++|+||++ ...+.. ....+++.+...+.+.|+++||+|+
T Consensus 92 ~~i~liDtPG~~~f~-------------~~~~~al~~~D~ailVvda-~~g~~~-~t~~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVDFS-------------SEVTAALRVTDGALVVVDC-VEGVCV-QTETVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHhHH-------------HHHHHHHhcCCeEEEEEEC-CCCcCc-cHHHHHHHHHHcCCCEEEEEEChhh
Confidence 348999999997642 2256778999999888864 444433 3445777777778899999999998
Q ss_pred c
Q 013120 216 M 216 (449)
Q Consensus 216 ~ 216 (449)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 260
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.63 E-value=3.7e-08 Score=86.70 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=24.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~ 64 (449)
.|+++|.+|+|||||+|+|.|....+++.
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~~~ 132 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVAP 132 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceeeCC
Confidence 68899999999999999999987655443
No 261
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.63 E-value=1.4e-07 Score=104.14 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=49.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..++||||||..+.. .+ +...++.+|+.|+||++. .... .....+.+.+...+.+.|+++||+|.
T Consensus 98 ~~inliDtPGh~dF~------------~e-~~~al~~~D~ailVvda~-~Gv~-~~t~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDFS------------SE-VTAALRITDGALVVVDCI-EGVC-VQTETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHHH------------HH-HHHHHhhcCEEEEEEECC-CCCc-ccHHHHHHHHHHCCCCEEEEEECCcc
Confidence 457999999987642 22 566678999999988744 3443 33445677777778999999999998
Q ss_pred c
Q 013120 216 M 216 (449)
Q Consensus 216 ~ 216 (449)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 262
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.63 E-value=5.8e-08 Score=86.61 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~ 64 (449)
.+++|+|.+|+|||||+|+|+|....+++.
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 589999999999999999999987655543
No 263
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.60 E-value=1.2e-07 Score=80.86 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=65.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHH-hC-CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-VD-PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~-~~-~~~~rti~Vlt 211 (449)
..|.|+||.|..+. +.++++|.+++-.++++.+-.|..-.. ..+++-|+. +. |...-..+|-+
T Consensus 58 iklqlwdtagqerf-------------rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 58 IKLQLWDTAGQERF-------------RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred EEEEEeeccchHHH-------------HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 46899999997764 889999999999888888766542211 112222222 22 33333455789
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|.|+........+--+......+.-|+..+.+++.+++....++..
T Consensus 125 KsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 125 KSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred ccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHH
Confidence 9999743321111111112345566888888888777665555443
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.59 E-value=2.8e-07 Score=94.45 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++|||+||..+ .+++ +..-+..+|.++|||++...... +.+.+.++..+. -.+.|+|+||+
T Consensus 117 ~~i~~IDtPGH~~------------fi~~-m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 117 RHVSFVDCPGHDI------------LMAT-MLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred ceEeeeeCCCHHH------------HHHH-HHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 3689999999533 2233 33446689999888865432112 223333333332 24688999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99853
No 265
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=7.4e-08 Score=84.55 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-cccccc
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRP 71 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p 71 (449)
..++++++|.+|+|||||+|+|+|...++++.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 457899999999999999999999775555544 344444
No 266
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.56 E-value=4.1e-06 Score=81.75 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHHhCCCCCceEEEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~-l~~~~~~~~~rti~VltK~ 213 (449)
..++.||||||+.... ...+..+|.++++..+... +.++ ....+ ...+.++|+||+
T Consensus 126 g~D~viidT~G~~~~e----------------~~i~~~aD~i~vv~~~~~~-----~el~~~~~~l--~~~~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----------------VDIANMADTFVVVTIPGTG-----DDLQGIKAGL--MEIADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhh----------------hHHHHhhceEEEEecCCcc-----HHHHHHHHHH--hhhccEEEEEcc
Confidence 4689999999976421 1235678888777544321 2221 12222 246679999999
Q ss_pred cccCCCCcH--HHH----Hc---CcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 214 DLMDKGTDA--ADI----LE---GKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 214 D~~~~~~~~--~~~----l~---~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|+....... ... +. .........++.++..++.+++.+...+..
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 998543210 000 01 100112224677888887777766555443
No 267
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=4.9e-07 Score=91.51 Aligned_cols=156 Identities=19% Similarity=0.289 Sum_probs=99.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+-|-|+|+|+--.||||||.+|-+..+-+...|--|..-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI----------------------------------------- 42 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI----------------------------------------- 42 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe-----------------------------------------
Confidence 679999999999999999999998877555555433222
Q ss_pred hhhCCCCCcccccEEEEEecC--CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~--~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
| -..+..+ ..+.|+|+||||--.++ .|=.+=.+-+|.+||||. ++ |....
T Consensus 43 ---G----------A~~v~~~~~~~~~itFiDTPGHeAFt-------------~mRaRGa~vtDIaILVVa-~d-DGv~p 94 (509)
T COG0532 43 ---G----------AYQVPLDVIKIPGITFIDTPGHEAFT-------------AMRARGASVTDIAILVVA-AD-DGVMP 94 (509)
T ss_pred ---e----------eEEEEeccCCCceEEEEcCCcHHHHH-------------HHHhcCCccccEEEEEEE-cc-CCcch
Confidence 1 1112222 45789999999976653 222222356899999884 33 44445
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCCc--HHHHHcCccccc----CCCeEEEEeCChhhhhccCCHHHH
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRL----KFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l----~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
+..+-...+...+.|+++.+||+|+.+..-+ ..++.+....+- ...++++++..+.++..+...+..
T Consensus 95 QTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 95 QTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred hHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 5555555566668999999999999854322 122222111111 134667777777888877665443
No 268
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.55 E-value=1.1e-07 Score=80.81 Aligned_cols=117 Identities=21% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-.-.|.++|+.++||||||-+++.-.|=|-.+ +
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~-------~---------------------------------------- 42 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHP-------T---------------------------------------- 42 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCC-------c----------------------------------------
Confidence 44689999999999999999999876622211 1
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+.++...+-.+.+.+ ....|.|+||.|..+. +.++-+|.+.+..||+|.+-...|-...-
T Consensus 43 -----tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErF-------------RtLTpSyyRgaqGiIlVYDVT~Rdtf~kL- 102 (209)
T KOG0080|consen 43 -----TIGVDFKVKVMQVDG-KRLKLAIWDTAGQERF-------------RTLTPSYYRGAQGIILVYDVTSRDTFVKL- 102 (209)
T ss_pred -----eeeeeEEEEEEEEcC-ceEEEEEEeccchHhh-------------hccCHhHhccCceeEEEEEccchhhHHhH-
Confidence 111111222222222 2346999999998775 77899999999999999875544322222
Q ss_pred HHHHHHhCCC----CCceEEEecccccc
Q 013120 193 IKISREVDPT----GERTFGVLTKIDLM 216 (449)
Q Consensus 193 ~~l~~~~~~~----~~rti~VltK~D~~ 216 (449)
-.++++++.. ..-.++|-||+|.-
T Consensus 103 d~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 103 DIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred HHHHHHHHhhcCCccHhHhhhcccccch
Confidence 1256666643 23356788999954
No 269
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.52 E-value=4.3e-07 Score=93.18 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=46.4
Q ss_pred CCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-----chHHHHHHHHhCCCCC-ce
Q 013120 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPTGE-RT 206 (449)
Q Consensus 133 ~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-----~~~~~~l~~~~~~~~~-rt 206 (449)
.....++|+||||..+. ...+..++..+|+.||||++....+. ..+..+.+..+...+. +.
T Consensus 82 ~~~~~i~liDtPGh~df-------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~i 148 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDF-------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQM 148 (447)
T ss_pred CCCEEEEEEECCCHHHH-------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcE
Confidence 34457999999997653 23356678899999999875542221 1233334444444466 56
Q ss_pred EEEecccccc
Q 013120 207 FGVLTKIDLM 216 (449)
Q Consensus 207 i~VltK~D~~ 216 (449)
|+++||+|+.
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8889999976
No 270
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.51 E-value=3.2e-07 Score=83.40 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
.+++++|.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998754
No 271
>PRK12740 elongation factor G; Reviewed
Probab=98.51 E-value=4.6e-07 Score=98.22 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=50.8
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..+. ...+..++..+|++|+++++.. +. ......+.+.+...+.+.++|+||+|
T Consensus 59 ~~~i~liDtPG~~~~-------------~~~~~~~l~~aD~vllvvd~~~-~~-~~~~~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 59 GHKINLIDTPGHVDF-------------TGEVERALRVLDGAVVVVCAVG-GV-EPQTETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHhCeEEEEEeCCC-Cc-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457999999998652 3346778899999999987554 32 33444555666666889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
....
T Consensus 124 ~~~~ 127 (668)
T PRK12740 124 RAGA 127 (668)
T ss_pred CCCC
Confidence 8753
No 272
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.3e-07 Score=79.55 Aligned_cols=147 Identities=17% Similarity=0.263 Sum_probs=91.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+++|--+|||||++..|--..+ +|-.||
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~-------vttvPT------------------------------------------- 48 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTVPT------------------------------------------- 48 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCc-------ccCCCc-------------------------------------------
Confidence 899999999999999998875543 232442
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
.+|.-..+.+ ....++++|.-|..+. +.+.+.|.++.+.+|+||+++..+.-....-++
T Consensus 49 ---iGfnVE~v~y-----kn~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL 107 (181)
T KOG0070|consen 49 ---IGFNVETVEY-----KNISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEEL 107 (181)
T ss_pred ---cccceeEEEE-----cceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHH
Confidence 1222222222 1456899999998764 677999999999999999876544332222234
Q ss_pred HHHhC---CCCCceEEEeccccccCCCC--cHHHHHcCcccccCCCeE--EEEeCChhhhhccCCH
Q 013120 196 SREVD---PTGERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWI--GVVNRSQADINKNVDM 254 (449)
Q Consensus 196 ~~~~~---~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~--~v~~~s~~~~~~~~~~ 254 (449)
.+.+. ..+.++++..||.|+...-+ +..+.+.-..... ..|+ +..+.+++++.++.++
T Consensus 108 ~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~w 172 (181)
T KOG0070|consen 108 HRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDW 172 (181)
T ss_pred HHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHH
Confidence 44343 34678999999999875433 2333333222222 4555 3344555555444443
No 273
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.48 E-value=1.2e-06 Score=84.77 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCCcCCcCCCC-CchHHHHHHHHHHHhc--------------CCCeEEEEEecCCCcccchHHHHHHHHhC
Q 013120 136 VNLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISREVD 200 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~-~~~~~~~~~~~~~yi~--------------~~d~iIl~v~~a~~d~~~~~~~~l~~~~~ 200 (449)
.+|++|||||+.+.-..... +-+..-+++.-..|+. +.+++++++.|....+.. -.+..++.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~-~DIe~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKP-LDIEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCH-HHHHHHHHHh
Confidence 36999999999876544221 2244445555566653 346888888877766654 4455777776
Q ss_pred CCCCceEEEeccccccCCC
Q 013120 201 PTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (449)
. ..+.|-|+.|+|.+...
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 5 67899999999998654
No 274
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=3e-07 Score=79.39 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFL 60 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~l 60 (449)
.++++|.+|+|||||+|+|+|....
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 8999999999999999999998753
No 275
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=7.8e-07 Score=86.74 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=55.9
Q ss_pred CCcEEEeCCCCCcCCcCCCC-CchHHHHHHHHHHHhc-------------CCCeEEEEEecCCCcccchHHHHHHHHhCC
Q 013120 136 VNLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYIE-------------KPNCIILAISPANQDLATSDAIKISREVDP 201 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~-~~~~~~~~~~~~~yi~-------------~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~ 201 (449)
.+||+|||||+.+.-..... .-+..-+.+.-..|+. ..+|+++++.|....+..- ...+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~-Di~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPL-DIEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHh-hHHHHHHHhc
Confidence 36999999999876544221 2244445555556643 4578888888877655443 3446666654
Q ss_pred CCCceEEEeccccccCCCC
Q 013120 202 TGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 202 ~~~rti~VltK~D~~~~~~ 220 (449)
.-++|-|+.|+|.+.+++
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 689999999999987654
No 276
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=92.30 Aligned_cols=312 Identities=26% Similarity=0.289 Sum_probs=225.1
Q ss_pred eeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHH
Q 013120 87 AEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 166 (449)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~ 166 (449)
..+.+.+...+.++..++.+....+....+...++...++.+.+.......++.+|.||+...+...++..+......+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (546)
T COG0699 4 FEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELLD 83 (546)
T ss_pred chhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHHH
Confidence 34555566667788999999888888888888889999999988888888999999999999998888887777777888
Q ss_pred HHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChh
Q 013120 167 RSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQA 246 (449)
Q Consensus 167 ~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (449)
..++...+++|......+.+..+.......+..++ +.++.+.++.+.+.... .+.++..+.+....
T Consensus 84 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 149 (546)
T COG0699 84 LGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALET 149 (546)
T ss_pred hhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchhH
Confidence 88888899888888878777777777777766655 77888877665432111 56677777777777
Q ss_pred hhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 013120 247 DINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAA 326 (449)
Q Consensus 247 ~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~ 326 (449)
++............+..+|..++.+......++..++...++..+..++....+............ .+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--- 220 (546)
T COG0699 150 DIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN--- 220 (546)
T ss_pred HHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch---
Confidence 777777777788888999999998888777789999999999999999888777554444333221 22211
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhHHHHhhccCccccCCHHHHHHHHHhcCCCCCCCCCChHH
Q 013120 327 DAGGKLYTIMEICRLFDQIYKEHLDGVRPGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQG 406 (449)
Q Consensus 327 ~~~~~~~~l~~~~~~f~~~~~~~i~g~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~p~~~~p~~~ 406 (449)
.++.....|...+....+| .++... ...+.....+...++.....++.+.+|..+....+
T Consensus 221 -------~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (546)
T COG0699 221 -------EVLAVIQTLLKRLSELVRG-----ARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLTL 280 (546)
T ss_pred -------HHHHHHHHHHHHHHHHhcc-----chhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccccc
Confidence 2344445555555533333 233222 11122222234445666667788888877777778
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhh
Q 013120 407 YRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAI 441 (449)
Q Consensus 407 f~~li~~~~~~~~~P~~~~~~~v~~~l~~~v~~~~ 441 (449)
+..++..++..+..++.+|+..+..++.++.....
T Consensus 281 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (546)
T COG0699 281 LDTLVETPIGQFDTQINQLLRKLISELVRILLKEL 315 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998999988888888888887744433
No 277
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.45 E-value=2.9e-07 Score=80.25 Aligned_cols=151 Identities=14% Similarity=0.260 Sum_probs=89.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.|-.|++.|+.|+|||||+|.++..+|.- .|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-----------------------qy-------------------------- 38 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-----------------------QY-------------------------- 38 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-----------------------Hh--------------------------
Confidence 56789999999999999999999887610 00
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC-CcccchH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN-QDLATSD 191 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~-~d~~~~~ 191 (449)
..--+..|-...+.+ . .....|.|+||.|.-+. .++-..|.+.+||.+|+.+-.+ ..+.+-+
T Consensus 39 -kaTIgadFltKev~V--d-~~~vtlQiWDTAGQERF-------------qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 39 -KATIGADFLTKEVQV--D-DRSVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNNPKSFENLE 101 (210)
T ss_pred -ccccchhheeeEEEE--c-CeEEEEEEEecccHHHh-------------hhcccceecCCceEEEEeecCChhhhccHH
Confidence 000112333333333 2 23345899999998775 3444678899999988854222 1222222
Q ss_pred HH--HHHHHhCC---CCCceEEEeccccccCCCCcH---HHHHcCcccccCCCeEEEEeCChhhhh
Q 013120 192 AI--KISREVDP---TGERTFGVLTKIDLMDKGTDA---ADILEGKSYRLKFPWIGVVNRSQADIN 249 (449)
Q Consensus 192 ~~--~l~~~~~~---~~~rti~VltK~D~~~~~~~~---~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (449)
.+ +++.+.+| ..=|.|++-||+|.-...... .+...=-...-..+|+.+++....++.
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD 167 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence 22 25555554 456899999999986532111 011000012234678877766554433
No 278
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.45 E-value=7.2e-07 Score=85.98 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~ 64 (449)
..+++|+|.+|+|||||+|+|+|....+++.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 4579999999999999999999987654443
No 279
>PRK13768 GTPase; Provisional
Probab=98.44 E-value=1.5e-06 Score=82.55 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC--CCeEEEEEecCCCcccchHHHH------HHHHhCCCCCceE
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK--PNCIILAISPANQDLATSDAIK------ISREVDPTGERTF 207 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~--~d~iIl~v~~a~~d~~~~~~~~------l~~~~~~~~~rti 207 (449)
.++.++|+||....... ...... ..+++.. +++++++++... ..+...+. +..+. ..+.+.+
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~-~~~~l~~~~~~~ii~liD~~~--~~~~~d~~~~~~l~~~~~~-~~~~~~i 166 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRK-LVERLSGSSKSVVVFLIDAVL--AKTPSDFVSLLLLALSVQL-RLGLPQI 166 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHH-HHHHHHhcCCeEEEEEechHH--hCCHHHHHHHHHHHHHHHH-HcCCCEE
Confidence 47899999998764321 111122 2233333 788888876532 11222222 12222 3478999
Q ss_pred EEeccccccCCC
Q 013120 208 GVLTKIDLMDKG 219 (449)
Q Consensus 208 ~VltK~D~~~~~ 219 (449)
.|+||+|+....
T Consensus 167 ~v~nK~D~~~~~ 178 (253)
T PRK13768 167 PVLNKADLLSEE 178 (253)
T ss_pred EEEEhHhhcCch
Confidence 999999998764
No 280
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.43 E-value=3.3e-07 Score=94.09 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=43.6
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-----chHHHHHHHHhCCCCCc-eE
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPTGER-TF 207 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-----~~~~~~l~~~~~~~~~r-ti 207 (449)
+...++||||||..+. +.+ +...+..+|++||||++...-+. .....+.+..+...+.+ .|
T Consensus 83 ~~~~i~lIDtPGh~~f------------~~~-~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~ii 149 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDF------------IKN-MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMI 149 (446)
T ss_pred CCeEEEEEECCChHHH------------HHH-HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEE
Confidence 4457999999995542 233 34447799999998875432110 12333344445555655 67
Q ss_pred EEeccccc
Q 013120 208 GVLTKIDL 215 (449)
Q Consensus 208 ~VltK~D~ 215 (449)
+++||+|.
T Consensus 150 v~vNKmD~ 157 (446)
T PTZ00141 150 VCINKMDD 157 (446)
T ss_pred EEEEcccc
Confidence 89999994
No 281
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2e-06 Score=86.72 Aligned_cols=116 Identities=17% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
.+.|.|-++|.--.||+|||.+|-+..+-....|--|...
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI---------------------------------------- 190 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI---------------------------------------- 190 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee----------------------------------------
Confidence 3678999999999999999999998776333333222111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
| -..+.-|....+||.||||--.+ ..|-.+-..-+|.++||| |..|....+
T Consensus 191 ----G----------AF~V~~p~G~~iTFLDTPGHaAF-------------~aMRaRGA~vtDIvVLVV--AadDGVmpQ 241 (683)
T KOG1145|consen 191 ----G----------AFTVTLPSGKSITFLDTPGHAAF-------------SAMRARGANVTDIVVLVV--AADDGVMPQ 241 (683)
T ss_pred ----c----------eEEEecCCCCEEEEecCCcHHHH-------------HHHHhccCccccEEEEEE--EccCCccHh
Confidence 1 12244456678999999997654 233333345578777777 444555666
Q ss_pred HHHHHHHhCCCCCceEEEecccccc
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
.++-.+.....+-++|+.+||+|.-
T Consensus 242 T~EaIkhAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 242 TLEAIKHAKSANVPIVVAINKIDKP 266 (683)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCC
Confidence 6776777777789999999999964
No 282
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.41 E-value=1.3e-06 Score=81.45 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC-CCCcccCc--cccc
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK-DFLPRGSG--IVTR 69 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~-~~lP~~~~--~~Tr 69 (449)
.+-.|+|+|.+++|||+|+|.|+|. +.++.+.+ .||+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~ 45 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTK 45 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCcc
Confidence 4457999999999999999999998 23566655 4554
No 283
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.40 E-value=1.9e-06 Score=83.48 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccc
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~ 63 (449)
-.+++|+|.+|+|||||+|+|+|.....++
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~ 150 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTG 150 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccC
Confidence 358999999999999999999998764444
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.38 E-value=3.9e-06 Score=84.77 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=51.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..++.||||||..... ......+..+. ...+++.++||+++.. -+++...++.+......+-+|+||.|
T Consensus 182 ~~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~e~lLVlda~~----Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPDNIIFVMDGSI----GQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCcEEEEEecccc----ChhHHHHHHHHHhccCCcEEEEECcc
Confidence 3589999999976531 11222222222 1346888888886432 24455566776655567889999999
Q ss_pred ccCCCCcHHHHH
Q 013120 215 LMDKGTDAADIL 226 (449)
Q Consensus 215 ~~~~~~~~~~~l 226 (449)
....+..+..+.
T Consensus 251 ~~argG~aLs~~ 262 (429)
T TIGR01425 251 GHAKGGGALSAV 262 (429)
T ss_pred CCCCccHHhhhH
Confidence 987776555543
No 285
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.33 E-value=2e-06 Score=78.34 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=83.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
..|+|+|..|+|||+|.--+++..|.+.-. |
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~~y~------p------------------------------------------- 34 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFVEDYD------P------------------------------------------- 34 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccccccC------C-------------------------------------------
Confidence 589999999999999999999887632211 1
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
+... ...-.+.+. .....+.|+||+|.... ..|-..|+...|..++|.+-.+. -+-..+..
T Consensus 35 --tied--~y~k~~~v~-~~~~~l~ilDt~g~~~~-------------~~~~~~~~~~~~gF~lVysitd~-~SF~~~~~ 95 (196)
T KOG0395|consen 35 --TIED--SYRKELTVD-GEVCMLEILDTAGQEEF-------------SAMRDLYIRNGDGFLLVYSITDR-SSFEEAKQ 95 (196)
T ss_pred --Cccc--cceEEEEEC-CEEEEEEEEcCCCcccC-------------hHHHHHhhccCcEEEEEEECCCH-HHHHHHHH
Confidence 0000 001111122 23346789999994433 45567899999999888753332 11122222
Q ss_pred HHHHh----CCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhh
Q 013120 195 ISREV----DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADI 248 (449)
Q Consensus 195 l~~~~----~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (449)
+..++ .....|+++|.||+|+........+--+......+.+|+.++......+
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCH
Confidence 32233 3334599999999999863221111001112345556777766554333
No 286
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.32 E-value=6.8e-06 Score=69.51 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHHhCCC----CCceEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVDPT----GERTFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~-l~~~~~~~----~~rti~Vl 210 (449)
..|.|.||.|+-... .++-+.|++-+|+.+||.++++ ..+-+... +-+++|.. ..++++..
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d--~eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMD--PESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCC--HHHHHHHHHHHHHHhhccccccccEEEEe
Confidence 358999999998743 5778999999999999987664 33323333 33455532 34777888
Q ss_pred ccccccCCCC
Q 013120 211 TKIDLMDKGT 220 (449)
Q Consensus 211 tK~D~~~~~~ 220 (449)
||.|+..+.+
T Consensus 126 N~rdr~~p~~ 135 (198)
T KOG3883|consen 126 NKRDRAEPRE 135 (198)
T ss_pred chhhcccchh
Confidence 9999986654
No 287
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.32 E-value=2.7e-06 Score=75.89 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCc
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLP 61 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP 61 (449)
.+.++++|.+|+|||||+|+|.+..+..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 4589999999999999999999987643
No 288
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=6e-06 Score=81.14 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc--------ccchHHHHHHHHhCCCCCc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISREVDPTGER 205 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d--------~~~~~~~~l~~~~~~~~~r 205 (449)
+.+.++|+|+||..++ +.+|+ .-+..||+.||||+..... ..+.+-..|++.+. -..
T Consensus 83 ~k~~~tIiDaPGHrdF------------vknmI-tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRDF------------VKNMI-TGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQ 147 (428)
T ss_pred CCceEEEeeCCchHHH------------HHHhh-cchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--Cce
Confidence 3457999999993321 22322 2246789999998754432 22334444555554 468
Q ss_pred eEEEeccccccC
Q 013120 206 TFGVLTKIDLMD 217 (449)
Q Consensus 206 ti~VltK~D~~~ 217 (449)
.|+++||+|.++
T Consensus 148 lIVavNKMD~v~ 159 (428)
T COG5256 148 LIVAVNKMDLVS 159 (428)
T ss_pred EEEEEEcccccc
Confidence 899999999985
No 289
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.31 E-value=6.4e-07 Score=88.01 Aligned_cols=31 Identities=32% Similarity=0.628 Sum_probs=26.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCccccccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p 71 (449)
++.|||-+|+|||||||+|+|... ..+.++|
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 699999999999999999999986 4455555
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.28 E-value=3.5e-06 Score=85.65 Aligned_cols=118 Identities=20% Similarity=0.283 Sum_probs=76.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+||+||+.|+||||||-+|+...|.| .++-|.|-... .
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~I---------------------------------------P 48 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRILI---------------------------------------P 48 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccc---cccccCCcccc---------------------------------------C
Confidence 89999999999999999999987632 12222220000 0
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEec---CCCcccchHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP---ANQDLATSDA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~---a~~d~~~~~~ 192 (449)
. =..|+..+.++||++--.+. +....+-++++|+|.++..- ...|..+.-+
T Consensus 49 ---a----------dvtPe~vpt~ivD~ss~~~~-------------~~~l~~EirkA~vi~lvyavd~~~T~D~ist~W 102 (625)
T KOG1707|consen 49 ---A----------DVTPENVPTSIVDTSSDSDD-------------RLCLRKEIRKADVICLVYAVDDESTVDRISTKW 102 (625)
T ss_pred ---C----------ccCcCcCceEEEecccccch-------------hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhh
Confidence 0 11234455899999832221 34456778999988766521 2234445566
Q ss_pred HHHHHHhCC--CCCceEEEeccccccCCCCc
Q 013120 193 IKISREVDP--TGERTFGVLTKIDLMDKGTD 221 (449)
Q Consensus 193 ~~l~~~~~~--~~~rti~VltK~D~~~~~~~ 221 (449)
+-+.++.-. ...|+|+|-||.|..+....
T Consensus 103 LPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 103 LPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 667776652 36799999999999876543
No 291
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5e-06 Score=74.33 Aligned_cols=120 Identities=16% Similarity=0.267 Sum_probs=77.6
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
+..+..||++|+.++|||=||..++.-.| .+-++-.+-+.+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~--------------------------------- 52 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFA--------------------------------- 52 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEE---------------------------------
Confidence 34677899999999999999999998777 3322222222110
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
.. .+.|.+ ......|+||.|.-+. +.++..|.+.+...+||.+-....- -.
T Consensus 53 ------------t~--t~~vd~-k~vkaqIWDTAGQERy-------------rAitSaYYrgAvGAllVYDITr~~T-fe 103 (222)
T KOG0087|consen 53 ------------TR--TVNVDG-KTVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITRRQT-FE 103 (222)
T ss_pred ------------ee--ceeecC-cEEEEeeecccchhhh-------------ccccchhhcccceeEEEEechhHHH-HH
Confidence 00 011111 1235789999998875 5678899999999989886443211 11
Q ss_pred HHHHHHHHhCC---CCCceEEEeccccccC
Q 013120 191 DAIKISREVDP---TGERTFGVLTKIDLMD 217 (449)
Q Consensus 191 ~~~~l~~~~~~---~~~rti~VltK~D~~~ 217 (449)
-..++++++.. ...++++|-||+|+..
T Consensus 104 nv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 104 NVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 22334444443 3568889999999975
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.6e-06 Score=90.95 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+-.|.++|+--+|||||.++|+-.. |...+ +-+++ .|..+.|+.+..+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~-----------------~g~~~~D~~e~Eq------- 57 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH-----------------DGAATMDWMEQEQ------- 57 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc-----------------CCCccCCCcHHHH-------
Confidence 55679999999999999999998432 22211 11110 1122333333221
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.++-++....+.+...+ ...++||||||-.+...+ +.+.++-.|..++||++ ..+. ..+.
T Consensus 58 ---eRGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt~E-------------V~rslrvlDgavvVvda-veGV-~~QT 117 (697)
T COG0480 58 ---ERGITITSAATTLFWKG--DYRINLIDTPGHVDFTIE-------------VERSLRVLDGAVVVVDA-VEGV-EPQT 117 (697)
T ss_pred ---hcCCEEeeeeeEEEEcC--ceEEEEeCCCCccccHHH-------------HHHHHHhhcceEEEEEC-CCCe-eecH
Confidence 23344555555554443 457999999999987543 77778888988888763 3333 4455
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+.++.+..+.|.++++||+|.+..
T Consensus 118 Etv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 118 ETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHHhhcCCCeEEEEECcccccc
Confidence 55788888889999999999998854
No 293
>PRK12288 GTPase RsgA; Reviewed
Probab=98.27 E-value=2.2e-06 Score=84.93 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLP 61 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP 61 (449)
.++++|.+|+|||||||+|+|...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~ 232 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEIL 232 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccccee
Confidence 48999999999999999999976543
No 294
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=1.7e-06 Score=85.73 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~ 63 (449)
.++|+|.+|+|||||||+|+|...+.++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 4899999999999999999987654433
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.26 E-value=4.3e-06 Score=79.04 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFL 60 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~l 60 (449)
..++++|.+|+|||||||+|+|...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~ 146 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQ 146 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhc
Confidence 37999999999999999999997543
No 296
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=6.2e-06 Score=80.47 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=64.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.++.+||-||+|||||+|||+....-+...-.||--|-+=...- .| .-+. ....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v-------------------~d-~rl~-----~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYV-------------------PD-CRLD-----ELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEec-------------------Cc-hHHH-----HHHHh
Confidence 47999999999999999999987754444455776662221100 00 0000 00011
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
.+. ++..+ ...+.|||.+|+...+++|.. .-+-..+-|+++|+|+.||...
T Consensus 58 ~~c----~~k~~--------~~~ve~vDIAGLV~GAs~GeG------LGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 58 VKC----PPKIR--------PAPVEFVDIAGLVKGASKGEG------LGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCC----CCcEE--------eeeeEEEEecccCCCcccCCC------cchHHHHhhhhcCeEEEEEEec
Confidence 110 01111 125899999999998877532 1333566688999999998643
No 297
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=8.9e-06 Score=74.03 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=47.5
Q ss_pred CcEEEeCCCCCcCCcCCCC-CchHHHHHHHHHHHhc--------------CCCeEEEEEecCCCcccchHHHHHHHHhCC
Q 013120 137 NLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISREVDP 201 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~-~~~~~~~~~~~~~yi~--------------~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~ 201 (449)
+|++|||||+.+.-..+.- +-+..-+++.-..|++ ..+|+++++.|....+.--+ ..+++.+..
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplD-ieflkrLt~ 183 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLD-IEFLKRLTE 183 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCccc-HHHHHHHhh
Confidence 6999999999875433210 1133334443344433 34688888777666544333 334444433
Q ss_pred CCCceEEEeccccccCC
Q 013120 202 TGERTFGVLTKIDLMDK 218 (449)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (449)
--+++-|+-|.|.+.-
T Consensus 184 -vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 184 -VVNVVPVIAKADTLTL 199 (336)
T ss_pred -hheeeeeEeecccccH
Confidence 4678889999998743
No 298
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=1.3e-05 Score=79.41 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.++.||||||-.... ...+.++ ..++ ..++.++||+++.. ..++....++.+.. -.-.=+|+||.
T Consensus 321 ~DvVLIDTaGRs~kd--------~~lm~EL-~~~lk~~~PdevlLVLsATt---k~~d~~~i~~~F~~-~~idglI~TKL 387 (436)
T PRK11889 321 VDYILIDTAGKNYRA--------SETVEEM-IETMGQVEPDYICLTLSASM---KSKDMIEIITNFKD-IHIDGIVFTKF 387 (436)
T ss_pred CCEEEEeCccccCcC--------HHHHHHH-HHHHhhcCCCeEEEEECCcc---ChHHHHHHHHHhcC-CCCCEEEEEcc
Confidence 479999999986632 2223333 2332 34677777765432 23455667777776 34556789999
Q ss_pred cccCCCCcHHHHHc
Q 013120 214 DLMDKGTDAADILE 227 (449)
Q Consensus 214 D~~~~~~~~~~~l~ 227 (449)
|.......+..+..
T Consensus 388 DET~k~G~iLni~~ 401 (436)
T PRK11889 388 DETASSGELLKIPA 401 (436)
T ss_pred cCCCCccHHHHHHH
Confidence 99988776666654
No 299
>PRK13796 GTPase YqeH; Provisional
Probab=98.20 E-value=1.6e-06 Score=86.80 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++|||.+|+|||||||+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 68999999999999999999753
No 300
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.19 E-value=1.9e-06 Score=72.35 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..|-..+++|++++|||||+-.+....| -.+..+++-.-..++.
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkirT----------------------------------- 49 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIRT----------------------------------- 49 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEEE-----------------------------------
Confidence 4566788999999999999998886544 2222222222222221
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
+.|.+ +...|.|+||.|-... +.++..|.+.++.+|+|.+-.|....+ .
T Consensus 50 ----------------v~i~G-~~VkLqIwDtAGqErF-------------rtitstyyrgthgv~vVYDVTn~ESF~-N 98 (198)
T KOG0079|consen 50 ----------------VDING-DRVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGESFN-N 98 (198)
T ss_pred ----------------eecCC-cEEEEEEeecccHHHH-------------HHHHHHHccCCceEEEEEECcchhhhH-h
Confidence 11221 2346899999986553 788999999999999988755532221 1
Q ss_pred HHHHHHHhCCC--CCceEEEeccccccCCC
Q 013120 192 AIKISREVDPT--GERTFGVLTKIDLMDKG 219 (449)
Q Consensus 192 ~~~l~~~~~~~--~~rti~VltK~D~~~~~ 219 (449)
.-+++.++... .-+-++|-||.|..+..
T Consensus 99 v~rWLeei~~ncdsv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 99 VKRWLEEIRNNCDSVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHHHhcCccccceecccCCCCccce
Confidence 22344444432 45778999999987543
No 301
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.18 E-value=1.7e-06 Score=86.56 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999864
No 302
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.17 E-value=8e-06 Score=80.76 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=62.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC-CcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDF-LPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~-lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-.+.+||-+|+|||||+|+|++... -+.....||..|..=.+.- ++. . ++.+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v-~d~-------------r---~d~L~~-------- 57 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNP-SDP-------------R---LDLLAI-------- 57 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEe-chh-------------H---HHHHHH--------
Confidence 3689999999999999999999874 2233345666663322111 100 0 001110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
.... +. .....+.++|.||+......+.. ..+-..+.++++|+|+.||...
T Consensus 58 ~~~~-~~------------~~~a~i~~~DiaGlv~gAs~g~G------lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 58 YIKP-EK------------VPPTTTEFVDIAGLVGGASKGEG------LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred HhCC-cC------------cCCceEEEEeccccccchhcccC------cchHHHHHHHhCCEEEEEEeCC
Confidence 0000 00 00124789999999987655321 1334667789999999988743
No 303
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.17 E-value=1.7e-06 Score=75.64 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCc
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLP 61 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP 61 (449)
..++++|..|+|||||+|+|++...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~ 62 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK 62 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh
Confidence 589999999999999999999975433
No 304
>PTZ00099 rab6; Provisional
Probab=98.16 E-value=3.8e-06 Score=75.32 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch-HHHHHHHHhCCCCCceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~~-~~~~l~~~~~~~~~rti~VltK 212 (449)
...+.|+||||..+. ..+...|++.+|++|+|++..+.+ +... .++..+........++++|.||
T Consensus 28 ~v~l~iwDt~G~e~~-------------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQERF-------------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHHh-------------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 357899999998764 456778999999999998755422 1111 2222222222235678999999
Q ss_pred ccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHh
Q 013120 213 IDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRRERE 263 (449)
Q Consensus 213 ~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ 263 (449)
+|+..... ...+... .....+..|+.+++..+.+++..+..+.....+.+
T Consensus 95 ~DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99864221 1111111 11223345778888888888777776666555543
No 305
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=8.9e-06 Score=82.17 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=80.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+-.++||-+--.|||||...|+..- | |.-+. ...+.+.|--++ ++
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~~-------------------~~q~q~LDkl~v--------ER 104 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELT------G--TIDNN-------------------IGQEQVLDKLQV--------ER 104 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHh------C--CCCCC-------------------Cchhhhhhhhhh--------hh
Confidence 4468999999999999999998542 1 11110 001111111111 12
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
..| .++....-.+........-|.||||||-.++..+ +.+-+.-++.+||+|+ |++....|...
T Consensus 105 ERG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvVD-A~qGvqAQT~a 168 (650)
T KOG0462|consen 105 ERG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVVD-ASQGVQAQTVA 168 (650)
T ss_pred hcC--cEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEEE-cCcCchHHHHH
Confidence 223 3333333333333322345899999999988755 5566777898989887 55566555544
Q ss_pred HHHHHhCCCCCceEEEeccccccCC
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+...+ ..+...|.|+||+|+-..
T Consensus 169 nf~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 169 NFYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHH-HcCCeEEEeeeccCCCCC
Confidence 444333 348899999999998643
No 306
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.13 E-value=1.2e-05 Score=74.91 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=71.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+|+++|..+|||||..+.+.+.- .|.... .+|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCce-----------------------------------------
Confidence 58999999999999999999863 344432 1121111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---- 189 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---- 189 (449)
.-.+.......+.+||.||....-... ....-....++..++|+|++..+.++..
T Consensus 39 -------------~~~v~~~~~~~l~iwD~pGq~~~~~~~--------~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 -------------KSHVRFLSFLPLNIWDCPGQDDFMENY--------FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp -------------EEEEECTTSCEEEEEEE-SSCSTTHTT--------HTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred -------------EEEEecCCCcEEEEEEcCCcccccccc--------ccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 111333345579999999987643220 0011234468899999999866455332
Q ss_pred -hHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 190 -SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 190 -~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
...++.+.+..| +.+..+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 233445666777 78899999999998643
No 307
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.12 E-value=4e-06 Score=76.41 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.||||||....... ....++++. ..+ .++-++||+++.. . ++.+..+..........=+|+||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d~~-----~~~el~~~~-~~~-~~~~~~LVlsa~~-~---~~~~~~~~~~~~~~~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEE-----LLEELKKLL-EAL-NPDEVHLVLSATM-G---QEDLEQALAFYEAFGIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHH-----HHHHHHHHH-HHH-SSSEEEEEEEGGG-G---GHHHHHHHHHHHHSSTCEEEEESTTS
T ss_pred CCEEEEecCCcchhhHH-----HHHHHHHHh-hhc-CCccceEEEeccc-C---hHHHHHHHHHhhcccCceEEEEeecC
Confidence 57999999998864211 222222222 122 5677777775443 2 22222222222212234577999999
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
......+.+++.
T Consensus 153 t~~~G~~l~~~~ 164 (196)
T PF00448_consen 153 TARLGALLSLAY 164 (196)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCCcccceeHHH
Confidence 877666666544
No 308
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=9.8e-06 Score=72.66 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=48.5
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc---CCCeEEEEEecCCCcccchHHHHHHHHh------CCCCCceE
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE---KPNCIILAISPANQDLATSDAIKISREV------DPTGERTF 207 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~---~~d~iIl~v~~a~~d~~~~~~~~l~~~~------~~~~~rti 207 (449)
.++|||.||-.+. +.-...|++ .+-+|++||+++.....-.++-+++-.+ ...+.+.+
T Consensus 83 ~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 4799999998873 344556666 6889999999887544444444433222 24467899
Q ss_pred EEeccccccCCCC
Q 013120 208 GVLTKIDLMDKGT 220 (449)
Q Consensus 208 ~VltK~D~~~~~~ 220 (449)
+..||-|+....+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999875443
No 309
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.3e-05 Score=67.76 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=80.8
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
|.-|-.++|+|+.++|||-||..++...|= -++..
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfk-DdssH-------------------------------------------- 40 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFK-DDSSH-------------------------------------------- 40 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhc-ccccc--------------------------------------------
Confidence 446789999999999999999999976651 11000
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT- 189 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~- 189 (449)
.-+..|....|.+. -....|.|+||.|..+. +.++++|.+.+-..+||.+..+.|-.+
T Consensus 41 -----TiGveFgSrIinVG---gK~vKLQIWDTAGQErF-------------RSVtRsYYRGAAGAlLVYD~Tsrdsfna 99 (214)
T KOG0086|consen 41 -----TIGVEFGSRIVNVG---GKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRDSFNA 99 (214)
T ss_pred -----eeeeeecceeeeec---CcEEEEEEeecccHHHH-------------HHHHHHHhccccceEEEEeccchhhHHH
Confidence 00122333333331 13346899999987764 889999999988888888766655433
Q ss_pred -hHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 190 -SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 190 -~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..++.=++.+.+...-++++-||-|+-..
T Consensus 100 LtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 100 LTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 23344456666656666777799998643
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=6.4e-05 Score=74.37 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=79.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHHH
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEI 107 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i 107 (449)
..|+++|.+|+||||++..|... +...+ . .+.+...++. +..|+.....+-....+..++.+.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~~g------~--~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al 277 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLKQN------R--TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcC------C--eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH
Confidence 45889999999999999999853 22221 0 1112222221 1222222222211223445554443
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCC
Q 013120 108 QDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQ 185 (449)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~ 185 (449)
...... ...++.||||||..... ...+.++ ..+. -.++.++||++ ++.
T Consensus 278 ~~l~~~--------------------~~~D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~~~~LVLs-ag~ 327 (407)
T PRK12726 278 QYMTYV--------------------NCVDHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPDLTCFTFS-SGM 327 (407)
T ss_pred HHHHhc--------------------CCCCEEEEECCCCCccC--------HHHHHHH-HHHhhccCCceEEEECC-Ccc
Confidence 321100 12479999999987632 2233332 2232 25666666554 332
Q ss_pred cccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHc
Q 013120 186 DLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (449)
Q Consensus 186 d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (449)
...+....++.+.. -...-+|+||.|.......+..+..
T Consensus 328 --~~~d~~~i~~~f~~-l~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 328 --KSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred --cHHHHHHHHHhcCc-CCCCEEEEEcccCCCCccHHHHHHH
Confidence 23455556665554 3345577999999887776666543
No 311
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.09 E-value=4.2e-06 Score=76.61 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
-+|+++|-||+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 389999999999999999999754
No 312
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.08 E-value=6.5e-06 Score=77.40 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=16.3
Q ss_pred EECCCCCCHHHHHHHhhC
Q 013120 39 VVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 39 VvG~~saGKSSllnaL~G 56 (449)
|+|..||||||+..++..
T Consensus 1 ViGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp -EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 789999999999999986
No 313
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=8.8e-06 Score=87.27 Aligned_cols=163 Identities=19% Similarity=0.254 Sum_probs=84.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHHHH
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEIQ 108 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (449)
.|++||.+|+||||.+..|.+... +.... -.+-+...+.. ...|++....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 588999999999999999998632 11100 01111111111 12233333322222334444444332
Q ss_pred HHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc
Q 013120 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (449)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~ 188 (449)
. . ...++.||||||....... +.+....+.. ...++-++||+++...
T Consensus 260 ~----~-------------------~~~D~VLIDTAGRs~~d~~-----l~eel~~l~~--~~~p~e~~LVLsAt~~--- 306 (767)
T PRK14723 260 A----L-------------------GDKHLVLIDTVGMSQRDRN-----VSEQIAMLCG--VGRPVRRLLLLNAASH--- 306 (767)
T ss_pred H----h-------------------cCCCEEEEeCCCCCccCHH-----HHHHHHHHhc--cCCCCeEEEEECCCCc---
Confidence 1 1 1237999999998763211 2222222111 2346666677754431
Q ss_pred chHHHHHHHHhCCCC--CceEEEeccccccCCCCcHHHHHcCcccccCCCeEEE
Q 013120 189 TSDAIKISREVDPTG--ERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 189 ~~~~~~l~~~~~~~~--~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
..+..++++.+.... ..+=+|+||.|.......+.+++.. ..+...|++.
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~--~~lPI~yit~ 358 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIR--HRLPVHYVST 358 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHH--HCCCeEEEec
Confidence 223334555555321 3556789999999887777776543 2333344443
No 314
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.07 E-value=6.4e-05 Score=71.79 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSY-IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~y-i~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.++.||||||-.... ...++++..-. ..+++-++||+++... .++....++.+.. -...=+|+||.|
T Consensus 155 ~D~ViIDt~Gr~~~~--------~~~l~el~~~~~~~~~~~~~LVl~a~~~---~~d~~~~~~~f~~-~~~~~~I~TKlD 222 (270)
T PRK06731 155 VDYILIDTAGKNYRA--------SETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD-IHIDGIVFTKFD 222 (270)
T ss_pred CCEEEEECCCCCcCC--------HHHHHHHHHHHhhhCCCeEEEEEcCccC---HHHHHHHHHHhCC-CCCCEEEEEeec
Confidence 579999999987532 22233332111 2356767777654321 3466677787776 345567899999
Q ss_pred ccCCCCcHHHHHc
Q 013120 215 LMDKGTDAADILE 227 (449)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (449)
.......+..+..
T Consensus 223 et~~~G~~l~~~~ 235 (270)
T PRK06731 223 ETASSGELLKIPA 235 (270)
T ss_pred CCCCccHHHHHHH
Confidence 9988776666544
No 315
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.06 E-value=2.4e-05 Score=68.52 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
..+++++|.+++||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35789999999999999999998654
No 316
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.03 E-value=1e-05 Score=80.25 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=50.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..+.+|||||--++..+ +.+-++-.|.++|+|++....+ .+....++..-..|.+-|+|+||+|.
T Consensus 68 ~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA~EGpM--PQTrFVlkKAl~~gL~PIVVvNKiDr 132 (603)
T COG1217 68 TRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDASEGPM--PQTRFVLKKALALGLKPIVVINKIDR 132 (603)
T ss_pred eEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEcccCCC--CchhhhHHHHHHcCCCcEEEEeCCCC
Confidence 56899999999887644 6677778899999988654332 33333555555668899999999998
Q ss_pred cCCC
Q 013120 216 MDKG 219 (449)
Q Consensus 216 ~~~~ 219 (449)
-+..
T Consensus 133 p~Ar 136 (603)
T COG1217 133 PDAR 136 (603)
T ss_pred CCCC
Confidence 7543
No 317
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.02 E-value=2e-05 Score=75.46 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=65.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-+.|.+||-+|+||||++|+|+....-|..--.||--|-+-+.--. ..+| +.
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~--------------d~Rf--------------d~ 71 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVP--------------DSRF--------------DL 71 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecC--------------chHH--------------HH
Confidence 3489999999999999999999877544444456665533321100 0000 00
Q ss_pred hhCCCCCcccccEEEEEecCCC---CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEec
Q 013120 114 ETGRTKQISSVPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 182 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~---~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~ 182 (449)
.. .+++|.. ..|+++|..|+.+.++.|+. .-+-..+-|+++|+|+-||..
T Consensus 72 l~-------------~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G------LGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 72 LC-------------PIYGPKSKVPAFLTVYDIAGLVKGASAGEG------LGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred HH-------------HhcCCcceeeeeEEEEeecccccCcccCcC------chHHHHHhhhhccceeEEEEe
Confidence 00 1222221 24899999999998877643 234466778999999888764
No 318
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.00 E-value=2.2e-05 Score=69.05 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
|.++++|..++|||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999975
No 319
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.00 E-value=4.7e-05 Score=63.64 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=77.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
-+|..+|--||||+|+|.-|.+.+. +.- |
T Consensus 18 irilllGldnAGKTT~LKqL~sED~--~hl---t---------------------------------------------- 46 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDP--RHL---T---------------------------------------------- 46 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCCh--hhc---c----------------------------------------------
Confidence 4899999999999999999999873 221 1
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+.+|+... +.......|+++|.-|-..- +....+|..+.|.+|+|++++.......-...
T Consensus 47 --pT~GFn~k~----v~~~g~f~LnvwDiGGqr~I-------------RpyWsNYyenvd~lIyVIDS~D~krfeE~~~e 107 (185)
T KOG0074|consen 47 --PTNGFNTKK----VEYDGTFHLNVWDIGGQRGI-------------RPYWSNYYENVDGLIYVIDSTDEKRFEEISEE 107 (185)
T ss_pred --ccCCcceEE----EeecCcEEEEEEecCCcccc-------------chhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence 122333322 33344567999999887653 66788999999999999986554333333333
Q ss_pred HHHHhCCC---CCceEEEeccccccC
Q 013120 195 ISREVDPT---GERTFGVLTKIDLMD 217 (449)
Q Consensus 195 l~~~~~~~---~~rti~VltK~D~~~ 217 (449)
++..++.. .-++.+-.||-|++.
T Consensus 108 l~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 108 LVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred HHHHhhhhhhhccceeehhhhhHHHh
Confidence 44444433 456777779999764
No 320
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.00 E-value=6.1e-05 Score=65.50 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..++.||||||+... ...++..+|.+|++++|.- -++..+.+- .....-=++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~----------------~~~~~~~Ad~~ivv~tpe~-----~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS----------------EVDIASMADTTVVVMAPGA-----GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh----------------hhhHHHhCCEEEEEECCCc-----hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 468999999997642 3358889998888887762 233323222 222334478999998
No 321
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.99 E-value=1.2e-05 Score=69.78 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=46.3
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-hHHHHHHHHhCC--CCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDP--TGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~-~~~~~l~~~~~~--~~~rti~VltK~ 213 (449)
.+.+|||.|.... ..+++.|.+.+.+.+||++ ..|... ...+.+-+.+.. ...|+++|-||+
T Consensus 70 r~mlWdtagqeEf-------------DaItkAyyrgaqa~vLVFS--TTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAGQEEF-------------DAITKAYYRGAQASVLVFS--TTDRYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhccchhH-------------HHHHHHHhccccceEEEEe--cccHHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 3568999886653 6778999999999888874 233332 223333333332 368999999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 998653
No 322
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=2.7e-05 Score=64.78 Aligned_cols=121 Identities=17% Similarity=0.272 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-+..-+++|+-++|||.||.-++...|+ ..||..+-.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfm-------adcphtigv------------------------------------ 46 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-------ADCPHTIGV------------------------------------ 46 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHh-------hcCCcccce------------------------------------
Confidence 4457789999999999999999988773 345532221
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--ch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~ 190 (449)
.|... .+++++. ...|.++||.|..+. +.++++|.+.+-..++|.+-....-- .+
T Consensus 47 -------efgtr--iievsgq-kiklqiwdtagqerf-------------ravtrsyyrgaagalmvyditrrstynhls 103 (215)
T KOG0097|consen 47 -------EFGTR--IIEVSGQ-KIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS 103 (215)
T ss_pred -------eccee--EEEecCc-EEEEEEeecccHHHH-------------HHHHHHHhccccceeEEEEehhhhhhhhHH
Confidence 11111 1223332 246899999987653 78899999988777666653322111 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.++.=++.+..-..-++++-||.|+-+..
T Consensus 104 swl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 104 SWLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred HHHhhhhccCCCceEEEEecchhhhhhcc
Confidence 33333444443345566778999987543
No 323
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=9.4e-06 Score=80.74 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
-.++++|.+|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999975
No 324
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=75.46 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6888999999999999999984
No 325
>PRK00098 GTPase RsgA; Reviewed
Probab=97.96 E-value=4.2e-05 Score=74.53 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
.++++|.+|+|||||+|+|+|...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 699999999999999999999754
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.8e-05 Score=79.99 Aligned_cols=133 Identities=17% Similarity=0.291 Sum_probs=82.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.-.++++|.-.+|||+|+.-|.+... |... .+++..++-++.. + .++
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~l-----------------~----------~E~ 174 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDTL-----------------F----------YEQ 174 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-cccc-----ccccccccccccc-----------------h----------hhH
Confidence 34689999999999999999998763 4332 2222111111110 0 001
Q ss_pred hhCCCCCcccccEEEEEecCCC--CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNV--VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~--~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
.++.++-..++.+-+..... .-++++||||-..... + +...++-+|.++++++.+..-..+
T Consensus 175 --eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~D------------E-~ta~l~~sDgvVlvvDv~EGVmln-- 237 (971)
T KOG0468|consen 175 --ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSD------------E-TTASLRLSDGVVLVVDVAEGVMLN-- 237 (971)
T ss_pred --hcCceEeecceEEEEecCcCceeeeeeecCCCcccchH------------H-HHHHhhhcceEEEEEEcccCceee--
Confidence 12233444555554444333 2389999999887642 2 445677899999998866532222
Q ss_pred HHHHHHHhCCCCCceEEEecccccc
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
.-++++..-....++.+|+||+|.+
T Consensus 238 tEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 238 TERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHHHHHHhccCcEEEEEehhHHH
Confidence 3345666666788999999999975
No 327
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=6.8e-06 Score=83.70 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-----chHHHHHHHHhCCCC-Cce
Q 013120 133 PNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPTG-ERT 206 (449)
Q Consensus 133 ~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-----~~~~~~l~~~~~~~~-~rt 206 (449)
+....++|+|.||..++. -+ +..-+..+|+.||||+.....+. ..+..+.+..+...| ...
T Consensus 252 s~~~~~tliDaPGhkdFi------------~n-mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~ql 318 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFI------------PN-MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQL 318 (603)
T ss_pred cCceeEEEecCCCccccc------------hh-hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceE
Confidence 566789999999955442 22 22335578999999875443222 122333333333333 578
Q ss_pred EEEeccccccCCCCcHHHHHcCc---------cc-ccCCCeEEEEeCChhhh
Q 013120 207 FGVLTKIDLMDKGTDAADILEGK---------SY-RLKFPWIGVVNRSQADI 248 (449)
Q Consensus 207 i~VltK~D~~~~~~~~~~~l~~~---------~~-~l~~g~~~v~~~s~~~~ 248 (449)
|+++||+|+++=..+-.+.+.+. .+ .....|++++..+++++
T Consensus 319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 88999999995443322222211 11 22347787777776654
No 328
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.93 E-value=6.8e-06 Score=82.53 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=27.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCccccccc
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p 71 (449)
.-.|.+||-+|+||||+||+|+|.+. --||+.|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 45799999999999999999999886 3455555
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=97.93 E-value=8.3e-05 Score=73.23 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=51.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.||||||....... ....++.+.+ .-++|.++||+++.. -+++...++.+...-.-.-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~~~-----lm~eL~~i~~--~~~pd~~iLVl~a~~----g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDAN-----LMDELKKIVR--VTKPDLVIFVGDALA----GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcHH-----HHHHHHHHHH--hhCCceEEEeecccc----chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 46999999998864211 3333333321 236888888775432 245565666655444457789999999
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
...+..+..+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 887766666543
No 330
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=9.9e-05 Score=74.65 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.+|||+|...... ...+.+..+. -...+.-.+||+++... ..+..+.+..+... .-.=+|+||.|.
T Consensus 270 ~d~VLIDTaGrsqrd~-----~~~~~l~~l~--~~~~~~~~~LVl~at~~---~~~~~~~~~~f~~~-~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ-----MLAEQIAMLS--QCGTQVKHLLLLNATSS---GDTLDEVISAYQGH-GIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCCcchH-----HHHHHHHHHh--ccCCCceEEEEEcCCCC---HHHHHHHHHHhcCC-CCCEEEEEeeeC
Confidence 4789999999886421 1222222211 12234456666654322 33444556666553 345578999999
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
......+.+++.
T Consensus 339 t~~~G~~l~~~~ 350 (420)
T PRK14721 339 AASLGIALDAVI 350 (420)
T ss_pred CCCccHHHHHHH
Confidence 887766666654
No 331
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=4.2e-05 Score=76.19 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=97.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
++....++-+--.|||||-..|+... +..+. .+.++.+-+.++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~-------------------------------Rem~~Q~LDsMd 50 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSE-------------------------------REMRAQVLDSMD 50 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcCh-------------------------------HHHHHHhhhhhh
Confidence 34457788888999999999998643 22211 222222222233
Q ss_pred hhhCCCCCcccccEEEEEecCC--CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
-...++-++-...+.+.+...+ ...+.||||||-.+++.+ +.+.+..+...+|+|+ |.+....+
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvVD-AsQGveAQ 116 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVVD-ASQGVEAQ 116 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEEE-CccchHHH
Confidence 2223344455566666666543 345999999999988754 4445556666778876 44556555
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCCc-HHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.....-..++ .+.-+|-|+||+|+-....+ ..+-++...-.-...-+.++..++.++++.++.+
T Consensus 117 TlAN~YlAle-~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~I 181 (603)
T COG0481 117 TLANVYLALE-NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAI 181 (603)
T ss_pred HHHHHHHHHH-cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHH
Confidence 4333333333 36789999999999654322 1111211100111234556777776666544433
No 332
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=7.9e-05 Score=62.26 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCC---CCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPT---GERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~---~~rti~VltK 212 (449)
..+.++|+-|..+ ++.+.+.|......+|+|++++..|-......++-+.+... ....++..||
T Consensus 61 ~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 61 VKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred eEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecC
Confidence 3477899988776 37889999999999999999886543333223343433322 3456667899
Q ss_pred ccccCCCC--cHHHHHcCcccccCCCeEE
Q 013120 213 IDLMDKGT--DAADILEGKSYRLKFPWIG 239 (449)
Q Consensus 213 ~D~~~~~~--~~~~~l~~~~~~l~~g~~~ 239 (449)
-|+.+.-. ++.+.++-+. .-...|+.
T Consensus 128 QDlp~A~~pqei~d~leLe~-~r~~~W~v 155 (180)
T KOG0071|consen 128 QDLPDAMKPQEIQDKLELER-IRDRNWYV 155 (180)
T ss_pred cccccccCHHHHHHHhcccc-ccCCccEe
Confidence 99876433 3455555433 22345653
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.90 E-value=3.9e-05 Score=75.18 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHH---HHh-cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR---SYI-EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~---~yi-~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~Vl 210 (449)
..++.||||||....... ..+.+..+.+ ..+ ..++-.+||+++.. .++++.-++.....-...-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~~-----l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~----g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTN-----LMEELKKIKRVIKKADPDAPHEVLLVLDATT----GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCHH-----HHHHHHHHHHHHhhhcCCCCceEEEEEECCC----ChHHHHHHHHHHhhCCCCEEEE
Confidence 358999999998764321 2333333221 111 24677777776543 2333434455443345667899
Q ss_pred ccccccCCCCcHHHHHc
Q 013120 211 TKIDLMDKGTDAADILE 227 (449)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (449)
||.|....+..+.++..
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998877766666553
No 334
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=5.1e-06 Score=70.59 Aligned_cols=98 Identities=11% Similarity=0.199 Sum_probs=60.3
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC-cccchHHHHHHHHhCC----CCCceEEEec
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISREVDP----TGERTFGVLT 211 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~-d~~~~~~~~l~~~~~~----~~~rti~Vlt 211 (449)
.|.|+||.|..+. ++++..|.+++=..+|+++-.+. .+.+ ...++.++.. ...-++++-|
T Consensus 68 hLQlWDTAGQERF-------------RSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGN 132 (219)
T KOG0081|consen 68 HLQLWDTAGQERF-------------RSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGN 132 (219)
T ss_pred EEeeeccccHHHH-------------HHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcC
Confidence 5899999987664 88899999999888888764432 1111 1112222322 2456778899
Q ss_pred cccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhh
Q 013120 212 KIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (449)
|+|+.+....-.+.........+++|+..++..+.+++
T Consensus 133 K~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~ 170 (219)
T KOG0081|consen 133 KADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVE 170 (219)
T ss_pred ccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHH
Confidence 99998653221121122234677889988776655443
No 335
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.87 E-value=9.2e-05 Score=82.45 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.|.++||||||.... ..+...+...+|++++|++.. ..+ ..+....+..+...+.++++|+||+|
T Consensus 525 ~p~i~fiDTPGhe~F-------------~~lr~~g~~~aDivlLVVDa~-~Gi-~~qT~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEAF-------------TSLRKRGGSLADLAVLVVDIN-EGF-KPQTIEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEECc-ccC-CHhHHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999995442 344455678899999988643 322 23334444444455789999999999
Q ss_pred ccC
Q 013120 215 LMD 217 (449)
Q Consensus 215 ~~~ 217 (449)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 874
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.87 E-value=4.7e-05 Score=73.79 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCc
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLP 61 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP 61 (449)
..++++|..|+|||||+|+|+|.....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc
Confidence 479999999999999999999976533
No 337
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=1.8e-05 Score=68.49 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c--hHHHHHHHHhCCCCCceEEEec
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T--SDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~--~~~~~l~~~~~~~~~rti~Vlt 211 (449)
...+.+||+-|--. .+++...|...+++||+++++.+.+.. . +.-..+...-.-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 34689999988655 288999999999999999987763222 1 1112233333445899999999
Q ss_pred cccccCCCC--cHHHHHc-Cc-ccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 212 KIDLMDKGT--DAADILE-GK-SYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 212 K~D~~~~~~--~~~~~l~-~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
|-|+-+.-+ ++..++. .. ...-...+.+|+...+++++.++.+...
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence 999865432 1222222 11 1222345666776666766666555443
No 338
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.86 E-value=8.6e-05 Score=69.34 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..+++||-|-|+.+.. + .-..-+|++++++.|...|-..-.-.-++... =|+|+||.|
T Consensus 121 G~D~IiiETVGvGQsE--------------~--~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------Di~vVNKaD 178 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSE--------------V--DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------DIFVVNKAD 178 (266)
T ss_dssp T-SEEEEEEESSSTHH--------------H--HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred CCCEEEEeCCCCCccH--------------H--HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------cEEEEeCCC
Confidence 3689999999999832 1 22456899999998876553321111122222 379999999
Q ss_pred cc
Q 013120 215 LM 216 (449)
Q Consensus 215 ~~ 216 (449)
..
T Consensus 179 ~~ 180 (266)
T PF03308_consen 179 RP 180 (266)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 339
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.84 E-value=0.00016 Score=73.81 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.||||||....... ....+..+... ...+.-++||+. ++.. ..+..++++.+...+. .-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d~~-----~~~~L~~ll~~-~~~~~~~~LVl~-a~~~--~~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDKR-----LIEELKALIEF-SGEPIDVYLVLS-ATTK--YEDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCHH-----HHHHHHHHHhc-cCCCCeEEEEEE-CCCC--HHHHHHHHHHhCCCCC-CEEEEecccc
Confidence 58999999998653211 22223333331 123445555554 4432 3344455666665443 4578999999
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
......+.+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877665666554
No 340
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=5.1e-05 Score=78.09 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
-..|+++|..|+||||++..|.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999874
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.79 E-value=0.0015 Score=62.13 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G 56 (449)
+-+.|.+.|.+++|||||+++|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 345899999999999999999974
No 342
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.0001 Score=72.88 Aligned_cols=137 Identities=15% Similarity=0.247 Sum_probs=85.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
...++|-+|-||||||-|.|+=. |-.-+.+-.+.-+.... ....|+-++.+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlf-------GgaIq~AG~Vk~rk~~~-------------~a~SDWM~iEk--------- 63 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLF-------GGAIQEAGTVKGRKSGK-------------HAKSDWMEIEK--------- 63 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHh-------cchhhhcceeeeccCCc-------------ccccHHHHHHH---------
Confidence 36899999999999999998721 11112221111111000 00112222111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
..+.+++..+....+ ...-+.|.||||--+.+.. +.+-+..+|+.++|+++|. .+ ..+.++
T Consensus 64 -qRGISVtsSVMqF~Y---~~~~iNLLDTPGHeDFSED-------------TYRtLtAvDsAvMVIDaAK-Gi-E~qT~K 124 (528)
T COG4108 64 -QRGISVTSSVMQFDY---ADCLVNLLDTPGHEDFSED-------------TYRTLTAVDSAVMVIDAAK-GI-EPQTLK 124 (528)
T ss_pred -hcCceEEeeEEEecc---CCeEEeccCCCCccccchh-------------HHHHHHhhheeeEEEeccc-Cc-cHHHHH
Confidence 223334444433322 2345889999999887633 6677888999989888765 33 467788
Q ss_pred HHHHhCCCCCceEEEeccccccCCC
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
|..-..-.+.|++-.+||+|.-...
T Consensus 125 LfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 125 LFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred HHHHHhhcCCceEEEeeccccccCC
Confidence 9888888999999999999986443
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.78 E-value=5.9e-05 Score=67.29 Aligned_cols=78 Identities=18% Similarity=0.346 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.++||||...... .....+..+. ....++.+++|+.+.. ..+..+.+..+.....-.-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~~~-----~~l~~l~~l~--~~~~~~~~~lVv~~~~----~~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQIDE-----NLMEELKKIK--RVVKPDEVLLVVDAMT----GQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhhH-----HHHHHHHHHH--hhcCCCeEEEEEECCC----ChHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 5789999999875311 1222222221 1235888888887532 233444455443222256788999999
Q ss_pred cCCCCcHHH
Q 013120 216 MDKGTDAAD 224 (449)
Q Consensus 216 ~~~~~~~~~ 224 (449)
..+.....+
T Consensus 152 ~~~~g~~~~ 160 (173)
T cd03115 152 DARGGAALS 160 (173)
T ss_pred CCCcchhhh
Confidence 877665544
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.77 E-value=0.00021 Score=68.65 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=48.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc-----CCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE-----KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGV 209 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~-----~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~V 209 (449)
..++.||||||...... ...+.+..+. +.+. .+|-++||+++.. ..+++..+..+...-...-+|
T Consensus 154 ~~D~ViIDT~G~~~~d~-----~~~~el~~~~-~~~~~~~~~~~~~~~LVl~a~~----~~~~~~~~~~f~~~~~~~g~I 223 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKV-----NLMDELKKIK-RVIKKVDKDAPDEVLLVLDATT----GQNALEQAKVFNEAVGLTGII 223 (272)
T ss_pred CCCEEEEeCCCCCcchH-----HHHHHHHHHH-HHHhcccCCCCceEEEEEECCC----CHHHHHHHHHHHhhCCCCEEE
Confidence 35899999999876321 1222333322 1222 3787888876542 233444444443323456789
Q ss_pred eccccccCCCCcHHHHHc
Q 013120 210 LTKIDLMDKGTDAADILE 227 (449)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (449)
+||+|.......+.++..
T Consensus 224 lTKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAY 241 (272)
T ss_pred EEccCCCCCccHHHHHHH
Confidence 999999887766666544
No 345
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.75 E-value=0.0007 Score=69.09 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=51.0
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHH-HHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVR-SYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~-~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
++.||||||..... ...++++.. ..+..+|.++||+++.. .+++...++.+...-..+-+|+||.|.
T Consensus 177 DvVIIDTAGr~~~d--------~~lm~El~~l~~~~~pdevlLVvda~~----gq~av~~a~~F~~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 177 DVIIVDTAGRHALE--------EDLIEEMKEIKEAVKPDEVLLVIDATI----GQQAKNQAKAFHEAVGIGGIIITKLDG 244 (437)
T ss_pred CEEEEECCCcccch--------HHHHHHHHHHHHHhcccceeEEEeccc----cHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 78999999987642 122222221 22446888888877543 256667777766544456678999999
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
...+..+..+..
T Consensus 245 ~a~~G~~ls~~~ 256 (437)
T PRK00771 245 TAKGGGALSAVA 256 (437)
T ss_pred CCcccHHHHHHH
Confidence 877766666543
No 346
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00019 Score=72.04 Aligned_cols=152 Identities=18% Similarity=0.316 Sum_probs=76.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCC-------CccceeeccCCCcccCChHHHHHHH
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEG-------SREYAEFLHIPRKRFTDFAAVRKEI 107 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i 107 (449)
..|+++|.+|+||||.+-.|...-.+-. .+....+.+...+.. ...|++....+-....++.++...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 3688999999999999998885321100 001111222222221 1122332222222222344443332
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc---CCCeEEEEEecCC
Q 013120 108 QDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE---KPNCIILAISPAN 184 (449)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~---~~d~iIl~v~~a~ 184 (449)
.. . ...++.||||||..... . ..+.++ ..++. ...-++||++ ++
T Consensus 250 ~~----~-------------------~~~DlVLIDTaGr~~~~-------~-~~l~el-~~~l~~~~~~~e~~LVls-at 296 (388)
T PRK12723 250 TQ----S-------------------KDFDLVLVDTIGKSPKD-------F-MKLAEM-KELLNACGRDAEFHLAVS-ST 296 (388)
T ss_pred HH----h-------------------CCCCEEEEcCCCCCccC-------H-HHHHHH-HHHHHhcCCCCeEEEEEc-CC
Confidence 21 1 12579999999987521 1 123332 23332 2224556665 44
Q ss_pred CcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHc
Q 013120 185 QDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILE 227 (449)
Q Consensus 185 ~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (449)
.. ..+..+....+... ...=+|+||.|.......+..++.
T Consensus 297 ~~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 297 TK--TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred CC--HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 33 23333455555432 345578999999888776666654
No 347
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.74 E-value=0.00024 Score=66.22 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-+-|+|+|--||||+|++..|.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 4568999999999999999999874
No 348
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00029 Score=70.84 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHH--HHhc--CCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR--SYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~--~yi~--~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~Vl 210 (449)
..++.||||||..... ...+.++.. ..+. .+.-.+||+++.. . ..+....++.+.. -...=+|+
T Consensus 299 ~~D~VLIDTaGr~~rd--------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~--~~~~~~~~~~f~~-~~~~glIl 366 (432)
T PRK12724 299 GSELILIDTAGYSHRN--------LEQLERMQSFYSCFGEKDSVENLLVLSSTS-S--YHHTLTVLKAYES-LNYRRILL 366 (432)
T ss_pred CCCEEEEeCCCCCccC--------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-C--HHHHHHHHHHhcC-CCCCEEEE
Confidence 3578999999987532 123333211 1121 2334567665443 2 3344555565544 34456789
Q ss_pred ccccccCCCCcHHHHHc
Q 013120 211 TKIDLMDKGTDAADILE 227 (449)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (449)
||.|.......+..+..
T Consensus 367 TKLDEt~~~G~il~i~~ 383 (432)
T PRK12724 367 TKLDEADFLGSFLELAD 383 (432)
T ss_pred EcccCCCCccHHHHHHH
Confidence 99999887776666543
No 349
>PRK10867 signal recognition particle protein; Provisional
Probab=97.70 E-value=0.0002 Score=72.80 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=50.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..++.||||||...... .....+..+. . .-.++-++||+++.. .+++...++.+...-..+-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~d~-----~lm~eL~~i~-~-~v~p~evllVlda~~----gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDE-----ELMDELKAIK-A-AVNPDEILLVVDAMT----GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccCH-----HHHHHHHHHH-H-hhCCCeEEEEEeccc----HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 35799999999865321 1222222221 2 236777778876432 36677777777654455678899999
Q ss_pred ccCCCCcHHHHH
Q 013120 215 LMDKGTDAADIL 226 (449)
Q Consensus 215 ~~~~~~~~~~~l 226 (449)
....+..+..+.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 876665555543
No 350
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.68 E-value=6.2e-05 Score=71.49 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.-+.+.|+|-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 34689999999999999999997644
No 351
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.67 E-value=0.00022 Score=81.86 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCccc
Q 013120 4 LISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (449)
Q Consensus 4 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~ 63 (449)
+..+-.++.++...+......+ ..-...||=.+|+|.++|||||+|+.- |..| |-.
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~~--~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLGG--RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHhhccccC--chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 4457778888888887543222 122348999999999999999999998 7764 554
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.67 E-value=0.00027 Score=65.08 Aligned_cols=25 Identities=20% Similarity=0.508 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 353
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00026 Score=73.92 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
.+.|-++|+|+--+||+-||..|-|..+--...|..| ..-|..+.....++.......
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit----------------------qqIgAt~fp~~ni~e~tk~~~ 530 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT----------------------QQIGATYFPAENIREKTKELK 530 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhcccccccccccee----------------------eeccccccchHHHHHHHHHHH
Confidence 4679999999999999999999998765322222222 222344444555544332211
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
...+. .-..|.+.+|||||--++ .++-.+.-..+|.+||||+-.. .+.. +
T Consensus 531 ----~~~K~-----------~~kvPg~lvIdtpghEsF-------------tnlRsrgsslC~~aIlvvdImh-Glep-q 580 (1064)
T KOG1144|consen 531 ----KDAKK-----------RLKVPGLLVIDTPGHESF-------------TNLRSRGSSLCDLAILVVDIMH-GLEP-Q 580 (1064)
T ss_pred ----hhhhh-----------hcCCCeeEEecCCCchhh-------------hhhhhccccccceEEEEeehhc-cCCc-c
Confidence 11110 114577999999996654 3444455678999999987443 3322 2
Q ss_pred HHHHHHHhCCCCCceEEEecccccc
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
.+.-+..++....+.|+.|||+|.+
T Consensus 581 tiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 581 TIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhHHHHHHHhcCCCeEEeehhhhhh
Confidence 3333444555678999999999986
No 354
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.60 E-value=0.00041 Score=63.43 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.++||||||++++++.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999975
No 355
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00046 Score=58.04 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHHhCCCCCceEEEec
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~~~~l~~~~~~~~~rti~Vlt 211 (449)
.....++|+-|-.+- +-..+.|..+.+++|+||++++.|--. .+-..++++-.-.+...+++.|
T Consensus 61 NLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~an 127 (182)
T KOG0072|consen 61 NLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFAN 127 (182)
T ss_pred cccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEec
Confidence 346889999988773 667899999999999999988765332 2333344444444677888999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|.|....
T Consensus 128 KqD~~~~ 134 (182)
T KOG0072|consen 128 KQDYSGA 134 (182)
T ss_pred cccchhh
Confidence 9998644
No 356
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00021 Score=61.60 Aligned_cols=118 Identities=14% Similarity=0.262 Sum_probs=76.9
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 31 ~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
+..-..+++.|--||||+||++.|-.... +.-.+|-.||.=
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTSE------------------------------------ 57 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSE------------------------------------ 57 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCChH------------------------------------
Confidence 34567899999999999999999976543 223455555210
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
.+.+ .....+-+|+-|-... +...++|+..+|+|++.|+.+..+....
T Consensus 58 --------------~l~I-----g~m~ftt~DLGGH~qA-------------rr~wkdyf~~v~~iv~lvda~d~er~~e 105 (193)
T KOG0077|consen 58 --------------ELSI-----GGMTFTTFDLGGHLQA-------------RRVWKDYFPQVDAIVYLVDAYDQERFAE 105 (193)
T ss_pred --------------Hhee-----cCceEEEEccccHHHH-------------HHHHHHHHhhhceeEeeeehhhHHHhHH
Confidence 0111 1235788999887653 7789999999999999998765433221
Q ss_pred HH--HH-HHHHhCCCCCceEEEeccccccCCC
Q 013120 191 DA--IK-ISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 191 ~~--~~-l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.. ++ ++....-..-+.++..||+|.-..-
T Consensus 106 s~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 106 SKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 11 11 1111112367899999999987543
No 357
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.56 E-value=0.00073 Score=68.75 Aligned_cols=81 Identities=20% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.||||||...... .....+..+. ..-+++-++||+++.. .+++...++.+...-.-+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~d~-----~l~~eL~~i~--~~~~p~e~lLVvda~t----gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDE-----ELMEELAAIK--EILNPDEILLVVDAMT----GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccCH-----HHHHHHHHHH--HhhCCceEEEEEeccc----hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 5799999999865321 1222332322 2346788888887532 467777777776444456678999997
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
...+..+..+..
T Consensus 252 ~~~~G~~lsi~~ 263 (428)
T TIGR00959 252 DARGGAALSVRS 263 (428)
T ss_pred cccccHHHHHHH
Confidence 766655555443
No 358
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.00029 Score=65.72 Aligned_cols=133 Identities=22% Similarity=0.373 Sum_probs=79.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|..||..+-|||||++.|.+..| +..+++..--.+.|..
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~------------------------------------- 83 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQA------------------------------------- 83 (406)
T ss_pred EEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeec-------------------------------------
Confidence 599999999999999999999876 1223332211111110
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCC-CchHHHHHHHHHHHhc---------------CCCeEEEE
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYIE---------------KPNCIILA 179 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~-~~~~~~~~~~~~~yi~---------------~~d~iIl~ 179 (449)
.+...-..-+. ..|++|||-|+.+--.++.. +-+.+-+......|++ ..++.+++
T Consensus 84 -~TyelqEsnvr--------lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYF 154 (406)
T KOG3859|consen 84 -NTYELQESNVR--------LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYF 154 (406)
T ss_pred -chhhhhhcCee--------EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEE
Confidence 00000011112 25899999999875544322 2244444444444433 34577788
Q ss_pred EecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 180 ISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 180 v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
+.|....+..-+ +-..+.+|. ..++|-|+-|.|.+...
T Consensus 155 I~PTGH~LKslD-Lvtmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 155 ISPTGHSLKSLD-LVTMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred ecCCCcchhHHH-HHHHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 888877654333 335566765 57888899999987654
No 359
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00028 Score=70.10 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=62.8
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCC-ceEEEeccccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGE-RTFGVLTKIDL 215 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~-rti~VltK~D~ 215 (449)
.++|||.||.-+. +.+|+ .-+.-.|+.+|||.+ +..+ ..+..+.+..++-.|. +.++|+||+|.
T Consensus 51 ~~~fIDvpgh~~~------------i~~mi-ag~~~~d~alLvV~~-deGl-~~qtgEhL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHPDF------------ISNLL-AGLGGIDYALLVVAA-DEGL-MAQTGEHLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcHHH------------HHHHH-hhhcCCceEEEEEeC-ccCc-chhhHHHHHHHHhcCCCceEEEEecccc
Confidence 5999999998763 23333 335567888888753 3222 3333444455555554 55999999999
Q ss_pred cCCCC---cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 013120 216 MDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (449)
Q Consensus 216 ~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (449)
.++.. ...+++.... .-...++.++..++++++.+...+....
T Consensus 116 ~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 116 VDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 97642 1223333322 2224456677777777776655554444
No 360
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.53 E-value=0.00095 Score=66.31 Aligned_cols=161 Identities=16% Similarity=0.276 Sum_probs=92.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCC---C----CccceeeccCCCcccCChHHHHHHH
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE---G----SREYAEFLHIPRKRFTDFAAVRKEI 107 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~i 107 (449)
..|++||++|+||||-|--|..+.++--+ ..-+ -+...+. + -+.|++++..+-....+..++..++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----~~kV--aiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKK-----KKKV--AIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhcc-----Ccce--EEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 35899999999999999999876431000 0000 1111111 0 1456666666666666777766665
Q ss_pred HHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCC-CeEEEEEecCCCc
Q 013120 108 QDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP-NCIILAISPANQD 186 (449)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~-d~iIl~v~~a~~d 186 (449)
.... ..++.||||-|-.... ...+.+ ...|+... +.-.+.|.+++..
T Consensus 277 ~~l~-----------------------~~d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 277 EALR-----------------------DCDVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred HHhh-----------------------cCCEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCcc
Confidence 4322 2379999999987642 233333 34454433 3333444455532
Q ss_pred ccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEE
Q 013120 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIG 239 (449)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 239 (449)
..+.......+...+... +++||.|....-.+...++.. ..+...|+.
T Consensus 325 --~~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~e--~~~PV~YvT 372 (407)
T COG1419 325 --YEDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMYE--TRLPVSYVT 372 (407)
T ss_pred --hHHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHHH--hCCCeEEEe
Confidence 344445666666655554 578999988765566666543 233344443
No 361
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.52 E-value=0.00014 Score=61.88 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhC---CCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD---PTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~---~~~~rti~VltK 212 (449)
.+|.||||.|..+.. .+---|.+.+|..+||.+-...|. -+..-.+++++. ....-.++|-||
T Consensus 62 a~L~IWDTAGQErfH-------------ALGPIYYRgSnGalLVyDITDrdS-FqKVKnWV~Elr~mlGnei~l~IVGNK 127 (218)
T KOG0088|consen 62 ADLHIWDTAGQERFH-------------ALGPIYYRGSNGALLVYDITDRDS-FQKVKNWVLELRTMLGNEIELLIVGNK 127 (218)
T ss_pred eeeeeeeccchHhhh-------------ccCceEEeCCCceEEEEeccchHH-HHHHHHHHHHHHHHhCCeeEEEEecCc
Confidence 579999999987753 334468899999999886443322 122223444443 334567889999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+-.
T Consensus 128 iDLEe 132 (218)
T KOG0088|consen 128 IDLEE 132 (218)
T ss_pred ccHHH
Confidence 99864
No 362
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.0017 Score=64.76 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHH-HHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR-SYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~-~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++.||||.|-... ..+.+.++.. .-.-+||-++||+++.. =+++...|+.++..-.=|=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEcc
Confidence 358999999997764 2233344332 22568898989987654 5788889999998777788899999
Q ss_pred cccCCCCcHHHH
Q 013120 214 DLMDKGTDAADI 225 (449)
Q Consensus 214 D~~~~~~~~~~~ 225 (449)
|--.++.-++.+
T Consensus 250 DGdaRGGaALS~ 261 (451)
T COG0541 250 DGDARGGAALSA 261 (451)
T ss_pred cCCCcchHHHhh
Confidence 988777655443
No 363
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.36 E-value=0.00029 Score=69.02 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=27.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
-++.|||-+|+|||||||+|......|+|..
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 4899999999999999999999887777654
No 364
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00044 Score=66.99 Aligned_cols=144 Identities=26% Similarity=0.394 Sum_probs=77.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc----cccccEEEEEEecCCCCccceeecc-CCCcccCChHHHHHHHHHH
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI----VTRRPLVLQLHKLEEGSREYAEFLH-IPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~----~Tr~p~~i~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ 110 (449)
+++|+|.--+|||||+--|+.-. |--|.|- .=|.|.+++.-++.. ...+.+. .......+..+.+.
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSs---is~evlGFd~~g~vVNY~~~~t----- 239 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSS---ISNEVLGFDNRGKVVNYAQNMT----- 239 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccc---cchhcccccccccccchhhccc-----
Confidence 79999999999999999888654 3444442 224555544322111 0011111 11111222221110
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC--ccc
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLA 188 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~--d~~ 188 (449)
.+.+ ......-+||||+.|-.+.-.. .+.. ...| .||+.+|+|. |+. .+.
T Consensus 240 aEEi----------------~e~SSKlvTfiDLAGh~kY~~T--------Ti~g-LtgY--~Ph~A~LvVs-A~~Gi~~t 291 (591)
T KOG1143|consen 240 AEEI----------------VEKSSKLVTFIDLAGHAKYQKT--------TIHG-LTGY--TPHFACLVVS-ADRGITWT 291 (591)
T ss_pred HHHH----------------HhhhcceEEEeecccchhhhee--------eeee-cccC--CCceEEEEEE-cCCCCccc
Confidence 0011 1111123799999997764211 1111 1122 4677777765 443 455
Q ss_pred chHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 189 TSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 189 ~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
+.+-+-++..+ ..|.++++||+|+.++.
T Consensus 292 TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 292 TREHLGLIAAL---NIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred cHHHHHHHHHh---CCCeEEEEEeeccccch
Confidence 66666666665 57999999999999874
No 365
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0012 Score=67.05 Aligned_cols=69 Identities=17% Similarity=0.396 Sum_probs=43.1
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCC-CceEEEecc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLTK 212 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~-~rti~VltK 212 (449)
....+||...| .+ + .. .....+-+|.++|.++ +|-.+.. +.+.++..+.+.| .|++||+|+
T Consensus 111 K~RRiTflEcp--~D---------l----~~-miDvaKIaDLVlLlId-gnfGfEM-ETmEFLnil~~HGmPrvlgV~Th 172 (1077)
T COG5192 111 KTRRITFLECP--SD---------L----HQ-MIDVAKIADLVLLLID-GNFGFEM-ETMEFLNILISHGMPRVLGVVTH 172 (1077)
T ss_pred ceeEEEEEeCh--HH---------H----HH-HHhHHHhhheeEEEec-cccCcee-hHHHHHHHHhhcCCCceEEEEee
Confidence 34568998888 22 1 11 1233345888877765 5555543 3444555555665 578999999
Q ss_pred ccccCCCC
Q 013120 213 IDLMDKGT 220 (449)
Q Consensus 213 ~D~~~~~~ 220 (449)
.|+....+
T Consensus 173 lDlfk~~s 180 (1077)
T COG5192 173 LDLFKNPS 180 (1077)
T ss_pred cccccChH
Confidence 99986543
No 366
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00088 Score=63.15 Aligned_cols=130 Identities=18% Similarity=0.341 Sum_probs=73.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.|..+|....||+||--||++.- .-.+ .....+++++.+.-+ ++..
T Consensus 14 NigtiGHvdHGKTTLtaAit~~l-a~~~------------------------------~~~~~~y~~id~aPe---Ek~r 59 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVL-AKKG------------------------------GAEAKAYDQIDNAPE---EKAR 59 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHH-Hhhc------------------------------cccccchhhhccCch---Hhhc
Confidence 68999999999999999999741 0011 111222233222111 1111
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-chHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAIK 194 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~~~~~~ 194 (449)
| ..++.. .+++.. ...++..||.||--+. +++|+.... +.|..||||.++...+. +.+-.-
T Consensus 60 G--ITInta--hveyet-~~rhyahVDcPGHaDY------------vKNMItgAa-qmDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 60 G--ITINTA--HVEYET-ANRHYAHVDCPGHADY------------VKNMITGAA-QMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred C--ceeccc--eeEEec-CCceEEeccCCChHHH------------HHHHhhhHH-hcCccEEEEEcCCCCCCcchhhhh
Confidence 2 223333 333333 2356899999997653 245544433 45767788865543322 233334
Q ss_pred HHHHhCCCCCceEEEeccccccCCC
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
+++++. -.++++++||+|+++..
T Consensus 122 larqvG--vp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQVG--VPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhcC--CcEEEEEEecccccCcH
Confidence 566653 24677789999999743
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.00095 Score=68.71 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.+|||+|....... ..+... +... ...+.-.+|+++... . .....+.++.+... ..+-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d~~-----~~e~~~-~l~~-~~~p~e~~LVLdAt~-~--~~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRM-----VSEQIA-MLHG-AGAPVKRLLLLNATS-H--GDTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhHH-----HHHHHH-HHhc-cCCCCeeEEEEeCCC-c--HHHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 36899999998753210 111111 1111 111333556665432 2 23444466666653 356678999999
Q ss_pred cCCCCcHHHHHcCcccccCCCeEEE
Q 013120 216 MDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
......+.+++.. ..+.+-|++.
T Consensus 404 t~~~G~~l~i~~~--~~lPI~yvt~ 426 (484)
T PRK06995 404 AASLGGALDVVIR--YKLPLHYVSN 426 (484)
T ss_pred cccchHHHHHHHH--HCCCeEEEec
Confidence 8877767666543 3334445544
No 368
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.0026 Score=58.43 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=54.5
Q ss_pred CCcEEEeC-CCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-HHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDL-PGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-IKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDt-PGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~-~~l~~~~~~~~~rti~VltK~ 213 (449)
.++.+||| .|+- ++-+.-++..|.+|.|++|....+.+... -+|+.++. -+|+.+|+||+
T Consensus 134 ~e~VivDtEAGiE----------------HfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv 195 (255)
T COG3640 134 YEVVIVDTEAGIE----------------HFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKV 195 (255)
T ss_pred CcEEEEecccchh----------------hhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeec
Confidence 35778887 4443 34455577899999999887655554432 22444443 28999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCCh
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ 245 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (449)
|.. + ..+......+++.+.++.+.+.
T Consensus 196 ~e~--e----~~~~~~~~~~~~~vlg~iP~d~ 221 (255)
T COG3640 196 DEE--E----ELLRELAEELGLEVLGVIPYDP 221 (255)
T ss_pred cch--h----HHHHhhhhccCCeEEEEccCCH
Confidence 965 1 1222233456666777777664
No 369
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.15 E-value=0.00034 Score=64.70 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
-++.++|-+|+||||++.-|+|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~ 83 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF 83 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC
Confidence 378899999999999999999975
No 370
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.00037 Score=67.97 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=51.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..+++||||.|-..- ..++-+...+ +.+++ +||.||+|+++.- -+.+...++.+...-.-+-++|||.|
T Consensus 183 ~fdvIIvDTSGRh~q-----e~sLfeEM~~-v~~ai-~Pd~vi~VmDasi----GQaae~Qa~aFk~~vdvg~vIlTKlD 251 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQ-----EASLFEEMKQ-VSKAI-KPDEIIFVMDASI----GQAAEAQARAFKETVDVGAVILTKLD 251 (483)
T ss_pred CCcEEEEeCCCchhh-----hHHHHHHHHH-HHhhc-CCCeEEEEEeccc----cHhHHHHHHHHHHhhccceEEEEecc
Confidence 468999999998763 2223333322 23333 5898989887543 24555566666665566678999999
Q ss_pred ccCCCCcHHHH
Q 013120 215 LMDKGTDAADI 225 (449)
Q Consensus 215 ~~~~~~~~~~~ 225 (449)
-..++.-+...
T Consensus 252 GhakGGgAlSa 262 (483)
T KOG0780|consen 252 GHAKGGGALSA 262 (483)
T ss_pred cCCCCCceeee
Confidence 98777644443
No 371
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.10 E-value=0.0006 Score=61.40 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=67.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
.++|||+-.+||++||-..+-.. ||... .||+.
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVF----------------------------------------- 38 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVF----------------------------------------- 38 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEE-----------------------------------------
Confidence 68999999999999999988654 35443 33222
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc--chHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSDA 192 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~--~~~~ 192 (449)
......+.+......+|.|+||.|-.+... ++.+ .+.++|.+++|..-.+.. +. ...+
T Consensus 39 ------dnys~~v~V~dg~~v~L~LwDTAGqedYDr----------lRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW 99 (198)
T KOG0393|consen 39 ------DNYSANVTVDDGKPVELGLWDTAGQEDYDR----------LRPL---SYPQTDVFLLCFSVVSPESFENVKSKW 99 (198)
T ss_pred ------ccceEEEEecCCCEEEEeeeecCCCccccc----------cccc---CCCCCCEEEEEEEcCChhhHHHHHhhh
Confidence 011112222211223589999999877421 2322 356789887776433211 11 1112
Q ss_pred HHHHHHhCCCCCceEEEeccccccC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
+--.+..-| +.|+|+|.||.|+.+
T Consensus 100 ~pEi~~~cp-~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 100 IPEIKHHCP-NVPIILVGTKADLRD 123 (198)
T ss_pred hHHHHhhCC-CCCEEEEeehHHhhh
Confidence 222233333 689999999999984
No 372
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0015 Score=62.38 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=40.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC---CCeEEEEEecCCCcccchHHHHHHHHhCCC-CCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLATSDAIKISREVDPT-GERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~---~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~-~~rti~Vlt 211 (449)
..++|||.||-.- +....+.. -|..+|++ +||......+..+.+-.++-- -+.+|+|-|
T Consensus 86 R~VSfVDaPGHe~----------------LMATMLsGAAlMDgAlLvI-aANEpcPQPQT~EHl~AleIigik~iiIvQN 148 (415)
T COG5257 86 RRVSFVDAPGHET----------------LMATMLSGAALMDGALLVI-AANEPCPQPQTREHLMALEIIGIKNIIIVQN 148 (415)
T ss_pred EEEEEeeCCchHH----------------HHHHHhcchhhhcceEEEE-ecCCCCCCCchHHHHHHHhhhccceEEEEec
Confidence 3589999999542 11112222 36666665 466655554444433333333 467888999
Q ss_pred cccccCCCC
Q 013120 212 KIDLMDKGT 220 (449)
Q Consensus 212 K~D~~~~~~ 220 (449)
|+|++.++.
T Consensus 149 KIDlV~~E~ 157 (415)
T COG5257 149 KIDLVSRER 157 (415)
T ss_pred ccceecHHH
Confidence 999997653
No 373
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.88 E-value=0.002 Score=65.53 Aligned_cols=30 Identities=43% Similarity=0.613 Sum_probs=26.5
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHhhCCCC
Q 013120 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 30 ~~~~lP~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
+..+.-.|+|+|+||+|||||||.|.|..|
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 334667899999999999999999999887
No 374
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.84 E-value=0.00034 Score=57.88 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=61.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~-~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..|.++||.|..+. ++++-.|.+++|+++|+.+-+|.. +.+ +.++.-..++........++-||+
T Consensus 47 vklqiwdtagqerf-------------rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAGQERF-------------RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccchHHH-------------hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 35899999997764 788999999999999998877642 222 223333344444456678889999
Q ss_pred cccCCC----CcHHHHHcCcccccCCCeEEEEeCChhhh
Q 013120 214 DLMDKG----TDAADILEGKSYRLKFPWIGVVNRSQADI 248 (449)
Q Consensus 214 D~~~~~----~~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (449)
|+.... ++-.++. ...+++|...+...+-++
T Consensus 114 d~a~er~v~~ddg~kla----~~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 114 DLAHERAVKRDDGEKLA----EAYGIPFMETSAKTGFNV 148 (192)
T ss_pred ccchhhccccchHHHHH----HHHCCCceeccccccccH
Confidence 996532 1222221 234566777666665443
No 375
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0047 Score=59.88 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=82.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC-CcccCcccccccEEEEEEecCCCCccceeecc------CCCcccCChHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDF-LPRGSGIVTRRPLVLQLHKLEEGSREYAEFLH------IPRKRFTDFAAVRK 105 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~-lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 105 (449)
.+-+++-+|+---||||||-.|+--.- ++.+. . ..++ ...-...||.-+.+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQ---------------------l-a~l~~dS~~~~t~g~~~D~ALLvD 62 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQ---------------------L-ASLERDSKRKGTQGEKIDLALLVD 62 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHH---------------------H-HHHhcccccccCCCCccchhhhhh
Confidence 567999999999999999999986321 01110 0 0011 11123346777776
Q ss_pred HHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC
Q 013120 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ 185 (449)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~ 185 (449)
-++++.+ .|-+ -+ +-..+++-.....++.||||-.... ++|+-- ..-+|+.|++|++ ..
T Consensus 63 GL~AERE--QGIT----ID-VAYRyFsT~KRkFIiADTPGHeQYT------------RNMaTG-ASTadlAIlLVDA-R~ 121 (431)
T COG2895 63 GLEAERE--QGIT----ID-VAYRYFSTEKRKFIIADTPGHEQYT------------RNMATG-ASTADLAILLVDA-RK 121 (431)
T ss_pred hhHHHHh--cCce----EE-EEeeecccccceEEEecCCcHHHHh------------hhhhcc-cccccEEEEEEec-ch
Confidence 6665443 2422 11 1223455566789999999976542 444422 3457888888864 44
Q ss_pred cccchHHHHHHHHhCCCCCce-EEEeccccccCCCCc
Q 013120 186 DLATSDAIKISREVDPTGERT-FGVLTKIDLMDKGTD 221 (449)
Q Consensus 186 d~~~~~~~~l~~~~~~~~~rt-i~VltK~D~~~~~~~ 221 (449)
....+. .+..--..-.|.|. ++.+||+|+++-.++
T Consensus 122 Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 122 GVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred hhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence 433322 22111122236655 456999999986654
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=96.82 E-value=0.0023 Score=63.98 Aligned_cols=24 Identities=25% Similarity=0.703 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
.++++|.+|+|||||+|+|+|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 377
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.006 Score=58.80 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=50.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC---CCeEEEEEecCCCcccchHHHH--HHHHhCCCCCceEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDLATSDAIK--ISREVDPTGERTFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~---~d~iIl~v~~a~~d~~~~~~~~--l~~~~~~~~~rti~Vl 210 (449)
.+++|||-||--+ +++..|.. -|..|++++ ......++.+.- +...+ ..+.++|+
T Consensus 70 lq~tlvDCPGHas----------------LIRtiiggaqiiDlm~lviD-v~kG~QtQtAEcLiig~~~---c~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGHAS----------------LIRTIIGGAQIIDLMILVID-VQKGKQTQTAECLIIGELL---CKKLVVVI 129 (522)
T ss_pred ceeEEEeCCCcHH----------------HHHHHHhhhheeeeeeEEEe-hhcccccccchhhhhhhhh---ccceEEEE
Confidence 3579999999654 23344443 466667665 444444544433 22322 46788999
Q ss_pred ccccccCCCCcH----------HHHHcCcccccCCCeEEEEeCCh
Q 013120 211 TKIDLMDKGTDA----------ADILEGKSYRLKFPWIGVVNRSQ 245 (449)
Q Consensus 211 tK~D~~~~~~~~----------~~~l~~~~~~l~~g~~~v~~~s~ 245 (449)
||+|...++... .+-+++....-..+.+.|....+
T Consensus 130 nkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 130 NKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred eccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence 999998764321 12223323333455666666554
No 378
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.65 E-value=0.0035 Score=54.71 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEE
Q 013120 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVV 241 (449)
Q Consensus 162 ~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 241 (449)
++++.+.+++++|.+|++++.... . ......+.+.+...+.+.++|+||+|+.+.. ...+... ........++.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~-~-~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~-~~~~~~~~~~~iS 77 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDP-E-LTRSRKLERYVLELGKKLLIVLNKADLVPKE-VLEKWKS-IKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCC-c-ccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH-HHHHHHH-HHHhCCCcEEEEE
Confidence 467888899999999988875332 2 2222334444444578999999999986432 1111100 0011223456667
Q ss_pred eCChhhhhccCCHH
Q 013120 242 NRSQADINKNVDMI 255 (449)
Q Consensus 242 ~~s~~~~~~~~~~~ 255 (449)
+.++.+++.+...+
T Consensus 78 a~~~~gi~~L~~~l 91 (156)
T cd01859 78 AKERLGTKILRRTI 91 (156)
T ss_pred ccccccHHHHHHHH
Confidence 66666655544433
No 379
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0067 Score=64.05 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..-.|.++-+--.||+||..+|+-..- -+-.|.+-.+++- |+.+- +.+.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfl---------------------d~red-----eq~r 56 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFL---------------------DTRED-----EQTR 56 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeec---------------------cccch-----hhhh
Confidence 455789999999999999999986441 1233333333321 11000 0001
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.++-+...+|. + ....-+.|||+||-.+.+.. +.+...-+|..++.|+ +... ..++.
T Consensus 57 gitmkss~is~------~--~~~~~~nlidspghvdf~se-------------vssas~l~d~alvlvd-vveg-v~~qt 113 (887)
T KOG0467|consen 57 GITMKSSAISL------L--HKDYLINLIDSPGHVDFSSE-------------VSSASRLSDGALVLVD-VVEG-VCSQT 113 (887)
T ss_pred ceeeecccccc------c--cCceEEEEecCCCccchhhh-------------hhhhhhhcCCcEEEEe-eccc-cchhH
Confidence 11111112220 0 12234889999999987543 5556666776655554 4433 35667
Q ss_pred HHHHHHhCCCCCceEEEecccccc
Q 013120 193 IKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
..++|+.=-.+.+.++|+||+|.+
T Consensus 114 ~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 114 YAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred HHHHHHHHHccCceEEEEehhhhH
Confidence 778887766789999999999943
No 380
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.42 E-value=0.043 Score=53.43 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=29.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEE
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLH 77 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~ 77 (449)
..|+++|||+.++|||||...|+...+ --.|+|+-+.|-
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LD 140 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELD 140 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcC
Confidence 589999999999999999999986421 114666666553
No 381
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.41 E-value=0.0027 Score=62.18 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
.|.+||-+|+||||+||+|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 688999999999999999987764
No 382
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.40 E-value=0.012 Score=57.91 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.+|..+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 383
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.33 E-value=0.0091 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.407 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.+.|+|.-||||||.-++|..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eEEEEccCCCCcchHHHHHHH
Confidence 367899999999999999974
No 384
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.25 E-value=0.022 Score=60.28 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|+.|||||||++.|+|..
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 385
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.21 E-value=0.0043 Score=67.76 Aligned_cols=20 Identities=50% Similarity=0.861 Sum_probs=18.8
Q ss_pred ECCCCCCHHHHHHHhhCCCC
Q 013120 40 VGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 40 vG~~saGKSSllnaL~G~~~ 59 (449)
+|.||+|||||||.|.|..|
T Consensus 1 ~g~qssgkstlln~lf~t~f 20 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF 20 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc
Confidence 59999999999999999986
No 386
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.14 Score=49.67 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
+.-.|.|+|.||+|||+|++-|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 45579999999999999999999864
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.13 E-value=0.0028 Score=59.93 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEE
Q 013120 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVV 241 (449)
Q Consensus 162 ~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 241 (449)
...+++.|+.++|.+++|++..+.+.......++...+...+.+.++|+||+|+.+......+..+.. ...+..++.++
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~S 104 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTS 104 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEe
Confidence 35667789999999988886554333322333333344445789999999999975432111111111 12344567777
Q ss_pred eCChhhhhccC
Q 013120 242 NRSQADINKNV 252 (449)
Q Consensus 242 ~~s~~~~~~~~ 252 (449)
+.++.+++.+.
T Consensus 105 Aktg~gi~eLf 115 (245)
T TIGR00157 105 SKNQDGLKELI 115 (245)
T ss_pred cCCchhHHHHH
Confidence 77766665443
No 388
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.10 E-value=0.064 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-++++|+|+..||||||...|+++
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5689999999999999998888865
No 389
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.09 E-value=0.022 Score=51.52 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcH---HHHH---cCccccc-
Q 013120 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDA---ADIL---EGKSYRL- 233 (449)
Q Consensus 161 ~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~---~~~l---~~~~~~l- 233 (449)
.++.++..|++++|.|+++++....+ ......+... ..+.+.++|+||+|+..+.... .... .......
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~--~~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFP--GSLIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCC--CccchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 36788999999999999998854322 1111222111 2367999999999998543321 1111 0000111
Q ss_pred CCCeEEEEeCChhhhhccCCHH
Q 013120 234 KFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 234 ~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
...++.++..++.+++.+...+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l 120 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAI 120 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHH
Confidence 1235667777766665554443
No 390
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.06 E-value=0.0063 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
..++.|+.+|||||++.||.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999873
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.98 E-value=0.006 Score=53.97 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=24.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGS 64 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~ 64 (449)
+++|+|..+||||||+|-|.|... |.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 699999999999999999999863 6553
No 392
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.95 E-value=0.024 Score=52.09 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHhhC
Q 013120 37 IAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G 56 (449)
-+|+|+|||||||.-+.+..
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47889999999999887764
No 393
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.028 Score=58.24 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=23.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
.+++||..|+|||||++.|+|. +|...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 6999999999999999999995 454444
No 394
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.83 E-value=0.011 Score=57.93 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=41.5
Q ss_pred cEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccC
Q 013120 138 LTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 138 l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
+.||||-|--.. +...++.+. =++.|-.+|+| +|+... +....+-+-.+-....|+|+|+||+|+.+
T Consensus 203 VsfVDtvGHEpw--------LrTtirGL~---gqk~dYglLvV-aAddG~-~~~tkEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 203 VSFVDTVGHEPW--------LRTTIRGLL---GQKVDYGLLVV-AADDGV-TKMTKEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred EEEEecCCccHH--------HHHHHHHHh---ccccceEEEEE-EccCCc-chhhhHhhhhhhhhcCCEEEEEEecccCc
Confidence 689999986653 222233322 24688887766 455433 33333323333344789999999999987
Q ss_pred CC
Q 013120 218 KG 219 (449)
Q Consensus 218 ~~ 219 (449)
..
T Consensus 270 dd 271 (527)
T COG5258 270 DD 271 (527)
T ss_pred HH
Confidence 54
No 395
>PRK13695 putative NTPase; Provisional
Probab=95.82 E-value=0.16 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.+++|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 396
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.80 E-value=0.008 Score=55.58 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCC-Ccccc-hHHHHHHHHhCCCCCceEEEecccccc
Q 013120 159 VQDIENMVRSYIEKPNCIILAISPAN-QDLAT-SDAIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 159 ~~~~~~~~~~yi~~~d~iIl~v~~a~-~d~~~-~~~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
.++--.+++..+.+|..| |+=.|.. -|..+ ...+.+++++......|++++|+=..+
T Consensus 147 qqQRVAIARAL~~~P~ii-lADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 147 QQQRVAIARALINNPKII-LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred HHHHHHHHHHHhcCCCeE-EeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 344456778888888844 6644433 24444 355667788776667899999975543
No 397
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.72 E-value=0.01 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 013120 37 IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~ 57 (449)
|+++|..++|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 398
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.70 E-value=0.022 Score=40.44 Aligned_cols=53 Identities=25% Similarity=0.461 Sum_probs=31.9
Q ss_pred HHHHHHHHhcC-CCeEEEEEecCCC-cccchHHHHHHHHhCCC--CCceEEEecccc
Q 013120 162 IENMVRSYIEK-PNCIILAISPANQ-DLATSDAIKISREVDPT--GERTFGVLTKID 214 (449)
Q Consensus 162 ~~~~~~~yi~~-~d~iIl~v~~a~~-d~~~~~~~~l~~~~~~~--~~rti~VltK~D 214 (449)
++..+...+++ +++|++++++..+ +..-.+-+.+.+++.+. +.|.+.|+||+|
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34556666766 5677777776654 34445556677777765 689999999998
No 399
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.68 E-value=0.021 Score=49.87 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=33.0
Q ss_pred HHHHhcCCCeEEEEEecCCCccc-chHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 166 VRSYIEKPNCIILAISPANQDLA-TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 166 ~~~yi~~~d~iIl~v~~a~~d~~-~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+.+.++++|.|+++++....... .....+.++.. ..+.+.|+|+||+|+.++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 34668899999888874432111 22333333332 235899999999999854
No 400
>PRK12289 GTPase RsgA; Reviewed
Probab=95.66 E-value=0.013 Score=58.23 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCC--cHHHHHcCcccccCCCeEEE
Q 013120 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 163 ~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v 240 (449)
..+.+.++.++|.+++|++..+.++......+++..+...+.+.++|+||+|++++.. .+.+.+. .++..++.+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~----~~g~~v~~i 155 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQ----QWGYQPLFI 155 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHH----hcCCeEEEE
Confidence 4556778999999988887554333332223333444445899999999999985421 1222221 223345556
Q ss_pred EeCChhhhhccCC
Q 013120 241 VNRSQADINKNVD 253 (449)
Q Consensus 241 ~~~s~~~~~~~~~ 253 (449)
++..+.+++.+..
T Consensus 156 SA~tg~GI~eL~~ 168 (352)
T PRK12289 156 SVETGIGLEALLE 168 (352)
T ss_pred EcCCCCCHHHHhh
Confidence 6666665554443
No 401
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.65 E-value=0.25 Score=48.08 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHH---HHHHhc-CCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENM---VRSYIE-KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~---~~~yi~-~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~Vlt 211 (449)
.++.||||.|--.+... +....+.+ +...+. .|+-+++++++.. =+.++.-++.+...-.=+-+|+|
T Consensus 222 ~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~~~ap~e~llvlDAtt----Gqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 222 IDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDDPDAPHEILLVLDATT----GQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCEEEEeCcccccCchh-----HHHHHHHHHHHhccccCCCCceEEEEEEccc----ChhHHHHHHHHHHhcCCceEEEE
Confidence 57999999997665432 55554443 222222 3455766666443 34566666666665556678999
Q ss_pred cccccCCCCcHHHH
Q 013120 212 KIDLMDKGTDAADI 225 (449)
Q Consensus 212 K~D~~~~~~~~~~~ 225 (449)
|+|...++..+..+
T Consensus 293 KlDgtAKGG~il~I 306 (340)
T COG0552 293 KLDGTAKGGIILSI 306 (340)
T ss_pred ecccCCCcceeeeH
Confidence 99987777654444
No 402
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.63 E-value=0.076 Score=56.94 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPR 62 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~ 62 (449)
.++++|..|+|||||++.|+|.. |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 58999999999999999999964 64
No 403
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.60 E-value=0.014 Score=53.34 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=44.7
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-----chHHHHHHHHhCCCCCceEEEec
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-----~~~~~~l~~~~~~~~~rti~Vlt 211 (449)
-|.++|--|.... ++.....--..-.++.+++|++.+....++. .+.+++.+.+..| ..+.+..++
T Consensus 54 ~LnlwDcGgqe~f--------men~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~h 124 (295)
T KOG3886|consen 54 VLNLWDCGGQEEF--------MENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLH 124 (295)
T ss_pred eeehhccCCcHHH--------HHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEe
Confidence 4678898775431 1111111112235678889888876655332 2344555555555 578899999
Q ss_pred cccccCCCC
Q 013120 212 KIDLMDKGT 220 (449)
Q Consensus 212 K~D~~~~~~ 220 (449)
|+|++..+.
T Consensus 125 KmDLv~~d~ 133 (295)
T KOG3886|consen 125 KMDLVQEDA 133 (295)
T ss_pred echhcccch
Confidence 999997654
No 404
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.58 E-value=0.0092 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++|+|..++|||||+++|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999974
No 405
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.56 E-value=0.073 Score=45.54 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=40.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhC--CCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD--PTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~--~~~~rti~VltK~ 213 (449)
.++.+||+|+... ......+..+|.+++++.+...+. .....+++.+. ....+..+|+|++
T Consensus 45 yd~VIiD~p~~~~---------------~~~~~~l~~aD~vviv~~~~~~s~--~~~~~~l~~l~~~~~~~~~~lVvN~~ 107 (139)
T cd02038 45 YDYIIIDTGAGIS---------------DNVLDFFLAADEVIVVTTPEPTSI--TDAYALIKKLAKQLRVLNFRVVVNRA 107 (139)
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHhCCeEEEEcCCChhHH--HHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5899999998543 224567889999888876553332 22233333332 1246788999999
Q ss_pred ccc
Q 013120 214 DLM 216 (449)
Q Consensus 214 D~~ 216 (449)
+..
T Consensus 108 ~~~ 110 (139)
T cd02038 108 ESP 110 (139)
T ss_pred CCH
Confidence 754
No 406
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.54 E-value=0.0076 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999965
No 407
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.51 E-value=0.14 Score=41.57 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=39.1
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-hHHHHHHHHhCCC-CCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPT-GERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~-~~~~~l~~~~~~~-~~rti~VltK 212 (449)
++.+||+|+... ..+...+..+|.+|+++.+...+... ...++.+++.... ..++.+|+|+
T Consensus 44 D~IIiDtpp~~~---------------~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD---------------EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC---------------HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 789999998764 12456678899988887655433222 2333445555543 5678888885
No 408
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.50 E-value=0.0098 Score=54.08 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=22.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~ 63 (449)
-|.|+|+.+||||||+|+|+|.- .|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l-~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL-KPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc-ccCC
Confidence 49999999999999999999963 3443
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.45 E-value=0.091 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHhhC
Q 013120 37 IAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G 56 (449)
+++.|..++|||++...|..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999999985
No 410
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.0094 Score=58.70 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+..|.|+..--+||+|.-+.|+-..-.-++.|-+ ..|...+||-.+.+ +
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~v------------------------ddgdtvtdfla~er------e 85 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDV------------------------DDGDTVTDFLAIER------E 85 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhccccc------------------------CCCchHHHHHHHHH------h
Confidence 34469999999999999999988432100111100 11223334433322 1
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.| ..+-...+.+ ......+.+|||||-.+...+ +.+.++--|.++.|++ ++... ..+.
T Consensus 86 --rg--itiqsaav~f---dwkg~rinlidtpghvdf~le-------------verclrvldgavav~d-asagv-e~qt 143 (753)
T KOG0464|consen 86 --RG--ITIQSAAVNF---DWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGAVAVFD-ASAGV-EAQT 143 (753)
T ss_pred --cC--ceeeeeeeec---ccccceEeeecCCCcceEEEE-------------HHHHHHHhcCeEEEEe-ccCCc-ccce
Confidence 12 1111122221 223457899999999887654 4555556676766655 33332 3445
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+...++.+....|.++.+||+|....
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhhh
Confidence 66778888889999999999998743
No 411
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.011 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
-|+++|..|+|||||||.|.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999975
No 412
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.014 Score=51.30 Aligned_cols=31 Identities=39% Similarity=0.721 Sum_probs=25.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
.+.+||+.+||||||+++|+++ ++-+.|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 6899999999999999999997 444555443
No 413
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.36 E-value=0.099 Score=57.40 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.|+++|..|||||||++.|+|..
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999963
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.33 E-value=0.014 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|.++|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999985
No 415
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.30 E-value=0.013 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.759 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
|.|.|+|..|+|||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 416
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.013 Score=52.15 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=28.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCccccccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p 71 (449)
-+++.|+.|+|||||+.+|....-+--+...+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 478889999999999999998764445556677776
No 417
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.29 E-value=0.018 Score=51.45 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..+||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 418
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.19 E-value=0.048 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
+++|||+--|||||||--|+.-.
T Consensus 135 RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred EEEEEecccCCcceeEeeeeecc
Confidence 79999999999999998888654
No 419
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.18 E-value=0.12 Score=56.61 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999964
No 420
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.15 E-value=0.075 Score=54.93 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=25.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
++-+..|+|..++|||.+|++++|+.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~ 450 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSM 450 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccc
Confidence 567899999999999999999999976
No 421
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.13 E-value=0.11 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++|+|..|+|||||++.|+|..
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999974
No 422
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.13 E-value=0.11 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|+|..
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999963
No 423
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.12 E-value=0.019 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999999963
No 424
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.11 E-value=0.16 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.+|..+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999999853
No 425
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.10 E-value=0.019 Score=52.77 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++++|..|||||||++.|+|.. |...|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 58999999999999999999963 434443
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.08 E-value=0.019 Score=52.45 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=26.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC-CCcccCccccccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRP 71 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~-~lP~~~~~~Tr~p 71 (449)
.|+++|.++||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 68999999999999999999852 1223333466666
No 427
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.01 E-value=0.094 Score=46.77 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
...++.+|||||.... .+...+..+|.+|+++.+...+ .....++.+.++..+.+..+|+||+
T Consensus 91 ~~~d~viiDtpp~~~~---------------~~~~~l~~aD~vliv~~~~~~~--~~~~~~~~~~l~~~~~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGC---------------PVIASLTGADAALLVTEPTPSG--LHDLERAVELVRHFGIPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcH---------------HHHHHHHcCCEEEEEecCCccc--HHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3468999999976541 2445678899998888766432 2334444455554566788999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|...
T Consensus 154 ~~~~ 157 (179)
T cd03110 154 DLND 157 (179)
T ss_pred CCCc
Confidence 9753
No 428
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.01 E-value=0.091 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
+|..++-|-=|||||||||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4788999999999999999999753
No 429
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.00 E-value=0.02 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 430
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.021 Score=52.54 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++++|..|+|||||++.|.|. +|...|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~ 55 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSGT 55 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCccE
Confidence 7999999999999999999996 3444443
No 431
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.02 Score=53.61 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999996
No 432
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.96 E-value=0.029 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..|+||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 433
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.96 E-value=0.15 Score=55.87 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.|+++|..|+|||||++.|+|..
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999964
No 434
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.11 Score=46.76 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=27.8
Q ss_pred CCCCCe---EEEECCCCCCHHHHHHHhhCCCCCcccCccccc
Q 013120 31 WDSLPA---IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (449)
Q Consensus 31 ~~~lP~---IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr 69 (449)
..++|. -+++|+.||||||||..++. .+|.++|.++-
T Consensus 21 sl~i~~g~iTs~IGPNGAGKSTLLS~~sR--L~~~d~G~i~i 60 (252)
T COG4604 21 SLDIPKGGITSIIGPNGAGKSTLLSMMSR--LLKKDSGEITI 60 (252)
T ss_pred eeeecCCceeEEECCCCccHHHHHHHHHH--hccccCceEEE
Confidence 345553 68899999999999998875 46777776543
No 435
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.94 E-value=0.023 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 436
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.92 E-value=0.023 Score=52.21 Aligned_cols=28 Identities=32% Similarity=0.659 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
.++++|..+|||||+|++|+|. .|..+|
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl--~~~~~G 58 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL--VRPRSG 58 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCe
Confidence 5899999999999999999996 344344
No 437
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.91 E-value=0.021 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~ 55 (449)
+.|.|+|+|.+||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999998
No 438
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.90 E-value=0.24 Score=39.67 Aligned_cols=33 Identities=15% Similarity=0.451 Sum_probs=24.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
.++.+||+||.... .....+..+|.+|+++.+.
T Consensus 40 ~d~viiD~p~~~~~---------------~~~~~l~~ad~viv~~~~~ 72 (104)
T cd02042 40 YDYIIIDTPPSLGL---------------LTRNALAAADLVLIPVQPS 72 (104)
T ss_pred CCEEEEeCcCCCCH---------------HHHHHHHHCCEEEEeccCC
Confidence 57999999997651 2346677899998877554
No 439
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.88 E-value=0.14 Score=56.18 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.|+++|..|||||||++.|+|..
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 59999999999999999999963
No 440
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.88 E-value=0.03 Score=50.62 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=25.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC-CCcccCccccccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRP 71 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~-~lP~~~~~~Tr~p 71 (449)
-|+++|..|||||||+++|+... -+......+||.|
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 58899999999999999998752 1122233455555
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.023 Score=52.64 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 442
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.85 E-value=0.32 Score=44.35 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~ 55 (449)
.+++.|..++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 443
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.85 E-value=0.024 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999963
No 444
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.83 E-value=0.027 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 445
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.83 E-value=0.025 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999973
No 446
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.82 E-value=0.17 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|.|..
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999963
No 447
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.027 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 448
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.81 E-value=0.16 Score=55.73 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|.|..
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 59999999999999999999963
No 449
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.80 E-value=0.048 Score=53.17 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|.|..||||+||||+|++.
T Consensus 175 NILisGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGF 196 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhc
Confidence 6999999999999999999985
No 450
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.78 E-value=0.027 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 451
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.78 E-value=0.023 Score=56.28 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=25.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
..|+|+|.+||||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 36999999999999999999985 455444433
No 452
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.77 E-value=0.026 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 453
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.77 E-value=0.025 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999996
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.026 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 455
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.028 Score=50.24 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|+|||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 456
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.027 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 457
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.74 E-value=0.11 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
.|+++|+.++||||++..+....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999965443
No 458
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.73 E-value=0.027 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999963
No 459
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.72 E-value=0.085 Score=50.82 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCC--cHHHHHcCcccccCCCeEEEE
Q 013120 164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGVV 241 (449)
Q Consensus 164 ~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~ 241 (449)
..+...++.+|.||+|+++. ... ......+.+.+. +.+.|+|+||+|+.++.. .+.+.++. .+...+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar-~p~-~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~----~~~~vi~iS 84 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDAR-IPL-SSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEE----KGIKALAIN 84 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCC-CCC-CCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHH----cCCeEEEEE
Confidence 33678899999998888743 222 222233444442 679999999999975421 12222221 122345666
Q ss_pred eCChhhhhccCCHHHHH
Q 013120 242 NRSQADINKNVDMIAAR 258 (449)
Q Consensus 242 ~~s~~~~~~~~~~~~~~ 258 (449)
.....+++.+...+...
T Consensus 85 a~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKL 101 (276)
T ss_pred CCCcccHHHHHHHHHHH
Confidence 66666665554444333
No 460
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.03 Score=52.35 Aligned_cols=28 Identities=29% Similarity=0.569 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
.++++|..|||||||++.|+|.. |...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 69999999999999999999963 44444
No 461
>PRK01889 GTPase RsgA; Reviewed
Probab=94.68 E-value=0.014 Score=58.29 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=43.7
Q ss_pred hcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhh
Q 013120 170 IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADIN 249 (449)
Q Consensus 170 i~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 249 (449)
+.+.|.+++|+. ++.++.....-+++..+...+.+.++|+||+|++++..+..+.+... ..+...+.+.+.++.+++
T Consensus 110 aANvD~vliV~s-~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCS-LNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEe-cCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHH
Confidence 467888766654 45555544444455555555778899999999986522222222221 223344555665555443
No 462
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.68 E-value=0.028 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|+|||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.67 E-value=0.03 Score=41.63 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 013120 37 IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~ 57 (449)
|++.|.+++||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 464
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.67 E-value=0.027 Score=52.70 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 465
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.028 Score=52.05 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999963
No 466
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.03 Score=50.91 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~ 63 (449)
..+++|..+|||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 6899999999999999999997 34544
No 467
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.64 E-value=0.03 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|+|||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 468
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.64 E-value=0.031 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
-.++++|..|+|||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999964
No 469
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.64 E-value=0.028 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 470
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.033 Score=48.61 Aligned_cols=31 Identities=39% Similarity=0.535 Sum_probs=24.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCccc
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~ 67 (449)
..++++|..++|||||+++|.|.. |...|.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i 56 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEI 56 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEE
Confidence 378999999999999999999963 4444443
No 471
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.63 E-value=0.033 Score=50.91 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
.++++|..|+|||||++.|.|.. |...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 69999999999999999999963 44444
No 472
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.62 E-value=0.031 Score=51.63 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++++|..++|||||++.|.|.. |...|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 67 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQ 67 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCee
Confidence 68899999999999999999963 444453
No 473
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.62 E-value=0.029 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||+++|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999963
No 474
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.032 Score=52.00 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++++|..++|||||++.|+|.. |-..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 58999999999999999999973 434443
No 475
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.61 E-value=0.031 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++|+|..++|||||+++|+|.. |...|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 69999999999999999999963 444454
No 476
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.03 Score=54.75 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++++|..|||||||++.|.|. +|-..|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcE
Confidence 6999999999999999999996 3434454
No 477
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.11 Score=58.96 Aligned_cols=82 Identities=23% Similarity=0.241 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHH---HHHHHH--hcCCCeEEEEEecCCCcccch---HHHHHH-------HHhC
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIE---NMVRSY--IEKPNCIILAISPANQDLATS---DAIKIS-------REVD 200 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~---~~~~~y--i~~~d~iIl~v~~a~~d~~~~---~~~~l~-------~~~~ 200 (449)
.+..+|||.|-..... ++++.....+. .+.++| -+.-|.||++++-+. +.+. +...++ +++.
T Consensus 174 deaVlIDtaGry~~q~-s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~--L~~~~~~~~~~~~~~LR~RL~El~ 250 (1188)
T COG3523 174 DEAVLIDTAGRYITQD-SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSD--LLTADPAEREALARTLRARLQELR 250 (1188)
T ss_pred cceEEEcCCcceeccc-CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHH--HcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578999999665443 23333333333 334455 345688999886432 1111 111122 2222
Q ss_pred ---CCCCceEEEeccccccCCCC
Q 013120 201 ---PTGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 201 ---~~~~rti~VltK~D~~~~~~ 220 (449)
...-|+.+++||.|++..-+
T Consensus 251 ~tL~~~~PVYl~lTk~Dll~GF~ 273 (1188)
T COG3523 251 ETLHARLPVYLVLTKADLLPGFE 273 (1188)
T ss_pred HhhccCCceEEEEecccccccHH
Confidence 23579999999999987543
No 478
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.56 E-value=0.027 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 479
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.56 E-value=0.031 Score=52.40 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=24.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++++|..|||||||++.|+|.. |-.+|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 59 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSGE 59 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCCE
Confidence 68999999999999999999973 444443
No 480
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.56 E-value=0.033 Score=51.42 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~ 67 (449)
.++++|..|||||||++.|+|.. |-.+|.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 58899999999999999999973 4444544
No 481
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.55 E-value=0.032 Score=52.67 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
-++++|..||||||||.+|.|. ++-..|
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~--l~p~~G 57 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL--LKPKSG 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--CCCCCC
Confidence 4899999999999999999995 444444
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.53 E-value=0.027 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
..++++|..+||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999999963
No 483
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.52 E-value=0.032 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|+|||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 484
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.52 E-value=0.033 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 485
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.51 E-value=0.032 Score=52.47 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
-++++|+-|||||||+.+|+|. ++-..|.++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 4899999999999999999995 343445444
No 486
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.035 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++|||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 487
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.50 E-value=0.069 Score=46.51 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=26.6
Q ss_pred CeEEEEEecCCCcccchHHHHHH-HHhCCCCCceEEEeccccccCC
Q 013120 174 NCIILAISPANQDLATSDAIKIS-REVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 174 d~iIl~v~~a~~d~~~~~~~~l~-~~~~~~~~rti~VltK~D~~~~ 218 (449)
|.+++|++.. ... ......+. ..+...+.+.|+|+||+|+..+
T Consensus 1 Dvvl~VvD~~-~p~-~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDAR-DPL-GTRSPDIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEecc-CCc-cccCHHHHHHHHhcCCCCEEEEEechhcCCH
Confidence 5677777643 222 22222233 3455567999999999999754
No 488
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.033 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999963
No 489
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.47 E-value=0.034 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 490
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.46 E-value=0.034 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999963
No 491
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.46 E-value=0.039 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..++|||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 492
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.036 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 493
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.033 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 494
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.43 E-value=0.037 Score=51.22 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 495
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.42 E-value=0.035 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 496
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.42 E-value=0.035 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999963
No 497
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.42 E-value=0.035 Score=52.25 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~ 67 (449)
.++++|..|||||||++.|+|. +|-..|.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 60 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL--IDPTEGSI 60 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 6899999999999999999996 34344533
No 498
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.41 E-value=0.039 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999997
No 499
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.41 E-value=0.041 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++|||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 500
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.37 E-value=0.04 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
Done!