Query 013120
Match_columns 449
No_of_seqs 330 out of 3082
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 5.1E-69 1.7E-73 571.6 45.0 432 1-443 26-465 (772)
2 3szr_A Interferon-induced GTP- 100.0 2.3E-56 7.9E-61 472.4 39.6 411 32-443 43-465 (608)
3 3t34_A Dynamin-related protein 100.0 1.6E-53 5.6E-58 425.2 32.0 331 1-331 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 2.2E-47 7.4E-52 379.8 39.6 337 1-348 6-344 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 9.1E-41 3.1E-45 326.8 31.1 310 2-320 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 4.7E-38 1.6E-42 305.1 35.0 298 1-309 1-298 (299)
7 2j69_A Bacterial dynamin-like 99.8 3.4E-20 1.2E-24 198.6 21.8 172 33-218 68-245 (695)
8 3iev_A GTP-binding protein ERA 99.7 1.4E-17 4.8E-22 161.8 11.6 208 34-303 10-221 (308)
9 1wf3_A GTP-binding protein; GT 99.7 1.9E-17 6.3E-22 160.3 11.0 203 34-303 7-213 (301)
10 3iby_A Ferrous iron transport 99.6 9.6E-16 3.3E-20 144.8 8.1 154 34-254 1-160 (256)
11 1xzp_A Probable tRNA modificat 99.6 2.1E-15 7.2E-20 154.5 10.0 158 35-258 244-402 (482)
12 1ega_A Protein (GTP-binding pr 99.6 1.9E-16 6.6E-21 153.2 1.3 122 33-217 7-130 (301)
13 2xtp_A GTPase IMAP family memb 99.6 8E-15 2.7E-19 138.7 10.4 126 33-217 21-153 (260)
14 3gee_A MNME, tRNA modification 99.6 1.1E-15 3.9E-20 156.4 4.7 157 35-255 234-392 (476)
15 4dhe_A Probable GTP-binding pr 99.6 6.4E-15 2.2E-19 135.6 8.8 127 33-218 28-159 (223)
16 3geh_A MNME, tRNA modification 99.5 1.3E-15 4.5E-20 155.3 3.6 156 35-257 225-380 (462)
17 1kao_A RAP2A; GTP-binding prot 99.5 2.8E-14 9.7E-19 124.2 10.9 105 137-254 52-159 (167)
18 3lxw_A GTPase IMAP family memb 99.5 3.2E-14 1.1E-18 133.7 11.3 127 35-217 22-153 (247)
19 3tkl_A RAS-related protein RAB 99.5 2.3E-14 7.9E-19 128.8 9.4 155 33-253 15-171 (196)
20 1mky_A Probable GTP-binding pr 99.5 1.5E-14 5.2E-19 147.3 8.5 162 34-260 1-165 (439)
21 2dyk_A GTP-binding protein; GT 99.5 2.1E-14 7.2E-19 124.6 7.8 149 34-250 1-151 (161)
22 3a1s_A Iron(II) transport prot 99.5 1.6E-14 5.4E-19 136.6 7.5 150 35-255 6-161 (258)
23 2qu8_A Putative nucleolar GTP- 99.5 5.4E-14 1.8E-18 130.2 10.8 135 26-219 21-158 (228)
24 1svi_A GTP-binding protein YSX 99.5 4.2E-14 1.4E-18 127.1 9.7 126 33-219 22-150 (195)
25 3pqc_A Probable GTP-binding pr 99.5 6.3E-14 2.2E-18 125.6 10.8 124 33-219 22-149 (195)
26 3i8s_A Ferrous iron transport 99.5 1.2E-14 4.1E-19 138.7 5.9 152 35-253 4-161 (274)
27 3lxx_A GTPase IMAP family memb 99.5 5E-14 1.7E-18 131.5 10.0 130 33-219 28-161 (239)
28 2g6b_A RAS-related protein RAB 99.5 3.2E-14 1.1E-18 125.9 8.1 121 33-218 9-131 (180)
29 1u8z_A RAS-related protein RAL 99.5 3.8E-14 1.3E-18 123.5 8.3 117 35-218 5-124 (168)
30 2a9k_A RAS-related protein RAL 99.5 7.8E-14 2.7E-18 124.0 10.3 119 33-218 17-138 (187)
31 2gj8_A MNME, tRNA modification 99.5 6.5E-14 2.2E-18 123.8 9.6 125 35-218 5-130 (172)
32 4dcu_A GTP-binding protein ENG 99.5 1.2E-13 4.1E-18 141.3 12.9 130 33-220 194-323 (456)
33 2qpt_A EH domain-containing pr 99.5 6.3E-14 2.2E-18 146.1 11.0 166 32-218 63-233 (550)
34 2oil_A CATX-8, RAS-related pro 99.5 5.1E-14 1.8E-18 126.5 9.0 119 34-218 25-145 (193)
35 3t5d_A Septin-7; GTP-binding p 99.5 7.2E-14 2.5E-18 133.3 10.3 136 35-218 9-159 (274)
36 2lkc_A Translation initiation 99.5 7.5E-14 2.6E-18 123.3 9.7 154 32-255 6-165 (178)
37 1g16_A RAS-related protein SEC 99.5 4.5E-14 1.5E-18 123.5 8.1 116 35-217 4-122 (170)
38 2il1_A RAB12; G-protein, GDP, 99.5 4.7E-14 1.6E-18 126.9 8.1 119 34-218 26-146 (192)
39 1z08_A RAS-related protein RAB 99.5 2.2E-14 7.5E-19 125.6 5.8 118 35-218 7-126 (170)
40 3q72_A GTP-binding protein RAD 99.5 3.9E-14 1.3E-18 123.7 7.4 117 34-219 2-122 (166)
41 1z0j_A RAB-22, RAS-related pro 99.5 3.9E-14 1.3E-18 123.9 7.3 118 35-218 7-126 (170)
42 1zbd_A Rabphilin-3A; G protein 99.5 8.6E-14 2.9E-18 126.0 9.7 120 33-218 7-128 (203)
43 3b1v_A Ferrous iron uptake tra 99.5 3.1E-14 1.1E-18 135.5 7.0 150 34-254 3-157 (272)
44 1z0f_A RAB14, member RAS oncog 99.5 5.8E-14 2E-18 123.9 8.2 120 33-218 14-135 (179)
45 1c1y_A RAS-related protein RAP 99.5 4.8E-14 1.6E-18 123.0 7.5 70 136-218 51-123 (167)
46 2bov_A RAla, RAS-related prote 99.5 1.1E-13 3.8E-18 125.3 10.2 119 33-218 13-134 (206)
47 2hjg_A GTP-binding protein ENG 99.5 1.3E-13 4.5E-18 140.2 11.7 130 33-220 174-303 (436)
48 3bc1_A RAS-related protein RAB 99.5 1.5E-13 5.2E-18 122.8 10.7 70 136-218 70-142 (195)
49 3clv_A RAB5 protein, putative; 99.5 7.3E-14 2.5E-18 125.9 8.6 65 136-214 93-158 (208)
50 2qtf_A Protein HFLX, GTP-bindi 99.5 2E-13 6.9E-18 135.2 12.4 128 32-219 177-308 (364)
51 3cph_A RAS-related protein SEC 99.5 9.3E-14 3.2E-18 126.6 9.3 157 33-256 19-177 (213)
52 2bme_A RAB4A, RAS-related prot 99.5 7E-14 2.4E-18 124.5 8.2 119 33-217 9-129 (186)
53 4dcu_A GTP-binding protein ENG 99.5 9.2E-14 3.1E-18 142.2 9.9 126 32-218 21-146 (456)
54 2hjg_A GTP-binding protein ENG 99.5 4.6E-14 1.6E-18 143.6 7.6 157 34-256 3-160 (436)
55 2fg5_A RAB-22B, RAS-related pr 99.5 4E-14 1.4E-18 127.3 6.3 69 136-217 72-142 (192)
56 2fn4_A P23, RAS-related protei 99.5 1.2E-13 4E-18 122.2 9.0 119 33-218 8-129 (181)
57 1ek0_A Protein (GTP-binding pr 99.5 7.5E-14 2.6E-18 122.0 7.5 117 35-218 4-123 (170)
58 4djt_A GTP-binding nuclear pro 99.5 5.4E-14 1.8E-18 128.9 6.8 111 136-259 61-173 (218)
59 1upt_A ARL1, ADP-ribosylation 99.5 6.8E-14 2.3E-18 122.6 7.1 116 33-219 6-124 (171)
60 3tw8_B RAS-related protein RAB 99.5 4.4E-14 1.5E-18 124.9 5.7 119 33-218 8-128 (181)
61 2ew1_A RAS-related protein RAB 99.5 1.1E-13 3.7E-18 125.8 8.4 119 34-218 26-146 (201)
62 2y8e_A RAB-protein 6, GH09086P 99.5 5.6E-14 1.9E-18 124.0 6.2 118 35-218 15-134 (179)
63 2gf9_A RAS-related protein RAB 99.5 1.3E-13 4.6E-18 123.3 8.7 119 34-218 22-142 (189)
64 4dsu_A GTPase KRAS, isoform 2B 99.4 1.3E-13 4.5E-18 122.8 8.5 148 35-250 5-155 (189)
65 2efe_B Small GTP-binding prote 99.4 1.5E-13 5.3E-18 121.6 8.7 118 35-219 13-133 (181)
66 2bcg_Y Protein YP2, GTP-bindin 99.4 1.9E-13 6.6E-18 124.0 9.5 119 34-218 8-128 (206)
67 2nzj_A GTP-binding protein REM 99.4 1.2E-13 4.1E-18 121.5 7.8 119 34-218 4-126 (175)
68 2a5j_A RAS-related protein RAB 99.4 1.9E-13 6.5E-18 122.6 9.1 118 34-217 21-140 (191)
69 3kkq_A RAS-related protein M-R 99.4 2.8E-13 9.5E-18 120.4 10.1 152 33-251 17-172 (183)
70 1wms_A RAB-9, RAB9, RAS-relate 99.4 1.9E-13 6.4E-18 120.6 8.9 103 136-251 56-164 (177)
71 3k53_A Ferrous iron transport 99.4 4.5E-14 1.5E-18 134.5 5.1 152 33-255 2-160 (271)
72 2erx_A GTP-binding protein DI- 99.4 1.1E-13 3.7E-18 121.2 7.2 69 137-218 52-124 (172)
73 1z06_A RAS-related protein RAB 99.4 1.3E-13 4.6E-18 123.3 7.6 147 33-245 19-169 (189)
74 3dz8_A RAS-related protein RAB 99.4 6.7E-14 2.3E-18 125.7 5.5 120 33-218 22-143 (191)
75 3q85_A GTP-binding protein REM 99.4 1.3E-13 4.3E-18 120.7 7.1 71 136-218 51-124 (169)
76 1z2a_A RAS-related protein RAB 99.4 1.4E-13 4.7E-18 120.2 7.3 69 136-218 54-124 (168)
77 2f7s_A C25KG, RAS-related prot 99.4 2.1E-13 7E-18 124.9 8.8 69 136-218 84-156 (217)
78 2ce2_X GTPase HRAS; signaling 99.4 2.9E-13 9.8E-18 117.5 9.3 147 36-250 5-154 (166)
79 2hup_A RAS-related protein RAB 99.4 2.6E-13 8.9E-18 123.0 9.1 69 136-217 78-148 (201)
80 1zj6_A ADP-ribosylation factor 99.4 4.5E-13 1.5E-17 119.7 10.6 114 33-218 15-132 (187)
81 1r8s_A ADP-ribosylation factor 99.4 3.4E-13 1.2E-17 117.4 9.5 69 136-218 44-116 (164)
82 2h57_A ADP-ribosylation factor 99.4 1.6E-13 5.6E-18 122.9 7.6 116 33-218 20-141 (190)
83 1r2q_A RAS-related protein RAB 99.4 2E-13 6.9E-18 119.2 7.7 70 136-218 55-126 (170)
84 4bas_A ADP-ribosylation factor 99.4 3.5E-13 1.2E-17 121.3 9.4 117 33-219 16-143 (199)
85 3t5g_A GTP-binding protein RHE 99.4 2.1E-13 7.1E-18 120.9 7.8 155 34-255 6-163 (181)
86 2p5s_A RAS and EF-hand domain 99.4 1.9E-13 6.5E-18 123.6 7.6 68 136-216 77-146 (199)
87 2wji_A Ferrous iron transport 99.4 1.2E-13 4.2E-18 121.0 6.1 117 35-217 4-122 (165)
88 3oes_A GTPase rhebl1; small GT 99.4 1.6E-13 5.5E-18 124.3 6.9 155 33-255 23-181 (201)
89 2cxx_A Probable GTP-binding pr 99.4 5.5E-13 1.9E-17 119.0 10.1 123 34-218 1-137 (190)
90 2hxs_A RAB-26, RAS-related pro 99.4 1.7E-13 5.8E-18 121.0 6.7 100 136-252 56-164 (178)
91 1vg8_A RAS-related protein RAB 99.4 2.4E-13 8.3E-18 123.2 7.9 120 33-218 7-132 (207)
92 2o52_A RAS-related protein RAB 99.4 2.2E-13 7.6E-18 123.3 7.6 155 34-255 25-182 (200)
93 1ky3_A GTP-binding protein YPT 99.4 2.1E-13 7.2E-18 120.6 6.8 151 33-251 7-168 (182)
94 1zd9_A ADP-ribosylation factor 99.4 6.6E-13 2.3E-17 118.8 9.8 113 35-218 23-139 (188)
95 1ksh_A ARF-like protein 2; sma 99.4 5.6E-13 1.9E-17 118.8 9.2 115 33-219 17-135 (186)
96 2fu5_C RAS-related protein RAB 99.4 8.4E-14 2.9E-18 123.8 3.8 69 136-218 57-128 (183)
97 1x3s_A RAS-related protein RAB 99.4 7.2E-13 2.5E-17 118.7 9.7 154 35-256 16-173 (195)
98 2atv_A RERG, RAS-like estrogen 99.4 6E-13 2.1E-17 119.9 8.7 117 34-218 28-147 (196)
99 3con_A GTPase NRAS; structural 99.4 1E-12 3.5E-17 117.5 9.5 116 35-218 22-141 (190)
100 2yc2_C IFT27, small RAB-relate 99.4 1.6E-13 5.5E-18 124.3 4.3 69 136-217 73-146 (208)
101 2x77_A ADP-ribosylation factor 99.4 4.9E-13 1.7E-17 119.6 6.7 114 33-218 21-138 (189)
102 3qq5_A Small GTP-binding prote 99.4 5.5E-13 1.9E-17 134.3 7.8 161 33-258 33-193 (423)
103 2h17_A ADP-ribosylation factor 99.4 7.8E-13 2.7E-17 117.5 7.5 114 33-218 20-137 (181)
104 2q3h_A RAS homolog gene family 99.4 1E-12 3.4E-17 118.7 8.2 119 32-218 18-139 (201)
105 1fzq_A ADP-ribosylation factor 99.4 2.2E-12 7.5E-17 114.8 9.9 115 33-219 15-133 (181)
106 3cpj_B GTP-binding protein YPT 99.4 7.2E-13 2.5E-17 122.1 6.9 119 33-217 12-132 (223)
107 2ged_A SR-beta, signal recogni 99.4 3.8E-12 1.3E-16 114.0 11.4 118 33-219 47-172 (193)
108 2wjg_A FEOB, ferrous iron tran 99.3 3.7E-13 1.3E-17 120.1 4.6 119 33-217 6-126 (188)
109 1moz_A ARL1, ADP-ribosylation 99.3 1.8E-12 6.2E-17 114.9 9.0 114 33-218 17-134 (183)
110 1lnz_A SPO0B-associated GTP-bi 99.3 1E-13 3.5E-18 136.0 0.8 160 34-255 158-324 (342)
111 3cbq_A GTP-binding protein REM 99.3 2.7E-12 9.1E-17 115.9 10.0 103 137-252 73-179 (195)
112 3reg_A RHO-like small GTPase; 99.3 3.1E-13 1.1E-17 121.4 3.7 116 35-218 24-142 (194)
113 3l0i_B RAS-related protein RAB 99.3 6.9E-14 2.3E-18 126.5 -0.7 148 33-250 32-185 (199)
114 2gf0_A GTP-binding protein DI- 99.3 1.2E-12 4.2E-17 117.7 7.5 101 137-251 57-161 (199)
115 3llu_A RAS-related GTP-binding 99.3 3.1E-12 1.1E-16 115.3 10.0 120 33-218 19-144 (196)
116 2atx_A Small GTP binding prote 99.3 6.1E-13 2.1E-17 119.4 5.2 116 35-218 19-137 (194)
117 3t1o_A Gliding protein MGLA; G 99.3 9.2E-13 3.2E-17 118.1 6.2 69 137-218 75-150 (198)
118 2gco_A H9, RHO-related GTP-bin 99.3 4.8E-13 1.7E-17 121.1 4.2 69 136-218 73-144 (201)
119 2fv8_A H6, RHO-related GTP-bin 99.3 4.2E-13 1.4E-17 122.1 3.8 69 136-218 73-144 (207)
120 2b6h_A ADP-ribosylation factor 99.3 1E-12 3.5E-17 118.2 6.3 113 34-218 29-145 (192)
121 1mh1_A RAC1; GTP-binding, GTPa 99.3 3.9E-13 1.3E-17 119.4 3.4 68 137-218 54-124 (186)
122 3ljb_A Interferon-induced GTP- 99.3 2.9E-12 1E-16 120.0 9.4 116 328-443 3-125 (271)
123 3c5c_A RAS-like protein 12; GD 99.3 1E-12 3.4E-17 117.7 6.1 114 35-217 22-141 (187)
124 1h65_A Chloroplast outer envel 99.3 6.9E-12 2.4E-16 119.2 11.5 124 34-219 39-170 (270)
125 2j1l_A RHO-related GTP-binding 99.3 7.4E-13 2.5E-17 121.3 4.5 116 35-218 35-153 (214)
126 1f6b_A SAR1; gtpases, N-termin 99.3 2.7E-12 9.3E-17 116.0 8.1 113 33-217 24-140 (198)
127 1m2o_B GTP-binding protein SAR 99.3 4.4E-12 1.5E-16 113.8 9.4 113 33-217 22-138 (190)
128 2e87_A Hypothetical protein PH 99.3 1.2E-11 4E-16 122.5 13.2 125 33-218 166-295 (357)
129 2fh5_B SR-beta, signal recogni 99.3 6.6E-12 2.3E-16 114.5 10.1 120 33-219 6-131 (214)
130 4dkx_A RAS-related protein RAB 99.3 2.6E-12 8.8E-17 118.0 6.7 102 136-250 62-165 (216)
131 3def_A T7I23.11 protein; chlor 99.3 1.3E-11 4.5E-16 116.7 11.8 124 34-218 36-166 (262)
132 2j0v_A RAC-like GTP-binding pr 99.3 4.7E-13 1.6E-17 122.0 1.7 116 35-218 10-128 (212)
133 3th5_A RAS-related C3 botulinu 99.0 2.7E-13 9.2E-18 123.0 0.0 70 136-218 78-149 (204)
134 1mky_A Probable GTP-binding pr 99.3 1.3E-11 4.6E-16 125.5 12.2 129 33-219 179-308 (439)
135 3q3j_B RHO-related GTP-binding 99.3 1.1E-12 3.9E-17 120.1 3.9 118 33-218 26-146 (214)
136 3bwd_D RAC-like GTP-binding pr 99.3 3E-13 1E-17 119.8 -0.1 69 136-218 56-127 (182)
137 4gzl_A RAS-related C3 botulinu 99.3 9E-13 3.1E-17 119.7 2.2 69 137-219 79-150 (204)
138 2iwr_A Centaurin gamma 1; ANK 99.3 1.2E-11 4.2E-16 109.1 9.3 108 35-216 8-121 (178)
139 1m7b_A RND3/RHOE small GTP-bin 99.3 2.9E-12 9.8E-17 114.2 5.2 115 35-217 8-125 (184)
140 3gj0_A GTP-binding nuclear pro 99.3 1.3E-12 4.6E-17 119.9 3.0 107 136-258 64-172 (221)
141 3o47_A ADP-ribosylation factor 99.2 1.4E-11 4.8E-16 120.5 9.8 113 36-219 167-282 (329)
142 3r7w_A Gtpase1, GTP-binding pr 99.2 1.3E-11 4.4E-16 119.6 8.9 75 135-217 51-129 (307)
143 4a9a_A Ribosome-interacting GT 99.2 1.1E-11 3.9E-16 122.4 8.5 122 33-216 71-195 (376)
144 1nrj_B SR-beta, signal recogni 99.2 3.2E-11 1.1E-15 110.2 11.0 114 33-219 11-136 (218)
145 1gwn_A RHO-related GTP-binding 99.2 3.6E-12 1.2E-16 116.0 4.5 115 35-217 29-146 (205)
146 1wxq_A GTP-binding protein; st 99.2 1.9E-12 6.6E-17 129.5 2.9 38 36-73 2-39 (397)
147 3ihw_A Centg3; RAS, centaurin, 99.2 1.3E-11 4.6E-16 110.1 7.6 98 137-253 68-172 (184)
148 3lvq_E ARF-GAP with SH3 domain 99.2 5.1E-11 1.7E-15 123.1 11.5 113 35-218 323-438 (497)
149 3izy_P Translation initiation 99.2 3.5E-12 1.2E-16 131.7 1.6 117 33-218 3-119 (537)
150 2g3y_A GTP-binding protein GEM 99.2 2.5E-11 8.6E-16 111.0 6.9 69 137-217 88-159 (211)
151 3izq_1 HBS1P, elongation facto 99.2 4E-11 1.4E-15 126.4 9.0 148 33-217 166-319 (611)
152 3dpu_A RAB family protein; roc 99.2 9.6E-11 3.3E-15 122.2 11.7 108 136-258 98-205 (535)
153 3p26_A Elongation factor 1 alp 99.2 3.2E-11 1.1E-15 124.1 7.5 71 135-218 110-186 (483)
154 3sjy_A Translation initiation 99.1 8.4E-11 2.9E-15 118.2 9.8 68 136-218 75-144 (403)
155 2wkq_A NPH1-1, RAS-related C3 99.1 3.3E-11 1.1E-15 117.4 6.6 118 33-218 154-274 (332)
156 3j2k_7 ERF3, eukaryotic polype 99.1 6.6E-11 2.3E-15 120.2 9.0 70 135-217 94-169 (439)
157 3tr5_A RF-3, peptide chain rel 99.1 1.8E-10 6.1E-15 119.4 10.9 138 33-218 12-149 (528)
158 1wb1_A Translation elongation 99.1 4.7E-11 1.6E-15 122.7 6.1 67 136-217 73-139 (482)
159 2cjw_A GTP-binding protein GEM 99.1 7E-11 2.4E-15 106.2 6.3 69 137-217 57-128 (192)
160 2f9l_A RAB11B, member RAS onco 99.1 1.2E-10 4.1E-15 105.0 6.9 118 34-217 5-124 (199)
161 2zej_A Dardarin, leucine-rich 99.1 3E-11 1E-15 107.6 2.5 68 136-217 56-126 (184)
162 2qag_A Septin-2, protein NEDD5 99.1 1.2E-10 4.3E-15 115.1 6.6 108 137-247 96-220 (361)
163 2ywe_A GTP-binding protein LEP 99.1 2E-10 7E-15 120.1 8.2 134 33-218 5-140 (600)
164 3cb4_D GTP-binding protein LEP 99.0 2.1E-10 7.3E-15 120.1 7.4 134 33-218 3-138 (599)
165 2www_A Methylmalonic aciduria 99.0 6E-10 2E-14 109.7 9.9 25 33-57 73-97 (349)
166 1zun_B Sulfate adenylate trans 99.0 8.3E-10 2.8E-14 112.0 10.9 68 135-218 103-172 (434)
167 3p32_A Probable GTPase RV1496/ 99.0 1.3E-09 4.3E-14 107.7 11.9 103 135-259 171-282 (355)
168 2elf_A Protein translation elo 99.0 5.2E-10 1.8E-14 110.9 8.8 64 136-215 60-125 (370)
169 2h5e_A Peptide chain release f 99.0 1.1E-09 3.7E-14 113.6 11.3 69 135-218 81-149 (529)
170 1kk1_A EIF2gamma; initiation o 99.0 9.3E-10 3.2E-14 110.8 10.5 68 136-218 83-152 (410)
171 1zo1_I IF2, translation initia 99.0 8.4E-11 2.9E-15 120.5 2.7 115 33-217 3-117 (501)
172 1s0u_A EIF-2-gamma, translatio 99.0 2E-09 6.9E-14 108.3 12.1 69 136-219 81-151 (408)
173 1f60_A Elongation factor EEF1A 99.0 2.1E-10 7.2E-15 117.1 4.9 143 34-217 7-159 (458)
174 1oix_A RAS-related protein RAB 99.0 8.9E-10 3E-14 98.7 8.4 117 34-217 29-148 (191)
175 2c78_A Elongation factor TU-A; 98.9 2.6E-09 9E-14 107.3 11.1 68 135-217 74-142 (405)
176 1pui_A ENGB, probable GTP-bind 98.9 1.5E-09 5E-14 98.4 8.4 78 137-219 73-153 (210)
177 1g7s_A Translation initiation 98.9 6.8E-10 2.3E-14 116.4 6.1 67 136-217 70-136 (594)
178 2xex_A Elongation factor G; GT 98.9 1.2E-09 4.1E-14 117.0 7.5 69 135-218 74-142 (693)
179 1jny_A EF-1-alpha, elongation 98.9 2.8E-09 9.6E-14 108.1 8.3 71 135-218 83-159 (435)
180 3ec1_A YQEH GTPase; atnos1, at 98.9 7.6E-10 2.6E-14 109.8 3.7 75 137-219 213-290 (369)
181 2rdo_7 EF-G, elongation factor 98.9 1.5E-08 5E-13 108.7 13.5 68 136-218 82-149 (704)
182 1jal_A YCHF protein; nucleotid 98.9 3.5E-09 1.2E-13 104.0 7.9 37 35-71 3-39 (363)
183 1dar_A EF-G, elongation factor 98.8 3.8E-09 1.3E-13 113.1 8.4 69 135-218 76-144 (691)
184 3mca_A HBS1, elongation factor 98.8 1.9E-10 6.3E-15 121.0 -2.1 66 136-217 255-329 (592)
185 1udx_A The GTP-binding protein 98.8 6.6E-09 2.3E-13 104.2 9.0 124 34-218 157-284 (416)
186 1n0u_A EF-2, elongation factor 98.8 3.8E-09 1.3E-13 115.4 7.2 66 136-216 98-163 (842)
187 1d2e_A Elongation factor TU (E 98.8 5.8E-09 2E-13 104.5 7.9 68 135-217 65-133 (397)
188 2qag_C Septin-7; cell cycle, c 98.8 2E-08 6.9E-13 100.7 11.6 81 136-218 88-182 (418)
189 2qag_B Septin-6, protein NEDD5 98.8 1.4E-08 4.9E-13 101.5 9.2 82 136-219 95-192 (427)
190 3c5h_A Glucocorticoid receptor 98.7 2.9E-09 9.8E-14 100.2 3.2 25 33-57 18-51 (255)
191 3r7w_B Gtpase2, GTP-binding pr 98.7 4.4E-08 1.5E-12 94.6 11.4 72 135-218 45-121 (331)
192 3h2y_A GTPase family protein; 98.7 4E-09 1.4E-13 104.5 4.1 76 137-219 212-289 (368)
193 2qnr_A Septin-2, protein NEDD5 98.7 1.1E-08 3.9E-13 98.5 6.9 121 136-259 76-212 (301)
194 2p67_A LAO/AO transport system 98.7 4.1E-08 1.4E-12 96.3 10.2 25 33-57 55-79 (341)
195 1r5b_A Eukaryotic peptide chai 98.7 8.7E-09 3E-13 105.4 5.3 67 135-217 120-195 (467)
196 2ohf_A Protein OLA1, GTP-bindi 98.7 2.1E-08 7.2E-13 99.5 7.0 107 33-183 21-127 (396)
197 3vqt_A RF-3, peptide chain rel 98.7 2.1E-08 7.1E-13 104.4 6.9 82 119-218 86-167 (548)
198 2qm8_A GTPase/ATPase; G protei 98.7 3.3E-07 1.1E-11 89.6 14.9 25 33-57 54-78 (337)
199 2dy1_A Elongation factor G; tr 98.6 1.1E-07 3.9E-12 101.2 10.9 132 33-216 8-139 (665)
200 3sop_A Neuronal-specific septi 98.6 1.1E-07 3.7E-12 90.1 9.5 82 136-219 60-156 (270)
201 2dby_A GTP-binding protein; GD 98.6 7.6E-08 2.6E-12 95.0 8.7 110 35-184 2-111 (368)
202 3avx_A Elongation factor TS, e 98.6 2.6E-08 8.9E-13 109.7 5.6 67 135-217 358-426 (1289)
203 2j37_W Signal recognition part 98.5 1.7E-07 5.8E-12 96.1 9.4 77 136-224 184-261 (504)
204 4fn5_A EF-G 1, elongation fact 98.5 7.3E-08 2.5E-12 103.6 6.4 137 33-218 12-152 (709)
205 1yrb_A ATP(GTP)binding protein 98.5 3.1E-07 1.1E-11 86.1 9.1 28 33-60 13-45 (262)
206 3dm5_A SRP54, signal recogniti 98.5 1.7E-06 5.9E-11 86.9 15.0 81 136-227 183-263 (443)
207 3j25_A Tetracycline resistance 98.4 5.4E-08 1.9E-12 103.2 2.8 69 135-218 66-134 (638)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 4.6E-07 1.6E-11 90.0 8.2 106 34-183 20-126 (392)
209 1tq4_A IIGP1, interferon-induc 98.4 1.9E-06 6.6E-11 86.1 12.3 121 33-216 68-188 (413)
210 1puj_A YLQF, conserved hypothe 98.3 6.9E-07 2.4E-11 85.0 7.5 30 34-63 120-149 (282)
211 1f5n_A Interferon-induced guan 98.3 2.2E-06 7.6E-11 89.2 11.5 27 33-59 37-63 (592)
212 3kl4_A SRP54, signal recogniti 98.2 9.8E-06 3.4E-10 81.4 13.5 83 135-226 179-261 (433)
213 2v3c_C SRP54, signal recogniti 98.2 3.9E-06 1.3E-10 84.5 9.5 79 135-225 180-260 (432)
214 2wsm_A Hydrogenase expression/ 98.1 8E-07 2.7E-11 80.9 3.1 25 33-57 29-53 (221)
215 3cnl_A YLQF, putative uncharac 98.1 2.3E-06 8E-11 80.4 5.1 25 35-59 100-124 (262)
216 3q5d_A Atlastin-1; G protein, 97.9 2.8E-05 9.5E-10 78.3 8.5 24 34-57 67-90 (447)
217 2hf9_A Probable hydrogenase ni 97.9 6.1E-06 2.1E-10 75.3 3.4 26 33-58 37-62 (226)
218 1j8m_F SRP54, signal recogniti 97.9 8.5E-05 2.9E-09 71.0 11.3 82 135-225 180-261 (297)
219 2xxa_A Signal recognition part 97.8 2.3E-05 7.9E-10 78.9 7.1 78 136-225 184-262 (433)
220 1rj9_A FTSY, signal recognitio 97.8 7.5E-05 2.6E-09 71.6 10.1 85 137-226 186-270 (304)
221 3e70_C DPA, signal recognition 97.8 0.00015 5.3E-09 70.2 11.8 80 136-226 212-291 (328)
222 2yhs_A FTSY, cell division pro 97.7 0.0002 6.8E-09 72.7 11.6 83 136-227 376-462 (503)
223 1vma_A Cell division protein F 97.6 0.00015 5.3E-09 69.4 8.5 83 135-227 186-273 (306)
224 2px0_A Flagellar biosynthesis 97.5 0.00075 2.6E-08 64.4 12.2 80 135-227 182-263 (296)
225 1zu4_A FTSY; GTPase, signal re 97.5 0.0012 4E-08 63.7 13.6 83 135-227 191-278 (320)
226 2ffh_A Protein (FFH); SRP54, s 97.4 0.00018 6.1E-09 72.1 6.4 79 136-225 181-259 (425)
227 2og2_A Putative signal recogni 97.3 0.00051 1.8E-08 67.2 8.7 85 137-226 242-326 (359)
228 3b9q_A Chloroplast SRP recepto 97.2 0.00052 1.8E-08 65.7 7.3 86 137-227 185-270 (302)
229 1ls1_A Signal recognition part 97.0 0.0016 5.3E-08 62.1 8.3 80 136-226 181-260 (295)
230 1t9h_A YLOQ, probable GTPase E 96.8 0.00046 1.6E-08 66.1 2.7 24 35-58 174-197 (307)
231 1u0l_A Probable GTPase ENGC; p 96.5 0.00054 1.8E-08 65.5 0.9 97 137-250 64-162 (301)
232 2yv5_A YJEQ protein; hydrolase 96.4 0.0068 2.3E-07 57.8 7.9 21 36-57 167-187 (302)
233 4dzz_A Plasmid partitioning pr 96.2 0.0099 3.4E-07 52.6 7.3 67 135-216 75-143 (206)
234 1zcb_A G alpha I/13; GTP-bindi 96.0 0.0047 1.6E-07 60.5 4.6 69 135-216 200-281 (362)
235 4ido_A Atlastin-1; GTPase, GTP 95.8 0.083 2.8E-06 52.9 12.7 22 34-55 67-88 (457)
236 3ney_A 55 kDa erythrocyte memb 95.7 0.0042 1.4E-07 55.3 2.4 23 35-57 20-42 (197)
237 1u0l_A Probable GTPase ENGC; p 95.6 0.012 4.1E-07 56.1 5.3 23 36-58 171-193 (301)
238 1cip_A Protein (guanine nucleo 95.5 0.0054 1.9E-07 59.9 2.8 69 135-216 192-273 (353)
239 1ex7_A Guanylate kinase; subst 95.4 0.0058 2E-07 53.9 2.3 35 37-71 4-40 (186)
240 2rcn_A Probable GTPase ENGC; Y 95.4 0.01 3.4E-07 57.9 4.0 23 36-58 217-239 (358)
241 1kgd_A CASK, peripheral plasma 95.3 0.0073 2.5E-07 52.7 2.4 22 36-57 7-28 (180)
242 1lvg_A Guanylate kinase, GMP k 95.2 0.0076 2.6E-07 53.6 2.4 22 36-57 6-27 (198)
243 2yv5_A YJEQ protein; hydrolase 95.2 0.0047 1.6E-07 59.0 1.1 54 165-218 72-125 (302)
244 1ye8_A Protein THEP1, hypothet 95.2 0.0084 2.9E-07 52.5 2.6 22 36-57 2-23 (178)
245 4g1u_C Hemin import ATP-bindin 95.1 0.012 4E-07 55.1 3.6 22 36-57 39-60 (266)
246 4fid_A G protein alpha subunit 95.1 0.022 7.4E-07 55.1 5.4 71 134-217 159-242 (340)
247 1mv5_A LMRA, multidrug resista 95.1 0.013 4.5E-07 53.9 3.7 23 36-58 30-52 (243)
248 1znw_A Guanylate kinase, GMP k 95.1 0.0086 2.9E-07 53.5 2.3 22 36-57 22-43 (207)
249 3tau_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 52.6 3.2 23 35-57 9-31 (208)
250 1g6h_A High-affinity branched- 95.0 0.011 3.8E-07 54.9 3.0 23 36-58 35-57 (257)
251 3gfo_A Cobalt import ATP-bindi 95.0 0.012 4E-07 55.3 3.1 22 36-57 36-57 (275)
252 1zp6_A Hypothetical protein AT 94.9 0.012 4.1E-07 51.5 2.9 22 36-57 11-32 (191)
253 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.011 3.8E-07 57.1 2.8 22 36-57 173-194 (330)
254 3tif_A Uncharacterized ABC tra 94.9 0.013 4.5E-07 53.7 3.0 23 36-58 33-55 (235)
255 2gza_A Type IV secretion syste 94.8 0.013 4.4E-07 57.4 3.1 29 36-66 177-205 (361)
256 3tr0_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 52.3 2.4 22 36-57 9-30 (205)
257 3c8u_A Fructokinase; YP_612366 94.8 0.01 3.5E-07 53.1 2.1 23 35-57 23-45 (208)
258 1s96_A Guanylate kinase, GMP k 94.8 0.011 3.9E-07 53.4 2.4 22 36-57 18-39 (219)
259 1np6_A Molybdopterin-guanine d 94.7 0.015 5E-07 50.7 2.8 25 33-57 5-29 (174)
260 2pcj_A ABC transporter, lipopr 94.7 0.014 4.7E-07 53.1 2.7 23 36-58 32-54 (224)
261 3a00_A Guanylate kinase, GMP k 94.7 0.013 4.3E-07 51.5 2.3 22 36-57 3-24 (186)
262 2d2e_A SUFC protein; ABC-ATPas 94.7 0.015 5E-07 53.9 2.8 22 36-57 31-52 (250)
263 1z6g_A Guanylate kinase; struc 94.7 0.013 4.3E-07 53.0 2.3 22 36-57 25-46 (218)
264 2oap_1 GSPE-2, type II secreti 94.7 0.014 4.6E-07 60.0 2.8 31 36-68 262-292 (511)
265 1sgw_A Putative ABC transporte 94.7 0.017 5.7E-07 52.2 3.1 22 36-57 37-58 (214)
266 2onk_A Molybdate/tungstate ABC 94.6 0.018 6E-07 53.0 3.1 24 35-58 25-48 (240)
267 2cbz_A Multidrug resistance-as 94.6 0.017 6E-07 52.9 3.0 23 36-58 33-55 (237)
268 3ohm_A Guanine nucleotide-bind 94.5 0.02 6.8E-07 55.1 3.4 70 135-217 166-248 (327)
269 2pze_A Cystic fibrosis transme 94.5 0.019 6.5E-07 52.3 3.1 22 36-57 36-57 (229)
270 1b0u_A Histidine permease; ABC 94.5 0.019 6.5E-07 53.5 3.1 23 36-58 34-56 (262)
271 1azs_C GS-alpha; complex (lyas 94.4 0.026 8.9E-07 55.9 4.2 69 135-216 216-297 (402)
272 4gp7_A Metallophosphoesterase; 94.4 0.021 7.1E-07 49.4 3.0 21 36-56 11-31 (171)
273 2qi9_C Vitamin B12 import ATP- 94.4 0.02 7E-07 52.9 3.1 23 36-58 28-50 (249)
274 2ff7_A Alpha-hemolysin translo 94.4 0.02 6.9E-07 52.8 3.0 23 36-58 37-59 (247)
275 2zu0_C Probable ATP-dependent 94.4 0.019 6.4E-07 53.7 2.9 22 36-57 48-69 (267)
276 1htw_A HI0065; nucleotide-bind 94.4 0.017 5.9E-07 49.4 2.3 22 36-57 35-56 (158)
277 1ji0_A ABC transporter; ATP bi 94.3 0.021 7.3E-07 52.4 3.0 23 36-58 34-56 (240)
278 1vpl_A ABC transporter, ATP-bi 94.3 0.022 7.4E-07 52.9 3.1 23 36-58 43-65 (256)
279 2olj_A Amino acid ABC transpor 94.3 0.022 7.5E-07 53.1 3.1 23 36-58 52-74 (263)
280 1puj_A YLQF, conserved hypothe 94.3 0.052 1.8E-06 51.1 5.7 86 163-256 14-101 (282)
281 2ghi_A Transport protein; mult 94.2 0.023 7.8E-07 52.9 3.0 23 36-58 48-70 (260)
282 2eyu_A Twitching motility prot 94.2 0.019 6.4E-07 53.5 2.4 22 36-57 27-48 (261)
283 2nq2_C Hypothetical ABC transp 94.2 0.024 8.1E-07 52.6 3.0 31 36-68 33-63 (253)
284 2xtz_A Guanine nucleotide-bind 94.2 0.019 6.6E-07 55.9 2.5 70 135-217 182-264 (354)
285 2ixe_A Antigen peptide transpo 94.1 0.024 8.3E-07 53.0 3.0 23 36-58 47-69 (271)
286 1kag_A SKI, shikimate kinase I 94.1 0.021 7.3E-07 49.0 2.4 23 35-57 5-27 (173)
287 2yz2_A Putative ABC transporte 94.1 0.025 8.6E-07 52.8 3.0 23 36-58 35-57 (266)
288 3asz_A Uridine kinase; cytidin 94.1 0.018 6.2E-07 51.3 2.0 22 36-57 8-29 (211)
289 2ihy_A ABC transporter, ATP-bi 94.0 0.026 9E-07 53.1 3.1 23 36-58 49-71 (279)
290 2j41_A Guanylate kinase; GMP, 94.0 0.023 7.8E-07 50.3 2.5 22 36-57 8-29 (207)
291 3l82_B F-box only protein 4; T 93.9 0.057 2E-06 48.3 4.9 94 160-255 113-217 (227)
292 2f1r_A Molybdopterin-guanine d 93.9 0.012 4.1E-07 51.1 0.5 23 35-57 3-25 (171)
293 2v9p_A Replication protein E1; 93.9 0.023 7.9E-07 54.1 2.5 22 36-57 128-149 (305)
294 3b85_A Phosphate starvation-in 93.9 0.019 6.5E-07 51.5 1.8 29 36-67 24-52 (208)
295 2bdt_A BH3686; alpha-beta prot 93.8 0.025 8.7E-07 49.4 2.3 21 36-56 4-24 (189)
296 4eun_A Thermoresistant glucoki 93.7 0.026 8.9E-07 50.0 2.4 23 35-57 30-52 (200)
297 2bbw_A Adenylate kinase 4, AK4 93.7 0.033 1.1E-06 51.0 3.1 24 35-58 28-54 (246)
298 2pjz_A Hypothetical protein ST 93.7 0.036 1.2E-06 51.6 3.4 25 36-62 32-56 (263)
299 3nh6_A ATP-binding cassette SU 93.6 0.025 8.6E-07 53.9 2.1 23 36-58 82-104 (306)
300 3lw7_A Adenylate kinase relate 93.5 0.042 1.4E-06 46.8 3.2 20 35-54 2-21 (179)
301 3jvv_A Twitching mobility prot 93.5 0.028 9.7E-07 54.8 2.3 22 36-57 125-146 (356)
302 2i3b_A HCR-ntpase, human cance 93.4 0.032 1.1E-06 49.2 2.4 22 36-57 3-24 (189)
303 3aez_A Pantothenate kinase; tr 93.4 0.03 1E-06 53.6 2.4 22 36-57 92-113 (312)
304 1knq_A Gluconate kinase; ALFA/ 93.4 0.032 1.1E-06 48.0 2.3 23 35-57 9-31 (175)
305 1t9h_A YLOQ, probable GTPase E 93.4 0.03 1E-06 53.4 2.3 54 166-219 80-133 (307)
306 1odf_A YGR205W, hypothetical 3 93.4 0.084 2.9E-06 49.9 5.4 23 35-57 32-54 (290)
307 2qor_A Guanylate kinase; phosp 93.4 0.04 1.4E-06 48.9 3.0 24 34-57 12-35 (204)
308 1xjc_A MOBB protein homolog; s 93.3 0.051 1.7E-06 47.0 3.4 25 33-57 3-27 (169)
309 2bbs_A Cystic fibrosis transme 93.3 0.036 1.2E-06 52.4 2.7 23 36-58 66-88 (290)
310 3kb2_A SPBC2 prophage-derived 93.3 0.046 1.6E-06 46.6 3.2 22 35-56 2-23 (173)
311 3lnc_A Guanylate kinase, GMP k 93.3 0.027 9.1E-07 51.1 1.7 22 36-57 29-51 (231)
312 3h2y_A GTPase family protein; 93.3 0.045 1.5E-06 53.6 3.4 56 160-219 57-112 (368)
313 3kta_A Chromosome segregation 93.3 0.031 1.1E-06 48.4 2.0 23 35-57 27-49 (182)
314 3ec2_A DNA replication protein 93.2 0.06 2E-06 46.6 3.8 23 35-57 39-61 (180)
315 4a74_A DNA repair and recombin 93.2 0.049 1.7E-06 48.9 3.3 30 36-65 27-56 (231)
316 1cke_A CK, MSSA, protein (cyti 93.0 0.045 1.5E-06 49.2 2.7 23 35-57 6-28 (227)
317 3uie_A Adenylyl-sulfate kinase 92.9 0.041 1.4E-06 48.6 2.3 23 35-57 26-48 (200)
318 3tui_C Methionine import ATP-b 92.9 0.051 1.7E-06 53.1 3.1 23 36-58 56-78 (366)
319 1z47_A CYSA, putative ABC-tran 92.9 0.051 1.7E-06 52.9 3.0 23 36-58 43-65 (355)
320 1p9r_A General secretion pathw 92.8 0.042 1.4E-06 54.8 2.3 22 36-57 169-190 (418)
321 2jeo_A Uridine-cytidine kinase 92.7 0.044 1.5E-06 50.2 2.3 22 36-57 27-48 (245)
322 2yyz_A Sugar ABC transporter, 92.7 0.055 1.9E-06 52.7 3.0 23 36-58 31-53 (359)
323 2it1_A 362AA long hypothetical 92.7 0.056 1.9E-06 52.7 3.1 23 36-58 31-53 (362)
324 3fvq_A Fe(3+) IONS import ATP- 92.7 0.05 1.7E-06 53.0 2.7 23 36-58 32-54 (359)
325 1lw7_A Transcriptional regulat 92.6 0.041 1.4E-06 53.8 2.1 22 36-57 172-193 (365)
326 3rlf_A Maltose/maltodextrin im 92.6 0.058 2E-06 53.0 3.1 23 36-58 31-53 (381)
327 1nij_A Hypothetical protein YJ 92.6 0.031 1.1E-06 53.6 1.1 26 33-58 3-28 (318)
328 4e22_A Cytidylate kinase; P-lo 92.6 0.048 1.6E-06 50.3 2.4 25 35-59 28-55 (252)
329 2ewv_A Twitching motility prot 92.6 0.045 1.5E-06 53.7 2.3 22 36-57 138-159 (372)
330 4b4t_L 26S protease subunit RP 92.6 0.56 1.9E-05 46.8 10.3 25 33-57 213-238 (437)
331 1jjv_A Dephospho-COA kinase; P 92.6 0.062 2.1E-06 47.6 3.0 21 36-56 4-24 (206)
332 1ly1_A Polynucleotide kinase; 92.6 0.063 2.2E-06 46.1 3.0 21 36-56 4-24 (181)
333 1g29_1 MALK, maltose transport 92.6 0.059 2E-06 52.8 3.0 23 36-58 31-53 (372)
334 2qt1_A Nicotinamide riboside k 92.5 0.059 2E-06 47.8 2.8 22 36-57 23-44 (207)
335 3t61_A Gluconokinase; PSI-biol 92.5 0.051 1.7E-06 48.0 2.3 22 35-56 19-40 (202)
336 2if2_A Dephospho-COA kinase; a 92.5 0.049 1.7E-06 48.1 2.2 21 36-56 3-23 (204)
337 1v43_A Sugar-binding transport 92.5 0.063 2.1E-06 52.6 3.1 23 36-58 39-61 (372)
338 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.063 2.2E-06 45.3 2.7 21 35-55 24-44 (149)
339 2kjq_A DNAA-related protein; s 92.4 0.04 1.4E-06 46.5 1.5 24 34-57 36-59 (149)
340 2jaq_A Deoxyguanosine kinase; 92.4 0.073 2.5E-06 46.7 3.3 21 36-56 2-22 (205)
341 2vp4_A Deoxynucleoside kinase; 92.3 0.057 2E-06 49.0 2.4 22 36-57 22-43 (230)
342 1sq5_A Pantothenate kinase; P- 92.2 0.05 1.7E-06 51.9 2.0 22 36-57 82-103 (308)
343 1qhx_A CPT, protein (chloramph 92.1 0.079 2.7E-06 45.5 3.0 22 36-57 5-26 (178)
344 3d31_A Sulfate/molybdate ABC t 92.1 0.052 1.8E-06 52.7 2.0 23 36-58 28-50 (348)
345 1rz3_A Hypothetical protein rb 92.1 0.056 1.9E-06 47.9 2.0 22 36-57 24-45 (201)
346 2ehv_A Hypothetical protein PH 92.0 0.064 2.2E-06 48.8 2.4 21 36-56 32-52 (251)
347 3ec1_A YQEH GTPase; atnos1, at 91.9 0.059 2E-06 52.8 2.1 54 162-219 61-114 (369)
348 1nks_A Adenylate kinase; therm 91.8 0.077 2.6E-06 46.0 2.6 21 36-56 3-23 (194)
349 1kht_A Adenylate kinase; phosp 91.8 0.088 3E-06 45.6 3.0 21 36-56 5-25 (192)
350 3gd7_A Fusion complex of cysti 91.7 0.077 2.6E-06 52.3 2.7 22 36-57 49-70 (390)
351 3vaa_A Shikimate kinase, SK; s 91.6 0.1 3.5E-06 46.0 3.3 22 35-56 26-47 (199)
352 3trf_A Shikimate kinase, SK; a 91.6 0.1 3.6E-06 45.1 3.2 22 34-55 5-26 (185)
353 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.065 2.2E-06 54.1 2.1 26 33-58 137-162 (460)
354 2iyv_A Shikimate kinase, SK; t 91.6 0.097 3.3E-06 45.3 3.0 21 35-55 3-23 (184)
355 1y63_A LMAJ004144AAA protein; 91.5 0.11 3.8E-06 45.2 3.2 24 34-57 10-33 (184)
356 1oxx_K GLCV, glucose, ABC tran 91.5 0.052 1.8E-06 52.8 1.2 23 36-58 33-55 (353)
357 3tqc_A Pantothenate kinase; bi 91.4 0.078 2.7E-06 50.8 2.4 22 36-57 94-115 (321)
358 1via_A Shikimate kinase; struc 91.4 0.11 3.7E-06 44.7 3.1 22 35-56 5-26 (175)
359 3cm0_A Adenylate kinase; ATP-b 91.3 0.1 3.6E-06 45.1 3.0 20 36-55 6-25 (186)
360 3qf7_A RAD50; ABC-ATPase, ATPa 91.3 0.097 3.3E-06 51.1 3.0 22 34-55 23-44 (365)
361 2rhm_A Putative kinase; P-loop 91.2 0.093 3.2E-06 45.6 2.5 21 36-56 7-27 (193)
362 4b4t_K 26S protease regulatory 91.2 0.64 2.2E-05 46.2 8.8 25 33-57 204-229 (428)
363 2plr_A DTMP kinase, probable t 91.2 0.11 3.7E-06 45.9 3.0 21 36-56 6-26 (213)
364 2ga8_A Hypothetical 39.9 kDa p 91.1 0.23 7.7E-06 48.2 5.3 47 1-57 1-47 (359)
365 3iij_A Coilin-interacting nucl 91.1 0.12 4.1E-06 44.6 3.1 23 33-55 10-32 (180)
366 3fb4_A Adenylate kinase; psych 91.0 0.12 4.1E-06 46.0 3.1 20 36-55 2-21 (216)
367 2v54_A DTMP kinase, thymidylat 91.0 0.12 3.9E-06 45.5 3.0 23 35-57 5-27 (204)
368 3b5x_A Lipid A export ATP-bind 91.0 0.12 4E-06 53.9 3.4 23 36-58 371-393 (582)
369 2pez_A Bifunctional 3'-phospho 90.9 0.1 3.5E-06 45.0 2.4 22 36-57 7-28 (179)
370 2wwf_A Thymidilate kinase, put 90.9 0.16 5.6E-06 44.8 3.8 22 35-56 11-32 (212)
371 1yqt_A RNAse L inhibitor; ATP- 90.8 0.16 5.5E-06 52.3 4.2 31 36-68 314-344 (538)
372 2z0h_A DTMP kinase, thymidylat 90.8 0.12 4.3E-06 44.9 2.9 21 36-56 2-22 (197)
373 3ozx_A RNAse L inhibitor; ATP 90.8 0.14 4.8E-06 52.7 3.7 30 36-67 296-325 (538)
374 2x8a_A Nuclear valosin-contain 90.7 0.1 3.4E-06 48.8 2.3 21 37-57 47-67 (274)
375 1e6c_A Shikimate kinase; phosp 90.7 0.14 4.8E-06 43.6 3.1 22 35-56 3-24 (173)
376 3dl0_A Adenylate kinase; phosp 90.7 0.13 4.6E-06 45.7 3.1 21 36-56 2-22 (216)
377 1yqt_A RNAse L inhibitor; ATP- 90.7 0.13 4.4E-06 53.1 3.3 23 36-58 49-71 (538)
378 1ixz_A ATP-dependent metallopr 90.6 0.11 3.6E-06 47.7 2.4 22 36-57 51-72 (254)
379 2c95_A Adenylate kinase 1; tra 90.5 0.13 4.6E-06 44.7 2.9 23 34-56 9-31 (196)
380 3bk7_A ABC transporter ATP-bin 90.5 0.17 5.7E-06 53.0 4.0 31 36-68 384-414 (607)
381 2pbr_A DTMP kinase, thymidylat 90.4 0.14 4.7E-06 44.5 2.9 21 36-56 2-22 (195)
382 2yvu_A Probable adenylyl-sulfa 90.4 0.15 5E-06 44.3 3.0 23 35-57 14-36 (186)
383 1tev_A UMP-CMP kinase; ploop, 90.4 0.14 5E-06 44.3 3.0 21 36-56 5-25 (196)
384 2pt5_A Shikimate kinase, SK; a 90.3 0.16 5.5E-06 43.0 3.1 21 36-56 2-22 (168)
385 2w0m_A SSO2452; RECA, SSPF, un 90.3 0.12 4E-06 46.3 2.3 22 36-57 25-46 (235)
386 1jbk_A CLPB protein; beta barr 90.2 0.36 1.2E-05 41.2 5.4 23 35-57 44-66 (195)
387 4b4t_M 26S protease regulatory 90.2 0.95 3.2E-05 45.1 9.1 25 33-57 213-238 (434)
388 1tue_A Replication protein E1; 90.2 0.3 1E-05 43.5 4.9 21 36-56 60-80 (212)
389 3ozx_A RNAse L inhibitor; ATP 90.2 0.14 4.8E-06 52.8 3.1 23 36-58 27-49 (538)
390 1lv7_A FTSH; alpha/beta domain 90.1 0.25 8.5E-06 45.3 4.5 22 36-57 47-68 (257)
391 1gtv_A TMK, thymidylate kinase 90.1 0.063 2.2E-06 47.7 0.3 22 36-57 2-23 (214)
392 3euj_A Chromosome partition pr 90.0 0.12 4.1E-06 52.3 2.4 23 35-57 30-52 (483)
393 1nn5_A Similar to deoxythymidy 90.0 0.14 4.7E-06 45.4 2.5 22 35-56 10-31 (215)
394 4b4t_J 26S protease regulatory 90.0 0.9 3.1E-05 44.7 8.5 25 33-57 180-205 (405)
395 3qks_A DNA double-strand break 89.9 0.15 5.2E-06 45.2 2.7 21 35-55 24-44 (203)
396 3j16_B RLI1P; ribosome recycli 89.9 0.15 5.2E-06 53.3 3.1 23 36-58 105-127 (608)
397 2bwj_A Adenylate kinase 5; pho 89.9 0.17 5.6E-06 44.2 2.9 22 35-56 13-34 (199)
398 4a82_A Cystic fibrosis transme 89.8 0.13 4.6E-06 53.4 2.6 23 36-58 369-391 (578)
399 3bk7_A ABC transporter ATP-bin 89.8 0.17 5.7E-06 53.0 3.3 23 36-58 119-141 (607)
400 3b60_A Lipid A export ATP-bind 89.7 0.15 5.2E-06 53.1 2.9 23 36-58 371-393 (582)
401 1cr0_A DNA primase/helicase; R 89.7 0.12 4.1E-06 48.6 2.0 22 36-57 37-58 (296)
402 1in4_A RUVB, holliday junction 89.6 0.16 5.4E-06 48.8 2.8 24 34-57 51-74 (334)
403 3a4m_A L-seryl-tRNA(SEC) kinas 89.6 0.18 6.1E-06 46.6 3.1 23 34-56 4-26 (260)
404 3qf4_A ABC transporter, ATP-bi 89.6 0.15 5.1E-06 53.2 2.8 22 36-57 371-392 (587)
405 2cdn_A Adenylate kinase; phosp 89.5 0.19 6.3E-06 44.2 3.0 21 36-56 22-42 (201)
406 3nwj_A ATSK2; P loop, shikimat 89.5 0.15 5.2E-06 46.9 2.5 23 34-56 48-70 (250)
407 3qf4_B Uncharacterized ABC tra 89.5 0.15 5E-06 53.4 2.6 23 36-58 383-405 (598)
408 1iy2_A ATP-dependent metallopr 89.5 0.15 5E-06 47.6 2.4 22 36-57 75-96 (278)
409 1zd8_A GTP:AMP phosphotransfer 89.4 0.18 6.2E-06 45.3 2.9 23 34-56 7-29 (227)
410 4b4t_I 26S protease regulatory 89.4 1.3 4.6E-05 43.8 9.3 25 33-57 214-239 (437)
411 1vht_A Dephospho-COA kinase; s 89.4 0.18 6.3E-06 44.9 2.9 21 36-56 6-26 (218)
412 2yl4_A ATP-binding cassette SU 89.4 0.14 5E-06 53.4 2.5 22 36-57 372-393 (595)
413 2vli_A Antibiotic resistance p 89.4 0.14 4.7E-06 44.1 2.0 22 35-56 6-27 (183)
414 1qf9_A UMP/CMP kinase, protein 89.2 0.17 6E-06 43.7 2.5 22 35-56 7-28 (194)
415 1e4v_A Adenylate kinase; trans 89.2 0.18 6.2E-06 44.8 2.7 21 36-56 2-22 (214)
416 3ake_A Cytidylate kinase; CMP 89.2 0.22 7.5E-06 43.8 3.2 22 35-56 3-24 (208)
417 3tlx_A Adenylate kinase 2; str 89.2 0.47 1.6E-05 43.2 5.6 22 35-56 30-51 (243)
418 1aky_A Adenylate kinase; ATP:A 89.1 0.23 7.8E-06 44.4 3.3 22 35-56 5-26 (220)
419 1gvn_B Zeta; postsegregational 89.1 0.18 6.1E-06 47.5 2.6 21 36-56 35-55 (287)
420 3k9g_A PF-32 protein; ssgcid, 89.1 2.8 9.5E-05 38.3 10.9 88 135-244 144-233 (267)
421 1ukz_A Uridylate kinase; trans 89.0 0.21 7.1E-06 43.9 2.9 22 35-56 16-37 (203)
422 1uf9_A TT1252 protein; P-loop, 88.9 0.19 6.4E-06 44.0 2.6 23 35-57 9-31 (203)
423 1svm_A Large T antigen; AAA+ f 88.9 0.16 5.6E-06 49.7 2.3 22 36-57 171-192 (377)
424 2ze6_A Isopentenyl transferase 88.8 0.22 7.5E-06 45.9 3.0 21 36-56 3-23 (253)
425 1zak_A Adenylate kinase; ATP:A 88.7 0.2 6.9E-06 44.8 2.7 22 35-56 6-27 (222)
426 1zuh_A Shikimate kinase; alpha 88.7 0.24 8.3E-06 42.0 3.0 23 33-55 6-28 (168)
427 2dhr_A FTSH; AAA+ protein, hex 88.6 0.43 1.5E-05 48.6 5.3 49 6-57 38-87 (499)
428 1qhl_A Protein (cell division 88.6 0.038 1.3E-06 50.2 -2.3 21 37-57 30-50 (227)
429 1m7g_A Adenylylsulfate kinase; 88.6 0.19 6.5E-06 44.7 2.3 22 36-57 27-48 (211)
430 3cnl_A YLQF, putative uncharac 88.5 0.23 8E-06 46.0 3.0 50 163-218 12-61 (262)
431 2xb4_A Adenylate kinase; ATP-b 88.5 0.24 8E-06 44.6 3.0 21 36-56 2-22 (223)
432 1sxj_E Activator 1 40 kDa subu 88.3 0.2 7E-06 48.1 2.6 25 33-57 35-59 (354)
433 2cvh_A DNA repair and recombin 88.3 0.2 6.9E-06 44.4 2.3 21 36-56 22-42 (220)
434 2ius_A DNA translocase FTSK; n 88.3 0.23 8E-06 50.6 3.0 24 33-56 166-189 (512)
435 3l2o_B F-box only protein 4; s 88.2 0.36 1.2E-05 45.3 4.1 93 162-256 200-303 (312)
436 3j16_B RLI1P; ribosome recycli 88.1 0.24 8.3E-06 51.7 3.1 22 37-58 381-402 (608)
437 1n0w_A DNA repair protein RAD5 88.1 0.21 7.3E-06 45.0 2.4 26 36-61 26-51 (243)
438 2obl_A ESCN; ATPase, hydrolase 88.1 0.19 6.6E-06 48.6 2.2 23 36-58 73-95 (347)
439 3qkt_A DNA double-strand break 87.9 0.24 8.1E-06 47.7 2.7 21 35-55 24-44 (339)
440 2grj_A Dephospho-COA kinase; T 87.9 0.27 9.3E-06 43.2 2.9 22 35-56 13-34 (192)
441 3thx_A DNA mismatch repair pro 87.8 1.8 6E-05 47.5 9.8 19 36-54 664-682 (934)
442 1ak2_A Adenylate kinase isoenz 87.6 0.37 1.3E-05 43.5 3.7 22 35-56 17-38 (233)
443 4eaq_A DTMP kinase, thymidylat 87.6 0.29 9.9E-06 44.3 3.0 22 36-57 28-49 (229)
444 3n70_A Transport activator; si 87.5 0.83 2.8E-05 37.8 5.6 22 36-57 26-47 (145)
445 2p5t_B PEZT; postsegregational 87.5 0.19 6.7E-06 46.1 1.7 22 36-57 34-55 (253)
446 2ph1_A Nucleotide-binding prot 87.5 1.8 6.2E-05 39.6 8.4 66 135-215 128-194 (262)
447 2dpy_A FLII, flagellum-specifi 87.3 0.22 7.6E-06 49.8 2.2 22 36-57 159-180 (438)
448 2chg_A Replication factor C sm 87.3 0.6 2.1E-05 40.8 4.9 23 34-56 38-60 (226)
449 2p65_A Hypothetical protein PF 87.2 0.56 1.9E-05 39.9 4.5 24 34-57 43-66 (187)
450 3be4_A Adenylate kinase; malar 87.2 0.31 1.1E-05 43.5 2.9 22 35-56 6-27 (217)
451 3bfv_A CAPA1, CAPB2, membrane 87.1 0.61 2.1E-05 43.3 5.0 65 136-216 192-257 (271)
452 1e69_A Chromosome segregation 87.0 0.24 8.3E-06 47.3 2.2 22 35-56 25-46 (322)
453 2o5v_A DNA replication and rep 86.8 0.27 9.2E-06 47.8 2.4 23 35-57 27-49 (359)
454 3auy_A DNA double-strand break 86.8 0.28 9.6E-06 47.9 2.5 21 35-55 26-46 (371)
455 1sxj_C Activator 1 40 kDa subu 86.8 0.3 1E-05 46.8 2.7 25 33-57 45-69 (340)
456 1w1w_A Structural maintenance 86.4 0.28 9.5E-06 48.9 2.3 24 35-58 27-50 (430)
457 1uj2_A Uridine-cytidine kinase 86.3 0.36 1.2E-05 44.1 2.9 21 36-56 24-44 (252)
458 4aby_A DNA repair protein RECN 86.3 0.097 3.3E-06 51.8 -1.1 22 36-57 62-83 (415)
459 1ltq_A Polynucleotide kinase; 86.3 0.36 1.2E-05 45.3 3.0 21 36-56 4-24 (301)
460 3co5_A Putative two-component 86.3 0.65 2.2E-05 38.4 4.2 22 36-57 29-50 (143)
461 3ea0_A ATPase, para family; al 86.1 0.86 2.9E-05 41.0 5.3 65 136-217 119-186 (245)
462 3exa_A TRNA delta(2)-isopenten 86.1 0.46 1.6E-05 45.2 3.5 23 35-57 4-26 (322)
463 3thx_B DNA mismatch repair pro 86.0 1.1 3.8E-05 49.0 6.9 22 36-57 675-696 (918)
464 3r20_A Cytidylate kinase; stru 85.9 0.46 1.6E-05 43.2 3.3 22 35-56 10-31 (233)
465 1a5t_A Delta prime, HOLB; zinc 85.8 9.3 0.00032 36.2 12.8 24 33-56 22-46 (334)
466 1q3t_A Cytidylate kinase; nucl 85.8 0.35 1.2E-05 43.7 2.5 23 34-56 16-38 (236)
467 3bos_A Putative DNA replicatio 85.8 0.44 1.5E-05 42.5 3.2 24 34-57 52-75 (242)
468 4f4c_A Multidrug resistance pr 85.7 0.26 8.9E-06 56.4 1.9 22 36-57 1107-1128(1321)
469 1nlf_A Regulatory protein REPA 85.6 0.3 1E-05 45.5 2.0 21 36-56 32-52 (279)
470 2iw3_A Elongation factor 3A; a 85.6 0.26 8.9E-06 54.1 1.7 23 36-58 701-723 (986)
471 1wb9_A DNA mismatch repair pro 85.6 1.8 6E-05 46.7 8.2 23 36-58 609-631 (800)
472 1fnn_A CDC6P, cell division co 85.6 0.39 1.3E-05 46.6 2.9 24 34-57 44-67 (389)
473 2f6r_A COA synthase, bifunctio 85.6 0.36 1.2E-05 45.1 2.5 20 36-55 77-96 (281)
474 3la6_A Tyrosine-protein kinase 85.5 1.1 3.6E-05 42.1 5.8 66 136-217 202-268 (286)
475 2iut_A DNA translocase FTSK; n 85.4 0.42 1.5E-05 49.2 3.1 24 33-56 213-236 (574)
476 3sr0_A Adenylate kinase; phosp 85.4 0.47 1.6E-05 42.2 3.1 22 36-57 2-23 (206)
477 3cwq_A Para family chromosome 85.2 0.72 2.5E-05 40.9 4.2 66 135-217 67-134 (209)
478 4f4c_A Multidrug resistance pr 85.2 0.37 1.3E-05 55.1 2.8 22 36-57 446-467 (1321)
479 3a8t_A Adenylate isopentenyltr 85.1 0.65 2.2E-05 44.6 4.0 23 35-57 41-63 (339)
480 2ce7_A Cell division protein F 85.0 0.6 2E-05 47.2 3.9 49 6-57 23-72 (476)
481 1p5z_B DCK, deoxycytidine kina 84.8 0.4 1.4E-05 44.1 2.4 24 34-57 24-47 (263)
482 2w58_A DNAI, primosome compone 84.8 0.55 1.9E-05 41.0 3.2 23 35-57 55-77 (202)
483 2rcn_A Probable GTPase ENGC; Y 84.5 0.3 1E-05 47.4 1.4 50 169-219 127-176 (358)
484 3g5u_A MCG1178, multidrug resi 84.3 0.46 1.6E-05 54.2 3.1 22 36-57 418-439 (1284)
485 3foz_A TRNA delta(2)-isopenten 84.2 0.52 1.8E-05 44.7 2.8 22 35-56 11-32 (316)
486 2qmh_A HPR kinase/phosphorylas 84.1 0.57 2E-05 41.5 2.9 22 36-57 36-57 (205)
487 3q9l_A Septum site-determining 83.9 2.3 8E-05 38.4 7.3 65 135-216 113-186 (260)
488 3cr8_A Sulfate adenylyltranfer 83.9 0.27 9.1E-06 50.8 0.8 22 36-57 371-392 (552)
489 3umf_A Adenylate kinase; rossm 83.6 0.61 2.1E-05 41.9 3.0 22 35-56 30-51 (217)
490 4ag6_A VIRB4 ATPase, type IV s 83.5 0.59 2E-05 45.8 3.1 26 33-58 34-59 (392)
491 3zvl_A Bifunctional polynucleo 83.2 0.59 2E-05 46.3 3.0 21 36-56 260-280 (416)
492 2ocp_A DGK, deoxyguanosine kin 83.1 0.57 1.9E-05 42.4 2.6 22 36-57 4-25 (241)
493 1a7j_A Phosphoribulokinase; tr 82.9 0.39 1.3E-05 45.2 1.4 23 34-56 5-27 (290)
494 2iw3_A Elongation factor 3A; a 82.8 0.51 1.7E-05 51.8 2.5 23 36-58 463-485 (986)
495 3pfi_A Holliday junction ATP-d 82.7 1.5 5.2E-05 41.6 5.6 25 33-57 54-78 (338)
496 2qz4_A Paraplegin; AAA+, SPG7, 82.6 2 6.8E-05 38.9 6.2 22 35-56 40-61 (262)
497 1njg_A DNA polymerase III subu 82.6 0.73 2.5E-05 40.8 3.2 21 36-56 47-67 (250)
498 3ux8_A Excinuclease ABC, A sub 82.5 0.51 1.7E-05 50.0 2.3 20 36-55 350-369 (670)
499 1d2n_A N-ethylmaleimide-sensit 81.8 1.2 4E-05 41.1 4.3 24 34-57 64-87 (272)
500 3d3q_A TRNA delta(2)-isopenten 81.7 0.74 2.5E-05 44.3 2.9 21 36-56 9-29 (340)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=5.1e-69 Score=571.65 Aligned_cols=432 Identities=46% Similarity=0.751 Sum_probs=389.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
|++|++++|+|||.+..+|.. ..+++|+|+|+|.+|+|||||||+|+|.++||++.++|||+|+++++.+.+
T Consensus 26 ~~~li~~inkl~d~l~~lg~~--------~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~ 97 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQN--------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 97 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCC--------GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCcc--------ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC
Confidence 799999999999999988862 235899999999999999999999999999999999999999999998865
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHH
Q 013120 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~ 160 (449)
.+|+.+.+..+..+.++++++.++...+....|.+++++.+++.+++++|+.++++||||||+...+..+|+.++..
T Consensus 98 ---~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~ 174 (772)
T 3zvr_A 98 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 174 (772)
T ss_dssp ---SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHH
T ss_pred ---cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999888888988899
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEE
Q 013120 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 161 ~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
.+.+++..|+.+...+|++|.+++.++..++.+.+++++++.+.|+|+|+||+|++++++...+++.+...++++||..|
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V 254 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence 99999999997655556666778888888888889999999999999999999999887766666666566778899999
Q ss_pred EeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 013120 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 320 (449)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 320 (449)
+++|+.+........++...|..||.++++|..+.++.|+..|.+.|++.+..|++++||+++.+|+.++..++.+++++
T Consensus 255 V~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~ 334 (772)
T 3zvr_A 255 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEY 334 (772)
T ss_dssp CCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999776666677778888889999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHhhccCC--------CCCchhHhHHhhhHHHHhhccCccccCCHHHHHHHHHh
Q 013120 321 GKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR--------PGGDKIYYVFDNQLPAALKRLQFDKQLSMENIRKLITE 392 (449)
Q Consensus 321 g~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 392 (449)
|++++.++.++..+|++++++|++.|.++++|.+ .||+||+++|++.|+..+.++++++.+++++|+++|+|
T Consensus 335 ~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n 414 (772)
T 3zvr_A 335 KNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKN 414 (772)
T ss_dssp HHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHh
Confidence 9888777666777899999999999999999998 58999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013120 393 ADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISE 443 (449)
Q Consensus 393 ~~g~~p~~~~p~~~f~~li~~~~~~~~~P~~~~~~~v~~~l~~~v~~~~~~ 443 (449)
++|.+|++|+|+.+|+.||++||++|++||++||+.|+++|.++|++|..+
T Consensus 415 ~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~~~ 465 (772)
T 3zvr_A 415 IHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCSEK 465 (772)
T ss_dssp CC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998653
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.3e-56 Score=472.42 Aligned_cols=411 Identities=31% Similarity=0.488 Sum_probs=343.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccC-CCcccCChHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHI-PRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 110 (449)
+++|+|+|+|++|||||||+++|+|. ..|+++|.||++++.+.+.+.+........+... ....+.++..+.+.+...
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 58999999999999999999999998 4698999999999999887765432222222221 133466788888888877
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
.....+.+.+++...+.+.+.++..|+++|+|+||+...+..+++.+....+.+++..|+.++.++++++++++.|..++
T Consensus 122 ~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 122 QNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp HHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred HHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 77777778899999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCCc--HHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhHhccC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTT 268 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~ 268 (449)
.++++++++++.+.+||+|+||+|++++++. +.+++.+...++++||++|+|+++.++....+..++...|..||.++
T Consensus 202 ~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~~E~~fF~~~ 281 (608)
T 3szr_A 202 EALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENH 281 (608)
T ss_dssp HHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTTTHHHHTTTC
T ss_pred HHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhcccCCCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999988763 57788888999999999999999999999999999999999999999
Q ss_pred cccchhhh--hcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHH
Q 013120 269 PEYKHLAQ--RMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRLGKPIAADAGGKLYTIMEICRLFDQIY 346 (449)
Q Consensus 269 ~~~~~~~~--~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~ 346 (449)
+||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.+++++|++||.+++.+..+++.+|++++++|++.+
T Consensus 282 ~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~ 361 (608)
T 3szr_A 282 PYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDI 361 (608)
T ss_dssp TTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998764 8999999999999999999999999999999999999999999999888877788888999999999999
Q ss_pred HHhhccCCCCC---chhHhHHhhhHHHHhhccCc----cccCCHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHhhh
Q 013120 347 KEHLDGVRPGG---DKIYYVFDNQLPAALKRLQF----DKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIR 419 (449)
Q Consensus 347 ~~~i~g~~~~~---~~~~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~g~~p~~~~p~~~f~~li~~~~~~~~ 419 (449)
.++++|.+..+ .+++..+.+.|......++. ......++|++++++++|.+++.|+|+.+|+.||++|+++|+
T Consensus 362 ~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~ 441 (608)
T 3szr_A 362 TALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALE 441 (608)
T ss_dssp HHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGH
T ss_pred HHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999997533 46666666666554433321 122346789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 013120 420 GPAEAAVDAVHALLKELVHKAISE 443 (449)
Q Consensus 420 ~P~~~~~~~v~~~l~~~v~~~~~~ 443 (449)
+|+.+|++.|++++.+++.+++++
T Consensus 442 ~Pa~~~v~~V~~~v~~~~~~~~~~ 465 (608)
T 3szr_A 442 EPAVDMLHTVTDMVRLAFTDVSIK 465 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987753
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=1.6e-53 Score=425.17 Aligned_cols=331 Identities=89% Similarity=1.310 Sum_probs=297.1
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
||.|+|++|+||++++.+|..+....++.+...+|+|+|||++|||||||||+|+|.+|+|++.++||++|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 99999999999999999997665667888889999999999999999999999999999999999999999999999988
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHH
Q 013120 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~ 160 (449)
....+++.+.+.++..+.+|+.+..++..++....|.+.+|+.+++.+++.+|..++++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEE
Q 013120 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 161 ~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
.+..++..|+.++|+||+++++++.+..+++++.+++.+++.+.|+|+|+||+|++++++...+.+++....+++||+++
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999999888888999999999999999999999999999887777888888888899999999
Q ss_pred EeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 013120 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 320 (449)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 320 (449)
+++++.+++...+..++...|..||.++++|..+.+++|+.+|+++|+++|.+||+++||.++.+|++.+.+++++|++|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhh
Q 013120 321 GKPIAADAGGK 331 (449)
Q Consensus 321 g~~~~~~~~~~ 331 (449)
|+++++++.++
T Consensus 321 g~~~~~~~~~~ 331 (360)
T 3t34_A 321 GKPIAHGTDSR 331 (360)
T ss_dssp -----------
T ss_pred CCCCCCCHHHH
Confidence 99988765443
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=2.2e-47 Score=379.77 Aligned_cols=337 Identities=52% Similarity=0.826 Sum_probs=305.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
|+.|++++|+|||.+..+|... ..++|+|+|+|.+|+|||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~--------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~ 77 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT 77 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGG--------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC
Confidence 8999999999999999887521 24789999999999999999999999999999999999999999998764
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHH
Q 013120 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~ 160 (449)
.+|+.+.+.++..+++++.+..++..++.++.|.+.+++...+.+++++|+..+++||||||+.+.+..+|+.++.+
T Consensus 78 ---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~ 154 (353)
T 2x2e_A 78 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 154 (353)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHH
T ss_pred ---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHH
Confidence 57888999999999999999999999998998888899999999999999999999999999999888888888889
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEE
Q 013120 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 161 ~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
.+++++..|+.+++.+||+|++++.++.+++.+.+++.+++.+.|+++|+||+|++++++++.+++++....+++||+.+
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 99999999999999999999999988988888889999999999999999999999877666677777777788999999
Q ss_pred EeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 013120 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENELSRL 320 (449)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 320 (449)
.++|+.+.....+..+....|.+||.+++.|+...+++|+..|.+.|++.|..++++++|++..+++..+..++.+++++
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~ 314 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEY 314 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999887777788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhH--HHHHHHHHHHHHHHHH
Q 013120 321 GKPIAADAGGKL--YTIMEICRLFDQIYKE 348 (449)
Q Consensus 321 g~~~~~~~~~~~--~~l~~~~~~f~~~~~~ 348 (449)
+..++.++..+. .++++++++|++.|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 315 KNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 987766654443 7899999999999864
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=9.1e-41 Score=326.85 Aligned_cols=310 Identities=52% Similarity=0.824 Sum_probs=245.2
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCC
Q 013120 2 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE 81 (449)
Q Consensus 2 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~ 81 (449)
|.|++++|+|++++..+|.. ...+|+|+|+|.+|||||||+|+|+|.+++|++.++||++|+++++++.+.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~---------~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~ 71 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD---------PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI 71 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC---------TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCC
T ss_pred CchHHHHHHHHHHHHHcCCC---------CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCC
Confidence 57999999999999877652 248899999999999999999999999999999999999999999988643
Q ss_pred -----CCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCC
Q 013120 82 -----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPD 156 (449)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~ 156 (449)
....|..+.+.++..+.++.++.+++..++.+..|...+++.+++.+++.+|...+++||||||+.+.+..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~ 151 (315)
T 1jwy_B 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPT 151 (315)
T ss_dssp CTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------
T ss_pred cccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCch
Confidence 346788999999999999999999999998888888889999999999999999999999999998766656677
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCC
Q 013120 157 SIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 236 (449)
Q Consensus 157 ~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g 236 (449)
.+...+..++..|+.++|++|+++++++.++...+...+++.+++.+.++++|+||+|+..+.....+.++.....++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCC
Confidence 78888899999999999999999998777776666667889999889999999999999977655566666544556689
Q ss_pred eEEEEeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013120 237 WIGVVNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKTVLELENE 316 (449)
Q Consensus 237 ~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~e 316 (449)
|+.+++.|+.+++.+....+....+..||...++|..+..+.|+..|...+++.+..++++++|++..++++.+.+++++
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~ 311 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGE 311 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998877777777777888899888888888888999999999999999999999999999999999999999
Q ss_pred HHhc
Q 013120 317 LSRL 320 (449)
Q Consensus 317 L~~l 320 (449)
|++|
T Consensus 312 l~~~ 315 (315)
T 1jwy_B 312 LSTY 315 (315)
T ss_dssp ----
T ss_pred HHhC
Confidence 9765
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=4.7e-38 Score=305.10 Aligned_cols=298 Identities=58% Similarity=0.908 Sum_probs=259.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLE 80 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~ 80 (449)
|++|++++++|++.+..++.. ....+|+|+|+|.+|+|||||+|+|+|.+++|++.++||++|+.+++.+.+
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~--------~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~ 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQN--------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCC--------TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHhcCCC--------CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC
Confidence 999999999999999877652 124789999999999999999999999999999999999999999988764
Q ss_pred CCCccceeeccCCCcccCChHHHHHHHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHH
Q 013120 81 EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQ 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~ 160 (449)
.+|..+.+..+..+++++.+...+...+.++.|.+.+++...+.+++++|...+++||||||+.+....++++++..
T Consensus 73 ---~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~ 149 (299)
T 2aka_B 73 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 149 (299)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHH
T ss_pred ---cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHH
Confidence 46778888888889999999988888888888888899999999999999889999999999998766566777778
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEE
Q 013120 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 161 ~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (449)
.+..++..|++.++++|++|.+++.++..++...+++.+++.+.|+++|+||+|+.++.....+.+++....+..||+.+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 88999999999999998777778778877777788999999899999999999999766555666666545666789999
Q ss_pred EeCChhhhhccCCHHHHHHHHHhHhccCcccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 013120 241 VNRSQADINKNVDMIAARRREREYFSTTPEYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQSLISKT 309 (449)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~ 309 (449)
.+.|+...............|.+||+....|.....++|+..|.+.|++.+..++++++|++.++++++
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 898887656666677777789999998889999989999999999999999999999999999998865
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.85 E-value=3.4e-20 Score=198.64 Aligned_cols=172 Identities=17% Similarity=0.257 Sum_probs=110.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHH---HH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEI---QD 109 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~ 109 (449)
.-++|+|+|.+|+|||||+|+|+|.+++|++..++|.+|+.+.+.. . ......+.+.......++..+...+ .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~--~-~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGP--E-KKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECS--S-CEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCC--C-CeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 4568999999999999999999999999999999999999987521 1 1111111111111122222222110 01
Q ss_pred HHhhhhCCCCCcccccEEEEEecCCC---CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc
Q 013120 110 ETDRETGRTKQISSVPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD 186 (449)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~---~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d 186 (449)
....+...+.........++++.|.. .+++||||||+..... ...++..|++++|++|+|+++. ..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~Vvda~-~~ 213 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILFVMRAS-QP 213 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEEEEETT-ST
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEEEEeCC-Cc
Confidence 11112222233344556666776653 4799999999987432 2577899999999998888654 33
Q ss_pred ccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
....+...+.+.+...+.++++|+||+|+...
T Consensus 214 ~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 214 CTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred cchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 43333333444666668899999999999754
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=1.4e-17 Score=161.81 Aligned_cols=208 Identities=16% Similarity=0.239 Sum_probs=124.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...|+++|.+|||||||+|+|+|..+...+..+ +|+......
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~------------------------------------- 52 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGV------------------------------------- 52 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE-------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEE-------------------------------------
Confidence 347999999999999999999998874333222 222221111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.......+++||||||+.+... .....+.+...+..|+..+|++|+|+++.+. . ....
T Consensus 53 -----------------~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~-~-~~~~ 110 (308)
T 3iev_A 53 -----------------KNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATEG-W-RPRD 110 (308)
T ss_dssp -----------------EEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTTB-S-CHHH
T ss_pred -----------------EecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCCC-C-Cchh
Confidence 1111145689999999987541 1346677788899999999999999876542 2 2333
Q ss_pred HHH-HHHhCCCCCceEEEeccccccCCCCcHHHHHcCccccc--CCCeEEEEeCChhhhhccCCHHHHHHHHHhHhccCc
Q 013120 193 IKI-SREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRL--KFPWIGVVNRSQADINKNVDMIAARRREREYFSTTP 269 (449)
Q Consensus 193 ~~l-~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l--~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~ 269 (449)
..+ +..+...+.++++|+||+|+..+.....+.+......+ ...++.+++..+.+++.+...+.....+...+....
T Consensus 111 ~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 334 56666567899999999999843333333222111112 245677777766666665555544433333222222
Q ss_pred ccchhhhhcchHHHHHHHHHHHHHHHHhhhHHHH
Q 013120 270 EYKHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQ 303 (449)
Q Consensus 270 ~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~ 303 (449)
..++... .....+.+.+.+...+.+++|+-.
T Consensus 191 ~~td~~~---~~~~~e~irek~~~~~~~eiP~~~ 221 (308)
T 3iev_A 191 MITDLPL---RLLAAEIVREKAMMLTREEVPTSI 221 (308)
T ss_dssp CCBCCCH---HHHHHHHHHHHHHHTCCTTHHHHC
T ss_pred cccCCCH---HHHHHHHHHHHHHhhhhhhcCCee
Confidence 2222221 123344455666666777777643
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.71 E-value=1.9e-17 Score=160.26 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=118.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+.|+++|.+|+|||||+|+|+|..+..++..+ +|+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~-------------------------------------- 48 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG-------------------------------------- 48 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE--------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE--------------------------------------
Confidence 357999999999999999999998874332221 23222110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+......++.||||||+.+... .+.+.+...+..|++.+|++++|++..+. +. ...
T Consensus 49 -----------------i~~~~~~~l~l~DTpG~~~~~~-----~l~~~~~~~~~~~l~~ad~il~VvD~~~~-~~-~~~ 104 (301)
T 1wf3_A 49 -----------------ILTEGRRQIVFVDTPGLHKPMD-----ALGEFMDQEVYEALADVNAVVWVVDLRHP-PT-PED 104 (301)
T ss_dssp -----------------EEEETTEEEEEEECCCCCCCCS-----HHHHHHHHHHHHHTSSCSEEEEEEETTSC-CC-HHH
T ss_pred -----------------EEEeCCcEEEEecCccccchhh-----HHHHHHHHHHHHHHhcCCEEEEEEECCCC-CC-hHH
Confidence 1112345789999999986432 36666778899999999999999876542 22 223
Q ss_pred HHHHHHhCCC--CCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhHhccCcc
Q 013120 193 IKISREVDPT--GERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFSTTPE 270 (449)
Q Consensus 193 ~~l~~~~~~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~ 270 (449)
..+...+... +.++++|+||+|+........+.++. ......++.+++..+.+++.+...+.....+..+++....
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~ 182 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHE--LLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDY 182 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHH--TSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTC
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHH--hcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCccc
Confidence 3344444443 78999999999997543212232222 1001124444445556665555444333333333332222
Q ss_pred c-chhhhhcchHHHHHHHHHHHHHHHHhhhHHHH
Q 013120 271 Y-KHLAQRMGSEHLAKMLSKHLETVIKSRIPGIQ 303 (449)
Q Consensus 271 ~-~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~ 303 (449)
+ ++..+++ ...+.+.+.+.+.+.+++|+..
T Consensus 183 ~~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~ 213 (301)
T 1wf3_A 183 AKSDQTFGE---WVAEILREEAMKRLWHEVPYAV 213 (301)
T ss_dssp CSBSSCHHH---HHHHHHHHHHHHTCCTTHHHHC
T ss_pred ccCCCCHHH---HHHHHHHHHHHHHhhcccCceE
Confidence 2 3333222 2344555666677777777644
No 10
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.60 E-value=9.6e-16 Score=144.80 Aligned_cols=154 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+|+|+++|.+|+|||||+|+|+|..+ .++.- .+|.-..
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~---------------------------------------- 39 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKK---------------------------------------- 39 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEE----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEE----------------------------------------
Confidence 47999999999999999999999863 22211 1111110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~ 190 (449)
.-. +.. ....+.||||||+.+....++.. ...+.+++.|+ .++|++|+|++..+ ..
T Consensus 40 ------------~~~--~~~-~~~~~~lvDtpG~~~~~~~~~~~---~~~e~i~~~~~~~~~~d~vi~VvDas~----~~ 97 (256)
T 3iby_A 40 ------------TGE--FLL-GEHLIEITDLPGVYSLVANAEGI---SQDEQIAAQSVIDLEYDCIINVIDACH----LE 97 (256)
T ss_dssp ------------EEE--EEE-TTEEEEEEECCCCSSCC---------CHHHHHHHHHHHHSCCSEEEEEEEGGG----HH
T ss_pred ------------EEE--EEE-CCeEEEEEeCCCcccccccccCC---CHHHHHHHHHHhhCCCCEEEEEeeCCC----ch
Confidence 001 111 12368999999998765321111 12245678888 89999999998665 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCC---cHHHHHcCcccccCCCeEEEEeCChhhhhccCCH
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (449)
..+.+..++...+.|+++|+||+|+..... +... +. ..++.+++.++++.+.+++.+...
T Consensus 98 ~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~-l~---~~lg~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 98 RHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEK-LE---SLLGCSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp HHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHH-HH---HHHCSCEEECBGGGTBSHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHH-HH---HHcCCCEEEEECCCCCCHHHHHHH
Confidence 556677788888999999999999875432 1212 11 234567777777776666554443
No 11
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.59 E-value=2.1e-15 Score=154.50 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=97.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|.+|+|||||+|+|+|.++. .++..|
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a-----~vs~~~------------------------------------------- 275 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA-----IVTDIP------------------------------------------- 275 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-----CCCCSS-------------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC-----ccCCCC-------------------------------------------
Confidence 58999999999999999999997642 222222
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCC-cCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~-~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
|++..+....+. + +...+.|+||||+. ..... +...--..+..|++.+|++|+|++..+.. +.+..
T Consensus 276 -gTT~d~~~~~i~--~---~g~~~~l~DTaG~~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~--s~~~~ 342 (482)
T 1xzp_A 276 -GTTRDVISEEIV--I---RGILFRIVDTAGVRSETNDL-----VERLGIERTLQEIEKADIVLFVLDASSPL--DEEDR 342 (482)
T ss_dssp -CCSSCSCCEEEE--E---TTEEEEEEESSCCCSSCCTT-----CCCCCHHHHHHHHHHCSEEEEEEETTSCC--CHHHH
T ss_pred -CeeeeeEEEEEe--c---CCeEEEEEECCCccccchhh-----HHHHHHHHHHHHhhcccEEEEEecCCCCC--CHHHH
Confidence 222222222222 1 23458999999997 53321 11111234678999999999999865432 22334
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
++...+ .+.++++|+||+|+.... ...++.+. ......++.++..++.+++.+...+...
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~~--~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVEKI-NEEEIKNK--LGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHHH--HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHh--cCCCEEEEEECccccccc-CHHHHHHH--hcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455555 368999999999997542 22221110 1122468888888887777766655443
No 12
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.58 E-value=1.9e-16 Score=153.22 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
.-+.|+++|.+|+|||||+|+|+|..+.+++..+ +|+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~-------------------------------------- 48 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV-------------------------------------- 48 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE--------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEE--------------------------------------
Confidence 3458999999999999999999998763332211 2222210
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCC-cCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~-~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
| +...+..+++++||||+. .... .+.......+..+++.+|+++++++... +. .
T Consensus 49 ----g-------------i~~~~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~-~ 103 (301)
T 1ega_A 49 ----G-------------IHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVELVIFVVEGTR--WT-P 103 (301)
T ss_dssp ----E-------------EEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEEEEEEEEETTC--CC-H
T ss_pred ----E-------------EEEECCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCCEEEEEEeCCC--CC-H
Confidence 0 111123468999999997 3210 1222223335667888999988887543 43 3
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
....+++.+...+.|.++|+||+|+..
T Consensus 104 ~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 104 DDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred HHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 334566666666899999999999986
No 13
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.56 E-value=8e-15 Score=138.66 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=80.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
..++|+|+|.+|||||||+|+|+|...++.+..+ +|+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 65 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ----------------------------------- 65 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-----------------------------------
Confidence 4568999999999999999999998865554332 333321111
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
......++.||||||+.+.... .......+...+..+++.+|++|+|++... +...
T Consensus 66 --------------------~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~ 121 (260)
T 2xtp_A 66 --------------------GSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQ 121 (260)
T ss_dssp --------------------EEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHH
T ss_pred --------------------EEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHH
Confidence 0112346899999999875432 122223445556778899999999987653 3222
Q ss_pred --HHHHHHHHhCCC--CCceEEEec-cccccC
Q 013120 191 --DAIKISREVDPT--GERTFGVLT-KIDLMD 217 (449)
Q Consensus 191 --~~~~l~~~~~~~--~~rti~Vlt-K~D~~~ 217 (449)
..+..+..+... ..+.++|+| |+|+..
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 223333333221 467888888 999984
No 14
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.56 E-value=1.1e-15 Score=156.38 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=78.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|.+|+|||||+|+|+|.++ ..++..|
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~------------------------------------------- 265 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMP------------------------------------------- 265 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCC-------------------------------------------
Confidence 4699999999999999999999864 2222222
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~ 192 (449)
|.+..+....+. + +...+.||||||+.+.... +....-..+..|+.++|++|+|++..+..... ...
T Consensus 266 -gtT~d~~~~~i~--~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~ 334 (476)
T 3gee_A 266 -GTTRDYIEECFI--H---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEI 334 (476)
T ss_dssp --------CEEEE--E---TTEEEEEEC-------------------------CCCSSCSEEEEEEETTTCSSGGGHHHH
T ss_pred -CceEEEEEEEEE--E---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHH
Confidence 111111111111 1 2346999999999763211 11111234667899999999998866532211 144
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
..+.+.+. +.++++|+||+|+........+.+... . ...++.++...+.+++.+...+
T Consensus 335 ~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i 392 (476)
T 3gee_A 335 RELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHM 392 (476)
T ss_dssp HHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHH
Confidence 55666665 689999999999976542111111111 0 1456777777766666555444
No 15
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.55 E-value=6.4e-15 Score=135.57 Aligned_cols=127 Identities=24% Similarity=0.327 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCC-cccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL-PRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~l-P~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
..|+|+|+|..|+|||||+|+|+|..++ ..+..+ +|+.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 68 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--------------------------------------- 68 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE---------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce---------------------------------------
Confidence 5689999999999999999999998632 111111 12211
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC---CCeEEEEEecCCCcc
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK---PNCIILAISPANQDL 187 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~---~d~iIl~v~~a~~d~ 187 (449)
....+.......+.||||||+..... +....+.+..+...|+.. +|++|++++... .+
T Consensus 69 ---------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~ 129 (223)
T 4dhe_A 69 ---------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR-PL 129 (223)
T ss_dssp ---------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CC
T ss_pred ---------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC-CC
Confidence 11112223346799999999876432 233456677888888877 566888876543 22
Q ss_pred cchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 188 ATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 188 ~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
......+.+.+...+.++++|+||+|+...
T Consensus 130 -~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 130 -TELDRRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp -CHHHHHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred -CHHHHHHHHHHHhcCCCEEEEEeccccCCh
Confidence 344455666666668899999999999864
No 16
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.54 E-value=1.3e-15 Score=155.32 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=85.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|.+|+|||||+|+|+|.++. .++..|
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a-----~v~~~~------------------------------------------- 256 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRA-----IVTDLP------------------------------------------- 256 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBS-----CCSCCT-------------------------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcc-----cccCCC-------------------------------------------
Confidence 36999999999999999999997642 222222
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
|.+..+....+. + +..+++||||||+.+.... +....-..+..++..+|.+|+|++..+ .. ......
T Consensus 257 -gtT~d~~~~~i~--~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~-~~-~~~~~~ 323 (462)
T 3geh_A 257 -GTTRDVVESQLV--V---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTIDAAT-GW-TTGDQE 323 (462)
T ss_dssp -TCCHHHHHHEEE--E---TTEEEEECC-------------------------CCCCSCSEEEEEEETTT-CS-CHHHHH
T ss_pred -CeeEEEEEEEEE--E---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEeccCC-CC-CHHHHH
Confidence 111111111111 1 2346899999999653211 111112335667899999999987654 22 333345
Q ss_pred HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 013120 195 ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAA 257 (449)
Q Consensus 195 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (449)
+.+.+.. .++++|+||+|+...... . .........+++.++...+.+++.+...+..
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~~--~--~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQLI--T--SLEYPENITQIVHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGGS--T--TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHhccC--CcEEEEEECCCCCcchhh--H--HHHHhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5666643 699999999999754321 1 1111223456788888887777666554443
No 17
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.54 E-value=2.8e-14 Score=124.17 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=62.7
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHH-HHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAI-KISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~-~l~~~~~~~~~rti~VltK~ 213 (449)
.+.|+||||.... ..+...|++++|++|++++..+.... ....+ .+.+.....+.++++|+||+
T Consensus 52 ~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1kao_A 52 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118 (167)
T ss_dssp EEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred EEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 4899999996653 45677899999999999875542211 01111 23344444578999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (449)
|+..................+.+++.+++..+.+++.....
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp GGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 98753321111111111123456777777776666554433
No 18
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.53 E-value=3.2e-14 Score=133.67 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=74.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcc--cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.+|+++|.+|+|||||+|+|+|..++..+... +|+.+.....
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~------------------------------------ 65 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR------------------------------------ 65 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE------------------------------------
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE------------------------------------
Confidence 48999999999999999999998876554332 4444422221
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
..+...++||||||+.+..... .+.....+......+...+|++|+|++...........
T Consensus 66 -------------------~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~ 125 (247)
T 3lxw_A 66 -------------------RWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQA 125 (247)
T ss_dssp -------------------EETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHH
T ss_pred -------------------EECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHH
Confidence 1123468999999997643220 01122222222233348999999998755311112223
Q ss_pred HHHHHHh-CCC--CCceEEEeccccccC
Q 013120 193 IKISREV-DPT--GERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~-~~~--~~rti~VltK~D~~~ 217 (449)
++.++.. .+. +.++|+|.||.|+..
T Consensus 126 ~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 126 VRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 3344433 221 568899999999965
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=128.79 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=91.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+.+......|......
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 56 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR-------------------------------------- 56 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE--------------------------------------
Confidence 346899999999999999999998775322211111111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--ch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~ 190 (449)
.+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+.. ..
T Consensus 57 --------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 57 --------------TIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp --------------EEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 0001 001135899999996553 33477899999999999876542211 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
..+..+......+.++++|+||+|+..................+..|+.+++..+.+++..+.
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 233344555556789999999999976543211111111123345677776666555544433
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.51 E-value=1.5e-14 Score=147.26 Aligned_cols=162 Identities=17% Similarity=0.287 Sum_probs=96.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+|.|++||.+|+|||||+|+|+|..+ ..+...|
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~------------------------------------------ 33 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEE------------------------------------------ 33 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCC------------------------------------------
Confidence 48999999999999999999999764 1222222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
|.+...... .+.+ +...+.||||||+..... ..+...++..+..|++++|++|+|++..+ .. +....
T Consensus 34 --g~T~d~~~~--~~~~---~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~D~~~-~~-~~~d~ 100 (439)
T 1mky_A 34 --GVTRDPVQD--TVEW---YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVVDGKR-GI-TKEDE 100 (439)
T ss_dssp ------CCSEE--EEEE---TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEEETTT-CC-CHHHH
T ss_pred --CCccceeeE--EEEE---CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHHH
Confidence 111111111 1111 223589999999975321 12456678889999999999999987543 22 22223
Q ss_pred HHHHHhCCCCCceEEEeccccccCC-CCcH-HHHHcCcccccCC-CeEEEEeCChhhhhccCCHHHHHHH
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDK-GTDA-ADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIAARRR 260 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (449)
.++..+...+.++++|+||+|+... ..+. .++ ..++. .++.+++..+.++.++.+.+.....
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 3444444457899999999998632 1111 121 23444 4677777777777776665554444
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.51 E-value=2.1e-14 Score=124.59 Aligned_cols=149 Identities=18% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+|+|+|+|..|+|||||+|+|.+..+.+.+..+ +|..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 478999999999999999999987642111111 11111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
....+.. ....+.++||||...... ...........+++.+|++|++++..+. .. ...
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~-~~~ 97 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDGRAE-LT-QAD 97 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEESSSC-CC-HHH
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEECCCc-cc-HhH
Confidence 0011111 123689999999876421 3344567788899999999999876542 22 222
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCC-CeEEEEeCChhhhhc
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINK 250 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~ 250 (449)
..+.+.+...+.++++|+||+|+.+...+..++. .++. .|+.+++.++.+++.
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 98 YEVAEYLRRKGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEE 151 (161)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHH
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHH
Confidence 2233333334789999999999986532222221 2233 466666655554433
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.51 E-value=1.6e-14 Score=136.61 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=94.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
++|+++|.+|+|||||+|+|+|..+. .+.- .+|...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~------------------------------------------ 42 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEK------------------------------------------ 42 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEE------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEE------------------------------------------
Confidence 58999999999999999999997752 2211 111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~~ 191 (449)
.... +.. ....+.||||||..+.... ... +.++..|+ .++|++|+|++..+. ..
T Consensus 43 ----------~~~~--~~~-~~~~~~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d~ii~V~D~t~~----~~ 98 (258)
T 3a1s_A 43 ----------KEGV--FTY-KGYTINLIDLPGTYSLGYS----SID---EKIARDYLLKGDADLVILVADSVNP----EQ 98 (258)
T ss_dssp ----------EEEE--EEE-TTEEEEEEECCCCSSCCSS----SHH---HHHHHHHHHHSCCSEEEEEEETTSC----HH
T ss_pred ----------EEEE--EEE-CCeEEEEEECCCcCccCCC----CHH---HHHHHHHHhhcCCCEEEEEeCCCch----hh
Confidence 1111 111 2246899999999875432 111 35667777 589999999876652 23
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCC---cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.+.+..++...+.|+++|+||+|+..... +..++. ..++.+++.++++.+.+++.+...+
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ----KHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH----HHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH----HHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 44566666667899999999999864321 222221 2334567777776666665554443
No 23
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.51 E-value=5.4e-14 Score=130.21 Aligned_cols=135 Identities=18% Similarity=0.246 Sum_probs=79.7
Q ss_pred cCCCCCCCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHH
Q 013120 26 ALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRK 105 (449)
Q Consensus 26 ~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (449)
.+|......++|+|+|.+|+|||||+|+|+|..+.+.....+|+..
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~---------------------------------- 66 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL---------------------------------- 66 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE----------------------------------
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee----------------------------------
Confidence 4454445667899999999999999999999875211111111111
Q ss_pred HHHHHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC
Q 013120 106 EIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ 185 (449)
Q Consensus 106 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~ 185 (449)
.+.........+.||||||....+.... .. ........|...+|++|+|++..+.
T Consensus 67 ---------------------~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~--~~~~~~~~~~~~~d~~i~v~d~~~~ 121 (228)
T 2qu8_A 67 ---------------------YVGHFDHKLNKYQIIDTPGLLDRAFENR--NT--IEMTTITALAHINGVILFIIDISEQ 121 (228)
T ss_dssp ---------------------EEEEEEETTEEEEEEECTTTTTSCGGGC--CH--HHHHHHHHHHTSSEEEEEEEETTCT
T ss_pred ---------------------eeeeeecCCCeEEEEECCCCcCcccchh--hh--HHHHHHHHhhccccEEEEEEecccc
Confidence 0001111224689999999976432210 00 0012234567888999998876543
Q ss_pred c-ccchHHHHHHHHhCCC--CCceEEEeccccccCCC
Q 013120 186 D-LATSDAIKISREVDPT--GERTFGVLTKIDLMDKG 219 (449)
Q Consensus 186 d-~~~~~~~~l~~~~~~~--~~rti~VltK~D~~~~~ 219 (449)
. +.......+...+... +.++++|+||+|+....
T Consensus 122 ~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 122 CGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp TSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred cCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 2 2223344556666554 78999999999998643
No 24
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.51 E-value=4.2e-14 Score=127.08 Aligned_cols=126 Identities=26% Similarity=0.424 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|.+|+|||||+|+|+|..+.+.... .|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS----KP----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC----CC-----------------------------------------
Confidence 568999999999999999999999865321110 00
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLAT 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---d~iIl~v~~a~~d~~~ 189 (449)
|.+. ......+ ..++.+|||||+..... +.+.......+...|+..+ |++|+|++..+ . .+
T Consensus 57 ---~~t~----~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~-~~ 120 (195)
T 1svi_A 57 ---GKTQ----TLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVDLRH-A-PS 120 (195)
T ss_dssp ------C----CEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-C-CC
T ss_pred ---Ccee----eEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC-C-CC
Confidence 1000 0001111 13699999999765432 2233556677788888877 88888887543 2 23
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.....+.+.+...+.++++|+||+|+....
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 333445555555678999999999998653
No 25
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.50 E-value=6.3e-14 Score=125.58 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCccc-ccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..|+|+|+|..|+|||||+|+|+|..+-+.+..+. |+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~---------------------------------------- 61 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI---------------------------------------- 61 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe----------------------------------------
Confidence 56799999999999999999999987422222111 1111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCC---CeEEEEEecCCCccc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKP---NCIILAISPANQDLA 188 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---d~iIl~v~~a~~d~~ 188 (449)
.... ...++.++||||+..... +.........+...|++.+ |+++++++... . .
T Consensus 62 ---------------~~~~---~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~-~-~ 118 (195)
T 3pqc_A 62 ---------------NFYL---VNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRI-P-P 118 (195)
T ss_dssp ---------------EEEE---ETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-C-C
T ss_pred ---------------EEEE---ECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCC-C-C
Confidence 0000 123688999999765322 2223455677788888776 77877776443 2 2
Q ss_pred chHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 189 TSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 189 ~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
......+.+.+...+.++++|+||+|+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 119 QDSDLMMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEChhcCChH
Confidence 3333345555555578999999999998543
No 26
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.50 E-value=1.2e-14 Score=138.73 Aligned_cols=152 Identities=21% Similarity=0.292 Sum_probs=94.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+.|+++|.+|+|||||+|+|+|..+ .++.-+ +|.-+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~---------------------------------------- 42 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKE---------------------------------------- 42 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEE----------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEE----------------------------------------
Confidence 5899999999999999999999874 332211 1211111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~~ 191 (449)
-.+.. ....+.||||||+.+........... +.+++.|+ .++|++|+|+++.+ ...
T Consensus 43 --------------~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~----~~~ 100 (274)
T 3i8s_A 43 --------------GQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LER 100 (274)
T ss_dssp --------------EEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGG----HHH
T ss_pred --------------EEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCC----hHH
Confidence 11111 23468999999998765322112232 34566675 79999999998665 233
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCC---cHHHHHcCcccccCCCeEEEEeCChhhhhccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (449)
.+.+..++...+.|+++|+||+|+..... +...+ ...++.+++.++++.+.+++.+..
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL----SARLGCPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH----HHHHTSCEEECCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH----HHhcCCCEEEEEcCCCCCHHHHHH
Confidence 44455555555899999999999875332 12121 123445677777777777665443
No 27
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=131.46 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc--ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDE 110 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (449)
..++|+++|.+|+|||||+|+|+|..+++.+.. .+|+.+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~---------------------------------- 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS---------------------------------- 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEE----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEE----------------------------------
Confidence 456899999999999999999999887544432 23433321111
Q ss_pred HhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 111 TDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
. .....++||||||+...... ..+....+......+.+.+|++|+|++....+....
T Consensus 74 --------------------~-~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 74 --------------------S-WKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp --------------------E-ETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred --------------------E-eCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 0 12236899999999875432 223444556666667788999999887543222222
Q ss_pred HHHHHHHH-hC-CCCCceEEEeccccccCCC
Q 013120 191 DAIKISRE-VD-PTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 191 ~~~~l~~~-~~-~~~~rti~VltK~D~~~~~ 219 (449)
..+..+.. +. ....++++|+||+|+....
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 22222221 11 1245899999999998643
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=3.2e-14 Score=125.89 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|.+|+|||||+|+|++..+.+....+++.......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~------------------------------------- 51 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK------------------------------------- 51 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE-------------------------------------
Confidence 3458999999999999999999998764332222211111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~ 190 (449)
.+.+ ......+.++||||.... ..+...|++++|++|+|++..+.... . .
T Consensus 52 --------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 52 --------------VLDV-DGVKVKLQMWDTAGQERF-------------RSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 0001 011235899999996542 45577889999999999876542211 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+..+....+.+.++++|+||+|+...
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 2333444444567899999999999864
No 29
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.49 E-value=3.8e-14 Score=123.49 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=72.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 44 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK--------------------------------------- 44 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEE---------------------------------------
Confidence 4899999999999999999998775 222222221111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~ 192 (449)
+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+... ...
T Consensus 45 -------------~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (168)
T 1u8z_A 45 -------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATADF 97 (168)
T ss_dssp -------------EEE-TTEEEEEEEEECCC---C-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -------------EEE-CCEEEEEEEEECCCcchh-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 000 111236889999996543 567788999999999998765422110 111
Q ss_pred H-HHHHHhCCCCCceEEEeccccccCC
Q 013120 193 I-KISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~-~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+ .+.......+.++++|+||+|+.+.
T Consensus 98 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 98 REQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCCCcEEEEEECcccccc
Confidence 1 2333334457899999999999753
No 30
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.49 E-value=7.8e-14 Score=123.99 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+. .....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEE-------------------------------------
Confidence 3458999999999999999999987752 22222221111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+.+... .
T Consensus 59 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 59 ---------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 109 (187)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000 011235889999997653 566788999999999998765422110 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAI-KISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~-~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+ .+.......+.++++|+||+|+.+.
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 111 2333344457899999999999753
No 31
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.49 E-value=6.5e-14 Score=123.85 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=74.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|.+|+|||||+|+|+|..+...+ ..|
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~-----~~~------------------------------------------- 36 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVT-----DIA------------------------------------------- 36 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCC-----SST-------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceee-----CCC-------------------------------------------
Confidence 47999999999999999999997641111 111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccchHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAI 193 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~~~~~ 193 (449)
+.+..+.... +.+ +...+.++||||+.+.... .....-..+..|++++|++|+|++..+.. ......+
T Consensus 37 -~~t~~~~~~~--~~~---~~~~~~l~Dt~G~~~~~~~-----~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~ 105 (172)
T 2gj8_A 37 -GTTRDVLREH--IHI---DGMPLHIIDTAGLREASDE-----VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW 105 (172)
T ss_dssp -TCCCSCEEEE--EEE---TTEEEEEEECCCCSCCSSH-----HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHC
T ss_pred -CceeceeeEE--EEE---CCeEEEEEECCCcccchhH-----HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence 1111111111 111 1234789999999763211 22111122456789999999998765432 2122333
Q ss_pred HHHHHhCCCCCceEEEeccccccCC
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+....+.+.++++|+||+|+...
T Consensus 106 ~~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 106 PEFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp HHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred HHHHHhcccCCCEEEEEECccCCcc
Confidence 3344444557899999999998643
No 32
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.49 E-value=1.2e-13 Score=141.32 Aligned_cols=130 Identities=15% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+++|.+|+|||||+|+|+|......+ ..|
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-----~~~----------------------------------------- 227 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-----NVA----------------------------------------- 227 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----C-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccC-----CCC-----------------------------------------
Confidence 5678999999999999999999997642222 222
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|.+...... .+.+ +...++||||||+.+....... .+......+..|++.+|++|+|++... .+ ....
T Consensus 228 ---gtt~~~~~~--~~~~---~~~~~~l~DT~G~~~~~~~~~~--~e~~~~~~~~~~~~~ad~~llviD~~~-~~-~~~~ 295 (456)
T 4dcu_A 228 ---GTTRDAVDT--SFTY---NQQEFVIVDTAGMRKKGKVYET--TEKYSVLRALKAIDRSEVVAVVLDGEE-GI-IEQD 295 (456)
T ss_dssp -------CTTSE--EEEE---TTEEEEETTGGGTTTBTTBCCC--CSHHHHHHHHHHHHHCSEEEEEEETTT-CC-CHHH
T ss_pred ---CeEEEEEEE--EEEE---CCceEEEEECCCCCcCcccchH--HHHHHHHHHHHHHhhCCEEEEEEeCCC-Cc-CHHH
Confidence 111111111 1111 2236899999998765422111 111112224568999999999887543 33 3444
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (449)
..++..+...+.++++|+||+|+.+...
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 5566666667899999999999986543
No 33
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=6.3e-14 Score=146.10 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=100.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCC--cccCcccccccEEEEEEecCCCCccceeeccCCCccc-CChHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFL--PRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRF-TDFAAVRKEIQ 108 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~l--P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 108 (449)
...|.|+|+|.+|+|||||+|+|+|..+. +++..+.|.+.+.+... +.+ ... .+... .+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~--~~~-----~i~--~g~~l~~~~~------- 126 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHG--ETE-----GTV--PGNALVVDPE------- 126 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECC--SSS-----EEE--CCC--------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEEC--Ccc-----ccc--CCceeeecCc-------
Confidence 36789999999999999999999999874 57777777665444321 100 000 00000 0000
Q ss_pred HHHhhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHH--HHHHHHHHhcCCCeEEEEEecCCCc
Q 013120 109 DETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQD--IENMVRSYIEKPNCIILAISPANQD 186 (449)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~--~~~~~~~yi~~~d~iIl~v~~a~~d 186 (449)
.....+...+..+....+++.+.++...+++||||||+.+.... .+... ...++..|+..+|++|+|+++.+.+
T Consensus 127 ~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~ 202 (550)
T 2qpt_A 127 KPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLE 202 (550)
T ss_dssp -----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCC
T ss_pred ccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC
Confidence 00001111123344555666555544457999999999863211 01111 3567888999999999998865433
Q ss_pred ccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 187 LATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
. ......+++.+...+.++++|+||+|+..+
T Consensus 203 ~-~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 203 I-SDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp C-CHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred C-CHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 3 334455777777778899999999999864
No 34
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.49 E-value=5.1e-14 Score=126.46 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|.+|+|||||+|+|++..+.+....+. ... ...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~--~~~------------------------------------- 64 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVE--FST------------------------------------- 64 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEE--EEE-------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-cee--EEE-------------------------------------
Confidence 4589999999999999999999987632221110 000 000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
..+.+ ......+.|+||||.... ..+...|++++|++|+|++..+..... ..
T Consensus 65 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~ 118 (193)
T 2oil_A 65 ------------RTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVER 118 (193)
T ss_dssp ------------EEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 00001 112235899999998664 234678999999999998755422110 12
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..+......+.++++|+||+|+...
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 222233333457899999999999753
No 35
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.49 E-value=7.2e-14 Score=133.28 Aligned_cols=136 Identities=18% Similarity=0.306 Sum_probs=79.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|+|.+.++.+...++...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 3799999999999999999999887655432111100
Q ss_pred hCCCCCcccccEEEEEecCC-CCCcEEEeCCCCCcCCcCCC-CCchHHHHHHHHHHHhcC-------------CCeEEEE
Q 013120 115 TGRTKQISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVEGQ-PDSIVQDIENMVRSYIEK-------------PNCIILA 179 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPGl~~~~~~~q-~~~~~~~~~~~~~~yi~~-------------~d~iIl~ 179 (449)
..+ +..+.....+...+ ...++||||||+.+...... -..+...+.+....|+.. +|+++++
T Consensus 46 -~~t--~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~ 122 (274)
T 3t5d_A 46 -KKT--VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF 122 (274)
T ss_dssp ------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEE
T ss_pred -CCc--eEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEE
Confidence 000 01111111122111 13689999999965432211 112223333334666664 7789898
Q ss_pred EecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 180 ISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 180 v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
++++...+. .....+++.+.. +.++|+|+||+|+..+
T Consensus 123 i~~~~~~~~-~~d~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 123 IAPSGHGLK-PLDIEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp ECSCCSSCC-HHHHHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred ecCCCCCCC-HHHHHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 887765443 444567777777 8999999999999754
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.49 E-value=7.5e-14 Score=123.30 Aligned_cols=154 Identities=13% Similarity=0.242 Sum_probs=93.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...++|+|+|.+|+|||||+|+|++..+.+......|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 3678999999999999999999999876432221111111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
... .+.+ +...+.++||||....... ...|+..+|++|+|++..+ .....
T Consensus 46 ----------~~~--~~~~---~~~~~~l~Dt~G~~~~~~~-------------~~~~~~~~d~~i~v~d~~~--~~~~~ 95 (178)
T 2lkc_A 46 ----------GAY--QVTV---NDKKITFLDTPGHEAFTTM-------------RARGAQVTDIVILVVAADD--GVMPQ 95 (178)
T ss_dssp ----------CCC--EEEE---TTEEEEESCCCSSSSSSCS-------------CCSSCCCCCEEEEEEETTC--CCCHH
T ss_pred ----------eEE--EEEe---CCceEEEEECCCCHHHHHH-------------HHHHHhhCCEEEEEEECCC--CCcHH
Confidence 111 1111 1235789999997664322 3467889999999986443 23455
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCC-cHHHHHcCc-ccccC----CCeEEEEeCChhhhhccCCHH
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGK-SYRLK----FPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~-~~~l~----~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.+..++.+...+.++++|+||+|+..... ...+.+... ..... ..|+.+++..+.+++.+...+
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 56666666666889999999999986421 222222211 11112 235555555556655544433
No 37
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.49 E-value=4.5e-14 Score=123.54 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=72.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 42 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI----------------------------------------- 42 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE-----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE-----------------------------------------
Confidence 489999999999999999999987532221111110000
Q ss_pred hCCCCCcccccEEEEEecC-CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chH
Q 013120 115 TGRTKQISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSD 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~ 191 (449)
..+... ....+.|+||||..... .+...|++++|++|+|++..+.... ...
T Consensus 43 -------------~~~~~~~~~~~~~l~D~~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T 1g16_A 43 -------------KTVDINGKKVKLQIWDTAGQERFR-------------TITTAYYRGAMGIILVYDITDERTFTNIKQ 96 (170)
T ss_dssp -------------EEEESSSCEEEEEEECCTTGGGTS-------------CCCHHHHTTEEEEEEEEETTCHHHHHTHHH
T ss_pred -------------EEEEECCEEEEEEEEeCCCChhhh-------------hhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 001111 12358999999965532 2366889999999999876543211 122
Q ss_pred HHHHHHHhCCCCCceEEEeccccccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
.+..+......+.++++|+||+|+..
T Consensus 97 ~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 97 WFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHhcCCCCcEEEEEECccCCc
Confidence 33334444445789999999999943
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=126.92 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|..|+|||||+|+|++..+.+....+.+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~------------------------------------------ 63 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF------------------------------------------ 63 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE------------------------------------------
Confidence 34799999999999999999999765221111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~ 191 (449)
....+.+ ......+.|+||||.... ..+...|++++|++|+|++..+.... . ..
T Consensus 64 ----------~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 64 ----------KIKTVEL-RGKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPK 119 (192)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 0001111 111236899999996542 56678899999999999876543211 1 22
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..++.....+.++++|+||+|+...
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccc
Confidence 234555566668899999999998753
No 39
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.48 E-value=2.2e-14 Score=125.63 Aligned_cols=118 Identities=21% Similarity=0.207 Sum_probs=68.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+.+....+.+......
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~---------------------------------------- 46 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK---------------------------------------- 46 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEE----------------------------------------
Confidence 5899999999999999999998765222111111100000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~ 192 (449)
.+.+ ......+.++||||.... ..+...|++++|++|+|++..+.+... ...
T Consensus 47 ------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 100 (170)
T 1z08_A 47 ------------KLNI-GGKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAILVYDITDEDSFQKVKNW 100 (170)
T ss_dssp ------------EEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 0001 011235889999996543 344567889999999998755432111 112
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+..++...+.+.++++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 101 VKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCCeEEEEEECcccccc
Confidence 22233333346889999999999753
No 40
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.48 E-value=3.9e-14 Score=123.66 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=58.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+++|.+|+|||||+|+|+|..+-+....+.+.+...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS---------------------------------------- 41 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEE----------------------------------------
Confidence 3589999999999999999999876532222111111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
+ ........+.++||||.... +.+...|++.+|++|+|++..+.+.. ....
T Consensus 42 --------------~-~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~ 92 (166)
T 3q72_A 42 --------------I-VVDGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVYSVTDKGSF-EKAS 92 (166)
T ss_dssp --------------E-EETTEEEEEEEEECC----------------------------CCEEEEEEETTCHHHH-HHHH
T ss_pred --------------E-EECCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEEECCCHHHH-HHHH
Confidence 0 01112235789999997653 45577889999999999876543211 1111
Q ss_pred HHHH----HhCCCCCceEEEeccccccCCC
Q 013120 194 KISR----EVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 194 ~l~~----~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+.. .....+.++++|+||+|+.+..
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred HHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 1222 2223478999999999997543
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.48 E-value=3.9e-14 Score=123.92 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=74.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|+|..+.+.... |... ...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~-~~~--------------------------------------- 44 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINP--TIGA-SFM--------------------------------------- 44 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCC--CCSE-EEE---------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceeE-EEE---------------------------------------
Confidence 4899999999999999999999875322111 1000 000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~ 192 (449)
...+.+ ......+.++||||.... ..+...|++++|++|+|++..+..... ...
T Consensus 45 ----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 100 (170)
T 1z0j_A 45 ----------TKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred ----------EEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHHH
Confidence 000000 111235899999998653 345678999999999998755432111 122
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+..+........++++|+||+|+.+.
T Consensus 101 ~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 101 VRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHhCCCCCcEEEEEECCccccc
Confidence 23344444557789999999999754
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=8.6e-14 Score=126.02 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+.+......+ +....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~------------------------------------ 47 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFKV------------------------------------ 47 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS---EEEEE------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeEEE------------------------------------
Confidence 346899999999999999999999875322111100 00000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
..+.+ ......+.|+||||.... ..+...|++++|++|+|++..+..... .
T Consensus 48 -------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 48 -------------KTIYR-NDKRIKLQIWDTAGLERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQ 100 (203)
T ss_dssp -------------EEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTGGGCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCeEEEEEEEECCCchhh-------------cchHHHhhcCCCEEEEEEECcCHHHHHHHH
Confidence 00000 111236899999998653 566888999999999998755432110 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+..+......+.++++|+||+|+...
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 1222333334457899999999999754
No 43
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.48 E-value=3.1e-14 Score=135.51 Aligned_cols=150 Identities=21% Similarity=0.310 Sum_probs=93.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.+.|+++|.+|+|||||+|+|+|..........+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 35899999999999999999999763211111111111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~ 191 (449)
....+.. ...+.+|||||..+.... . .-+.++..|+. ++|++|+|++..+. ..
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~~----~---~~e~v~~~~~~~~~~d~vi~V~D~t~~----e~ 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSPY----S---PEAKVARDYLLSQRADSILNVVDATNL----ER 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSCS----S---HHHHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCCC----C---hHHHHHHHHHhcCCCCEEEEEecCCch----Hh
Confidence 1111222 457999999999875422 1 11456778876 69999999876542 23
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCC---cHHHHHcCcccccCCCeEEEEeCChhhhhccCCH
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGT---DAADILEGKSYRLKFPWIGVVNRSQADINKNVDM 254 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (449)
.+.+..++...+.++++|+||+|+..... +...+. ..++.+++.++.+.+.+++.+...
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YHLGVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HHcCCCEEEEEccCCCCHHHHHHH
Confidence 34455555556899999999999864321 222211 223456777777777766654443
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.48 E-value=5.8e-14 Score=123.88 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+.+.. ...+.......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~------------------------------------- 55 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTR------------------------------------- 55 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEE-------------------------------------
Confidence 3468999999999999999999998752211 11111110000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
.+.+ ......+.|+||||.... ..+...|++++|++|+|++..+..... .
T Consensus 56 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 56 --------------IIEV-SGQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (179)
T ss_dssp --------------EEEE-TTEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEEEEEeCcCHHHHHHHH
Confidence 0111 111235899999996542 456788999999999998765432111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+..+......+.++++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2223344445457899999999999753
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.48 E-value=4.8e-14 Score=122.99 Aligned_cols=70 Identities=24% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc-hHHHH-HHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIK-ISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~-~~~~~-l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...|++++|++|+|++..+... .. ...+. +.+.....+.++++|+||
T Consensus 51 ~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1c1y_A 51 CMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117 (167)
T ss_dssp EEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEEC
T ss_pred EEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEEC
Confidence 35899999997653 3456788999999999987554211 11 11222 333334557899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 118 ~Dl~~~ 123 (167)
T 1c1y_A 118 CDLEDE 123 (167)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 999753
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=125.30 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|..|+|||||+|+|++..+ +....+++.......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 54 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 54 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 446899999999999999999998775 222222221111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
+.+ ......+.|+||||.... ..+...|+..+|++|+|++..+.+... .
T Consensus 55 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (206)
T 2bov_A 55 ---------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 105 (206)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 001 111236889999997653 566788999999999998755422110 1
Q ss_pred HHHH-HHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIK-ISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~-l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+. +.......+.++++|+||+|+...
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 1112 233333457899999999999753
No 47
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=1.3e-13 Score=140.24 Aligned_cols=130 Identities=15% Similarity=0.264 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+++|.+|+|||||+|+|+|..+..++ ..|
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-----~~~----------------------------------------- 207 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-----NVA----------------------------------------- 207 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-----CCC-----------------------------------------
Confidence 4579999999999999999999998753222 111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|.+...... .+.+ +...+.||||||+.+.....+ .++......+..|++.+|++|+|++..+ .. +.+.
T Consensus 208 ---gtT~d~~~~--~~~~---~~~~~~l~DT~G~~~~~~~~~--~~e~~~~~~~~~~~~~ad~~llv~D~~~-~~-s~~~ 275 (436)
T 2hjg_A 208 ---GTTRDAVDT--SFTY---NQQEFVIVDTAGMRKKGKVYE--TTEKYSVLRALKAIDRSEVVAVVLDGEE-GI-IEQD 275 (436)
T ss_dssp ---------CCE--EEEE---TTEEEEETTHHHHTCBTTBCC--CCSHHHHHHHHHHHHHCSEEEEEEETTT-CC-CHHH
T ss_pred ---CceeeeeEE--EEEE---CCeEEEEEECCCcCcCccccc--hHHHHHHHHHHHHHHhCCEEEEEEcCCc-CC-cHHH
Confidence 111111111 1111 123589999999866443211 1222111224568899999999887544 23 3344
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGT 220 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~ 220 (449)
..++..+...+.++++|+||+|+.+...
T Consensus 276 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 276 KRIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCcch
Confidence 5566666666899999999999986543
No 48
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.47 E-value=1.5e-13 Score=122.82 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCC-CCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP-TGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~-~~~rti~VltK 212 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+... ...+..+..... .+.++++|+||
T Consensus 70 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 70 IHLQLWDTAGLERF-------------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEEECCSGGG-------------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 36899999998553 567889999999999998765432111 112222222222 57899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 137 ~Dl~~~ 142 (195)
T 3bc1_A 137 SDLEDQ 142 (195)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 999753
No 49
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.47 E-value=7.3e-14 Score=125.85 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC-CCCceEEEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP-TGERTFGVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~-~~~rti~VltK~D 214 (449)
..+.||||||.... ..+...|++.+|++|+|++..+.. .......+...+.. .+.++++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 45899999996553 234778999999999998765432 11222222222221 2489999999999
No 50
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.47 E-value=2e-13 Score=135.17 Aligned_cols=128 Identities=26% Similarity=0.378 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..+|.|+++|.+|||||||+|+|+|..+...+...+|+-|+.-
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~------------------------------------- 219 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY------------------------------------- 219 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE-------------------------------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE-------------------------------------
Confidence 3578899999999999999999999875222222233323111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc--ccc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LAT 189 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d--~~~ 189 (449)
.+.+ ++ ..+.++||||+... .|.+..+.++. +..++..+|.++++++..+.+ ...
T Consensus 220 ---------------~i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~-tl~~~~~aD~il~VvD~s~~~~~~~~ 276 (364)
T 2qtf_A 220 ---------------AIPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFV-TLSEAKYSDALILVIDSTFSENLLIE 276 (364)
T ss_dssp ---------------EEEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHH-HHHGGGGSSEEEEEEETTSCHHHHHH
T ss_pred ---------------EEEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCcchHHH
Confidence 1112 12 35789999998652 13335555544 456789999999988755432 111
Q ss_pred --hHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 190 --SDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 190 --~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.....+++.+...+.++++|.||+|+...+
T Consensus 277 ~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 277 TLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 112445666665678999999999998654
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=9.3e-14 Score=126.61 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=89.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|.+++|||||+|+|++..+.+......+......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 60 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK-------------------------------------- 60 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEE--------------------------------------
Confidence 457999999999999999999998875332211111111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~ 190 (449)
.+.+. .....+.|+||||.... ..+...|++.+|++|+|++..+.... . .
T Consensus 61 --------------~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 61 --------------TVDIN-GKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIK 112 (213)
T ss_dssp --------------EEEET-TEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 01110 01135899999997653 23367889999999999876542211 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
..+..+....+.+.++++|+||+|+........+. .......+..|+.+++..+.+++.....+.
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHH-HHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 23334444445578999999999994332211111 100112234566666666555554444433
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.47 E-value=7e-14 Score=124.50 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|.+|+|||||+|+|++..+.+....+.+......
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 50 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK-------------------------------------- 50 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE--------------------------------------
Confidence 346899999999999999999998775322211111000000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
.+.+ ......+.|+||||.... ..+...|++++|++|+|++..+.+... .
T Consensus 51 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 51 --------------IINV-GGKYVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNALT 102 (186)
T ss_dssp --------------EEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 0001 011135899999996552 566888999999999998765422111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
..+..+......+.++++|+||+|+..
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccccc
Confidence 222333444456789999999999964
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.47 E-value=9.2e-14 Score=142.18 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
...|.|+++|.+|+|||||+|+|+|..+- .+...|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-----~v~~~~---------------------------------------- 55 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-----IVEDTP---------------------------------------- 55 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-----ccCCCC----------------------------------------
Confidence 45799999999999999999999997652 111111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
| ++.+.....+.. ....+.+|||||+.... ....+.++..+..|++.+|++|++++... . .+..
T Consensus 56 ----g----~t~~~~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~VvD~~~-~-~~~~ 119 (456)
T 4dcu_A 56 ----G----VTRDRIYSSAEW-LNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVNGRE-G-VTAA 119 (456)
T ss_dssp -------------CEEEECTT-CSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEESSS-C-SCHH
T ss_pred ----C----cceeEEEEEEEE-CCceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCCEEEEEEeCCC-C-CChH
Confidence 1 111111111111 23479999999987422 23677888899999999999999987432 2 3444
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
...+++.+...+.++++|+||+|+.+.
T Consensus 120 d~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 120 DEEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHHHHHHHHHcCCCEEEEEECccchhh
Confidence 556778888789999999999998754
No 54
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.46 E-value=4.6e-14 Score=143.61 Aligned_cols=157 Identities=21% Similarity=0.304 Sum_probs=91.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.|.|++||.+|+|||||+|+|+|..+ ..+...|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~------------------------------------------ 35 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP------------------------------------------ 35 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCC------------------------------------------
Confidence 58999999999999999999999764 1222222
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
|.+ .+.....+. -....+.||||||+.... .++...+...+..|++++|++|+|++..+ .. +....
T Consensus 36 --g~T----~d~~~~~~~-~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvD~~~-~~-~~~d~ 101 (436)
T 2hjg_A 36 --GVT----RDRIYSSAE-WLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVNGRE-GV-TAADE 101 (436)
T ss_dssp -----------CEEEECT-TCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEETTT-CS-CHHHH
T ss_pred --CCc----cceEEEEEE-ECCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEeCCC-CC-CHHHH
Confidence 100 111111111 123479999999997432 12667788889999999999999987543 22 23345
Q ss_pred HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCC-CeEEEEeCChhhhhccCCHHH
Q 013120 194 KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKF-PWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 194 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~ 256 (449)
.+++.+...+.++++|+||+|+.....+..+ ...+++ .++.+++..+.++..+.+.+.
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~-----~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEMRANIYD-----FYSLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC-----CCCS-----SGGGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCccchhhHHH-----HHHcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 5777777778999999999998754322111 123343 356677776666665554443
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=4e-14 Score=127.29 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=47.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||.... ..+...|++.+|++|+|++..+.+... ...+..++...+.+.++++|+||+
T Consensus 72 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 72 HKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138 (192)
T ss_dssp EEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 36899999996553 344678899999999998765432111 122333344445578999999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+.+
T Consensus 139 Dl~~ 142 (192)
T 2fg5_A 139 DLSD 142 (192)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9975
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.46 E-value=1.2e-13 Score=122.18 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|..|+|||||+|+|++..+.+ ....++.......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~------------------------------------- 49 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTKI------------------------------------- 49 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEEEE-------------------------------------
Confidence 34689999999999999999999986522 2122222111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
+.+ ......+.|+||||..... .+...|++++|++|+|++..+.+... .
T Consensus 50 ---------------~~~-~~~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 50 ---------------CSV-DGIPARLDILDTAGQEEFG-------------AMREQYMRAGHGFLLVFAINDRQSFNEVG 100 (181)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTTTS-------------CCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCchhhH-------------HHHHHHHhhCCEEEEEEeCCCHHHHHHHH
Confidence 000 0012358899999976542 33567889999999998755421111 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAI-KISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~-~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+ .+.+.....+.++++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 111 2334445667899999999999753
No 57
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=7.5e-14 Score=121.97 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=72.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+.+......+... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~--------------------------------------- 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF---L--------------------------------------- 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE---E---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---E---------------------------------------
Confidence 3799999999999999999998875322211111000 0
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA-- 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~-- 192 (449)
...+.+ ......+.++||||.... ..+...|++++|++|+|++..+... ....
T Consensus 42 ----------~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~ 96 (170)
T 1ek0_A 42 ----------TQRVTI-NEHTVKFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYDVTKPQS-FIKARH 96 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHH-HHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEecCChHH-HHHHHH
Confidence 000001 111235899999996543 3457789999999999987654211 1122
Q ss_pred -HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 -IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 -~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+..+......+.++++|+||+|+...
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 97 WVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 22223333457889999999999754
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.46 E-value=5.4e-14 Score=128.94 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=66.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||..... .+...|+.++|++|+|++..+.... ....+..+....+.+.++++|+||+
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 358999999976543 2355788999999999876543211 1122344444445578999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (449)
|+........+.........+..|+.+++.++.+++.....+....
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9976432212222111223345688888887777766655554443
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.46 E-value=6.8e-14 Score=122.62 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+|+|.+|+|||||+|+|++..+... .+|....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~---------------------------------------- 42 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIGFN---------------------------------------- 42 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCccc----------------------------------------
Confidence 446899999999999999999998765211 1111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.. .+.+ ....+.++||||.... ..+...|++++|++|+|++..+..-.....
T Consensus 43 ----------~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 94 (171)
T 1upt_A 43 ----------VE--TVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISK 94 (171)
T ss_dssp ----------EE--EEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCTTHHHHH
T ss_pred ----------eE--EEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 0111 1346899999998653 334678899999999998765432111111
Q ss_pred HHHHHHhCC---CCCceEEEeccccccCCC
Q 013120 193 IKISREVDP---TGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 193 ~~l~~~~~~---~~~rti~VltK~D~~~~~ 219 (449)
..+...+.. .+.++++|+||+|+....
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 122222222 478999999999997653
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=124.93 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|.+|+|||||+|+|+|..+.+......|......
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 49 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR-------------------------------------- 49 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEE--------------------------------------
Confidence 557999999999999999999999875322111111111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.+.+ ......+.++||||..... .+...|++++|++|+|++..+.. .....
T Consensus 50 --------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 100 (181)
T 3tw8_B 50 --------------TVEI-NGEKVKLQIWDTAGQERFR-------------TITSTYYRGTHGVIVVYDVTSAE-SFVNV 100 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEEETTGGGCS-------------SCCGGGGTTCSEEEEEEETTCHH-HHHHH
T ss_pred --------------EEEE-CCEEEEEEEEcCCCchhhh-------------hhHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 0001 0111358999999965532 23557899999999998765421 11111
Q ss_pred HHHHHHhC--CCCCceEEEeccccccCC
Q 013120 193 IKISREVD--PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~--~~~~rti~VltK~D~~~~ 218 (449)
..+...+. ....++++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 101 KRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 12222221 126789999999998753
No 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=1.1e-13 Score=125.75 Aligned_cols=119 Identities=21% Similarity=0.323 Sum_probs=75.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|..|+|||||+|+|++..+ +....++.......
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 65 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMI--------------------------------------- 65 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEE---------------------------------------
Confidence 45899999999999999999998765 22221111000000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~~ 191 (449)
..+.+. .....+.|+||||.... ..+...|++++|++|+|++..+.+.. ...
T Consensus 66 ------------~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~ 119 (201)
T 2ew1_A 66 ------------KTVEIN-GEKVKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLPE 119 (201)
T ss_dssp ------------EEEEET-TEEEEEEEEEECCSGGG-------------HHHHGGGSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 001110 01235899999996542 56688899999999999875543211 123
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..++.....+.++++|+||+|+...
T Consensus 120 ~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 120 WLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 334444555567899999999999743
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.45 E-value=5.6e-14 Score=124.02 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=72.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|..|+|||||+|+|++..+.+......+......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---------------------------------------- 54 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence 4799999999999999999998765322211111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc-hHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~-~~~ 192 (449)
.+.+ ......+.|+||||.... ..+...|++++|++|+|++..+... .. ...
T Consensus 55 ------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 55 ------------TMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp ------------EEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred ------------EEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 0001 011235899999996543 3346788999999999987554211 11 122
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+..+....+.+.++++|+||+|+.+.
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCCcEEEEEECCccccc
Confidence 22223333457889999999999754
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.45 E-value=1.3e-13 Score=123.34 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|.+|+|||||+|+|++..+.+......+ . ...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~-~~~-------------------------------------- 60 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--I-DFK-------------------------------------- 60 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--C-EEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--E-EEE--------------------------------------
Confidence 45899999999999999999999875322111110 0 000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
...+.+ ......+.|+||||..... .+...|++++|++|+|++..+.+... ..
T Consensus 61 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 61 -----------VKTVYR-HDKRIKLQIWDTAGQERYR-------------TITTAYYRGAMGFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECCSCCSSC-------------CSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEeCCCcHHHh-------------hhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 000001 1112368999999976542 23568899999999998765432111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..+......+.++++|+||+|+...
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 223334444457899999999999753
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.45 E-value=1.3e-13 Score=122.84 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=82.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+.+.. ..++.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCC-CTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCchheEEEE---------------------------------------
Confidence 37999999999999999999987753222 22221111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~ 192 (449)
+ ........+.|+||||.... ..+...|+..+|++|+|++..+.+... ...
T Consensus 45 -------------~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 45 -------------V-VIDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp -------------E-EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -------------E-EECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 0 00111234789999996653 334678899999999998765421111 112
Q ss_pred HH-HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 193 IK-ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 193 ~~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
+. +.......+.++++|+||+|+......... ........+..|+.+++..+.+++.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQ-AQDLARSYGIPFIETSAKTRQGVDD 155 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHH-HHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccccCHHH-HHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 22 223334457899999999999754322111 1111112234566555554444443
No 65
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.45 E-value=1.5e-13 Score=121.60 Aligned_cols=118 Identities=16% Similarity=0.220 Sum_probs=73.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+.+....+.+. .
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~------------------------------------------- 48 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-A------------------------------------------- 48 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC-S-------------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee-E-------------------------------------------
Confidence 48999999999999999999988753221111000 0
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD--- 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~--- 191 (449)
+. ...+.+ ......+.|+||||.... ..+...|++++|++|+|++..+.. ....
T Consensus 49 ------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 105 (181)
T 2efe_B 49 ------FF--SQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFDVTNQA-SFERAKK 105 (181)
T ss_dssp ------EE--EEEEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHH-HHHHHHH
T ss_pred ------EE--EEEEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEECCCHH-HHHHHHH
Confidence 00 000001 111236899999996543 344678899999999998754421 1122
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+..+......+.++++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 106 WVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 2222333333477899999999997543
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.44 E-value=1.9e-13 Score=124.05 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=73.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|.+|+|||||+|+|++..+. ....+.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~------------------------------------------ 44 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVD------------------------------------------ 44 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccce------------------------------------------
Confidence 468999999999999999999997752 2111110000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
+. ...+.+ ......+.|+||||..... .+...|++++|++|+|++..+.+... ..
T Consensus 45 -------~~--~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~vilv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 45 -------FK--IKTVEL-DGKTVKLQIWDTAGQERFR-------------TITSSYYRGSHGIIIVYDVTDQESFNGVKM 101 (206)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEECCTTTTTTT-------------CCCGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------eE--EEEEEE-CCEEEEEEEEeCCChHHHH-------------HHHHHhccCCCEEEEEEECcCHHHHHHHHH
Confidence 00 000111 0112368999999976542 23567899999999998765432111 11
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..+......+.++++|+||+|+...
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 102 WLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 223333444457899999999999764
No 67
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=121.48 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.++|+|+|.+|+|||||+|+|+|..+-+....+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~-------------------------------------------- 39 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED-------------------------------------------- 39 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--------------------------------------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--------------------------------------------
Confidence 468999999999999999999998753221111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
+ ....+.+. .....+.++||||..... ...+...|++.+|++|+|++..+... .....
T Consensus 40 -------~--~~~~~~~~-~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~ 97 (175)
T 2nzj_A 40 -------V--YERTLTVD-GEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADRGS-FESAS 97 (175)
T ss_dssp -------E--EEEEEEET-TEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHH-HHHHH
T ss_pred -------e--eEEEEEEC-CEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCHHH-HHHHH
Confidence 0 00001111 112357899999986521 13456678899999999987554221 11111
Q ss_pred HH---HHHh-CCCCCceEEEeccccccCC
Q 013120 194 KI---SREV-DPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 194 ~l---~~~~-~~~~~rti~VltK~D~~~~ 218 (449)
.+ +... ...+.++++|+||+|+.+.
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 22 2222 2347899999999999754
No 68
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.44 E-value=1.9e-13 Score=122.64 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|..|+|||||+|+|++..+.+....+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 58 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 58 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee------------------------------------------
Confidence 34799999999999999999998775332211111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
.. ..+.+. .....+.|+||||..... .+...|++++|++|+|++..+.+... ..
T Consensus 59 --------~~--~~~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 59 --------GA--RMVNID-GKQIKLQIWDTAGQESFR-------------SITRSYYRGAAGALLVYDITRRETFNHLTS 114 (191)
T ss_dssp --------EE--EEEEET-TEEEEEEEECCTTGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred --------EE--EEEEEC-CEEEEEEEEECCCchhhh-------------hhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 00 001110 112368999999966532 23668899999999998765432111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccccccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
.+..+......+.++++|+||+|+..
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCC
Confidence 22333344445789999999999975
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.44 E-value=2.8e-13 Score=120.36 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+ +....+++.... ...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~~------------------------------------ 58 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LKH------------------------------------ 58 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EEE------------------------------------
Confidence 345899999999999999999998765 222222221111 000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--ch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~ 190 (449)
+ ........+.++||||..... .+...|++++|++|+|++..+.... ..
T Consensus 59 ---------------~-~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 59 ---------------T-EIDNQWAILDVLDTAGQEEFS-------------AMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp ---------------E-EETTEEEEEEEEECCSCGGGC-------------SSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---------------E-EeCCcEEEEEEEECCCchhhH-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 0 001111247789999976532 3366889999999999876542111 01
Q ss_pred HHHH-HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeC-Chhhhhcc
Q 013120 191 DAIK-ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNR-SQADINKN 251 (449)
Q Consensus 191 ~~~~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~-s~~~~~~~ 251 (449)
..+. +.+.....+.++++|+||+|+.+......+.........+..|+.+++. .+.+++..
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 1222 3333455678999999999987533211111111112234567777766 55444433
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.44 E-value=1.9e-13 Score=120.61 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHh-C---CCCCceEEE
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-D---PTGERTFGV 209 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~-~---~~~~rti~V 209 (449)
..+.|+||||.... ..+...|++.+|++|+|++..+..... ...+..+... . ..+.++++|
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 56 VTMQIWDTAGQERF-------------RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp EEEEEEECCCCGGG-------------HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred EEEEEEeCCCchhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 35899999996542 566778999999999998755432111 1112222222 1 256799999
Q ss_pred eccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 210 LTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 210 ltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
+||+|+........+..+-........|+.+++..+.+++..
T Consensus 123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp EECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred EECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 999999743322211111000122345666666555554443
No 71
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.44 E-value=4.5e-14 Score=134.49 Aligned_cols=152 Identities=21% Similarity=0.298 Sum_probs=93.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcc-cccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..+.|+++|++|+|||||+|+|+|..+ +.+.-+ +|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~---------------------------------------- 40 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK---------------------------------------- 40 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe----------------------------------------
Confidence 356899999999999999999999865 333211 11111
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLAT 189 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~ 189 (449)
.... +.. ....+.||||||+.+..... .. +.++..|+ .++|++|+|+++.+.
T Consensus 41 ------------~~~~--~~~-~~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v~D~~~~---- 94 (271)
T 3k53_A 41 ------------KEGI--MEY-REKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNADVIVDIVDSTCL---- 94 (271)
T ss_dssp ------------EEEE--EEE-TTEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCSEEEEEEEGGGH----
T ss_pred ------------eEEE--EEE-CCceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCcEEEEEecCCcc----
Confidence 0001 111 22358999999998754321 11 34567777 689999999876652
Q ss_pred hHHHHHHHHhCCCC-CceEEEeccccccCCC---CcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 190 SDAIKISREVDPTG-ERTFGVLTKIDLMDKG---TDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 190 ~~~~~l~~~~~~~~-~rti~VltK~D~~~~~---~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
...+.+..++...+ .|+++|+||+|+.... .+...+ ...++.+++.++.+.+.+++.....+
T Consensus 95 ~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i 160 (271)
T 3k53_A 95 MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMI 160 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHH
Confidence 23444444444445 8999999999976421 122221 12345667777766666655544443
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.1e-13 Score=121.19 Aligned_cols=69 Identities=20% Similarity=0.139 Sum_probs=46.5
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHHHHHHhCC--CCCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVDP--TGERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~l~~~~~~--~~~rti~VltK 212 (449)
.+.++||||..+. ..+...|+..+|++|+|++..+.... . ...+..+..... .+.++++|+||
T Consensus 52 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 52 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 5899999997653 46678899999999999876542211 1 122222333321 36899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 119 ~Dl~~~ 124 (172)
T 2erx_A 119 CDESPS 124 (172)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 998754
No 73
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.43 E-value=1.3e-13 Score=123.35 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+.+......+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 57 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF----------------------------------------- 57 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-----------------------------------------
Confidence 345899999999999999999998765322111111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHH-HHHHHHhcCCCeEEEEEecCCCccc--c
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIE-NMVRSYIEKPNCIILAISPANQDLA--T 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~-~~~~~yi~~~d~iIl~v~~a~~d~~--~ 189 (449)
....+.+ ......+.|+||||..+. . .+...|++++|++|+|++..+.... .
T Consensus 58 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 58 -----------RERAVDI-DGERIKIQLWDTAGQERF-------------RKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEECCCSHHH-------------HTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -----------EEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 0000111 011236899999996442 3 5678899999999999876542110 1
Q ss_pred hHHHH-HHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCCh
Q 013120 190 SDAIK-ISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQ 245 (449)
Q Consensus 190 ~~~~~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 245 (449)
...+. +.+.....+.++++|+||+|+........+.........+..|+.+++.++
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 12222 233333557899999999999754221111111111123345666666555
No 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=6.7e-14 Score=125.66 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+.+......+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 59 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGID------------------------------------------ 59 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTT------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeE------------------------------------------
Confidence 45689999999999999999999876522211100000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc--ch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA--TS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~--~~ 190 (449)
.....+.+ ......+.|+||||.... ..+...|++++|++|+|++..+.+.. ..
T Consensus 60 ----------~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 115 (191)
T 3dz8_A 60 ----------FKVKTVYR-HEKRVKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQ 115 (191)
T ss_dssp ----------EEEEEEEE-TTTTEEEEEECHHHHHHC-------------HHHHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ----------EEEEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHHHccCCEEEEEEECcCHHHHHHHH
Confidence 00001111 112345899999995432 56788999999999999876542211 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+..+......+.++++|+||+|+...
T Consensus 116 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 116 DWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 2333444445567899999999998643
No 75
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.43 E-value=1.3e-13 Score=120.74 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHH-HHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK-ISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~-l~~~~~~~~~rti~VltK 212 (449)
..+.++||||..... ..+...|++.+|++|+|++..+.+... ...+. +.......+.++++|+||
T Consensus 51 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 51 VTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 357899999987632 124556788899999998765422111 11222 222223347899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 119 ~Dl~~~ 124 (169)
T 3q85_A 119 SDLARS 124 (169)
T ss_dssp TTCGGG
T ss_pred cchhhc
Confidence 998743
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.43 E-value=1.4e-13 Score=120.15 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...|++++|++|+|++..+.+... ...+..+.... .+.++++|+||+
T Consensus 54 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~ 119 (168)
T 1z2a_A 54 VRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKI 119 (168)
T ss_dssp EEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECG
T ss_pred EEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 36899999996543 233678899999999998765432111 11122222222 368999999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+...
T Consensus 120 Dl~~~ 124 (168)
T 1z2a_A 120 DLLDD 124 (168)
T ss_dssp GGGGG
T ss_pred ccCcc
Confidence 99753
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.43 E-value=2.1e-13 Score=124.93 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC----CCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP----TGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~----~~~rti~Vlt 211 (449)
..+.||||||... ...+...|++++|++|+|++..+.+ .......+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLMFDLTSQQ-SFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESHHH-------------HHHHHHHHHTTCCEEEEEEETTCHH-HHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCcHh-------------HHhHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 3589999999433 3567889999999999998755421 11222334444443 4678999999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|+|+...
T Consensus 150 K~Dl~~~ 156 (217)
T 2f7s_A 150 KADLPDQ 156 (217)
T ss_dssp CTTCGGG
T ss_pred CCccccc
Confidence 9999753
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.43 E-value=2.9e-13 Score=117.49 Aligned_cols=147 Identities=14% Similarity=0.207 Sum_probs=83.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~----------------------------------------- 42 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFVDECD-PTIEDSYRK----------------------------------------- 42 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE-----------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccccC-CccceEEEE-----------------------------------------
Confidence 79999999999999999999876532211 111110000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~ 193 (449)
.+.+ ......+.++||||.... ..+...|+..+|++|++++..+..... ...+
T Consensus 43 -----------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 97 (166)
T 2ce2_X 43 -----------QVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97 (166)
T ss_dssp -----------EEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHH
T ss_pred -----------EEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0001 111235789999997653 345678899999999998755321110 1112
Q ss_pred HHHH-HhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 194 KISR-EVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 194 ~l~~-~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
..+. .....+.++++|+||+|+........+ ........+.+++.++..++.+++.
T Consensus 98 ~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 98 EQIKRVKDSDDVPMVLVGNKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp HHHHHHHTCSCCCEEEEEECTTCSCCCSCHHH-HHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred HHHHHhcCCCCCcEEEEEEchhhhhcccCHHH-HHHHHHHcCCeEEEecCCCCCCHHH
Confidence 2222 223347899999999998864322111 1111112334566666655544443
No 79
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=123.03 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=48.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+.. . ...+..+......+.++++|+||+
T Consensus 78 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 78 VKLQIWDTAGQERF-------------RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp EEEEEECCTTCGGG-------------HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 36899999997653 56788999999999999975542211 1 122233333344578999999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 145 Dl~~ 148 (201)
T 2hup_A 145 DLSE 148 (201)
T ss_dssp TCGG
T ss_pred cccc
Confidence 9975
No 80
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=4.5e-13 Score=119.67 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+|+|..|+|||||+|+|++..+... .|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~----------------------------------------- 46 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-------SP----------------------------------------- 46 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-------EC-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcC-------cC-----------------------------------------
Confidence 346999999999999999999998765210 11
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+.++... .+.+ +...+.++||||..+. +.+...|++++|++|+|++..+.+-. ...
T Consensus 47 -----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~ 102 (187)
T 1zj6_A 47 -----TIGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRERI-SVT 102 (187)
T ss_dssp -----CSCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTTTH-HHH
T ss_pred -----CCccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHHH-HHH
Confidence 0001111 1111 2356899999998653 23467889999999999986553211 222
Q ss_pred HHHHHHh-C---CCCCceEEEeccccccCC
Q 013120 193 IKISREV-D---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~-~---~~~~rti~VltK~D~~~~ 218 (449)
..+...+ . ..+.++++|+||+|+...
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 2222222 2 247899999999999764
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.43 E-value=3.4e-13 Score=117.37 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=47.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh-C---CCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~-~---~~~~rti~Vlt 211 (449)
..+.++||||.... +.+...|++++|++|+|++..+.+- -.........+ . ..+.++++|+|
T Consensus 44 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 44 ISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRER-VNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp CEEEEEECCCCGGG-------------HHHHHHHTTTCSEEEEEEETTCGGG-HHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEEcCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHH-HHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 56899999998652 5667889999999999987654321 12222222222 2 23789999999
Q ss_pred cccccCC
Q 013120 212 KIDLMDK 218 (449)
Q Consensus 212 K~D~~~~ 218 (449)
|+|+...
T Consensus 110 K~Dl~~~ 116 (164)
T 1r8s_A 110 KQDLPNA 116 (164)
T ss_dssp CTTSTTC
T ss_pred CcCCcCC
Confidence 9999754
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=122.88 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|+|...++....+ |....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~~~~---------------------------------------- 58 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIGFS---------------------------------------- 58 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CSSEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-cccee----------------------------------------
Confidence 4458999999999999999999997632322221 11110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.. . +.. +...+.|+||||.... +.+...|++++|++|+|++..+.+.. ...
T Consensus 59 ----------~~--~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~ 109 (190)
T 2h57_A 59 ----------IE--K--FKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSDRLRM-VVA 109 (190)
T ss_dssp ----------EE--E--EEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTCHHHH-HHH
T ss_pred ----------EE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHH-HHH
Confidence 00 0 111 1357899999997653 34466889999999999875542211 111
Q ss_pred HH----HHHHhCC--CCCceEEEeccccccCC
Q 013120 193 IK----ISREVDP--TGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~----l~~~~~~--~~~rti~VltK~D~~~~ 218 (449)
.. +.+.... .+.++++|+||+|+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 110 KEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 11 2222121 47899999999999764
No 83
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.42 E-value=2e-13 Score=119.23 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=45.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.++||||.... ..+...|++++|++|+|++..+..... ...+..+........++++|.||+
T Consensus 55 ~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 121 (170)
T 1r2q_A 55 VKFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 35899999997653 345778899999999998765432111 111222223333467889999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+...
T Consensus 122 Dl~~~ 126 (170)
T 1r2q_A 122 DLANK 126 (170)
T ss_dssp GGGGG
T ss_pred cCccc
Confidence 98753
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.42 E-value=3.5e-13 Score=121.33 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|..|+|||||+|+|++..+......+++. .
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~----------------------------------------- 53 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-Y----------------------------------------- 53 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-E-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-e-----------------------------------------
Confidence 5568999999999999999999998763212111111 0
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
... .+. .....+.|+||||.... ..+...|++++|++|+|++..+.+-. ...
T Consensus 54 ---------~~~----~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~-~~~ 105 (199)
T 4bas_A 54 ---------NVE----TFE-KGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHLRL-CVV 105 (199)
T ss_dssp ---------EEE----EEE-ETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGGGH-HHH
T ss_pred ---------eEE----EEE-eCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHHHH-HHH
Confidence 000 011 12346899999998654 34466889999999999986653311 122
Q ss_pred HHHHHHhCC-----------CCCceEEEeccccccCCC
Q 013120 193 IKISREVDP-----------TGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 193 ~~l~~~~~~-----------~~~rti~VltK~D~~~~~ 219 (449)
......+.. .+.++++|+||+|+....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 122222221 278999999999998653
No 85
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.42 E-value=2.1e-13 Score=120.94 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=87.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.++|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 46 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKL-------------------------------------- 46 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEE--------------------------------------
Confidence 35899999999999999999997654 222222222111000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--H
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~ 191 (449)
+.+ ......+.|+||||..... .+...|++++|++|+|++..+.+.... .
T Consensus 47 --------------~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (181)
T 3t5g_A 47 --------------ITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIKV 98 (181)
T ss_dssp --------------EEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 000 0112357899999987643 224578899999999987654221111 1
Q ss_pred HH-HHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 192 AI-KISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 192 ~~-~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.+ .+.+.....+.++++|+||+|+........+.........+..|+.+++..+.+++..+..+
T Consensus 99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 99 IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 11 23344444578999999999986543221111111112234457777776666665544433
No 86
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=123.57 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||.... ..+...|++.+|++|+|++..+.... . ...+..++.....+.++++|+||+
T Consensus 77 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 143 (199)
T 2p5s_A 77 TVLQLWDTAGQERF-------------RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143 (199)
T ss_dssp EEEEEEECTTCTTC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECG
T ss_pred EEEEEEECCCCcch-------------hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 35899999997553 56688899999999999875542211 1 122334444455578999999999
Q ss_pred ccc
Q 013120 214 DLM 216 (449)
Q Consensus 214 D~~ 216 (449)
|+.
T Consensus 144 Dl~ 146 (199)
T 2p5s_A 144 DIR 146 (199)
T ss_dssp GGH
T ss_pred ccc
Confidence 986
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.42 E-value=1.2e-13 Score=121.00 Aligned_cols=117 Identities=24% Similarity=0.412 Sum_probs=72.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
+.|+++|.+|+|||||+|+|+|..+ +.+. .|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~-----~~------------------------------------------- 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGN-----WP------------------------------------------- 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccC-----CC-------------------------------------------
Confidence 4799999999999999999999764 2221 11
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+.+.. ...-.+.+ +...+.++||||..+.... . ..+.+...|+. ++|+++++++..+. ...
T Consensus 35 -~~t~~--~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~~----~~~ 97 (165)
T 2wji_A 35 -GVTVE--KKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATAL----ERN 97 (165)
T ss_dssp ---CCC--CCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTCH----HHH
T ss_pred -Cccee--eeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCch----hHh
Confidence 00000 00011111 1246899999998765321 1 22456677775 89999988876542 122
Q ss_pred HHHHHHhCCCCCceEEEeccccccC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
..+..++...+.++++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhcc
Confidence 2333444335789999999999863
No 88
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=124.27 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=87.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|.+|+|||||+|+|++..+. ....+++.... ...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~------------------------------------ 64 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTY-SKI------------------------------------ 64 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEE-EEE------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEE-EEE------------------------------------
Confidence 3457999999999999999999998753 22111111110 000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+ ........+.|+||||..... .+...|++.+|++|+|++..+.+. ....
T Consensus 65 ---------------~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s-~~~~ 114 (201)
T 3oes_A 65 ---------------V-TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLHS-FQVI 114 (201)
T ss_dssp ---------------E-C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHHH-HHHH
T ss_pred ---------------E-EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHHH-HHHH
Confidence 0 001122357899999976543 235678999999999987654221 1122
Q ss_pred HHHHHHh----CCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 193 IKISREV----DPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 193 ~~l~~~~----~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
..+...+ ...+.++++|+||+|+..................+..|+.+++..+.+++..+..+
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 2233333 23367999999999987543211111111112233456666666666665544433
No 89
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.41 E-value=5.5e-13 Score=118.96 Aligned_cols=123 Identities=21% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+++|+|+|.+|+|||||+|+|+|..+ +.+.. .+|..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 46899999999999999999999875 32211 112111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC-CC---eEEEEEecCCCccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK-PN---CIILAISPANQDLA 188 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~-~d---~iIl~v~~a~~d~~ 188 (449)
..+.+ ..+.++||||+...... +....+....+...|++. ++ .++.++++...+-.
T Consensus 39 -------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~ 98 (190)
T 2cxx_A 39 -------------IEIEW-----KNHKIIDMPGFGFMMGL--PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98 (190)
T ss_dssp -------------EEEEE-----TTEEEEECCCBSCCTTS--CHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHH
T ss_pred -------------EEEec-----CCEEEEECCCccccccC--CHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhH
Confidence 11111 17899999997653321 222355667777777765 44 55444443211000
Q ss_pred ---------chHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 189 ---------TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 189 ---------~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
......+.+.+...+.++++|+||+|+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 99 IKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred HHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 001122334444457899999999999865
No 90
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.41 E-value=1.7e-13 Score=120.97 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=56.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hHHHHHHHHhCC--CCCc-eEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SDAIKISREVDP--TGER-TFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~~~~l~~~~~~--~~~r-ti~Vl 210 (449)
..+.++||||.... ..+...|++++|++|+|++..+.+.. . ...+..+....+ .+.+ +++|+
T Consensus 56 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~ 122 (178)
T 2hxs_A 56 VTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122 (178)
T ss_dssp EEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEE
Confidence 46899999997653 23467889999999999876543211 1 112222222211 1344 78999
Q ss_pred ccccccCCCC----cHHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 211 TKIDLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 211 tK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
||+|+.+... +..++.+ ..+..++.+++.++.+++...
T Consensus 123 nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 123 NKIDLEHMRTIKPEKHLRFCQ----ENGFSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp ECGGGGGGCSSCHHHHHHHHH----HHTCEEEEECTTTCTTHHHHH
T ss_pred EccccccccccCHHHHHHHHH----HcCCcEEEEeCCCCCCHHHHH
Confidence 9999975322 1112211 223456666665555544433
No 91
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=2.4e-13 Score=123.23 Aligned_cols=120 Identities=17% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|.+|+|||||+|+|++..+.+......+......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 48 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-------------------------------------- 48 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE--------------------------------------
Confidence 345899999999999999999999875332211111111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~ 190 (449)
.+.+ ......+.|+||||..... .+...|++++|++|+|++..+.... . .
T Consensus 49 --------------~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (207)
T 1vg8_A 49 --------------EVMV-DDRLVTMQIWDTAGQERFQ-------------SLGVAFYRGADCCVLVFDVTAPNTFKTLD 100 (207)
T ss_dssp --------------EEES-SSCEEEEEEEEECSSGGGS-------------CSCCGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCcHHHH-------------HhHHHHHhCCcEEEEEEECCCHHHHHHHH
Confidence 0000 0112358999999975532 2345788999999999875542211 1 1
Q ss_pred HHHH-HHHHhC---CCCCceEEEeccccccCC
Q 013120 191 DAIK-ISREVD---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~-l~~~~~---~~~~rti~VltK~D~~~~ 218 (449)
..+. +..... ..+.++++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 1111 222221 236799999999999743
No 92
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=123.33 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|..|+|||||+|+|++..+.+....+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~------------------------------------------- 61 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE------------------------------------------- 61 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CC-------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccce-------------------------------------------
Confidence 4589999999999999999999876522111111100
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
+... .+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+..... ..
T Consensus 62 -------~~~~--~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 118 (200)
T 2o52_A 62 -------FGSR--VVNV-GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNSLAA 118 (200)
T ss_dssp -------EEEE--EEEE-TTEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -------eEEE--EEEE-CCeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 0000 1111 111246899999996442 233668899999999998765432111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCCC-cHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKGT-DAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
.+..+......+.++++|+||+|+..... ...+... .....+..|+.+++..+.+++.....+
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 22223333445789999999999964322 1111111 011223456666666655555444433
No 93
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.41 E-value=2.1e-13 Score=120.60 Aligned_cols=151 Identities=11% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|.+|+|||||+|+|++..+.+....+.+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 346899999999999999999998775221111111000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
....+.+.+.....+.|+||||.... ..+...|++++|++|+|++..+..... .
T Consensus 46 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 -----------LTKEVTVDGDKVATMQVWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNASSFENIK 101 (182)
T ss_dssp -----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEEcCCcEEEEEEEECCCChHh-------------hhhhHHHhhcCCEEEEEEECCChHHHHHHH
Confidence 00011111122346899999995442 455678899999999998765432111 1
Q ss_pred HHHH-HHHHh---CCCCCceEEEeccccccCCCCc-----HHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 191 DAIK-ISREV---DPTGERTFGVLTKIDLMDKGTD-----AADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 191 ~~~~-l~~~~---~~~~~rti~VltK~D~~~~~~~-----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
..+. +.... ...+.++++|+||+|+...... ..++.. ......|+.+++.++.+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHH
Confidence 1111 11211 1257899999999998643211 112111 122345666666655554433
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.40 E-value=6.6e-13 Score=118.83 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=72.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+. .... .|.....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~----------------------------------------- 59 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFN-EDMI-PTVGFNM----------------------------------------- 59 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCC-CCCSEEE-----------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCC-CccC-CCCceeE-----------------------------------------
Confidence 47999999999999999999987652 1111 1111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
. . +. .....+.|+||||.... ..+...|++++|++|+|++..+.+.. .....
T Consensus 60 ---------~--~--~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~-~~~~~ 111 (188)
T 1zd9_A 60 ---------R--K--IT-KGNVTIKLWDIGGQPRF-------------RSMWERYCRGVSAIVYMVDAADQEKI-EASKN 111 (188)
T ss_dssp ---------E--E--EE-ETTEEEEEEEECCSHHH-------------HTTHHHHHTTCSEEEEEEETTCGGGH-HHHHH
T ss_pred ---------E--E--EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHccCCEEEEEEECCCHHHH-HHHHH
Confidence 0 0 11 12346899999996542 45577899999999999876543211 22222
Q ss_pred HHH-HhC---CCCCceEEEeccccccCC
Q 013120 195 ISR-EVD---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 195 l~~-~~~---~~~~rti~VltK~D~~~~ 218 (449)
... .+. ..+.++++|+||+|+...
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 222 222 257899999999999764
No 95
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.40 E-value=5.6e-13 Score=118.79 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+|+|.+|+|||||+|++++.. +....+ |...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCcc-----------------------------------------
Confidence 34589999999999999999999876 221111 1111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
... .+.+ +...+.++||||..+. ..+...|++++|++|+|++..+.+- ....
T Consensus 53 ---------~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 104 (186)
T 1ksh_A 53 ---------NIK--TLEH---RGFKLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADRQR-MQDC 104 (186)
T ss_dssp ---------EEE--EEEE---TTEEEEEEEECCSHHH-------------HTTGGGGCTTCSEEEEEEETTCGGG-HHHH
T ss_pred ---------ceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEECcCHHH-HHHH
Confidence 000 1111 2346899999998542 3456788999999999987654321 1222
Q ss_pred HHHHHH-hC---CCCCceEEEeccccccCCC
Q 013120 193 IKISRE-VD---PTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 193 ~~l~~~-~~---~~~~rti~VltK~D~~~~~ 219 (449)
...... +. ..+.++++|+||+|+....
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 222222 22 2478999999999997643
No 96
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.40 E-value=8.4e-14 Score=123.76 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=39.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~---~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.. .... .+..+......+.++++|+||
T Consensus 57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 57 IKLQIWDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCChhh-------------hhhHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 45899999997553 344667899999999998765422 1111 222233333447899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 123 ~Dl~~~ 128 (183)
T 2fu5_C 123 CDVNDK 128 (183)
T ss_dssp --CCSC
T ss_pred ccCCcc
Confidence 999754
No 97
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=7.2e-13 Score=118.72 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=86.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+++|||||+|+|++..+.+....+.+ ......
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~--------------------------------------- 55 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVK--------------------------------------- 55 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EEEEEE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eEEEEE---------------------------------------
Confidence 5899999999999999999999875322111111 000000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+.+ ......+.|+||||..... .+...|++++|++|+|++..+... ......
T Consensus 56 ------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~ 108 (195)
T 1x3s_A 56 ------------TISV-DGNKAKLAIWDTAGQERFR-------------TLTPSYYRGAQGVILVYDVTRRDT-FVKLDN 108 (195)
T ss_dssp ------------EEEE-TTEEEEEEEEEECSSGGGC-------------CSHHHHHTTCCEEEEEEETTCHHH-HHTHHH
T ss_pred ------------EEEE-CCeEEEEEEEeCCCchhhh-------------hhhHHHhccCCEEEEEEECcCHHH-HHHHHH
Confidence 0001 1112358999999976532 336788999999999987554221 111222
Q ss_pred HHHHhC----CCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHH
Q 013120 195 ISREVD----PTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIA 256 (449)
Q Consensus 195 l~~~~~----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (449)
+...+. ..+.++++|+||+|+....-...+... .....+..|+.+++..+.+++.....+.
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-FARKHSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHH-HHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 333333 246789999999999543222111111 0112233456666666566555444433
No 98
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=6e-13 Score=119.87 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+|+|.+|+|||||+|+|++..+.+... +++......
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~--------------------------------------- 67 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-PTLESTYRH--------------------------------------- 67 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEEEE---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccC-CCCCceEEE---------------------------------------
Confidence 3589999999999999999999987532211 111100000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-c-hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-T-SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~-~~ 191 (449)
.+.+ ......+.|+||||... ..+...|++.+|++|+|++..+.+.. . ..
T Consensus 68 -------------~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 119 (196)
T 2atv_A 68 -------------QATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLP 119 (196)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHH
Confidence 0000 11123588999999876 24577889999999999876542211 1 11
Q ss_pred HHHHHHH-hCCCCCceEEEeccccccCC
Q 013120 192 AIKISRE-VDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~-~~~~~~rti~VltK~D~~~~ 218 (449)
.+..+.. ....+.++++|+||+|+.+.
T Consensus 120 ~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 120 LKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 2222222 33457899999999999753
No 99
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.38 E-value=1e-12 Score=117.45 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=65.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~---------------------------------------- 60 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRK---------------------------------------- 60 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccC-CccceEEEE----------------------------------------
Confidence 479999999999999999999876532211 111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD--- 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~--- 191 (449)
.+.+ ......+.||||||.... ..+...|++.+|++|+|++..+.. ....
T Consensus 61 ------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 113 (190)
T 3con_A 61 ------------QVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNSK-SFADINL 113 (190)
T ss_dssp ------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHH-HHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCChHHH-------------HHHHHHhhCcCCEEEEEEECcCHH-HHHHHHH
Confidence 0001 011235889999996543 445678999999999988755422 1111
Q ss_pred HHHHHHH-hCCCCCceEEEeccccccCC
Q 013120 192 AIKISRE-VDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~-~~~~~~rti~VltK~D~~~~ 218 (449)
.+..+.. ....+.++++|+||+|+...
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 1222222 22347899999999998763
No 100
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.38 E-value=1.6e-13 Score=124.33 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCC---CCCceEEEe
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP---TGERTFGVL 210 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~---~~~rti~Vl 210 (449)
..+.|+||||.... ..+...|++++|++|+|++..+..... ...+..+....+ .+.++++|+
T Consensus 73 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 73 VELFLLDTAGSDLY-------------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEETTTTHHH-------------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 46899999998542 566788999999999998765432111 122223333333 578999999
Q ss_pred ccccccC
Q 013120 211 TKIDLMD 217 (449)
Q Consensus 211 tK~D~~~ 217 (449)
||+|+..
T Consensus 140 nK~Dl~~ 146 (208)
T 2yc2_C 140 NKTDLPP 146 (208)
T ss_dssp ECC----
T ss_pred ECcccch
Confidence 9999976
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.37 E-value=4.9e-13 Score=119.59 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+|+|.+|+|||||+|+|++..+.+. .+|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~------------------------------------------ 55 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT---VPTVG------------------------------------------ 55 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE---CSSTT------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc---CCCCc------------------------------------------
Confidence 346899999999999999999998764211 01110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+... .+.+ ....+.++||||..+... +...|++++|++|+|++..+.+-. ...
T Consensus 56 --------~~~~--~~~~---~~~~~~~~Dt~G~~~~~~-------------~~~~~~~~~d~ii~v~d~~~~~s~-~~~ 108 (189)
T 2x77_A 56 --------VNLE--TLQY---KNISFEVWDLGGQTGVRP-------------YWRCYFSDTDAVIYVVDSTDRDRM-GVA 108 (189)
T ss_dssp --------CCEE--EEEE---TTEEEEEEEECCSSSSCC-------------CCSSSSTTCCEEEEEEETTCCTTH-HHH
T ss_pred --------eEEE--EEEE---CCEEEEEEECCCCHhHHH-------------HHHHHhhcCCEEEEEEeCCCHHHH-HHH
Confidence 0000 1111 234689999999865432 245678899999999876543211 222
Q ss_pred HH-HHHHhC---CCCCceEEEeccccccCC
Q 013120 193 IK-ISREVD---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~-l~~~~~---~~~~rti~VltK~D~~~~ 218 (449)
.. +...+. ..+.++++|+||+|+...
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 22 222222 247899999999999764
No 102
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.37 E-value=5.5e-13 Score=134.27 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=95.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..+.|+|+|..|+|||||+|+|+|..+.+.+.. |
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~-----~----------------------------------------- 66 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDY-----A----------------------------------------- 66 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCC-----C-----------------------------------------
Confidence 456899999999999999999999876322211 1
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
|.+. +.....+.......+.||||||+.+....++. . .+.+..|+.++|++|+|++. .. ....
T Consensus 67 ---gtT~----d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-----~-~~~~~~~l~~aD~vllVvD~-~~---~~~~ 129 (423)
T 3qq5_A 67 ---GTTT----DPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-----R-VEKARRVFYRADCGILVTDS-AP---TPYE 129 (423)
T ss_dssp ------C----CCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-----C-HHHHHHHHTSCSEEEEECSS-SC---CHHH
T ss_pred ---Ceee----eeEEEEEEECCCCeEEEEECcCCCcccchhHH-----H-HHHHHHHHhcCCEEEEEEeC-CC---hHHH
Confidence 1110 01111122222236899999999875433211 1 23367889999999998865 22 2233
Q ss_pred HHHHHHhCCCCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
..+..++...+.++++|+||+|+...... +..+......+..++.+++..+.+++.....+...
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34455555558899999999999866543 22222123345577777777777776665554443
No 103
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.36 E-value=7.8e-13 Score=117.54 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+|+|..|+|||||+|+|++..+ .. . . |
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~-~----~----------------------------------------- 51 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VH-T-S----P----------------------------------------- 51 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EE-E-E----C-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-Cc-c-C----C-----------------------------------------
Confidence 345899999999999999999999865 10 0 0 0
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+.++... .+.+ +...+.|+||||.... +.+...|++++|++|+|++..+..- -...
T Consensus 52 -----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s-~~~~ 107 (181)
T 2h17_A 52 -----TIGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRER-ISVT 107 (181)
T ss_dssp -----CSSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCTTT-HHHH
T ss_pred -----cCceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 0011111 1112 2356899999998653 2335688999999999987655321 1222
Q ss_pred HHHH-HHhC---CCCCceEEEeccccccCC
Q 013120 193 IKIS-REVD---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~-~~~~---~~~~rti~VltK~D~~~~ 218 (449)
.... .... ..+.++++|+||+|+...
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 2222 2222 357899999999999764
No 104
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=118.74 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 32 ~~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
....+|+|+|..|+|||||+|++++..+ +....+++.......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------ 60 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAV------------------------------------ 60 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEE------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEE------------------------------------
Confidence 3456899999999999999999998764 322222221111000
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch-
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 190 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~- 190 (449)
+.+ ......+.|+||||..... .+...|+.++|++|+|++..+.+....
T Consensus 61 ----------------~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 61 ----------------VSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp ----------------EEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred ----------------EEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 000 0111357899999987643 225568999999999987654321111
Q ss_pred --HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 --DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 --~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+..++...+ +.++++|+||+|+...
T Consensus 111 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 111 SEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 12222333333 7899999999999753
No 105
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.35 E-value=2.2e-12 Score=114.81 Aligned_cols=115 Identities=20% Similarity=0.277 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+++|.+|+|||||+++|++..+-.. .+|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~---~~t~------------------------------------------- 48 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHI---TPTQ------------------------------------------- 48 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEE---EEET-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcc---cCcC-------------------------------------------
Confidence 456899999999999999999998754100 0010
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
| +... .+.+ +...+.++||||.... +.+...|++++|++|+|++..+.+- ....
T Consensus 49 ---g----~~~~--~~~~---~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~ 102 (181)
T 1fzq_A 49 ---G----FNIK--SVQS---QGFKLNVWDIGGQRKI-------------RPYWRSYFENTDILIYVIDSADRKR-FEET 102 (181)
T ss_dssp ---T----EEEE--EEEE---TTEEEEEEECSSCGGG-------------HHHHHHHHTTCSEEEEEEETTCGGG-HHHH
T ss_pred ---C----eEEE--EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECcCHHH-HHHH
Confidence 1 0000 1111 1346899999997653 4667889999999999987654321 1122
Q ss_pred HHHHHHh----CCCCCceEEEeccccccCCC
Q 013120 193 IKISREV----DPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 193 ~~l~~~~----~~~~~rti~VltK~D~~~~~ 219 (449)
......+ ...+.++++|+||+|+....
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 2222222 23478999999999997643
No 106
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.35 E-value=7.2e-13 Score=122.06 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..++|||||+|+|++..+.+....+.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 48 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV------------------------------------------- 48 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CC-------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc-------------------------------------------
Confidence 3468999999999999999999998752221111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
.+.. ..+.+ ......+.|+||||..... .+...|++.+|++|+|++..+..... .
T Consensus 49 -------~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 49 -------EFAT--RTLEI-EGKRIKAQIWDTAGQERYR-------------AITSAYYRGAVGALIVYDISKSSSYENCN 105 (223)
T ss_dssp -------SEEE--EEEEE-TTEEEEEEEECCTTTTTTT-------------CCCGGGTTTCCEEEEEEC-CCHHHHHHHH
T ss_pred -------eeEE--EEEEE-CCEEEEEEEEECCCccchh-------------hhHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence 0000 01111 1112368999999976542 33567899999999988654422111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
..+..+......+.++++|+||+|+..
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccc
Confidence 122233444445789999999999975
No 107
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.8e-12 Score=114.04 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..+.|+|+|..|+|||||+|+|+|..+.+ ..++..|+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~--------------------------------------- 84 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLS--------------------------------------- 84 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCce---------------------------------------
Confidence 56799999999999999999999986522 111111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC-CCcccchH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a-~~d~~~~~ 191 (449)
+..+ ....+.++||||....... +.......+..+|++|+|++.. +.+. ...
T Consensus 85 -----~~~~------------~~~~~~l~Dt~G~~~~~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~ 137 (193)
T 2ged_A 85 -----AADY------------DGSGVTLVDFPGHVKLRYK---------LSDYLKTRAKFVKGLIFMVDSTVDPKK-LTT 137 (193)
T ss_dssp -------CC------------CCTTCSEEEETTCCBSSCC---------HHHHHHHHGGGEEEEEEEEETTCCHHH-HHH
T ss_pred -----eeee------------cCCeEEEEECCCCchHHHH---------HHHHHHhhcccCCEEEEEEECCCCchh-HHH
Confidence 0000 2357899999999765322 1233344455699999998765 2111 111
Q ss_pred HHHHHHHh-------CCCCCceEEEeccccccCCC
Q 013120 192 AIKISREV-------DPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 192 ~~~l~~~~-------~~~~~rti~VltK~D~~~~~ 219 (449)
.......+ .+.+.++++|+||+|+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 138 TAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 11111111 33578999999999998654
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.35 E-value=3.7e-13 Score=120.09 Aligned_cols=119 Identities=23% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-++|+++|..|+|||||+|+|+|..+.+.....+|..+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~--------------------------------------- 46 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE--------------------------------------- 46 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEE---------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceE---------------------------------------
Confidence 34689999999999999999999976422111111111110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~ 190 (449)
.. +.. +...+.++||||....... . ..+.+...|+. .+++++++++..+ + .
T Consensus 47 -------------~~--~~~-~~~~~~l~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~d~~~--~--~ 99 (188)
T 2wjg_A 47 -------------GE--FEY-NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATA--L--E 99 (188)
T ss_dssp -------------EE--EEE-TTEEEEEEECCCCSCCSSS----S---HHHHHHHHHHHHHCCSEEEEEEEGGG--H--H
T ss_pred -------------EE--EEe-CCcEEEEEECCCcCccccc----c---HHHHHHHHHHhccCCCEEEEEecchh--H--H
Confidence 01 111 1246899999998765321 1 11345666764 5899988887553 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
....+...+...+.++++|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 233344455556789999999999864
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=1.8e-12 Score=114.94 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+|+|.+|+|||||+|+|++..+.+.. .|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t-------------------------------------------- 49 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK---PT-------------------------------------------- 49 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC---SS--------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC---Cc--------------------------------------------
Confidence 3468999999999999999999986541110 00
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.++... .+.+ +...+.++||||..... .+...|++++|++|+|++..+..- ....
T Consensus 50 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 104 (183)
T 1moz_A 50 ------IGFNVE--TLSY---KNLKLNVWDLGGQTSIR-------------PYWRCYYADTAAVIFVVDSTDKDR-MSTA 104 (183)
T ss_dssp ------TTCCEE--EEEE---TTEEEEEEEEC----CC-------------TTGGGTTTTEEEEEEEEETTCTTT-HHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 001111 1111 12568999999987642 235678899999999987654321 1222
Q ss_pred HHHHHHhC----CCCCceEEEeccccccCC
Q 013120 193 IKISREVD----PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~----~~~~rti~VltK~D~~~~ 218 (449)
......+. ..+.++++|+||+|+...
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 22333332 357899999999999764
No 110
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.35 E-value=1e-13 Score=136.03 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=89.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
+|.|+++|.+|||||||||+|++......+...+|..|+.-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 678999999999999999999986531111122333332111
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC---Ccccc-
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---QDLAT- 189 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~---~d~~~- 189 (449)
+..++...++|+||||+........ .+ .....+++..++++|+|++.++ .+...
T Consensus 200 ----------------v~~~~~~~~~l~DtPG~i~~a~~~~--~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 200 ----------------VETDDGRSFVMADLPGLIEGAHQGV--GL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ----------------EECSSSCEEEEEEHHHHHHHTTCTT--TT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred ----------------EEeCCCceEEEecCCCCcccccccc--hh----HHHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 1222234689999999875332211 11 1113344567999999998765 22211
Q ss_pred -hHHHHHHHHhCC--CCCceEEEeccccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHH
Q 013120 190 -SDAIKISREVDP--TGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMI 255 (449)
Q Consensus 190 -~~~~~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (449)
......+..+.+ ...+.++|+||+|+....+...++.+. ......++.+++.+..+++.+...+
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~--l~~~~~v~~iSA~tg~gi~eL~~~l 324 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK--LTDDYPVFPISAVTREGLRELLFEV 324 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH--CCSCCCBCCCSSCCSSTTHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH--hhcCCCEEEEECCCCcCHHHHHHHH
Confidence 112223344443 368999999999997543222222111 1111455666666655555444433
No 111
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=115.85 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=58.2
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc-hHHHHHHHHhCC-CCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISREVDP-TGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~-~~~~~l~~~~~~-~~~rti~VltK~ 213 (449)
.+.++||||..... ..+...|++.+|++|+|++..+... .. ...+..+....+ .+.++++|.||+
T Consensus 73 ~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 73 TLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 57899999986531 2356678999999999987554221 11 122222222222 478999999999
Q ss_pred cccCCCCc-HHHHHcCcccccCCCeEEEEeCChhhhhccC
Q 013120 214 DLMDKGTD-AADILEGKSYRLKFPWIGVVNRSQADINKNV 252 (449)
Q Consensus 214 D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (449)
|+...... ..+.. ......+..|+.+++..+.+++..+
T Consensus 141 Dl~~~~~v~~~~~~-~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 141 DLARSREVSLEEGR-HLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp TCTTTCCSCHHHHH-HHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred hccccCCcCHHHHH-HHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 99754321 11111 0011223456666666655554433
No 112
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.34 E-value=3.1e-13 Score=121.44 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=71.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 63 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHV--------------------------------------- 63 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEE---------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEE---------------------------------------
Confidence 4899999999999999999999875 222221111110000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SD 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~ 191 (449)
+. .......+.|+||||.... ..+...|++++|++|+|++..+..... ..
T Consensus 64 -------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 116 (194)
T 3reg_A 64 -------------MK-YKNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNRTSFDNISTK 116 (194)
T ss_dssp -------------EE-ETTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -------------EE-ECCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCHHHHHHHHHH
Confidence 00 0111234799999996553 234667899999999998755432111 11
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..++... .+.++++|+||+|+.+.
T Consensus 117 ~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 117 WEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 222333332 26899999999999753
No 113
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.34 E-value=6.9e-14 Score=126.49 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+|+|++..+........|....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 71 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 71 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE----------------------------------------
Confidence 3458999999999999999999997652211111111110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~ 190 (449)
.. .+.+ ......+.|+||||..... .+...|++++|++|+|++..+.+... .
T Consensus 72 ----------~~--~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 72 ----------IR--TIEL-DGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp ----------EE--EEEE-TTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred ----------EE--EEEE-CCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 00 0101 1112358999999966543 22557889999999988755432111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCCCC----cHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDKGT----DAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
..+..+......+.++++|+||+|+..... +...+. ...+..|+.+++..+.+++.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA----DSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH----HTTTCCBCCCCC---HHHHH
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH----HHcCCeEEEEECCCCCCHHH
Confidence 222233334444789999999999975432 112221 12234566666555555443
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.2e-12 Score=117.69 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=58.5
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc-hHHHHHHHHhCC--CCCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SDAIKISREVDP--TGERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~-~~~~~l~~~~~~--~~~rti~VltK 212 (449)
.+.|+||||.... ..+...|+..+|++|+|++..+.+. .. ...+..+..+.. .+.++++|+||
T Consensus 57 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 57 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5899999996653 4667788999999999987654211 11 122333333332 26799999999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhcc
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKN 251 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (449)
+|+........+.. ......+..|+.+++..+.+++.+
T Consensus 124 ~Dl~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 124 CDETQREVDTREAQ-AVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp TTCSSCSSCHHHHH-HHHHHHTCEEEECBTTTTBSHHHH
T ss_pred ccCCccccCHHHHH-HHHHHhCCeEEEEecCCCCCHHHH
Confidence 99976432211111 011122345566655555544433
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.34 E-value=3.1e-12 Score=115.27 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..++|||||++.+.|.. .+. . |.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~-~---~~------------------------------------------- 50 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM-SPN-E---TL------------------------------------------- 50 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC-CGG-G---GG-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC-CCc-c---ee-------------------------------------------
Confidence 55689999999999999999999853 221 0 00
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHH---HHHhcCCCeEEEEEecCCCcccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV---RSYIEKPNCIILAISPANQDLAT 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~---~~yi~~~d~iIl~v~~a~~d~~~ 189 (449)
+..+....+...+.......+.|+||||..+... +. ..|++++|++|+|++..+.-...
T Consensus 51 -----~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 112 (196)
T 3llu_A 51 -----FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD-------------PTFDYEMIFRGTGALIYVIDAQDDYMEA 112 (196)
T ss_dssp -----GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC-------------TTCCHHHHHHTCSEEEEEEETTSCCHHH
T ss_pred -----eeccccceeeeeccCCCeeEEEEEECCCCHHHHh-------------hhhhcccccccCCEEEEEEECCCchHHH
Confidence 0111222233333334456899999999765321 23 68899999999999765531011
Q ss_pred -hHHHHHHHHh--CCCCCceEEEeccccccCC
Q 013120 190 -SDAIKISREV--DPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 190 -~~~~~l~~~~--~~~~~rti~VltK~D~~~~ 218 (449)
.....++..+ ...+.++++|.||+|+...
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 1222333333 2347899999999998753
No 116
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=6.1e-13 Score=119.44 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=73.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|..++|||||+++|++..+ +....+++......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 57 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAV---------------------------------------- 57 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE----------------------------------------
Confidence 4899999999999999999998764 32222222111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---D 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~ 191 (449)
.+.+ ......+.|+||||..+.. .+...|++++|++|+|++..+.+.... .
T Consensus 58 ------------~~~~-~~~~~~~~i~D~~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 58 ------------SVTV-GGKQYLLGLYDTAGQEDYD-------------RLRPLSYPMTDVFLICFSVVNPASFQNVKEE 111 (194)
T ss_dssp ------------EEES-SSCEEEEEEECCCCSSSST-------------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred ------------EEEE-CCEEEEEEEEECCCCcchh-------------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 0000 0112358899999987642 345678999999999987654321111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..++...+ +.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 2223333333 7899999999999764
No 117
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.33 E-value=9.2e-13 Score=118.08 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=46.9
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-chH----HHHHHHHh--CCCCCceEEE
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSD----AIKISREV--DPTGERTFGV 209 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-~~~----~~~l~~~~--~~~~~rti~V 209 (449)
.+.|+||||.... ..+...|++++|++|+|++....... +.+ ...++.++ ...+.++++|
T Consensus 75 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv 141 (198)
T 3t1o_A 75 RFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ 141 (198)
T ss_dssp EEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred EEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 5899999997654 45677899999999999876521100 111 12233333 2347899999
Q ss_pred eccccccCC
Q 013120 210 LTKIDLMDK 218 (449)
Q Consensus 210 ltK~D~~~~ 218 (449)
+||+|+...
T Consensus 142 ~NK~Dl~~~ 150 (198)
T 3t1o_A 142 VNKRDLPDA 150 (198)
T ss_dssp EECTTSTTC
T ss_pred EEchhcccc
Confidence 999999764
No 118
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.33 E-value=4.8e-13 Score=121.13 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||||.... ..+...|++++|++|+|++..+..... ......++...+ +.++++|+||
T Consensus 73 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 138 (201)
T 2gco_A 73 VELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNK 138 (201)
T ss_dssp EEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 35899999997553 233556899999999998755422111 112233333333 7899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 139 ~Dl~~~ 144 (201)
T 2gco_A 139 KDLRQD 144 (201)
T ss_dssp GGGTTC
T ss_pred HHhhcC
Confidence 999864
No 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=4.2e-13 Score=122.10 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=45.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||||..... .+...|++++|++|+|++..+.+... ...+..++...+ +.++++|+||
T Consensus 73 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 138 (207)
T 2fv8_A 73 VELALWDTAGQEDYD-------------RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANK 138 (207)
T ss_dssp EEEEEEECTTCTTCT-------------TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEECCCcHHHH-------------HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 358999999976542 33557899999999998755422111 112223333332 6899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 139 ~Dl~~~ 144 (207)
T 2fv8_A 139 KDLRSD 144 (207)
T ss_dssp GGGGGC
T ss_pred hhhhcc
Confidence 999754
No 120
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.33 E-value=1e-12 Score=118.15 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
-.+|+|+|.+|+|||||+|+|++..+.+ ..+|...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~------------------------------------------ 63 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGF------------------------------------------ 63 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTE------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCce------------------------------------------
Confidence 3589999999999999999999876521 0111110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~ 193 (449)
... . +.. ....+.++||||.... +.+...|++++|++|+|++..+.+- -....
T Consensus 64 --------~~~--~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s-~~~~~ 116 (192)
T 2b6h_A 64 --------NVE--T--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRER-VQESA 116 (192)
T ss_dssp --------EEE--E--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGGG-HHHHH
T ss_pred --------eEE--E--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHH-HHHHH
Confidence 000 0 111 2346899999998653 2346788999999999987654321 12222
Q ss_pred HHHHHh-C---CCCCceEEEeccccccCC
Q 013120 194 KISREV-D---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 194 ~l~~~~-~---~~~~rti~VltK~D~~~~ 218 (449)
.....+ . ..+.++++|+||+|+...
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 222222 2 237899999999999754
No 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.33 E-value=3.9e-13 Score=119.44 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=46.0
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.+.++||||.... ..+...|++++|++|+|++..+...... ..+..++...+ +.++++|+||+
T Consensus 54 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 119 (186)
T 1mh1_A 54 NLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKL 119 (186)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECH
T ss_pred EEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcc
Confidence 5789999998654 2335678899999999987654221111 12233333333 78999999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 120 Dl~~~ 124 (186)
T 1mh1_A 120 DLRDD 124 (186)
T ss_dssp HHHTC
T ss_pred ccccc
Confidence 99764
No 122
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=120.00 Aligned_cols=116 Identities=9% Similarity=0.182 Sum_probs=89.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCC---CCCchhHhHHhhhHHHHhhccCccccCC----HHHHHHHHHhcCCCCCCC
Q 013120 328 AGGKLYTIMEICRLFDQIYKEHLDGVR---PGGDKIYYVFDNQLPAALKRLQFDKQLS----MENIRKLITEADGYQPHL 400 (449)
Q Consensus 328 ~~~~~~~l~~~~~~f~~~~~~~i~g~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~g~~p~~ 400 (449)
+.++..+|++.++.|.+.+.+.+.|.. .++.|++..+.+.|..+...++-..... .++|....++++|+.++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 346778999999999999999999986 3567899999998888766554221111 246777788999999888
Q ss_pred CCChHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013120 401 IAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISE 443 (449)
Q Consensus 401 ~~p~~~f~~li~~~~~~~~~P~~~~~~~v~~~l~~~v~~~~~~ 443 (449)
|+|+.+||.||++||++|++||++|++.|+++|.+++.+++..
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~ 125 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIK 125 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988763
No 123
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=117.69 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=67.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|++++..+ +....+++......
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 60 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSS---------------------------------------- 60 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeE----------------------------------------
Confidence 3799999999999999999998764 22211111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
.+.+ ......+.|+||||..... . ...|++.+|++|+|++..+.+. ......
T Consensus 61 ------------~~~~-~~~~~~l~i~Dt~G~~~~~-------------~-~~~~~~~~~~~ilv~d~~~~~s-~~~~~~ 112 (187)
T 3c5c_A 61 ------------EETV-DHQPVHLRVMDTADLDTPR-------------N-CERYLNWAHAFLVVYSVDSRQS-FDSSSS 112 (187)
T ss_dssp ------------EEEE-TTEEEEEEEEECCC---CC-------------C-THHHHTTCSEEEEEEETTCHHH-HHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCCCcch-------------h-HHHHHhhCCEEEEEEECCCHHH-HHHHHH
Confidence 0001 1112358899999976532 1 1368999999999987654221 111112
Q ss_pred HHHHhC------CCCCceEEEeccccccC
Q 013120 195 ISREVD------PTGERTFGVLTKIDLMD 217 (449)
Q Consensus 195 l~~~~~------~~~~rti~VltK~D~~~ 217 (449)
+...+. ..+.++++|.||+|+..
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 222221 14789999999999964
No 124
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.32 E-value=6.9e-12 Score=119.20 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=75.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|..+..+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------- 81 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS------------------------------------- 81 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE-------------------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE-------------------------------------
Confidence 46899999999999999999999886544432 2232222111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh--cCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI--EKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~d~iIl~v~~a~~d~~~~ 190 (449)
+.. ....++||||||+.+... ......+.+..|+ ..+|++|+|++.....+. .
T Consensus 82 -----------------~~~-~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~-~ 136 (270)
T 1h65_A 82 -----------------RSR-AGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD-N 136 (270)
T ss_dssp -----------------EEE-TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCC-H
T ss_pred -----------------Eee-CCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCC-H
Confidence 111 234689999999976532 1122233344554 468999988754433332 2
Q ss_pred HHHHHHHHhC---CC--CCceEEEeccccccCCC
Q 013120 191 DAIKISREVD---PT--GERTFGVLTKIDLMDKG 219 (449)
Q Consensus 191 ~~~~l~~~~~---~~--~~rti~VltK~D~~~~~ 219 (449)
....+++.+. .. ..++++|+||+|+..+.
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 137 LDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2223333332 21 25899999999987543
No 125
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.31 E-value=7.4e-13 Score=121.26 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=58.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+|+|||||+|+|++..+ +....+++......
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 73 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMV---------------------------------------- 73 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEE----------------------------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEE----------------------------------------
Confidence 4799999999999999999998764 32211111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---D 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~ 191 (449)
.+.+. .....+.|+||||.... ..+...|++++|++|+|++..+...... .
T Consensus 74 ------------~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 127 (214)
T 2j1l_A 74 ------------NLQVK-GKPVHLHIWDTAGQDDY-------------DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNR 127 (214)
T ss_dssp ------------EEEET-TEEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHT
T ss_pred ------------EEEEC-CEEEEEEEEECCCchhh-------------hHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 00010 11235889999996543 3456778999999999987554221111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..++... .+.++++|+||+|+...
T Consensus 128 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 128 WYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp HHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred HHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 222233333 36899999999999864
No 126
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.31 E-value=2.7e-12 Score=116.01 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+++|.+|+|||||+++|++..+ +. -.+|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 345899999999999999999998764 11 0011111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.. -.+.+. ...+.++||||.... +.+...|++.+|++|+|++..+.+-. ...
T Consensus 60 ---------~~--~~~~~~---~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~-~~~ 111 (198)
T 1f6b_A 60 ---------TS--EELTIA---GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHERL-LES 111 (198)
T ss_dssp ---------SC--EEEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGGH-HHH
T ss_pred ---------ee--EEEEEC---CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHHHH-HHH
Confidence 00 111111 256899999997653 23466789999999999976543211 112
Q ss_pred HHHHHHh----CCCCCceEEEeccccccC
Q 013120 193 IKISREV----DPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~----~~~~~rti~VltK~D~~~ 217 (449)
......+ ...+.|+++|+||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 234789999999999975
No 127
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.31 E-value=4.4e-12 Score=113.78 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|+++|.+|+|||||++++++..+-. -.+|..+..-
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~---~~~t~~~~~~-------------------------------------- 60 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPTSE-------------------------------------- 60 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCCSCEEE--------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc---cccCCCCCeE--------------------------------------
Confidence 34589999999999999999999876511 1112111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.+.+ +...+.++||||..... .+...|++++|++|+|++..+.+-. ...
T Consensus 61 --------------~~~~---~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~-~~~ 109 (190)
T 1m2o_B 61 --------------ELAI---GNIKFTTFDLGGHIQAR-------------RLWKDYFPEVNGIVFLVDAADPERF-DEA 109 (190)
T ss_dssp --------------EEEE---TTEEEEEEECCCSGGGT-------------TSGGGGCTTCCEEEEEEETTCGGGH-HHH
T ss_pred --------------EEEE---CCEEEEEEECCCCHHHH-------------HHHHHHHhcCCEEEEEEECCChHHH-HHH
Confidence 1111 12468999999987642 3356788999999999876543211 122
Q ss_pred HHHHHHh----CCCCCceEEEeccccccC
Q 013120 193 IKISREV----DPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~----~~~~~rti~VltK~D~~~ 217 (449)
......+ ...+.++++|+||+|+..
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 2222222 234789999999999976
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.31 E-value=1.2e-11 Score=122.50 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccC-cccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..+.|+++|.+|+|||||+|+|+|..+ ..+. ..+|..+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~------------------------------------ 208 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQ------------------------------------ 208 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEE------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEE------------------------------------
Confidence 568999999999999999999999763 2221 12222221110
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc---cc
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---LA 188 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d---~~ 188 (449)
+.. ....+.++||||+....... ...+. ...+..+...+|++++|++..+.. +.
T Consensus 209 ------------------~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 209 ------------------FED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp ------------------EEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHH
T ss_pred ------------------EEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHH
Confidence 111 12358999999997643221 11111 223345556799999998754432 22
Q ss_pred c-hHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 189 T-SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 189 ~-~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
. ...+..+....+ +.++++|+||+|+...
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 1 122222333223 7899999999999754
No 129
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.30 E-value=6.6e-12 Score=114.55 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..++|+|+|.+|+|||||+++|++..+.+... +|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Cccee-----------------------------------------
Confidence 45799999999999999999999877522211 11100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
...+.+.+.....+.|+||||..+.. ..+...|++.+|++|+|++..+..-.....
T Consensus 43 ------------~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 98 (214)
T 2fh5_B 43 ------------SAIYKVNNNRGNSLTLIDLPGHESLR------------FQLLDRFKSSARAVVFVVDSAAFQREVKDV 98 (214)
T ss_dssp ------------EEEEECSSTTCCEEEEEECCCCHHHH------------HHHHHHHGGGEEEEEEEEETTTHHHHHHHH
T ss_pred ------------eEEEEecCCCccEEEEEECCCChhHH------------HHHHHHHHhhCCEEEEEEECCCcCHHHHHH
Confidence 00011111113468999999986521 226778999999999998765411111122
Q ss_pred HHHHHH------hCCCCCceEEEeccccccCCC
Q 013120 193 IKISRE------VDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 193 ~~l~~~------~~~~~~rti~VltK~D~~~~~ 219 (449)
...... ....+.++++|+||+|+....
T Consensus 99 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 99 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222211 234468999999999998654
No 130
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.29 E-value=2.6e-12 Score=118.03 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=61.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||+|..+. +.+...|++.++++|+|++..+.+-.. ..++..++...+...++++|.||+
T Consensus 62 v~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 35889999998764 456889999999999998755432111 223333444444578999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
|+.+......+-........+..|+.+++.++.+++.
T Consensus 129 Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred chHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 9875322111101111122344567666666555443
No 131
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.29 E-value=1.3e-11 Score=116.72 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-.+|+|+|..|+|||||+|+|+|..+.+.+.. .+|..+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------- 78 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------- 78 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE-------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE-------------------------------------
Confidence 35899999999999999999999876333321 1222221111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~ 190 (449)
+.. +...++||||||+.+.... .....+.+..++. .+|++|+|+......+...
T Consensus 79 -----------------~~~-~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~ 134 (262)
T 3def_A 79 -----------------RTM-GGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDEL 134 (262)
T ss_dssp -----------------EEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHH
T ss_pred -----------------EEE-CCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHH
Confidence 111 2236899999999875422 2233344555553 5788888865443333222
Q ss_pred --HHHHHHHHhCCC--CCceEEEeccccccCC
Q 013120 191 --DAIKISREVDPT--GERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 --~~~~l~~~~~~~--~~rti~VltK~D~~~~ 218 (449)
..++.++..... ..++++|+||+|+...
T Consensus 135 ~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 135 DKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 333333333222 2489999999998744
No 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.29 E-value=4.7e-13 Score=122.03 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=72.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+++|||||++++++..+ +....+++......
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 48 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA---------------------------------------- 48 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEE----------------------------------------
Confidence 5899999999999999999998764 32221111111100
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---D 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~ 191 (449)
.+.+ ......+.|+||||..... .+...|++++|++|+|++..+.+.... .
T Consensus 49 ------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~ 102 (212)
T 2j0v_A 49 ------------NVAV-DGQIVNLGLWDTAGQEDYS-------------RLRPLSYRGADIFVLAFSLISKASYENVLKK 102 (212)
T ss_dssp ------------EEEC-SSCEEEEEEECCCCCCCCC-------------C--CGGGTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred ------------EEEE-CCEEEEEEEEECCCcHHHH-------------HHHHhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 0001 1112368999999986642 235578999999999987554321111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+..++...+ +.++++|+||+|+...
T Consensus 103 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 103 WMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 2233333333 7899999999998754
No 133
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.95 E-value=2.7e-13 Score=122.98 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCC--CCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPT--GERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~--~~rti~VltK~ 213 (449)
..+.|+||||.... ..+...|++++|++|+|++..+..........+...+... +.++++|+||+
T Consensus 78 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 144 (204)
T 3th5_A 78 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
Confidence 35779999997653 3556778999999999987554321111111233333322 68899999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+...
T Consensus 145 Dl~~~ 149 (204)
T 3th5_A 145 DLRDD 149 (204)
Confidence 99754
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.28 E-value=1.3e-11 Score=125.48 Aligned_cols=129 Identities=20% Similarity=0.312 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCc-ccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHH
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDET 111 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (449)
..++|+++|.+|+|||||+|+|+|..+..++.- .+|+-|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~--------------------------------------- 219 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV--------------------------------------- 219 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C---------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce---------------------------------------
Confidence 457999999999999999999999864212111 1222221
Q ss_pred hhhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 013120 112 DRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (449)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~ 191 (449)
.. .+.+ +..++.++||||+.+..... +..........+..++..+|+++++++... .. +..
T Consensus 220 -----------~~--~i~~---~g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vllv~d~~~-~~-~~~ 280 (439)
T 1mky_A 220 -----------DD--EVFI---DGRKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVVIVLDATQ-GI-TRQ 280 (439)
T ss_dssp -----------CE--EEEE---TTEEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEETTT-CC-CHH
T ss_pred -----------EE--EEEE---CCEEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEEEEEeCCC-CC-CHH
Confidence 11 1111 12357899999985432110 000000001124578889999988887543 22 233
Q ss_pred HHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
...++..+...+.++++|+||+|+.+..
T Consensus 281 ~~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 281 DQRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHHcCCCEEEEEECccCCCch
Confidence 3445555555689999999999998643
No 135
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.28 E-value=1.1e-12 Score=120.09 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+|+|..|+|||||+++|++..+. ....+++......
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~-------------------------------------- 66 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTA-------------------------------------- 66 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEE--------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEE--------------------------------------
Confidence 3458999999999999999999987752 2111111100000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--- 189 (449)
.+.+ ......+.|+||||.... ..+...|++++|++|+|++..+..-..
T Consensus 67 --------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 67 --------------CLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp --------------EEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 0001 011235889999997654 234667899999999999765532111
Q ss_pred hHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 190 SDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 190 ~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..++..++...+ +.++++|.||+|+...
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 223334444433 7899999999999753
No 136
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.28 E-value=3e-13 Score=119.80 Aligned_cols=69 Identities=28% Similarity=0.253 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.|+||||.... ..+...|++++|++|+|++..+.+.... ..+..++...+ +.++++|+||
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 121 (182)
T 3bwd_D 56 VNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTK 121 (182)
T ss_dssp --CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 45789999997653 2345678999999999987654321111 12233333333 7899999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+...
T Consensus 122 ~Dl~~~ 127 (182)
T 3bwd_D 122 LDLRDD 127 (182)
T ss_dssp HHHHTC
T ss_pred hhhhcC
Confidence 999754
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.27 E-value=9e-13 Score=119.75 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=46.1
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~---~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.+.|+||||.... ..+...|++++|++|+|++..+...... ..+..++... .+.++++|+||+
T Consensus 79 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 144 (204)
T 4gzl_A 79 NLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144 (204)
T ss_dssp EEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECH
T ss_pred EEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEech
Confidence 4679999998654 2346678999999999987554321111 1222333333 378999999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|+....
T Consensus 145 Dl~~~~ 150 (204)
T 4gzl_A 145 DLRDDK 150 (204)
T ss_dssp HHHTCH
T ss_pred hhccch
Confidence 998653
No 138
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.26 E-value=1.2e-11 Score=109.10 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=67.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|++|+|||||+|++++..+-+. . +|-.....
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~-~t~~~~~~---------------------------------------- 44 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVL--E-KTESEQYK---------------------------------------- 44 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCC--S-SCSSSEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc--C-CCcceeEE----------------------------------------
Confidence 4799999999999999999999876321 1 11111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
..+.+ ......+.|+||||... ..|++++|++|+|++..+.. .......
T Consensus 45 -----------~~~~~-~~~~~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~-s~~~~~~ 93 (178)
T 2iwr_A 45 -----------KEMLV-DGQTHLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDEN-SFQAVSR 93 (178)
T ss_dssp -----------EEEEE-TTEEEEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHH-HHHHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHH-HHHHHHH
Confidence 00111 11123578999999653 35788999999998755432 1111111
Q ss_pred ---HHHHhC---CCCCceEEEecccccc
Q 013120 195 ---ISREVD---PTGERTFGVLTKIDLM 216 (449)
Q Consensus 195 ---l~~~~~---~~~~rti~VltK~D~~ 216 (449)
.+..+. ..+.++++|.||+|+.
T Consensus 94 ~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 94 LHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 233332 2467999999999985
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.26 E-value=2.9e-12 Score=114.17 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=70.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|.+++|||||+|+|++..+ +.... +|.......
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~~~~--------------------------------------- 46 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTA--------------------------------------- 46 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeEEE---------------------------------------
Confidence 5899999999999999999998765 22111 111110000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SD 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~ 191 (449)
.+.+ ......+.|+||||..... .+...|++++|++|+|++..+..-.. ..
T Consensus 47 ------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 100 (184)
T 1m7b_A 47 ------------SFEI-DTQRIELSLWDTSGSPYYD-------------NVRPLSYPDSDAVLICFDISRPETLDSVLKK 100 (184)
T ss_dssp ------------EEEC-SSCEEEEEEEEECCSGGGT-------------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred ------------EEEE-CCEEEEEEEEECCCChhhh-------------hhHHhhcCCCcEEEEEEECCCHHHHHHHHHH
Confidence 0000 1112358999999976532 23456889999999998755422111 11
Q ss_pred HHHHHHHhCCCCCceEEEeccccccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
.+..++...+ +.++++|.||+|+..
T Consensus 101 ~~~~i~~~~~-~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 101 WKGEIQEFCP-NTKMLLVGCKSDLRT 125 (184)
T ss_dssp HHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHCC-CCCEEEEEEcchhhc
Confidence 1222333333 689999999999975
No 140
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.26 E-value=1.3e-12 Score=119.94 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=62.4
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..+.|+||||..... .+...|++++|++|+|++..+..... ...+..+.... .+.++++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFG-------------GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEEeCCChHHHh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 358999999965542 33567899999999998765422111 12222333332 267999999999
Q ss_pred cccCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 214 DLMDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
|+....... + ........+..|+.+++.++.+++.....+...
T Consensus 130 Dl~~~~~~~-~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 130 DIKDRKVKA-K-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp TSSSCSSCG-G-GCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred ccccccccH-H-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 997543211 1 111112234456766666666665555444433
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=120.52 Aligned_cols=113 Identities=18% Similarity=0.243 Sum_probs=70.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhhh
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRET 115 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (449)
+|+|+|.+|+|||||+|+|++..+.. . .+|......
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~-~--~pT~~~~~~----------------------------------------- 202 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVE----------------------------------------- 202 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEE-E--EEETTEEEE-----------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCC-c--ccccceEEE-----------------------------------------
Confidence 79999999999999999999877521 1 111111000
Q ss_pred CCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 013120 116 GRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (449)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l 195 (449)
. +.. ....++|+||||.... ..+...|++.+|++|+|++..+.+........+
T Consensus 203 -----------~--~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 203 -----------T--VEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp -----------E--EEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred -----------E--Eec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 0 111 2246899999995543 334778999999999999865433222222223
Q ss_pred HHHhCC---CCCceEEEeccccccCCC
Q 013120 196 SREVDP---TGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 196 ~~~~~~---~~~rti~VltK~D~~~~~ 219 (449)
...+.. .+.++++|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 333332 378999999999998643
No 142
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.24 E-value=1.3e-11 Score=119.61 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHHhC--CCCCceEEEe
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVD--PTGERTFGVL 210 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~--~~~~l~~~~~--~~~~rti~Vl 210 (449)
...+.+|||||..+. .......+...|++++|++|+|++..+...... .....+..+. ..+.++++|+
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 456899999997652 111223567889999999999998665321111 1112222221 2368999999
Q ss_pred ccccccC
Q 013120 211 TKIDLMD 217 (449)
Q Consensus 211 tK~D~~~ 217 (449)
||+|+..
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 143
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.1e-11 Score=122.40 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-.++|++||.||+|||||+|+|+|......+...||+-|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 45689999999999999999999987544444557776643221
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.. ....++|+||||+...+..+. ..-+-+.+.++++|+|++|++..+ .....+.
T Consensus 115 ------------------~~-~~~~i~l~D~pGl~~~a~~~~------~~g~~~l~~i~~ad~il~vvD~~~-p~~~~~~ 168 (376)
T 4a9a_A 115 ------------------RY-KGAKIQMLDLPGIIDGAKDGR------GRGKQVIAVARTCNLLFIILDVNK-PLHHKQI 168 (376)
T ss_dssp ------------------EE-TTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEEEEETTS-HHHHHHH
T ss_pred ------------------Ee-CCcEEEEEeCCCccCCchhhh------HHHHHHHHHHHhcCccccccccCc-cHHHHHH
Confidence 11 123589999999987654321 112335667889999988886442 2221111
Q ss_pred HH-HHHHhCC--CCCceEEEecccccc
Q 013120 193 IK-ISREVDP--TGERTFGVLTKIDLM 216 (449)
Q Consensus 193 ~~-l~~~~~~--~~~rti~VltK~D~~ 216 (449)
+. -+..++. ...+.++|+||.|.-
T Consensus 169 i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 169 IEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 11 1222221 256788999999963
No 144
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=3.2e-11 Score=110.24 Aligned_cols=114 Identities=21% Similarity=0.384 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..+.|+|+|.+|+|||||+|+|++..+.+. ..+..|+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~------------------------------------- 50 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA------------------------------------- 50 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-------------------------------------
Confidence 578999999999999999999999875221 1122221100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcC----CCeEEEEEecC-CCcc
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK----PNCIILAISPA-NQDL 187 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~----~d~iIl~v~~a-~~d~ 187 (449)
.+ ....+.++||||.... +.+...|+.. +|++|+|++.. +.+.
T Consensus 51 -------~~------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~ 98 (218)
T 1nrj_B 51 -------DY------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKK 98 (218)
T ss_dssp -------TG------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTTC
T ss_pred -------Ee------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChHH
Confidence 00 2347899999999663 2345555555 89999998866 2222
Q ss_pred cchHHHHHHHHh-------CCCCCceEEEeccccccCCC
Q 013120 188 ATSDAIKISREV-------DPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 188 ~~~~~~~l~~~~-------~~~~~rti~VltK~D~~~~~ 219 (449)
. .........+ .+.+.|+++|+||+|+....
T Consensus 99 ~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 99 L-TTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp C-HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred H-HHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 1 1222222211 34578999999999998654
No 145
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.24 E-value=3.6e-12 Score=116.01 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=70.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+|+|..|+|||||+|+|++..+ +... .+|......
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~-~~t~~~~~~---------------------------------------- 66 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCF-PENY-VPTVFENYT---------------------------------------- 66 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSC-CCCSEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCc-CCccceeEE----------------------------------------
Confidence 4899999999999999999999775 2211 111111000
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SD 191 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~---~~ 191 (449)
..+.+ ......+.|+||||..... .+...|++++|++|+|++..+..-.. ..
T Consensus 67 -----------~~~~~-~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~ 121 (205)
T 1gwn_A 67 -----------ASFEI-DTQRIELSLWDTSGSPYYD-------------NVRPLSYPDSDAVLICFDISRPETLDSVLKK 121 (205)
T ss_dssp -----------EEEES-SSSEEEEEEEEECCSGGGT-------------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEE-CCEEEEEEEEeCCCcHhhh-------------HHHHhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 00000 1112358999999976532 23456889999999998765422111 11
Q ss_pred HHHHHHHhCCCCCceEEEeccccccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
++..++...+ +.++++|.||+|+..
T Consensus 122 ~~~~i~~~~~-~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 122 WKGEIQEFCP-NTKMLLVGCKSDLRT 146 (205)
T ss_dssp HHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHCC-CCCEEEEEechhhcc
Confidence 2222333333 689999999999975
No 146
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=1.9e-12 Score=129.54 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEE
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 73 (449)
+|++||.+|+|||||+|+|+|..........+|+.|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 68999999999999999999987311222235665543
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.22 E-value=1.3e-11 Score=110.06 Aligned_cols=98 Identities=9% Similarity=0.040 Sum_probs=54.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC----CCCceEEEecc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP----TGERTFGVLTK 212 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~----~~~rti~VltK 212 (449)
.+.|+||||.... . |++.+|++|+|++..+.. .-.....+...+.. .+.++++|.||
T Consensus 68 ~l~i~Dt~G~~~~--------------~----~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 128 (184)
T 3ihw_A 68 LLLIRDEGGPPEL--------------Q----FAAWVDAVVFVFSLEDEI-SFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128 (184)
T ss_dssp EEEEEECSSSCCH--------------H----HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHTTSCGGGSCEEEEEEC
T ss_pred EEEEEECCCChhh--------------h----eecCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5788999998652 1 888899999998755422 11222223333322 36789999999
Q ss_pred ccccCCCCc--HHHHHcCcccccC-CCeEEEEeCChhhhhccCC
Q 013120 213 IDLMDKGTD--AADILEGKSYRLK-FPWIGVVNRSQADINKNVD 253 (449)
Q Consensus 213 ~D~~~~~~~--~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~ 253 (449)
+|+...... ..+.........+ ..|+.+++..+.+++..+.
T Consensus 129 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHH
Confidence 998532211 0111111111222 4566666666555544433
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.20 E-value=5.1e-11 Score=123.14 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=73.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|+++|.+|+|||||+|+|++..+. . ..+|..+..-.
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~-~--~~~T~~~~~~~--------------------------------------- 360 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSV-T--TIPTVGFNVET--------------------------------------- 360 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-C--CCCCSSEEEEE---------------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-C--cCCccceeEEE---------------------------------------
Confidence 47999999999999999999997641 1 11222221111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~ 194 (449)
+.. ....+.|+||||.... +.+...|++++|++|+|++..+.+-.......
T Consensus 361 ---------------~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~ 411 (497)
T 3lvq_E 361 ---------------VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQE 411 (497)
T ss_dssp ---------------EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHH
T ss_pred ---------------EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcchhHHHHHHHH
Confidence 111 2346899999997654 23467899999999999986653211111111
Q ss_pred HHHHhC---CCCCceEEEeccccccCC
Q 013120 195 ISREVD---PTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 195 l~~~~~---~~~~rti~VltK~D~~~~ 218 (449)
+...+. ..+.++|+|+||+|+...
T Consensus 412 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 412 LHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 222222 247899999999999754
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.18 E-value=3.5e-12 Score=131.74 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..|.|+++|+.++|||||+++|++..+.....+..|...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 468999999999999999999998764222222222111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.... +..+....++||||||..+.. .+...+++.+|++|||++... ....+.
T Consensus 42 ---------~~~~----v~~~~g~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~vILVVDa~d--g~~~qt 93 (537)
T 3izy_P 42 ---------GAFL----VSLPSGEKITFLDTPGHAAFS-------------AMRARGTQVTDIVILVVAADD--GVMKQT 93 (537)
T ss_dssp ---------TSCC----BCSSCSSCCBCEECSSSCCTT-------------TSBBSSSBSBSSCEEECBSSS--CCCHHH
T ss_pred ---------eEEE----EEeCCCCEEEEEECCChHHHH-------------HHHHHHHccCCEEEEEEECCC--CccHHH
Confidence 1110 122234479999999976543 234567889999999886443 334555
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
...+..+...+.|+++|+||+|+.+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHHcCCcEEEEEeccccccc
Confidence 66666666678899999999999753
No 150
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=2.5e-11 Score=111.00 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=42.5
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cch-HHHHHHHHh-CCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATS-DAIKISREV-DPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~~-~~~~l~~~~-~~~~~rti~VltK~ 213 (449)
.+.++||+|.... .+.+...|++.+|++|+|++..+.+- ... .....+... ...+.++++|.||+
T Consensus 88 ~l~~~Dt~g~~~~------------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 88 TIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEECCTTTTHH------------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEeecCCCcch------------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 4689999986431 13455667888999999887543211 111 111112222 23468999999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 156 DL~~ 159 (211)
T 2g3y_A 156 DLVR 159 (211)
T ss_dssp TCGG
T ss_pred HHhc
Confidence 9874
No 151
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4e-11 Score=126.44 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=80.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+++|.+++|||||+|+|++... .+..+.- ..+.......++...++..+...... +
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~--e 226 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNE--E 226 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHH--H
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchh--h
Confidence 355899999999999999999998642 1111000 00000000011111122223332222 2
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL----- 187 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~----- 187 (449)
+..|.+..+... . +.. ....++||||||..+. ...+..++..+|++|+||++.+..+
T Consensus 227 ~~~GiTid~~~~--~--~~~-~~~~~~iiDTPG~e~f-------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 227 RERGVTVSICTS--H--FST-HRANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFD 288 (611)
T ss_dssp HHTTTCCSCSCC--E--EEC-SSCEEEEEECCSSSCH-------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCC
T ss_pred hhCCeeEeeeeE--E--Eec-CCceEEEEECCCCccc-------------HHHHHHHHhhcCceEEEEECCCCcccccch
Confidence 233443332222 2 222 2457999999998653 4556778899999999987553111
Q ss_pred cchHHHHHHHHhCCCC-CceEEEeccccccC
Q 013120 188 ATSDAIKISREVDPTG-ERTFGVLTKIDLMD 217 (449)
Q Consensus 188 ~~~~~~~l~~~~~~~~-~rti~VltK~D~~~ 217 (449)
........+..+...+ .++|+|+||+|+.+
T Consensus 289 ~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 1123333333333344 45999999999986
No 152
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.17 E-value=9.6e-11 Score=122.18 Aligned_cols=108 Identities=6% Similarity=0.065 Sum_probs=63.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..+.++||||..... .+...|++++|++|+|++..+. -.....+..++...+ +.++++|+||+|+
T Consensus 98 ~~~~i~Dt~G~e~~~-------------~~~~~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~~~-~~pvilV~NK~Dl 162 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMH-------------ASHQFFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKYGG-KSPVIVVMNKIDE 162 (535)
T ss_dssp CEEEEECCCSCCTTT-------------TTCHHHHHSSEEEEEEECGGGG-GGHHHHHHHHHHHSS-SCCEEEEECCTTT
T ss_pred EEEEEEECCcHHHHH-------------HHHHHHccCCcEEEEEEeCCCc-hhHHHHHHHHHHhCC-CCCEEEEEECCCc
Confidence 468999999955432 2345778899999999876542 222333444444444 5899999999999
Q ss_pred cCCCCcHHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 013120 216 MDKGTDAADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAAR 258 (449)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (449)
........+.++......+..++.+++.++.+++.+...+...
T Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 163 NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp CTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHH
Confidence 7644321222222223344568888888888777665554443
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.16 E-value=3.2e-11 Score=124.12 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----cchHHHHHHHHhCCCC-CceEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAIKISREVDPTG-ERTFG 208 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-----~~~~~~~l~~~~~~~~-~rti~ 208 (449)
...++||||||..+. ...+..++..+|++|||+++.+... ......+.+..+...+ .++|+
T Consensus 110 ~~~~~iiDTPG~~~f-------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 176 (483)
T ss_dssp SCEEEEECCCCCGGG-------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEE
T ss_pred CceEEEEECCCcHHH-------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEE
Confidence 457999999999663 4567788999999999998654321 1122233333333334 46999
Q ss_pred EeccccccCC
Q 013120 209 VLTKIDLMDK 218 (449)
Q Consensus 209 VltK~D~~~~ 218 (449)
|+||+|+.+.
T Consensus 177 viNK~Dl~~~ 186 (483)
T 3p26_A 177 AMNKMDNVDW 186 (483)
T ss_dssp EEECGGGGTT
T ss_pred EEECcCcccc
Confidence 9999999863
No 154
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.15 E-value=8.4e-11 Score=118.23 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-c-cchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~-~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++||||||..+. ...+..++..+|++|+++++.... . .+.+.+.+++.+. ..++++|+||+
T Consensus 75 ~~~~iiDtPGh~~~-------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEVL-------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred ceEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECc
Confidence 36899999996543 455778889999999998755432 1 1223333444443 25899999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 140 Dl~~~ 144 (403)
T 3sjy_A 140 DVVSK 144 (403)
T ss_dssp GGSCH
T ss_pred cccch
Confidence 99864
No 155
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.14 E-value=3.3e-11 Score=117.37 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...+|+++|.+|+|||||++++++..+. .....++.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEE-------------------------------------
Confidence 4568999999999999999999987652 22222221111100
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~-- 190 (449)
+.+ ......+.|+||||..... .+...|++++|++|+|++..+......
T Consensus 196 ---------------~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 ---------------VMV-DGKPVNLGLWDTAGLEDYD-------------RLRPLSYPQTDVFLICFSLVSPASFHHVR 246 (332)
T ss_dssp ---------------EEE-TTEEEEEEEEEECCCGGGT-------------TTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCchhhh-------------HHHHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 000 0112246799999986542 335678999999999987554221111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 -DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 -~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+..++...+ +.++++|+||+|+...
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 12233334333 7899999999999754
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.14 E-value=6.6e-11 Score=120.21 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc-----chHHHHHHHHhCCCCCc-eEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPTGER-TFG 208 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~-----~~~~~~l~~~~~~~~~r-ti~ 208 (449)
...++||||||..+. ...+..++..+|++||+|++...... ..+..+.+..+...+.+ +|+
T Consensus 94 ~~~~~iiDTPGh~~f-------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 94 KKHFTILDAPGHKSF-------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 347999999997553 34466788899999999876543221 02333333444444666 899
Q ss_pred EeccccccC
Q 013120 209 VLTKIDLMD 217 (449)
Q Consensus 209 VltK~D~~~ 217 (449)
|+||+|+..
T Consensus 161 viNK~Dl~~ 169 (439)
T 3j2k_7 161 LINKMDDPT 169 (439)
T ss_pred EeecCCCcc
Confidence 999999964
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.12 E-value=1.8e-10 Score=119.36 Aligned_cols=138 Identities=13% Similarity=0.211 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
..+.|+++|..|+|||||+|+|++..-.....+.+.... ..+.. +.+.... +
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~--------------------~~~~~------~~d~~~~--e 63 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK--------------------AARHA------TSDWMEL--E 63 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------CC------HHHHHHH--H
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc--------------------cccce------ecccchh--h
Confidence 457899999999999999999985331110001000000 00000 1111111 1
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+..|. .+....+.+.. ....++||||||..+.. ..+..|++.+|++|+|+++... .....
T Consensus 64 ~~~Gi--Ti~~~~~~~~~---~~~~i~liDTPG~~df~-------------~~~~~~l~~aD~allVvDa~~g--~~~~t 123 (528)
T 3tr5_A 64 KQRGI--SVTTSVMQFPY---KDYLINLLDTPGHADFT-------------EDTYRTLTAVDSALMVIDAAKG--VEPRT 123 (528)
T ss_dssp HHHCC--SSSSSEEEEEE---TTEEEEEECCCCSTTCC-------------HHHHHGGGGCSEEEEEEETTTC--SCHHH
T ss_pred hcCCe--eEEEeEEEEEe---CCEEEEEEECCCchhHH-------------HHHHHHHHhCCEEEEEEeCCCC--CCHHH
Confidence 11232 23333333322 23569999999987753 3488899999999999876542 24455
Q ss_pred HHHHHHhCCCCCceEEEeccccccCC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+.+.+...+.++++|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 56667777778999999999999643
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.11 E-value=4.7e-11 Score=122.67 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..++||||||..+. ...+..++..+|++|||+++.+ .. ..+..+.+..+...+.+.++|+||+|+
T Consensus 73 ~~i~iiDtPGh~~~-------------~~~~~~~~~~aD~~ilVvda~~-g~-~~qt~e~l~~~~~~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 73 YRITLVDAPGHADL-------------IRAVVSAADIIDLALIVVDAKE-GP-KTQTGEHMLILDHFNIPIIVVITKSDN 137 (482)
T ss_dssp EEEEECCCSSHHHH-------------HHHHHHHTTSCCEEEEEEETTT-CS-CHHHHHHHHHHHHTTCCBCEEEECTTS
T ss_pred EEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEecCC-Cc-cHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence 56999999996432 3456788999999999987543 22 223333333333347788999999999
Q ss_pred cC
Q 013120 216 MD 217 (449)
Q Consensus 216 ~~ 217 (449)
.+
T Consensus 138 ~~ 139 (482)
T 1wb1_A 138 AG 139 (482)
T ss_dssp SC
T ss_pred cc
Confidence 85
No 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.10 E-value=7e-11 Score=106.18 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHHHHHHh-CCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISREV-DPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~-~~~~~l~~~~-~~~~~rti~VltK~ 213 (449)
.+.++||+|..... +.+...|++.+|++|+|++..+.+ +.. ...+..+... ...+.++++|.||+
T Consensus 57 ~l~~~Dt~~~~~~~------------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGEN------------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcchh------------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 46789999965410 123456778899999888755422 111 1222223333 33478999999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 125 Dl~~ 128 (192)
T 2cjw_A 125 DLVR 128 (192)
T ss_dssp TCGG
T ss_pred hhhc
Confidence 9864
No 160
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.08 E-value=1.2e-10 Score=105.02 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
..+|+++|..|||||||+++|+|..+-+....+.+..+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~---------------------------------------- 44 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT---------------------------------------- 44 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----------------------------------------
Confidence 4589999999999999999999986522111000000000
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc-hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~-~~ 191 (449)
-.+.+.+ ....+.++||||..... .+...|++.++++|+|++..+... .. ..
T Consensus 45 ------------~~i~~~g-~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (199)
T 2f9l_A 45 ------------RSIQVDG-KTIKAQIWDTAGQERYR-------------RITSAYYRGAVGALLVYDIAKHLTYENVER 98 (199)
T ss_dssp ------------EEEEETT-EEEEEEEEECSSGGGTT-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEECC-EEEEEEEEECCCchhhh-------------hhhHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 0111111 11247789999976532 235577889999988886443211 11 11
Q ss_pred HHHHHHHhCCCCCceEEEeccccccC
Q 013120 192 AIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 192 ~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
.+..++.....+.+.+.|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 99 WLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCeEEEEEECccccc
Confidence 22222333345789999999999864
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.07 E-value=3e-11 Score=107.64 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc--ccc-hHHHHHHHHhCCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--LAT-SDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d--~~~-~~~~~l~~~~~~~~~rti~VltK 212 (449)
..+.++||||.... ..+...|+++++++++|++..+.. +.. ..++..++... .+.++++|.||
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK 121 (184)
T 2zej_A 56 LVLNVWDFAGREEF-------------YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121 (184)
T ss_dssp CEEEEEEECSHHHH-------------HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEEC
T ss_pred eEEEEEecCCCHHH-------------HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEEC
Confidence 45889999997542 334567888899988887644321 111 11111122222 26789999999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+..
T Consensus 122 ~Dl~~ 126 (184)
T 2zej_A 122 LDVSD 126 (184)
T ss_dssp GGGCC
T ss_pred CCccc
Confidence 99864
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=115.13 Aligned_cols=108 Identities=15% Similarity=0.234 Sum_probs=49.4
Q ss_pred CcEEEeCCCCCcCCcC-CCCCchHHHHHHHHHHHhcCC-------------CeEEEEEecCCCcccchHHHHHHHHhCCC
Q 013120 137 NLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEKP-------------NCIILAISPANQDLATSDAIKISREVDPT 202 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~~-------------d~iIl~v~~a~~d~~~~~~~~l~~~~~~~ 202 (449)
.++++||||+.+.... ..-..+...+......|+..+ ++++++|+++...+. .....+.+.+. .
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~-~~d~~~~~~l~-~ 173 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK-PLDVAFMKAIH-N 173 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCC-HHHHHHHHHTC-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcc-hhHHHHHHHhc-c
Confidence 5899999999654321 111224444444444666543 457777776554443 33345666665 4
Q ss_pred CCceEEEeccccccCCCCcHH---HHHcCcccccCCCeEEEEeCChhh
Q 013120 203 GERTFGVLTKIDLMDKGTDAA---DILEGKSYRLKFPWIGVVNRSQAD 247 (449)
Q Consensus 203 ~~rti~VltK~D~~~~~~~~~---~~l~~~~~~l~~g~~~v~~~s~~~ 247 (449)
+.++|+|+||+|+..... .. +.+.......+..|+.+.+.++.+
T Consensus 174 ~~piIlV~NK~Dl~~~~e-v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLKE-RERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp -SCEEEEEECCSSSCHHH-HHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred CCCEEEEEECCCCCCHHH-HHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 789999999999986432 11 112111222344566555555444
No 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.05 E-value=2e-10 Score=120.12 Aligned_cols=134 Identities=16% Similarity=0.259 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.++.|+++|+.++|||||+++|++.. +..++... . ..+.|... .+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--~-------------------~~~~D~~~--------~E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK--R-------------------EQLLDTLD--------VE 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc--c-------------------ccccccch--------hh
Confidence 45689999999999999999998631 11111000 0 00000000 00
Q ss_pred hhhCCCCCcccccEEEEEecCC--CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
+ ..+.++....+.+.+..++ ...++||||||..+. ...+..++..+|++||||++.+. . ..
T Consensus 50 r--erGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVDa~~g-v-~~ 112 (600)
T 2ywe_A 50 R--ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLIDASQG-I-EA 112 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEETTTB-C-CH
T ss_pred h--cccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEECCCC-c-cH
Confidence 1 1122333344444444322 246889999999874 33467788999999999875542 2 22
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+...........+.+.++|+||+|+...
T Consensus 113 qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 113 QTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 3333333333457899999999999753
No 164
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.03 E-value=2.1e-10 Score=120.14 Aligned_cols=134 Identities=18% Similarity=0.265 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
++..|+++|+.++|||||+++|++.. +..++... . ..+.|... .+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--~-------------------~~~~D~~~--------~E 47 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDREM--E-------------------AQVLDSMD--------LE 47 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCcccccc--c-------------------ccccccch--------hh
Confidence 45689999999999999999998632 11111000 0 00000000 00
Q ss_pred hhhCCCCCcccccEEEEEecCC--CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 013120 113 RETGRTKQISSVPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATS 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~ 190 (449)
+ ..+.++....+.+.+...+ ...++||||||..+. ...+..+++.+|++|+|+++.+. ...
T Consensus 48 r--erGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVDa~~g-v~~- 110 (599)
T 3cb4_D 48 R--ERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVDAGQG-VEA- 110 (599)
T ss_dssp -----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEETTTC-CCT-
T ss_pred h--cccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCCC-CCH-
Confidence 1 1112233334444443222 246899999998764 34577889999999999875442 222
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+...........+.+.|+|+||+|+...
T Consensus 111 qt~~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 111 QTLANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHCCCCEEEeeeccCcccc
Confidence 2222222223347899999999999754
No 165
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.03 E-value=6e-10 Score=109.71 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..+.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999973
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.02 E-value=8.3e-10 Score=112.04 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cchHHHHHHHHhCCCCC-ceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISREVDPTGE-RTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~~~~~~l~~~~~~~~~-rti~VltK 212 (449)
...++||||||..+. ......++..+|++|||+++.+... .+.+.+.+++.+ +. +.|+|+||
T Consensus 103 ~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~---~~~~iIvviNK 166 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL---GIKHIVVAINK 166 (434)
T ss_dssp SEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEEEC
T ss_pred CceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEc
Confidence 456999999997653 3345678899999999987554221 122233344433 43 68999999
Q ss_pred ccccCC
Q 013120 213 IDLMDK 218 (449)
Q Consensus 213 ~D~~~~ 218 (449)
+|+.+.
T Consensus 167 ~Dl~~~ 172 (434)
T 1zun_B 167 MDLNGF 172 (434)
T ss_dssp TTTTTS
T ss_pred CcCCcc
Confidence 999863
No 167
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.02 E-value=1.3e-09 Score=107.72 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..++.||||||+... ....+..+|.+|+++++...+.. .. +...+ ...+.++|+||+|
T Consensus 171 ~~~~iiiDTpGi~~~----------------~~~~~~~aD~vl~V~d~~~~~~~--~~--l~~~~--~~~p~ivVlNK~D 228 (355)
T 3p32_A 171 GFDVILIETVGVGQS----------------EVAVANMVDTFVLLTLARTGDQL--QG--IKKGV--LELADIVVVNKAD 228 (355)
T ss_dssp TCCEEEEEECSCSSH----------------HHHHHTTCSEEEEEEESSTTCTT--TT--CCTTS--GGGCSEEEEECCC
T ss_pred CCCEEEEeCCCCCcH----------------HHHHHHhCCEEEEEECCCCCccH--HH--HHHhH--hhcCCEEEEECCC
Confidence 357999999997652 11235889999999986543221 10 00111 1358899999999
Q ss_pred ccCCCC--cHHHHHcCcc--c-----ccCCCeEEEEeCChhhhhccCCHHHHHH
Q 013120 215 LMDKGT--DAADILEGKS--Y-----RLKFPWIGVVNRSQADINKNVDMIAARR 259 (449)
Q Consensus 215 ~~~~~~--~~~~~l~~~~--~-----~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (449)
+..... ...+.+.... . ....+++.++...+.+++.+...+....
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 864321 0111111100 0 1123456666666667766655554433
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.01 E-value=5.2e-10 Score=110.92 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCce-EEEec-cc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERT-FGVLT-KI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rt-i~Vlt-K~ 213 (449)
..++||||||..+. ...+..+++.+|++|||++ +..+. .+..+.+..+...+.+. |+|+| |+
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~-~qt~e~~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLD-AHTGECIIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCC-HHHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCc-HHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 35899999998764 2335567799999999997 33332 22333333333345666 99999 99
Q ss_pred cc
Q 013120 214 DL 215 (449)
Q Consensus 214 D~ 215 (449)
|+
T Consensus 124 Dl 125 (370)
T 2elf_A 124 ST 125 (370)
T ss_dssp GS
T ss_pred CC
Confidence 99
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.01 E-value=1.1e-09 Score=113.56 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=52.9
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.||||||..+.. ..+..|+..+|++|+|+++.+. . ......+.+.+...+.+.++|+||+|
T Consensus 81 ~~~i~liDTPG~~df~-------------~~~~~~l~~aD~~IlVvDa~~g-~-~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFS-------------EDTYRTLTAVDCCLMVIDAAKG-V-EDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTCC-------------HHHHHGGGGCSEEEEEEETTTC-S-CHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhHH-------------HHHHHHHHHCCEEEEEEeCCcc-c-hHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 3569999999997642 3467899999999999886543 2 34455566777777899999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 146 l~~~ 149 (529)
T 2h5e_A 146 RDIR 149 (529)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9754
No 170
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.01 E-value=9.3e-10 Score=110.84 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC--cccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~--d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++||||||..+. .......+..+|++|||+++... ...+.+.+.+++.+. ..++++|+||+
T Consensus 83 ~~i~iiDtPGh~~f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~ 147 (410)
T 1kk1_A 83 RRVSFIDAPGHEAL-------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKI 147 (410)
T ss_dssp EEEEEEECSSHHHH-------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred cEEEEEECCChHHH-------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECc
Confidence 45899999995431 23355667788999999875432 122334444444443 25789999999
Q ss_pred cccCC
Q 013120 214 DLMDK 218 (449)
Q Consensus 214 D~~~~ 218 (449)
|+.+.
T Consensus 148 Dl~~~ 152 (410)
T 1kk1_A 148 ELVDK 152 (410)
T ss_dssp GGSCH
T ss_pred cCCCH
Confidence 99864
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.00 E-value=8.4e-11 Score=120.46 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
+.|.|+++|+.++|||||+++|.+..+.....+..|.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~------------------------------------------- 39 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQ------------------------------------------- 39 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCC-------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeE-------------------------------------------
Confidence 5689999999999999999999975432111111111
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
.+.... +.. +...++||||||..+.... ...++..+|++|||++..+ .. ..+.
T Consensus 40 -------~i~~~~----v~~-~~~~i~~iDTPGhe~f~~~-------------~~~~~~~aD~aILVVda~~-g~-~~qT 92 (501)
T 1zo1_I 40 -------HIGAYH----VET-ENGMITFLDTPGHAAFTSM-------------RARGAQATDIVVLVVAADD-GV-MPQT 92 (501)
T ss_dssp -------CSSCCC----CCT-TSSCCCEECCCTTTCCTTS-------------BCSSSBSCSSEEEEEETTT-BS-CTTT
T ss_pred -------eEEEEE----EEE-CCEEEEEEECCCcHHHHHH-------------HHHHHhhCCEEEEEeeccc-Cc-cHHH
Confidence 000000 111 2246899999998665322 3466889999999987443 21 1222
Q ss_pred HHHHHHhCCCCCceEEEeccccccC
Q 013120 193 IKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
...+..+...+.|+++|+||+|+..
T Consensus 93 ~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 93 IEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSSST
T ss_pred HHHHHHHHhcCceEEEEEEeccccc
Confidence 2333333344778999999999975
No 172
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.99 E-value=2e-09 Score=108.31 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC--cccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~--d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
..++||||||..+. ......++..+|++|||+++... ...+.+.+.+++.+. ..+.++|+||+
T Consensus 81 ~~i~iiDtPGh~~f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHETL-------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHHHH-------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECT
T ss_pred cEEEEEECCCHHHH-------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEcc
Confidence 46899999995331 23344556778999999875432 112223333444332 24789999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|+.+..
T Consensus 146 Dl~~~~ 151 (408)
T 1s0u_A 146 DLVDEK 151 (408)
T ss_dssp TSSCTT
T ss_pred CCCCHH
Confidence 998653
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.99 E-value=2.1e-10 Score=117.12 Aligned_cols=143 Identities=21% Similarity=0.262 Sum_probs=76.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC-CCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...|+++|..++|||||+|+|++.. .++... + ..+..-....+..-.++..+.+.... +
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-----------------~~~~~~~~~~g~~~~~~a~~~d~~~~--e 66 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-----------------EKFEKEAAELGKGSFKYAWVLDKLKA--E 66 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-----------------HHHHHHGGGGSSSCCCHHHHHHHHHH--H
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-----------------HHhhhhHHhcCCcchhhhhhhccchh--H
Confidence 3589999999999999999999741 111000 0 00000000001111123333332222 2
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL----- 187 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~----- 187 (449)
+..|.+..+... .+.. ....++||||||..+. ...+..++..+|++|||+++.....
T Consensus 67 r~~GiTi~~~~~----~~~~-~~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~ 128 (458)
T 1f60_A 67 RERGITIDIALW----KFET-PKYQVTVIDAPGHRDF-------------IKNMITGTSQADCAILIIAGGVGEFEAGIS 128 (458)
T ss_dssp HHTTCCCSCSCE----EEEC-SSEEEEEEECCCCTTH-------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTC
T ss_pred HhcCcEEEEEEE----EEec-CCceEEEEECCCcHHH-------------HHHHHhhhhhCCEEEEEEeCCcCccccccC
Confidence 223443333221 2222 2346999999996542 3446778999999999987543211
Q ss_pred ---cchHHHHHHHHhCCCCCc-eEEEeccccccC
Q 013120 188 ---ATSDAIKISREVDPTGER-TFGVLTKIDLMD 217 (449)
Q Consensus 188 ---~~~~~~~l~~~~~~~~~r-ti~VltK~D~~~ 217 (449)
.+.+.+.+++. .+.+ +|+|+||+|+..
T Consensus 129 ~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 129 KDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp TTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred cchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12222333333 3554 899999999984
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.98 E-value=8.9e-10 Score=98.74 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCccc-ccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV-TRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
...|+++|..|||||||++.|+|..+ |....++ +..+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 68 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFAT--------------------------------------- 68 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEE---------------------------------------
Confidence 45899999999999999999999864 3221111 000000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-h
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-S 190 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d-~~~-~ 190 (449)
+ .+.+.+ ....+.++||||..+.. .++..|++.++.+++|++..+.. +.+ .
T Consensus 69 ---~----------~i~~~g-~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 121 (191)
T 1oix_A 69 ---R----------SIQVDG-KTIKAQIWDTAGLERYR-------------AITSAYYRGAVGALLVYDIAKHLTYENVE 121 (191)
T ss_dssp ---E----------EEEETT-EEEEEEEEEECSCCSSS-------------CCCHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ---E----------EEEECC-EEEEEEEEECCCCcchh-------------hhhHHHhhcCCEEEEEEECcCHHHHHHHH
Confidence 0 111111 11235689999987642 23567788899988887644321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccccccC
Q 013120 191 DAIKISREVDPTGERTFGVLTKIDLMD 217 (449)
Q Consensus 191 ~~~~l~~~~~~~~~rti~VltK~D~~~ 217 (449)
..+..++.......+.+.|+||+|+.+
T Consensus 122 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 122 RWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccccc
Confidence 122222333345678999999999864
No 175
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.95 E-value=2.6e-09 Score=107.34 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK~ 213 (449)
...++||||||..+. ...+..++..+|++|+|+++.+.. ..+..+.+..+...+.+ .++|+||+
T Consensus 74 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~--~~qt~~~l~~~~~~~ip~iivviNK~ 138 (405)
T 2c78_A 74 KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQVGVPYIVVFMNKV 138 (405)
T ss_dssp SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTTCC--CHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCCCC--cHHHHHHHHHHHHcCCCEEEEEEECc
Confidence 457999999998763 345677899999999998765432 22333344444444667 78999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+..
T Consensus 139 Dl~~ 142 (405)
T 2c78_A 139 DMVD 142 (405)
T ss_dssp GGCC
T ss_pred cccC
Confidence 9985
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=1.5e-09 Score=98.44 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=44.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh---cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI---EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi---~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
.+.++||||+..... +......++..+..|+ ..++.++++++... .. ......+.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-PL-KDLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CC-CHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-CC-chhHHHHHHHHHHcCCCeEEEEecc
Confidence 688999999864221 1112334455555666 35677777775433 22 1222223333444578899999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 988654
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.93 E-value=6.8e-10 Score=116.42 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
+.++||||||..+.... ...+++.+|.+|||++..+ .. ..+.+..++.+...+.|+++|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~~~-------------~~r~~~~aD~aILVvDa~~-Gv-~~qT~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTL-------------RKRGGALADLAILIVDINE-GF-KPQTQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTTS-------------BCSSSBSCSEEEEEEETTT-CC-CHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHHH-------------HHHHHhhCCEEEEEEECCC-Cc-cHhHHHHHHHHHHcCCeEEEEeccccc
Confidence 35899999998766432 3357888999999987543 22 233444444444567899999999999
Q ss_pred cC
Q 013120 216 MD 217 (449)
Q Consensus 216 ~~ 217 (449)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 74
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.91 E-value=1.2e-09 Score=116.98 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=50.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...+.||||||..+.. ..+..+++.+|.+|+++++.+. . ......+.+.+...+.+.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df~-------------~~~~~~l~~aD~~llVvDa~~g-~-~~~~~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFT-------------VEVERSLRVLDGAVTVLDAQSG-V-EPQTETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSCC-------------HHHHHHHHHCSEEEEEEETTTB-S-CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcchH-------------HHHHHHHHHCCEEEEEECCCCC-C-cHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 3569999999997642 3367888999999999876542 2 23334444555556889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 179
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.87 E-value=2.8e-09 Score=108.12 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=46.7
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----cchHHHHHHHHhCCCC-CceEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAIKISREVDPTG-ERTFG 208 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-----~~~~~~~l~~~~~~~~-~rti~ 208 (449)
...++||||||..+. ...+..++..+|++|+|+++.+..+ ...+..+.+..+...+ .+.++
T Consensus 83 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iiv 149 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIV 149 (435)
T ss_dssp SCEEEECCCSSSTTH-------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEE
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 356999999998763 3446778999999999997655211 1112223333222234 46889
Q ss_pred EeccccccCC
Q 013120 209 VLTKIDLMDK 218 (449)
Q Consensus 209 VltK~D~~~~ 218 (449)
|+||+|+.+.
T Consensus 150 viNK~Dl~~~ 159 (435)
T 1jny_A 150 AVNKMDLTEP 159 (435)
T ss_dssp EEECGGGSSS
T ss_pred EEEcccCCCc
Confidence 9999999863
No 180
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.87 E-value=7.6e-10 Score=109.76 Aligned_cols=75 Identities=8% Similarity=0.033 Sum_probs=43.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh---cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI---EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKI 213 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi---~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~ 213 (449)
++.+|||||+....... ..+......++ +..+.+++++.+...-+. . .+..+..+...+.++++|+||.
T Consensus 213 ~~~liDtPG~~~~~~~~------~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~-g-~l~~l~~l~~~~~~~~~v~~k~ 284 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMA------HFVDARDLKIITPKREIHPRVYQLNEGQTLFF-G-GLARLDYIKGGRRSFVCYMANE 284 (369)
T ss_dssp TCEEEECCSCCCCSSGG------GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEE-T-TTEEEEEEESSSEEEEEEECTT
T ss_pred CeEEEeCCCcCcHHHHH------HHHhHHHHHHHhcccccCceEEEEcCCceEEE-C-CEEEEEEccCCCceEEEEecCC
Confidence 58999999998653211 11111122333 678888888865322111 1 1212333445577899999999
Q ss_pred cccCCC
Q 013120 214 DLMDKG 219 (449)
Q Consensus 214 D~~~~~ 219 (449)
|.+...
T Consensus 285 d~~~~~ 290 (369)
T 3ec1_A 285 LTVHRT 290 (369)
T ss_dssp SCEEEE
T ss_pred cccccc
Confidence 987543
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.86 E-value=1.5e-08 Score=108.67 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=50.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..+.||||||..+. ...+..+++.+|.+|+++++... . ......+.+.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~g-v-~~qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAVMVYCAVGG-V-QPQSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccch-------------HHHHHHHHHHCCEEEEEEeCCCC-C-cHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 57999999998764 34577889999999999876542 2 333444555555568899999999998
Q ss_pred cCC
Q 013120 216 MDK 218 (449)
Q Consensus 216 ~~~ 218 (449)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 182
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=3.5e-09 Score=104.04 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=25.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCccccccc
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p 71 (449)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999764222222356555
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.84 E-value=3.8e-09 Score=113.07 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..+. ...+..+++.+|.+|+++++.... ......+.+.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~g~--~~~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQGV--EPQSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCCCc--chhhHHHHHHHHHcCCCEEEEEECCC
Confidence 357999999999764 455788899999999999865432 23333344444445889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9754
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.83 E-value=1.9e-10 Score=120.98 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCC--------cccchHHHHHHHHhCCCCCc-e
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQ--------DLATSDAIKISREVDPTGER-T 206 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~--------d~~~~~~~~l~~~~~~~~~r-t 206 (449)
..++||||||..+.... +..++..+|++||||++... ...+.+.+.++.. .+.+ +
T Consensus 255 ~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCE
T ss_pred eEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeE
Confidence 57899999998764322 34567789999999876532 1222333334443 3554 8
Q ss_pred EEEeccccccC
Q 013120 207 FGVLTKIDLMD 217 (449)
Q Consensus 207 i~VltK~D~~~ 217 (449)
|+|+||+|+..
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 89999999986
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.83 E-value=6.6e-09 Score=104.19 Aligned_cols=124 Identities=21% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDR 113 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (449)
.+.|+++|.+||||||||++|+|....-.+...+|..|..-
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G--------------------------------------- 197 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--------------------------------------- 197 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE---------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee---------------------------------------
Confidence 35699999999999999999999742111111223333110
Q ss_pred hhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hH
Q 013120 114 ETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (449)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~--~~ 191 (449)
. +...+...++++|+||+......... +. ......+..++.++.+++.. .+... +.
T Consensus 198 -------------~--V~~~~~~~~~l~DtpGli~~a~~~~~--L~----~~fl~~~era~~lL~vvDls-~~~~~~ls~ 255 (416)
T 1udx_A 198 -------------V--VEVSEEERFTLADIPGIIEGASEGKG--LG----LEFLRHIARTRVLLYVLDAA-DEPLKTLET 255 (416)
T ss_dssp -------------E--EECSSSCEEEEEECCCCCCCGGGSCC--SC----HHHHHHHTSSSEEEEEEETT-SCHHHHHHH
T ss_pred -------------E--EEecCcceEEEEeccccccchhhhhh--hh----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHH
Confidence 0 11122346899999999764322110 11 11233467899998888754 22211 11
Q ss_pred HHHHHHHhCC--CCCceEEEeccccccCC
Q 013120 192 AIKISREVDP--TGERTFGVLTKIDLMDK 218 (449)
Q Consensus 192 ~~~l~~~~~~--~~~rti~VltK~D~~~~ 218 (449)
..+-...+.+ ...|.++|+||+|....
T Consensus 256 g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 256 LRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 1111112221 15788999999998754
No 186
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.81 E-value=3.8e-09 Score=115.36 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
..+.||||||..+.. ..+..|++.+|++|+|++..+. . ..+...+.+.+...+.+.++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~ailVvDa~~g-~-~~qt~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------------SEVTAALRVTDGALVVVDTIEG-V-CVQTETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSC-------------HHHHHHHHTCSEEEEEEETTTB-S-CHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhH-------------HHHHHHHHhCCEEEEEEeCCCC-C-CHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 468999999998753 3478899999999999875542 2 233334444444557899999999998
Q ss_pred c
Q 013120 216 M 216 (449)
Q Consensus 216 ~ 216 (449)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 7
No 187
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.81 E-value=5.8e-09 Score=104.52 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK~ 213 (449)
...++||||||..+. ...+..++..+|++|+++++.... ..+..+.+..+...+.+ .++|+||+
T Consensus 65 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~--~~qt~e~l~~~~~~~vp~iivviNK~ 129 (397)
T 1d2e_A 65 ARHYAHTDCPGHADY-------------VKNMITGTAPLDGCILVVAANDGP--MPQTREHLLLARQIGVEHVVVYVNKA 129 (397)
T ss_dssp SCEEEEEECSSHHHH-------------HHHHHHTSSCCSEEEEEEETTTCS--CHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCC--CHHHHHHHHHHHHcCCCeEEEEEECc
Confidence 457999999997652 334677889999999998755422 22333333333334667 68999999
Q ss_pred cccC
Q 013120 214 DLMD 217 (449)
Q Consensus 214 D~~~ 217 (449)
|+.+
T Consensus 130 Dl~~ 133 (397)
T 1d2e_A 130 DAVQ 133 (397)
T ss_dssp GGCS
T ss_pred ccCC
Confidence 9985
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=2e-08 Score=100.74 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCcEEEeCCCCCcCCcCC-CCCchHHHHHHHHHHH-----------hcCCC--eEEEEEecCCCcccchHHHHHHHHhCC
Q 013120 136 VNLTLIDLPGLTKVAVEG-QPDSIVQDIENMVRSY-----------IEKPN--CIILAISPANQDLATSDAIKISREVDP 201 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~-q~~~~~~~~~~~~~~y-----------i~~~d--~iIl~v~~a~~d~~~~~~~~l~~~~~~ 201 (449)
+.++++||||+....... .-..+...+......| +.+++ ++++++.|....+... ...+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~-d~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL-DIEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH-HHHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH-HHHHHHHHhc
Confidence 468999999997642210 0011222222323333 34444 4556665543334332 3456677765
Q ss_pred CCCceEEEeccccccCC
Q 013120 202 TGERTFGVLTKIDLMDK 218 (449)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (449)
+.++|+|+||+|+..+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 189
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=1.4e-08 Score=101.51 Aligned_cols=82 Identities=15% Similarity=0.277 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCCcCCcCC-CCCch----HHHHHHHHHHHhc---------C--CCeEEEEEecCCCcccchHHHHHHHHh
Q 013120 136 VNLTLIDLPGLTKVAVEG-QPDSI----VQDIENMVRSYIE---------K--PNCIILAISPANQDLATSDAIKISREV 199 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~-q~~~~----~~~~~~~~~~yi~---------~--~d~iIl~v~~a~~d~~~~~~~~l~~~~ 199 (449)
+.++++|+||+....... ....+ ...+..+...|.. . .|++++++.+++.++... ...+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~-Dieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL-DLVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH-HHHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH-HHHHHHHH
Confidence 468999999997632110 00112 2233333333321 1 235677777776655444 46788888
Q ss_pred CCCCCceEEEeccccccCCC
Q 013120 200 DPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 200 ~~~~~rti~VltK~D~~~~~ 219 (449)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 688999999999998654
No 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.75 E-value=2.9e-09 Score=100.15 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCCeEEEECCC---------CCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQ---------SSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~---------saGKSSllnaL~G~ 57 (449)
...+|+|+|.+ |+|||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 44589999999 99999999999984
No 191
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.74 E-value=4.4e-08 Score=94.61 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-hHHH-HHH---HHhCCCCCceEEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAI-KIS---REVDPTGERTFGV 209 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~-~~~~-~l~---~~~~~~~~rti~V 209 (449)
...+.||||||..+.... .+ +...|+++++++|+|++..+. +.. ...+ .+. +...+ +.+.++|
T Consensus 45 ~v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 367999999998875210 00 367899999999999876553 211 1111 122 22334 6899999
Q ss_pred eccccccCC
Q 013120 210 LTKIDLMDK 218 (449)
Q Consensus 210 ltK~D~~~~ 218 (449)
.||+|+..+
T Consensus 113 gNK~DL~~~ 121 (331)
T 3r7w_B 113 IHKVDGLSE 121 (331)
T ss_dssp CCCCCSSCS
T ss_pred EECcccCch
Confidence 999999854
No 192
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=4e-09 Score=104.48 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=43.1
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHH--hcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSY--IEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~y--i~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.+.++||||+....... ..+. .+....+ .+..+.+++++.+...-+. . .+.....+...+.++++|+||+|
T Consensus 212 ~~~liDtPG~~~~~~~~--~~l~---~~~l~~~~~~~~i~~~~~~l~~~~~~~~-g-~l~~~d~l~~~~~~~~~v~nk~d 284 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMA--HYVG---KQSLKLITPTKEIKPMVFQLNEEQTLFF-S-GLARFDYVSGGRRAFTCHFSNRL 284 (368)
T ss_dssp SCEEEECCCBCCTTSGG--GGSC---HHHHHHHSCSSCCCCEEEEECTTEEEEE-T-TTEEEEEEESSSEEEEEEECTTS
T ss_pred CeEEEeCCCcCcHHHHH--HHhh---HHHHHHhccccccCceEEEEcCCCEEEE-c-ceEEEEEecCCCceEEEEecCcc
Confidence 48999999997653111 1111 1222233 3567778787765322111 1 12223334445778999999999
Q ss_pred ccCCC
Q 013120 215 LMDKG 219 (449)
Q Consensus 215 ~~~~~ 219 (449)
.+...
T Consensus 285 ~~~~~ 289 (368)
T 3h2y_A 285 TIHRT 289 (368)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 98654
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.73 E-value=1.1e-08 Score=98.45 Aligned_cols=121 Identities=15% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCcEEEeCCCCCcCCcC-CCCCchHHHHHHHHHHHhcC-------------CCeEEEEEecCCCcccchHHHHHHHHhCC
Q 013120 136 VNLTLIDLPGLTKVAVE-GQPDSIVQDIENMVRSYIEK-------------PNCIILAISPANQDLATSDAIKISREVDP 201 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~-------------~d~iIl~v~~a~~d~~~~~~~~l~~~~~~ 201 (449)
..++++||||+...... ..-..+...+.+....|+.. ++++++++.|....+...+ ..+++.+..
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 46899999999543211 01122333333334455543 2346666665443233322 466777754
Q ss_pred CCCceEEEeccccccCCCCc--HHHHHcCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 013120 202 TGERTFGVLTKIDLMDKGTD--AADILEGKSYRLKFPWIGVVNRSQADINKNVDMIAARR 259 (449)
Q Consensus 202 ~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (449)
..++++|+||.|+..+.+- ..+.+.......+..|+.+...+. +++.....+....
T Consensus 155 -~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp -TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred -cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 5689999999999754221 011111111222345666665555 5555554444333
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.71 E-value=4.1e-08 Score=96.27 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 195
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.70 E-value=8.7e-09 Score=105.40 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc--------ccchHHHHHHHHhCCCCCc-
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD--------LATSDAIKISREVDPTGER- 205 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d--------~~~~~~~~l~~~~~~~~~r- 205 (449)
...++||||||..+. ......++..+|++||||++.+.. ..+.+.+.++. ..+.+
T Consensus 120 ~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~---~~~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR---TQGINH 183 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH---HTTCSS
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH---HcCCCE
Confidence 356899999998654 233567789999999999755431 12223333333 33565
Q ss_pred eEEEeccccccC
Q 013120 206 TFGVLTKIDLMD 217 (449)
Q Consensus 206 ti~VltK~D~~~ 217 (449)
.|+|+||+|+..
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 899999999964
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.67 E-value=2.1e-08 Score=99.47 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-.+|++||.+|+|||||+|+|+|..+.......||..|..-.+.- ++.. + ..+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--------------~~~r------~-~~l~---- 75 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--------------PDER------F-DFLC---- 75 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--------------CCHH------H-HHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--------------CCcc------c-eeec----
Confidence 3458999999999999999999998752222234555553322110 0000 0 0000
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
...... .. ....++++||||+......+ ..+.+....|++++|+|++|++..
T Consensus 76 ~~~~p~--------~~-----~~~~i~lvDtpGl~~~as~~------~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 76 QYHKPA--------SK-----IPAFLNVVDIAGLVKGAHNG------QGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp HHHCCS--------EE-----ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cccCcc--------cc-----cccccEEEECCCcccccchh------hHHHHHHHHHHHhcCeEEEEEecC
Confidence 000000 00 01248999999998754321 122234678999999999998754
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.66 E-value=2.1e-08 Score=104.38 Aligned_cols=82 Identities=11% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHH
Q 013120 119 KQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE 198 (449)
Q Consensus 119 ~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~ 198 (449)
-++....+.+.. ....+.||||||..++..+ +.+.++-+|..|+||++.. . ...+...+.+.
T Consensus 86 ITI~s~~~~~~~---~~~~iNlIDTPGHvDF~~E-------------v~raL~~~DgAvlVvda~~-G-V~~qT~~v~~~ 147 (548)
T 3vqt_A 86 ISVTTSVMQFPY---RDRVVNLLDTPGHQDFSED-------------TYRVLTAVDSALVVIDAAK-G-VEAQTRKLMDV 147 (548)
T ss_dssp --CTTTEEEEEE---TTEEEEEECCCCGGGCSHH-------------HHHHHHSCSEEEEEEETTT-B-SCHHHHHHHHH
T ss_pred CcEeeceEEEEE---CCEEEEEEeCCCcHHHHHH-------------HHHHHHhcCceEEEeecCC-C-cccccHHHHHH
Confidence 344455555543 2356999999999998643 7788899999999987543 3 34455567777
Q ss_pred hCCCCCceEEEeccccccCC
Q 013120 199 VDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 199 ~~~~~~rti~VltK~D~~~~ 218 (449)
+...+.|.|+++||+|....
T Consensus 148 a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 148 CRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHTTCCEEEEEECTTSCCC
T ss_pred HHHhCCceEEEEecccchhc
Confidence 77789999999999998643
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.66 E-value=3.3e-07 Score=89.61 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-..++++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999964
No 199
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.61 E-value=1.1e-07 Score=101.19 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=78.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
....|+++|..++|||||+++|++........|.+. .+..+.++....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~------------------------~g~~~~d~~~~e-------- 55 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE------------------------EGTTTTDYTPEA-------- 55 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG------------------------GTCCSSCCSHHH--------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec------------------------CCcccccCCHHH--------
Confidence 346899999999999999999996532100111110 011111211110
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
+..| .++......+ .. ....+.|+||||..+. ...+..+++.+|.+++++++.. .. ....
T Consensus 56 ~~~g--iti~~~~~~~--~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD~~~-g~-~~qt 115 (665)
T 2dy1_A 56 KLHR--TTVRTGVAPL--LF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVSAEA-GV-QVGT 115 (665)
T ss_dssp HHTT--SCCSCEEEEE--EE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEETTT-CS-CHHH
T ss_pred HhcC--CeEEecceEE--ee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEcCCc-cc-chhH
Confidence 1112 1222222222 22 2356899999998764 3557888999999999998543 22 2333
Q ss_pred HHHHHHhCCCCCceEEEecccccc
Q 013120 193 IKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
..+++.+...+.+.++|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 345555544588999999999997
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=90.07 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=49.4
Q ss_pred CCcEEEeCCCCCcCCcCCCC-CchHHHHHHHHHHHh--------------cCCCeEEEEEecCCCcccchHHHHHHHHhC
Q 013120 136 VNLTLIDLPGLTKVAVEGQP-DSIVQDIENMVRSYI--------------EKPNCIILAISPANQDLATSDAIKISREVD 200 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~-~~~~~~~~~~~~~yi--------------~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~ 200 (449)
+.++++|+||+.......+. +.+...+..-...++ ..+++.++++++....+.. ....+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~-lD~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRP-LDLEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCH-HHHHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCH-HHHHHHHHHH
Confidence 46899999999764432221 112222222222222 1357787888766554443 3466777777
Q ss_pred CCCCceEEEeccccccCCC
Q 013120 201 PTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (449)
.. .++|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 76 8999999999998654
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.61 E-value=7.6e-08 Score=94.99 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=61.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHhhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRE 114 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (449)
.+|++||.+|+|||||+|+|+|..........+|..|+.-.. ..+ + ..+.. .....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v~------------------~-~~l~~----~~~~~ 57 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PLE------------------D-ERLYA----LQRTF 57 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-ECC------------------C-HHHHH----HHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ecC------------------h-HHHHH----HHHHh
Confidence 479999999999999999999864211222345666643321 100 0 01110 00111
Q ss_pred hCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC
Q 013120 115 TGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN 184 (449)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~ 184 (449)
... .. +.......+.||||||+......+. .+ .+....+++.+|+|++|++...
T Consensus 58 ~~~-~~---------~~~~~~~~i~lvDtpGl~~~a~~~~--~l----g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 58 AKG-ER---------VPPVVPTHVEFVDIAGLVKGAHKGE--GL----GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CBT-TB---------CCCEECCEEEEEECCSCCCCCCSSS--CT----THHHHHHHHTCSEEEEEEECCC
T ss_pred ccc-cc---------ccccCCceEEEEECCCccccccccc--hH----HHHHHHHHHhCCEEEEEEECCC
Confidence 010 00 0000123589999999987653321 12 2335667899999999987554
No 202
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.60 E-value=2.6e-08 Score=109.68 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cchHHHHHHHHhCCCCCc-eEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL-ATSDAIKISREVDPTGER-TFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~-~~~~~~~l~~~~~~~~~r-ti~VltK 212 (449)
...++||||||..+. ...+..++..+|++||||+...... .+.+.+.+++. .+.+ +|+|+||
T Consensus 358 ~~kI~IIDTPGHedF-------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~---lgIP~IIVVINK 421 (1289)
T 3avx_A 358 TRHYAHVDCPGHADY-------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ---VGVPYIIVFLNK 421 (1289)
T ss_dssp SCEEEEEECCCHHHH-------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH---HTCSCEEEEEEC
T ss_pred CEEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH---cCCCeEEEEEee
Confidence 457999999997653 3446678999999999987554322 12233334443 3666 7899999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
+|+.+
T Consensus 422 iDLv~ 426 (1289)
T 3avx_A 422 CDMVD 426 (1289)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 99985
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.54 E-value=1.7e-07 Score=96.08 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGER-TFGVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~r-ti~VltK~D 214 (449)
.++.||||||..... ......+..+. .++ .+|.+++|+++.. .. ++...++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVvDa~~-g~---~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVMDASI-GQ---ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEEETTC-CT---THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEEeccc-cc---cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 579999999987632 11223333322 233 8999988887544 21 244455555432 45 589999999
Q ss_pred ccCCCCcHHH
Q 013120 215 LMDKGTDAAD 224 (449)
Q Consensus 215 ~~~~~~~~~~ 224 (449)
....+..+.+
T Consensus 252 ~~~~~g~~l~ 261 (504)
T 2j37_W 252 GHAKGGGALS 261 (504)
T ss_dssp SCCCCTHHHH
T ss_pred cccchHHHHH
Confidence 9866544444
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.52 E-value=7.3e-08 Score=103.57 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
++-.|+|+|+..+|||||.++|+-.. |. ++..-.+. .+..+.|+....
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~-i~~~g~v~-----------------~~~~~~D~~~~E-------- 59 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GV-NHKLGEVH-----------------DGAATTDWMVQE-------- 59 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HH-HHHC-----------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CC-CCcCceec-----------------CCCccCCChHHH--------
Confidence 34479999999999999999998321 11 01110000 011112222111
Q ss_pred hhhCCCCCcccccEEEEEecCC----CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCccc
Q 013120 113 RETGRTKQISSVPIHLSIYSPN----VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLA 188 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~----~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~ 188 (449)
+ .++.++....+.+...+.. ...+.||||||..++..+ +...++-+|..|+||++.. . .
T Consensus 60 ~--eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~E-------------v~~aLr~~DgavlvVDave-G-V 122 (709)
T 4fn5_A 60 Q--ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIE-------------VERSLRVLDGAVVVFCGTS-G-V 122 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHH-------------HHHHHHHCSEEEEEEETTT-C-S
T ss_pred H--HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHH-------------HHHHHHHhCeEEEEEECCC-C-C
Confidence 1 2234455566666555432 235999999999987533 7778888999999887543 3 3
Q ss_pred chHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 189 TSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 189 ~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
..+...+.+++...+.+.++++||+|....
T Consensus 123 ~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 123 EPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred chhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 455566777777778999999999998643
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.49 E-value=3.1e-07 Score=86.10 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh-----CCCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIV-----GKDFL 60 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~-----G~~~l 60 (449)
..+.++++|..|+||||++++|. |.+++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45678999999999999999998 76553
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.49 E-value=1.7e-06 Score=86.87 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=52.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.||||||..... ......+..+ ..+..+|.++||+++.. .+++...++.+++....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i--~~~~~pd~vlLVvDA~~----gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI--SNVIHPHEVILVIDGTI----GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEEEEEGGG----GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH--HHhhcCceEEEEEeCCC----chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 589999999976532 1122223222 22446898888887553 245566777777666778899999999
Q ss_pred cCCCCcHHHHHc
Q 013120 216 MDKGTDAADILE 227 (449)
Q Consensus 216 ~~~~~~~~~~l~ 227 (449)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 876654555443
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.44 E-value=5.4e-08 Score=103.22 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
...++||||||..++.. -+.+.++-+|..|+||++.. .. ..+...+.+++...+.|.|+++||+|
T Consensus 66 ~~~iNlIDTPGH~DF~~-------------Ev~raL~~~DgavlVVDa~~-GV-~~qT~~v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 66 NTKVNIIDTPGHMDFLA-------------EVYRSLSVLDGAILLISAKD-GV-QAQTRILFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp SCBCCCEECCCSSSTHH-------------HHHHHHTTCSEEECCEESSC-TT-CSHHHHHHHHHHHHTCSCEECCEECC
T ss_pred CEEEEEEECCCcHHHHH-------------HHHHHHHHhCEEEEEEeCCC-CC-cHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 35699999999998742 37788899999999887543 33 33445566666666889999999999
Q ss_pred ccCC
Q 013120 215 LMDK 218 (449)
Q Consensus 215 ~~~~ 218 (449)
....
T Consensus 131 r~~a 134 (638)
T 3j25_A 131 QNGI 134 (638)
T ss_dssp SSSC
T ss_pred cccC
Confidence 8644
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.40 E-value=4.6e-07 Score=89.97 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=61.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccc-CcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
-..|+++|.+|||||||+|+|+|..+.+++ ...||..|+.-...-. +.. +..+. .
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~--------------~~r---~~~l~-------~ 75 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP--------------DER---FDWLC-------E 75 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC--------------CHH---HHHHH-------H
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeC--------------Ccc---hhhhh-------h
Confidence 458999999999999999999997752332 3345666643322110 000 00000 0
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA 183 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a 183 (449)
...+. . .+ ...+.++|+||+......++ .+ .+....+++.+|+|+++++..
T Consensus 76 ~~~~~------~--~v------~~~i~lvD~pGl~~~~s~~e--~L----~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 76 AYKPK------S--RV------PAFLTVFDIAGLTKGASTGV--GL----GNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp HHCCS------E--EE------CEEEEEECTGGGCCCCCSSS--SS----CHHHHHHHTTCSEEEEEEECC
T ss_pred hcccc------c--cc------CcceEEEeccccccCCcHHH--HH----HHHHHHHHHHHHHHHHHHhcc
Confidence 00010 0 00 12478999999987554321 11 234567889999999988754
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.39 E-value=1.9e-06 Score=86.11 Aligned_cols=121 Identities=25% Similarity=0.283 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccCcccccccEEEEEEecCCCCccceeeccCCCcccCChHHHHHHHHHHHh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETD 112 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (449)
.-+.++++|..|||||||+|+|+|..- |.+..+....+ .+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~-~~-------------------------------------- 107 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVV-EV-------------------------------------- 107 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCe-ec--------------------------------------
Confidence 345899999999999999999999642 22211111111 00
Q ss_pred hhhCCCCCcccccEEEEEecCCCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 013120 113 RETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (449)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~ 192 (449)
....+ + ...+..++++++|+||+.... ....+.++.+ -+.+.+.+++ ++ ... .....
T Consensus 108 ---------t~~~~-v-~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~-lS-~G~--~~kqr 164 (413)
T 1tq4_A 108 ---------TMERH-P-YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII-IS-ATR--FKKND 164 (413)
T ss_dssp ----------CCCE-E-EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE-EE-SSC--CCHHH
T ss_pred ---------ceeEE-e-ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE-eC-CCC--ccHHH
Confidence 00001 1 112344689999999987421 1122222221 1444455543 43 321 24556
Q ss_pred HHHHHHhCCCCCceEEEecccccc
Q 013120 193 IKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 193 ~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
..+++.+...+.|.++|+||+|.+
T Consensus 165 v~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 165 IDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCccc
Confidence 668888877789999999999975
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.34 E-value=6.9e-07 Score=85.05 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccc
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~~~lP~~ 63 (449)
-.+|+++|.+|+|||||+|+|+|.....++
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 348999999999999999999998753333
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.32 E-value=2.2e-06 Score=89.24 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
..+.|+|+|.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 456899999999999999999999864
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=9.8e-06 Score=81.35 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=50.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.+++.||||||...... .......+..+. ..+ +++.++||+++.. .+++...++.+.+....+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLVlDa~~----gq~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILVIDASI----GQKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEEEEGGG----GGGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEEEeCcc----chHHHHHHHHHhcccCCcEEEEeccc
Confidence 46899999999755111 112333333322 222 6788888887654 23445566666655567889999999
Q ss_pred ccCCCCcHHHHH
Q 013120 215 LMDKGTDAADIL 226 (449)
Q Consensus 215 ~~~~~~~~~~~l 226 (449)
....+..+..+.
T Consensus 250 ~~a~~G~als~~ 261 (433)
T 3kl4_A 250 GTAKGGGALSAV 261 (433)
T ss_dssp GCSCHHHHHHHH
T ss_pred ccccchHHHHHH
Confidence 886654444443
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.19 E-value=3.9e-06 Score=84.52 Aligned_cols=79 Identities=25% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHH-HHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCC-CceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR-SYIEKPNCIILAISPANQDLATSDAIKISREVDPTG-ERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~-~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~-~rti~VltK 212 (449)
..++.||||||.... .......+.. ..+..+|.+++|+++.. . +++...++.+.+.. ..+.+|+||
T Consensus 180 ~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVvda~~-g---~~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVIDGTI-G---QQAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEEEGGG-G---GGHHHHHHHHHTTSCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEeeccc-c---HHHHHHHHHHhhcccCCeEEEEeC
Confidence 458999999998752 1122222211 11336899888886543 2 24555566665533 338899999
Q ss_pred ccccCCCCcHHHH
Q 013120 213 IDLMDKGTDAADI 225 (449)
Q Consensus 213 ~D~~~~~~~~~~~ 225 (449)
+|....+..+.++
T Consensus 248 ~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 248 LDGSAKGGGALSA 260 (432)
T ss_dssp SSSCSTTHHHHHH
T ss_pred CCCccchHHHHHH
Confidence 9987655434443
No 214
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.15 E-value=8e-07 Score=80.94 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|.|+++|..|+|||||+|+|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999975
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=2.3e-06 Score=80.45 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~~ 59 (449)
.+++++|.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999865
No 216
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.87 E-value=2.8e-05 Score=78.33 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-.|+|+|.+++|||+|||+|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 446999999999999999999974
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.87 E-value=6.1e-06 Score=75.28 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
..+.|+|+|..|+|||||+++|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999753
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.85 E-value=8.5e-05 Score=71.00 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
..++.||||||....... +.....+..+ ..+..+|.+++++++.. .++....++.+.+.-.-+.+|+||+|
T Consensus 180 ~~D~ViIDTpg~~~~~~~---~~l~~el~~i--~~~~~~d~vllVvda~~----g~~~~~~~~~~~~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEE---AALLEEMKNI--YEAIKPDEVTLVIDASI----GQKAYDLASKFNQASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCH---HHHHHHHHHH--HHHHCCSEEEEEEEGGG----GGGHHHHHHHHHHTCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccH---HHHHHHHHHH--HHHhcCCEEEEEeeCCc----hHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 357999999998761100 0011111111 23447888888887542 24556666666553233778999999
Q ss_pred ccCCCCcHHHH
Q 013120 215 LMDKGTDAADI 225 (449)
Q Consensus 215 ~~~~~~~~~~~ 225 (449)
....+..+..+
T Consensus 251 ~~~~~g~~~~~ 261 (297)
T 1j8m_F 251 GTAKGGGALSA 261 (297)
T ss_dssp GCTTHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 87654434443
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.82 E-value=2.3e-05 Score=78.92 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHH-HHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMV-RSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~-~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D 214 (449)
.++.||||||..... ......+. ..++..++.+++|+++.. . +++...++.+++.-.-+-+|+||+|
T Consensus 184 ~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvda~~-g---~~~~~~~~~f~~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVDAMT-G---QDAANTAKAFNEALPLTGVVLTKVD 251 (433)
T ss_dssp CSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEETTB-C---TTHHHHHHHHHHHSCCCCEEEECTT
T ss_pred CCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEeecch-h---HHHHHHHHHHhccCCCeEEEEecCC
Confidence 579999999976532 11122221 234568999988887542 1 3455566665542222457899999
Q ss_pred ccCCCCcHHHH
Q 013120 215 LMDKGTDAADI 225 (449)
Q Consensus 215 ~~~~~~~~~~~ 225 (449)
....+..+..+
T Consensus 252 ~~~~~g~~l~i 262 (433)
T 2xxa_A 252 GDARGGAALSI 262 (433)
T ss_dssp SSSCCTHHHHH
T ss_pred CCccHHHHHHH
Confidence 87655444443
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.81 E-value=7.5e-05 Score=71.63 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=51.4
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
++.++||+|....... ....+..+...+++..+..|+.+++++++.. ..+.+..++.+......+++++||.|..
T Consensus 186 d~~llDt~G~~~~~~~-~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t----~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVT----GQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTB----CTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCchHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH----HHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 5679999998653211 1112332233344455667898888887554 2345555555543334689999999987
Q ss_pred CCCCcHHHHH
Q 013120 217 DKGTDAADIL 226 (449)
Q Consensus 217 ~~~~~~~~~l 226 (449)
..+..+..+.
T Consensus 261 a~gg~~l~i~ 270 (304)
T 1rj9_A 261 AKGGVLIPIV 270 (304)
T ss_dssp CCCTTHHHHH
T ss_pred ccccHHHHHH
Confidence 7666555543
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.78 E-value=0.00015 Score=70.17 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=51.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.++||+|...... .....+..+.+.. .+|-.++++++.. .++....++.+.....-+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~~~-----~l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETNR-----NLMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTTT-----CHHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHHH-----HHHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 3577899999865322 2444444433322 4777878887544 356777777776555678899999998
Q ss_pred cCCCCcHHHHH
Q 013120 216 MDKGTDAADIL 226 (449)
Q Consensus 216 ~~~~~~~~~~l 226 (449)
...+..+..++
T Consensus 281 ~a~~G~~l~~~ 291 (328)
T 3e70_C 281 DARGGAALSIS 291 (328)
T ss_dssp CSCCHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 76655555543
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.70 E-value=0.0002 Score=72.69 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=50.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHH---HHHh-cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEec
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMV---RSYI-EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLT 211 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~---~~yi-~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~Vlt 211 (449)
.++.||||+|...... .....+..++ +... ..++.++|++++.. .++.+..++.+...-.-+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDatt----Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDAST----GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG----THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCcc----cHHHHHHHHHHHhhcCCCEEEEE
Confidence 4688999999865321 1222222222 2121 24777888876543 24566667766654456789999
Q ss_pred cccccCCCCcHHHHHc
Q 013120 212 KIDLMDKGTDAADILE 227 (449)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (449)
|+|....+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777766666654
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.58 E-value=0.00015 Score=69.45 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=47.9
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh-----cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-----EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGV 209 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi-----~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~V 209 (449)
.+++.|+||||..... ......+..+ ...+ ..++.++|++++.. .++++..++.+.....-+-+|
T Consensus 186 ~~dvvIiDtpg~~~~~-----~~l~~eL~~l-~~~i~~~i~~~p~~vllVlda~t----~~~~l~~a~~~~~~~~i~gvV 255 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTK-----KNLMEELRKV-HRVVKKKIPDAPHETLLVIDATT----GQNGLVQAKIFKEAVNVTGII 255 (306)
T ss_dssp TCSEEEEEECCCCSCH-----HHHHHHHHHH-HHHGGGTCTTCCSEEEEEEEGGG----HHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCchhhH-----HHHHHHHHHH-HHHHhhccCCCCcEEEEEEECCC----CHHHHHHHHHHHhcCCCCEEE
Confidence 3679999999963321 1122223332 2222 24788888876542 244555555554333456678
Q ss_pred eccccccCCCCcHHHHHc
Q 013120 210 LTKIDLMDKGTDAADILE 227 (449)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (449)
+||.|....+..+.++..
T Consensus 256 lTk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 256 LTKLDGTAKGGITLAIAR 273 (306)
T ss_dssp EECGGGCSCTTHHHHHHH
T ss_pred EeCCCCccchHHHHHHHH
Confidence 999998877766655543
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.51 E-value=0.00075 Score=64.36 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK 212 (449)
.+++.|+||||..... ...+.++. ..+. .++.++++++ +..+ ..+..++++.+.. -...-+|+||
T Consensus 182 ~~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~~~~lVl~-at~~--~~~~~~~~~~~~~-l~~~giVltk 248 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSIQSFLVLS-ATAK--YEDMKHIVKRFSS-VPVNQYIFTK 248 (296)
T ss_dssp GSSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTEEEEEEEE-TTBC--HHHHHHHTTTTSS-SCCCEEEEEC
T ss_pred CCCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCCeEEEEEE-CCCC--HHHHHHHHHHHhc-CCCCEEEEeC
Confidence 3689999999998632 12222222 2333 3566666654 3322 2344445555543 2345567899
Q ss_pred ccccCCCCcHHHHHc
Q 013120 213 IDLMDKGTDAADILE 227 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~ 227 (449)
.|....+..+.+++.
T Consensus 249 ~D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 249 IDETTSLGSVFNILA 263 (296)
T ss_dssp TTTCSCCHHHHHHHH
T ss_pred CCcccchhHHHHHHH
Confidence 998766655555554
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.51 E-value=0.0012 Score=63.74 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=48.7
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHh-----cCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEE
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI-----EKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGV 209 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi-----~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~V 209 (449)
..++.||||||....... ....+.. +...+ ..+|.+++++.+.. .++++.-++.+.+...-+-+|
T Consensus 191 ~yD~VIIDTpg~l~~~~~-----l~~eL~~-~~~vi~~~~p~~~d~vllVl~a~~----~~~~l~~~~~~~~~~~i~GvV 260 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTN-----LMAELEK-MNKIIQQVEKSAPHEVLLVIDATT----GQNGVIQAEEFSKVADVSGII 260 (320)
T ss_dssp TCSEEEEECCCCGGGHHH-----HHHHHHH-HHHHHHTTCTTCCSEEEEEEEGGG----THHHHHHHHHHTTTSCCCEEE
T ss_pred CCCEEEEcCCCcccccHH-----HHHHHHH-HHHHHhcccCCCCceEEEEEECCC----cHHHHHHHHHHhhcCCCcEEE
Confidence 358999999998763210 1111111 11122 24788888876542 255666666676544445568
Q ss_pred eccccccCCCCcHHHHHc
Q 013120 210 LTKIDLMDKGTDAADILE 227 (449)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (449)
+||.|....+..+..+..
T Consensus 261 ltk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 261 LTKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp EECGGGCSCTTHHHHHHH
T ss_pred EeCCCCCCchhHHHHHHH
Confidence 999998766655555443
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.39 E-value=0.00018 Score=72.06 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
.++.||||||..... ......+..+ ..+-.++.++||+++.. .+++...++.+.+.-..+-+|+||+|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i--~~~~~pd~vlLVvDa~t----gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL--KEVLGPDEVLLVLDAMT----GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEEEEEGGG----TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh--hhccCCceEEEEEeccc----hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 579999999976531 0112211111 12337888888887542 256666666665533446778999998
Q ss_pred cCCCCcHHHH
Q 013120 216 MDKGTDAADI 225 (449)
Q Consensus 216 ~~~~~~~~~~ 225 (449)
...+..+..+
T Consensus 250 ~~~~g~alsi 259 (425)
T 2ffh_A 250 DARGGAALSA 259 (425)
T ss_dssp CSSCHHHHHH
T ss_pred cccHHHHHHH
Confidence 6555444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00051 Score=67.23 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=48.9
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
+..++||.|+...... ...++..+...+++..+.+|+-++|+++|.. . .+....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDptt-g---lD~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDGNT-G---LNMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEEGGG-G---GGGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEcCCC-C---CCHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3578999998653211 1112332333344455678887788888432 2 222233344433335688999999988
Q ss_pred CCCCcHHHHH
Q 013120 217 DKGTDAADIL 226 (449)
Q Consensus 217 ~~~~~~~~~l 226 (449)
..+.....+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7766555554
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.22 E-value=0.00052 Score=65.68 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=47.0
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
+..++|+.|+...... .+.++..+...+++..+.+|+-++|+++|.. .. +....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDpts-gl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDGNT-GL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEEGGG-GG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEeCCC-Cc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 3578999998653211 0111222222233334567887778888432 22 22223344433235688999999987
Q ss_pred CCCCcHHHHHc
Q 013120 217 DKGTDAADILE 227 (449)
Q Consensus 217 ~~~~~~~~~l~ 227 (449)
..+.....+..
T Consensus 260 ~~~g~~l~~~~ 270 (302)
T 3b9q_A 260 ARGGCVVSVVE 270 (302)
T ss_dssp SCTHHHHHHHH
T ss_pred CccChheehHH
Confidence 66655555443
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.01 E-value=0.0016 Score=62.11 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=46.0
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDL 215 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~ 215 (449)
+++.||||||...... .....+..+.. .-.++.+++++++.. .++....++.+.+.-.-.-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d~-----~~~~~l~~~~~--~~~~~~~~lv~~~~~----~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDE-----PLMGELARLKE--VLGPDEVLLVLDAMT----GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCCH-----HHHHHHHHHHH--HHCCSEEEEEEEGGG----THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCccccH-----HHHHHHHHHhh--hcCCCEEEEEEeCCC----cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 5899999999765310 12222222211 225888877776442 245555556555432335568999998
Q ss_pred cCCCCcHHHHH
Q 013120 216 MDKGTDAADIL 226 (449)
Q Consensus 216 ~~~~~~~~~~l 226 (449)
...+..+.++.
T Consensus 250 ~~~~g~~~~~~ 260 (295)
T 1ls1_A 250 DARGGAALSAR 260 (295)
T ss_dssp CSSCHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 76655555544
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.00046 Score=66.06 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
-.++++|..|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 379999999999999999999964
No 231
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.52 E-value=0.00054 Score=65.53 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=56.5
Q ss_pred CcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccccc
Q 013120 137 NLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLM 216 (449)
Q Consensus 137 ~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~ 216 (449)
.+.++|| ..+. +.+.+.|++++|++|+|++..+.+.......++...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer~-------------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRK-------------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCS-------------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--cccc-------------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899998 2221 334567999999999998765543222222223333333478999999999997
Q ss_pred CCCC--cHHHHHcCcccccCCCeEEEEeCChhhhhc
Q 013120 217 DKGT--DAADILEGKSYRLKFPWIGVVNRSQADINK 250 (449)
Q Consensus 217 ~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (449)
+... +..+..+... .. ..|+.+++.++.+++.
T Consensus 129 ~~~~v~~~~~~~~~~~-~~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 129 DEDDLRKVRELEEIYS-GL-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp CHHHHHHHHHHHHHHT-TT-SCEEECCTTTCTTHHH
T ss_pred CchhHHHHHHHHHHHh-hh-CcEEEEECCCCcCHHH
Confidence 5421 1122221110 11 5677776666655543
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.40 E-value=0.0068 Score=57.84 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||+|+|+ .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 68999999999999999999 5
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.18 E-value=0.0099 Score=52.63 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=41.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC--CCCceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--TGERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~--~~~rti~VltK 212 (449)
..++.|||+||... ..+...+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|+
T Consensus 75 ~yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp TSSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 35899999998764 12455667799998888665433112223333333331 13466889999
Q ss_pred cccc
Q 013120 213 IDLM 216 (449)
Q Consensus 213 ~D~~ 216 (449)
+|..
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9953
No 234
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.02 E-value=0.0047 Score=60.53 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc---------ccchHHHHHHHHhCC----
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVDP---- 201 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d---------~~~~~~~~l~~~~~~---- 201 (449)
...+.++||||..+. +.+...|+++++++|+|++..+-| -...+...+...+..
T Consensus 200 ~~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 456899999998653 556778999999999999766521 112233334433322
Q ss_pred CCCceEEEecccccc
Q 013120 202 TGERTFGVLTKIDLM 216 (449)
Q Consensus 202 ~~~rti~VltK~D~~ 216 (449)
.+.++|+|+||.|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 367999999999986
No 235
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.84 E-value=0.083 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~ 55 (449)
+-.|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3468899999999999999775
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.69 E-value=0.0042 Score=55.34 Aligned_cols=23 Identities=13% Similarity=0.512 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..|||||||+++|++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999975
No 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.57 E-value=0.012 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||||+|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68999999999999999999975
No 238
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.54 E-value=0.0054 Score=59.85 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcc---------cchHHHHHHHHhCC----
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDL---------ATSDAIKISREVDP---- 201 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~---------~~~~~~~l~~~~~~---- 201 (449)
...+.++||+|..+. +.+...|++++++||+|++..+-|- ...++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 456899999997654 4557789999999999997665221 12344444444432
Q ss_pred CCCceEEEecccccc
Q 013120 202 TGERTFGVLTKIDLM 216 (449)
Q Consensus 202 ~~~rti~VltK~D~~ 216 (449)
.+.++|+|+||.|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 367999999999985
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.41 E-value=0.0058 Score=53.92 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHhhCCC--CCcccCccccccc
Q 013120 37 IAVVGGQSSGKSSVLESIVGKD--FLPRGSGIVTRRP 71 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~~--~lP~~~~~~Tr~p 71 (449)
|+|+|+.||||+||+++|+... -+..+...+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 2334445567666
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.38 E-value=0.01 Score=57.93 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 69999999999999999999964
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.25 E-value=0.0073 Score=52.74 Aligned_cols=22 Identities=14% Similarity=0.533 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.20 E-value=0.0076 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999984
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.20 E-value=0.0047 Score=58.96 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=36.7
Q ss_pred HHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 165 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 165 ~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
+.+.|+.++|.+++|++..+.++.....-+++..+...+.+.++|+||+|+.++
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 345689999999998876544333332223333444457899999999999864
No 244
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.18 E-value=0.0084 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.14 E-value=0.012 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999996
No 246
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.10 E-value=0.022 Score=55.13 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=49.2
Q ss_pred CCCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC---------CcccchHHHHHHHHhC----
Q 013120 134 NVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---------QDLATSDAIKISREVD---- 200 (449)
Q Consensus 134 ~~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~---------~d~~~~~~~~l~~~~~---- 200 (449)
....+.++||+|-.+. +.++..|+++++++|+|++... ..-...++..+...+.
T Consensus 159 ~~v~l~iwDtaGQe~~-------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSE-------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCHHH-------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCcccc-------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 3467999999997653 7788999999999999997651 1111223333433332
Q ss_pred CCCCceEEEeccccccC
Q 013120 201 PTGERTFGVLTKIDLMD 217 (449)
Q Consensus 201 ~~~~rti~VltK~D~~~ 217 (449)
..+.++++|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 23678999999999864
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.10 E-value=0.013 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.07 E-value=0.0086 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999995
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.02 E-value=0.012 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-|+++|..|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.01 E-value=0.011 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999963
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.97 E-value=0.012 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999996
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.93 E-value=0.012 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999996
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.89 E-value=0.011 Score=57.06 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++|+|..|||||||+++|+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.87 E-value=0.013 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999963
No 255
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.84 E-value=0.013 Score=57.38 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~ 66 (449)
.++|+|..|||||||+++|+|. +|...+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~ 205 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRL 205 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceE
Confidence 6999999999999999999995 3444443
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.83 E-value=0.011 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999986
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.79 E-value=0.01 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+|+|..|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999985
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.78 E-value=0.011 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-++++|..|||||||++.|+|.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.74 E-value=0.015 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|.++++|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999974
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.71 E-value=0.014 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999963
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.68 E-value=0.013 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999985
No 262
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.66 E-value=0.015 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.66 E-value=0.013 Score=53.00 Aligned_cols=22 Identities=14% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 264
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.66 E-value=0.014 Score=59.96 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=24.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
.|+|+|..||||||++++|+|. +|.+.+.+|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 4899999999999999999985 455555443
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.66 E-value=0.017 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.57 E-value=0.018 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
-.++++|..|||||||++.|+|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999973
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.55 E-value=0.017 Score=52.88 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 268
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.49 E-value=0.02 Score=55.13 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecC---------CCcccchHHHHHHHHhCC----
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPA---------NQDLATSDAIKISREVDP---- 201 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a---------~~d~~~~~~~~l~~~~~~---- 201 (449)
...+.++||.|-.+. +.++..|+++++++|+|++-. +..-...++..+...+..
T Consensus 166 ~v~l~iwDtgGQe~~-------------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSE-------------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHHH-------------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchhH-------------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 457899999997653 566889999999999999432 111112344444444432
Q ss_pred CCCceEEEeccccccC
Q 013120 202 TGERTFGVLTKIDLMD 217 (449)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (449)
.+.++++++||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3578999999999864
No 269
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.47 E-value=0.019 Score=52.31 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.46 E-value=0.019 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999963
No 271
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.45 E-value=0.026 Score=55.89 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCc---------ccchHHHHHHHHhC----C
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----P 201 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d---------~~~~~~~~l~~~~~----~ 201 (449)
...+.|+||+|-.+. +.++..|+++++++|+|++..+-| -...++..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 357899999998764 456889999999999999765411 11223344444432 2
Q ss_pred CCCceEEEecccccc
Q 013120 202 TGERTFGVLTKIDLM 216 (449)
Q Consensus 202 ~~~rti~VltK~D~~ 216 (449)
...++++|+||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 357899999999985
No 272
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.40 E-value=0.021 Score=49.38 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 588999999999999998664
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.38 E-value=0.02 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.38 E-value=0.02 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 275
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.37 E-value=0.019 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.35 E-value=0.017 Score=49.41 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|+.+||||||++.|.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999996
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.31 E-value=0.021 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999963
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.30 E-value=0.022 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999963
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.29 E-value=0.022 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999999963
No 280
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.26 E-value=0.052 Score=51.08 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCCC--cHHHHHcCcccccCCCeEEE
Q 013120 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGT--DAADILEGKSYRLKFPWIGV 240 (449)
Q Consensus 163 ~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v 240 (449)
...+..++.++|+||.|+++... .... ...+.+.+ .+.+.++|+||+|+.+... .+.+.++. .+...+.+
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p-~~~~-~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~~----~g~~~i~i 85 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIP-MSSR-NPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFEN----QGIRSLSI 85 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTST-TTTS-CHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHHT----TTCCEEEC
T ss_pred HHHHHHHHhhCCEEEEEEeCCCC-CccC-CHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHHh----cCCcEEEE
Confidence 45678899999999999875432 2221 11233333 4789999999999986421 13333321 22344455
Q ss_pred EeCChhhhhccCCHHH
Q 013120 241 VNRSQADINKNVDMIA 256 (449)
Q Consensus 241 ~~~s~~~~~~~~~~~~ 256 (449)
+...+.+++.+...+.
T Consensus 86 SA~~~~gi~~L~~~i~ 101 (282)
T 1puj_A 86 NSVNGQGLNQIVPASK 101 (282)
T ss_dssp CTTTCTTGGGHHHHHH
T ss_pred ECCCcccHHHHHHHHH
Confidence 5555556555544433
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.20 E-value=0.023 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999964
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.18 E-value=0.019 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++|+|..||||||++++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999995
No 283
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.16 E-value=0.024 Score=52.55 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
.++++|..|||||||++.|+|.. |-.+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 58899999999999999999963 43445443
No 284
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.16 E-value=0.019 Score=55.94 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=46.7
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCC---------CcccchHHHHHHHHhCC----
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPAN---------QDLATSDAIKISREVDP---- 201 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~---------~d~~~~~~~~l~~~~~~---- 201 (449)
...+.++||+|-.+. +.+...|+++++++|+|++-.. ..-...+...+...+..
T Consensus 182 ~v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 356999999998664 4567889999999999987541 11112233334443322
Q ss_pred CCCceEEEeccccccC
Q 013120 202 TGERTFGVLTKIDLMD 217 (449)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (449)
...++++|.||+|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3678999999999853
No 285
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.11 E-value=0.024 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999963
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.07 E-value=0.021 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 287
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.06 E-value=0.025 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999963
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.05 E-value=0.018 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 289
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.03 E-value=0.026 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999963
No 290
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.99 E-value=0.023 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999986
No 291
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.93 E-value=0.057 Score=48.32 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCcccc-hHHH-HHHHHhCC----CCCceEEEeccc-cccCCCC--cHHHHHcCcc
Q 013120 160 QDIENMVRSYIEKPNCIILAISPANQDLAT-SDAI-KISREVDP----TGERTFGVLTKI-DLMDKGT--DAADILEGKS 230 (449)
Q Consensus 160 ~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~-~~~~-~l~~~~~~----~~~rti~VltK~-D~~~~~~--~~~~~l~~~~ 230 (449)
..++.+.+.|..+.|+||+||+++..+... .+.+ ++.+.+++ .+.+.++..||- |+...-+ ++.+.+.-..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC
Confidence 356888999999999999999987654322 2222 12233332 356788888996 5532211 2334333222
Q ss_pred cccCCCeEE--EEeCChhhhhccCCHH
Q 013120 231 YRLKFPWIG--VVNRSQADINKNVDMI 255 (449)
Q Consensus 231 ~~l~~g~~~--v~~~s~~~~~~~~~~~ 255 (449)
+...|+. ..+.+++++.++++++
T Consensus 193 --l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 193 --LNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp --GCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred --CCCCEEEEEeECCCCcCHHHHHHHH
Confidence 2467764 4556666666555443
No 292
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.91 E-value=0.012 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
+.|+|+|..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999985
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.90 E-value=0.023 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++|+|..|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6999999999999999999984
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.89 E-value=0.019 Score=51.53 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~ 67 (449)
.++++|..|||||||++.|+|. -|. +|.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl--~p~-~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ--ALQ-SKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH--HHH-TTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCc-CCee
Confidence 6899999999999999999996 244 3544
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.78 E-value=0.025 Score=49.40 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.++++|..||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.74 E-value=0.026 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999864
No 297
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.70 E-value=0.033 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhh---CCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIV---GKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~---G~~ 58 (449)
..|+++|..||||||+++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 479999999999999999999 864
No 298
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.70 E-value=0.036 Score=51.61 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPR 62 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~ 62 (449)
.++++|..|||||||++.|+|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 68899999999999999999974 64
No 299
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.57 E-value=0.025 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 59999999999999999999963
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.49 E-value=0.042 Score=46.77 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.7
Q ss_pred CeEEEECCCCCCHHHHHHHh
Q 013120 35 PAIAVVGGQSSGKSSVLESI 54 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL 54 (449)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 301
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.48 E-value=0.028 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|+|..||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999985
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.44 E-value=0.032 Score=49.22 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..++|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.43 E-value=0.03 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|+|..|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5889999999999999999985
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.41 E-value=0.032 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|.+||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999753
No 305
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.40 E-value=0.03 Score=53.35 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 166 VRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 166 ~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
++..+.+.|.+++|++....++......+++..+...+.+.++|+||+|+.++.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 334688999998887655445544433334444445689999999999999763
No 306
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.38 E-value=0.084 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.219 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+|+|.+|||||||.+.|.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.36 E-value=0.04 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
-..|+++|.+||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.34 E-value=0.051 Score=46.99 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|.|+++|.+|||||||++.|++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999863
No 309
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.33 E-value=0.036 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999963
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.31 E-value=0.046 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.28 E-value=0.027 Score=51.13 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.2
Q ss_pred eEEEECCCCCCHHHHHHHhh-CC
Q 013120 36 AIAVVGGQSSGKSSVLESIV-GK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~-G~ 57 (449)
.|+++|..|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 86
No 312
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.26 E-value=0.045 Score=53.62 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 160 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 160 ~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
+..+++...|.+.++.+++|++..+ +. ......++.+-. +.+.++|+||+|+.++.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d--~~-~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFD--FN-GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTS--HH-HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCcEEEEEEECCC--Cc-ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 4557778888889999988887543 21 111112233322 68899999999998654
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.26 E-value=0.031 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
...+++|..+||||||++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999874
No 314
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.24 E-value=0.06 Score=46.57 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-++++|.+|+|||||+.+|.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999985
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.19 E-value=0.049 Score=48.90 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~ 65 (449)
.++++|..+||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 589999999999999999998543444433
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.99 E-value=0.045 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.93 E-value=0.041 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..||||||+.++|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999975
No 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.91 E-value=0.051 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999999964
No 319
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.87 E-value=0.051 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999974
No 320
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.75 E-value=0.042 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|+|..||||||++++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.74 E-value=0.044 Score=50.21 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 322
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.69 E-value=0.055 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58899999999999999999963
No 323
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.69 E-value=0.056 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999999964
No 324
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.68 E-value=0.05 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999964
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.65 E-value=0.041 Score=53.76 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++|+|..|||||||++.|.|.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999996
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.64 E-value=0.058 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58999999999999999999964
No 327
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.62 E-value=0.031 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.+|.++|+|..|||||||||.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999999863
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.61 E-value=0.048 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.4
Q ss_pred CeEEEECCCCCCHHHHHHHhh---CCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIV---GKDF 59 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~---G~~~ 59 (449)
..|+++|..||||||+++.|. |..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 579999999999999999999 8643
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.61 E-value=0.045 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|+|..||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 330
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.56 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP-~IvVvG~~saGKSSllnaL~G~ 57 (449)
..| -|.+.|.+|+|||++..|+.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445 4999999999999999999864
No 331
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.59 E-value=0.062 Score=47.57 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 332
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.57 E-value=0.063 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999985
No 333
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.56 E-value=0.059 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999999973
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.52 E-value=0.059 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.++|||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999985
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.49 E-value=0.051 Score=48.01 Aligned_cols=22 Identities=50% Similarity=0.545 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|..||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 336
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.48 E-value=0.049 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 337
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.46 E-value=0.063 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999963
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.46 E-value=0.063 Score=45.25 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.0
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~ 55 (449)
+..+++|+.++||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999986
No 339
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.44 E-value=0.04 Score=46.49 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
-..++++|..|+|||+|++++.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999985
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.43 E-value=0.073 Score=46.71 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.29 E-value=0.057 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|+++|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.23 E-value=0.05 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.07 E-value=0.079 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999853
No 344
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.07 E-value=0.052 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58999999999999999999974
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.06 E-value=0.056 Score=47.88 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..+|||||+++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 346
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.99 E-value=0.064 Score=48.79 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.++++|..|||||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999994
No 347
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.85 E-value=0.059 Score=52.81 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 162 ~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+++...|...++.+++|++....+ .+..-.+.+.+. +.+.++|+||+|+.++.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~--~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFN--GSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSG--GGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHhhccCcEEEEEEECCCCC--CchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 4666777888899999988765432 211111223332 67999999999998764
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.78 E-value=0.077 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 349
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.78 E-value=0.088 Score=45.64 Aligned_cols=21 Identities=14% Similarity=0.261 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|++.|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 350
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.67 E-value=0.077 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..||||||||+.|.|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5999999999999999999996
No 351
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.62 E-value=0.1 Score=45.96 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.+||||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999984
No 352
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.59 E-value=0.1 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~ 55 (449)
.+.|+++|.+||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 353
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.065 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.-+.++|+|..|||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34789999999999999999999963
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.56 E-value=0.097 Score=45.31 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.2
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~ 55 (449)
|.|+++|.+||||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.47 E-value=0.11 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
-+.|+++|.++|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999753
No 356
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.46 E-value=0.052 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999963
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.44 E-value=0.078 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.41 E-value=0.11 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
+.|+++|.+||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 359
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.32 E-value=0.1 Score=45.07 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~ 55 (449)
.|+++|.++|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 360
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.29 E-value=0.097 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=19.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 013120 34 LPAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~ 55 (449)
-+-.+++|..||||||+++||+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999998
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.24 E-value=0.093 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999963
No 362
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.20 E-value=0.64 Score=46.25 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPA-IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~-IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+ |++.|.+|+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4555 999999999999999999863
No 363
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.19 E-value=0.11 Score=45.87 Aligned_cols=21 Identities=38% Similarity=0.311 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|++.|.+||||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 364
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.12 E-value=0.23 Score=48.15 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=31.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 1 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
|-.+-.+++++-+.++..-.. -..+.|+++|.+|+||||+..+|.+.
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~----------g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIED----------NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT----------CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcc----------CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 445556666665555422111 13568999999999999999988864
No 365
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.08 E-value=0.12 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~ 55 (449)
..+.|+++|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.04 E-value=0.12 Score=46.02 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~ 55 (449)
.|+++|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.04 E-value=0.12 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 368
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.02 E-value=0.12 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.87 E-value=0.1 Score=45.03 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.87 E-value=0.16 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|++.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 371
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.80 E-value=0.16 Score=52.32 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
.++++|..|||||||++.|+|.. |-..|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 68899999999999999999963 43345443
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.78 E-value=0.12 Score=44.95 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|++.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 373
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.77 E-value=0.14 Score=52.73 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~ 67 (449)
.++++|..|||||||++.|+|.. +-..|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 325 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGSV 325 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 58899999999999999999963 3334443
No 374
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.71 E-value=0.1 Score=48.84 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 013120 37 IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~ 57 (449)
++++|.+|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.69 E-value=0.14 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.69 E-value=0.13 Score=45.71 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 377
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.66 E-value=0.13 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.62 E-value=0.11 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-++++|.+|+|||||+++|.|.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.54 E-value=0.13 Score=44.68 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
.+.|+++|.++|||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 380
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.53 E-value=0.17 Score=52.99 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=24.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccCcccc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP~~~~~~T 68 (449)
.++++|..|||||||++.|+|.. +-..|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEEE
Confidence 58999999999999999999963 33345443
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.44 E-value=0.14 Score=44.46 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.38 E-value=0.15 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 383
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.38 E-value=0.14 Score=44.31 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.++|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.32 E-value=0.16 Score=43.04 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 385
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.25 E-value=0.12 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|.+|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999964
No 386
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.23 E-value=0.36 Score=41.19 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
+.+++.|.+|+|||+++.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 387
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.23 E-value=0.95 Score=45.08 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP-~IvVvG~~saGKSSllnaL~G~ 57 (449)
..| -|.+.|+||+|||++..|+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 445 4999999999999999999874
No 388
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.22 E-value=0.3 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.+++.|++|+|||++..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999988888875
No 389
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.21 E-value=0.14 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.578 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999963
No 390
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.15 E-value=0.25 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|+++|.+|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.10 E-value=0.063 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 392
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.04 E-value=0.12 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
-.++++|..|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999995
No 393
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.01 E-value=0.14 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999974
No 394
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.98 E-value=0.9 Score=44.72 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPA-IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~-IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+ |.+.|.+|+|||++..|+.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4454 999999999999999999864
No 395
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.94 E-value=0.15 Score=45.25 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.0
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~ 55 (449)
+-.+++|..++||||+++||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467889999999999999986
No 396
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.92 E-value=0.15 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999963
No 397
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.87 E-value=0.17 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
+.|+++|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 398
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.84 E-value=0.13 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|+.|||||||++.|.|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999963
No 399
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.78 E-value=0.17 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999963
No 400
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.68 E-value=0.15 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 59999999999999999999963
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.67 E-value=0.12 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|.+|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.63 E-value=0.16 Score=48.85 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
+..++++|.+|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999984
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.62 E-value=0.18 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 404
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.59 E-value=0.15 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999996
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.52 E-value=0.19 Score=44.24 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.++|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.50 E-value=0.15 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
-..|+++|..+|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 407
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.50 E-value=0.15 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 59999999999999999999963
No 408
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.49 E-value=0.15 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|+++|.+|+|||||+++|.|.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999985
No 409
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.44 E-value=0.18 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
...|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 410
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.43 E-value=1.3 Score=43.82 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPA-IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~-IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+ |.+.|.+|+|||++..|+.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 4554 999999999999999999974
No 411
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.40 E-value=0.18 Score=44.88 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|..+|||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 412
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.39 E-value=0.14 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999996
No 413
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.35 E-value=0.14 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=15.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 414
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.23 E-value=0.17 Score=43.70 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.++|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.21 E-value=0.18 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.18 E-value=0.22 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
|.|++.|.++|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.17 E-value=0.47 Score=43.20 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|++.|.++|||||+.+.|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999963
No 418
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.08 E-value=0.23 Score=44.36 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 419
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.08 E-value=0.18 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
-|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999975
No 420
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.07 E-value=2.8 Score=38.26 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCC--CCceEEEecc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPT--GERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~--~~rti~VltK 212 (449)
..++.|||+|+... ..+...+..+|.+|+++.+..... .....+.+.+... ..+..+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~--~~~~~~~~~l~~~~~~~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAV--ESLDLFNFFVRKLNLFLPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHH--HHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHH--HHHHHHHHHHHHHhccCCEEEEEec
Confidence 36799999998554 225566778999988887654322 2233333333332 3467789999
Q ss_pred ccccCCCCcHHHHHcCcccccCCCeEEEEeCC
Q 013120 213 IDLMDKGTDAADILEGKSYRLKFPWIGVVNRS 244 (449)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (449)
.+......+..+.+.. +..+.+..+.+
T Consensus 207 ~~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 207 FKKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp ECTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred ccCcchHHHHHHHHhc-----CcccceecCcH
Confidence 9543333344555543 34566666544
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.05 E-value=0.21 Score=43.92 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.++|||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 422
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.94 E-value=0.19 Score=43.99 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|+++|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46899999999999999999854
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.94 E-value=0.16 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.+|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999973
No 424
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.77 E-value=0.22 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
-|+|+|.++||||||..+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999975
No 425
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.74 E-value=0.2 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+|+|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 426
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.65 E-value=0.24 Score=42.03 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~ 55 (449)
....|++.|.++|||||+.+.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 45579999999999999999985
No 427
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.64 E-value=0.43 Score=48.56 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCCCCCCCCC-eEEEECCCCCCHHHHHHHhhCC
Q 013120 6 SLVNKIQRACTALGDHGEASALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP-~IvVvG~~saGKSSllnaL~G~ 57 (449)
+....++++...+.... .+..+...+| -|+++|.+|+|||+|+++|.|.
T Consensus 38 ~~k~~l~~lv~~l~~~~---~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNPS---RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHHHHHCGG---GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchh---hhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44556666665554421 2222233444 3999999999999999999985
No 428
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.61 E-value=0.038 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 013120 37 IAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~ 57 (449)
++|+|+.+||||||+++|.|.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578899999999999999996
No 429
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.56 E-value=0.19 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.+||||||+.+.|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 430
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.53 E-value=0.23 Score=46.00 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCC
Q 013120 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDK 218 (449)
Q Consensus 163 ~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~ 218 (449)
.+.++..+.++|+||.|+++..........+ . .+ +.+.++|+||+|+.++
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l--~-ll---~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGV--D-FS---RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCTTS--C-CT---TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcChHH--H-hc---CCCcEEEEECccCCCH
Confidence 3457888999999999887543221111111 1 12 7899999999999874
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.51 E-value=0.24 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 432
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.30 E-value=0.2 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..|.+++.|..|+||||++++|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5677999999999999999999883
No 433
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.29 E-value=0.2 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.++++|.+++|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999997
No 434
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.26 E-value=0.23 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G 56 (449)
..|.++|+|.++||||++|++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999999985
No 435
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=88.24 E-value=0.36 Score=45.29 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccc-hHHHH-HHHHhC----CCCCceEEEecc-ccccCCCC--cHHHHHcCcccc
Q 013120 162 IENMVRSYIEKPNCIILAISPANQDLAT-SDAIK-ISREVD----PTGERTFGVLTK-IDLMDKGT--DAADILEGKSYR 232 (449)
Q Consensus 162 ~~~~~~~yi~~~d~iIl~v~~a~~d~~~-~~~~~-l~~~~~----~~~~rti~VltK-~D~~~~~~--~~~~~l~~~~~~ 232 (449)
++.+.+.|.++.|+||+||+++..+... .+.+. +.+.++ ..+.+.++..|| -|+...-+ ++.+.+.-..
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~-- 277 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL-- 277 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG--
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc--
Confidence 4788999999999999999877654322 22221 212222 246788888897 47643222 2333333222
Q ss_pred cCCCeEE--EEeCChhhhhccCCHHH
Q 013120 233 LKFPWIG--VVNRSQADINKNVDMIA 256 (449)
Q Consensus 233 l~~g~~~--v~~~s~~~~~~~~~~~~ 256 (449)
+...|+. ..+.+++++.++++++.
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHH
Confidence 2457764 45667777766665544
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.10 E-value=0.24 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 013120 37 IAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 37 IvVvG~~saGKSSllnaL~G~~ 58 (449)
++++|..|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 437
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.09 E-value=0.21 Score=45.00 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCc
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKDFLP 61 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~~lP 61 (449)
.++++|.+++|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 58899999999999999999853333
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.08 E-value=0.19 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 439
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=87.92 E-value=0.24 Score=47.74 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.6
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~ 55 (449)
.-.+++|+.++||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999985
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.86 E-value=0.27 Score=43.23 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|..+|||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
No 441
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.84 E-value=1.8 Score=47.53 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHh
Q 013120 36 AIAVVGGQSSGKSSVLESI 54 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL 54 (449)
.++++|..++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999999
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.62 E-value=0.37 Score=43.48 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.++|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 443
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.60 E-value=0.29 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|++.|.+||||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 444
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.48 E-value=0.83 Score=37.75 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999764
No 445
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.47 E-value=0.19 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.+||||||+...|.+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999764
No 446
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.46 E-value=1.8 Score=39.58 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=40.1
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEeccc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKI 213 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti-~VltK~ 213 (449)
..++.|||+|+.... ..+....+..+|.+|+++.+.... .....+..+.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~-------------~~~~~~~~~~aD~viiv~~~~~~s--~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGD-------------APLTVMQDAKPTGVVVVSTPQELT--AVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSS-------------HHHHHHHHHCCSEEEEEECSSSCC--HHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCch-------------HHHHHHhhccCCeEEEEecCccch--HHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 468999999986542 111112223689888887655332 2344445555555566777 688998
Q ss_pred cc
Q 013120 214 DL 215 (449)
Q Consensus 214 D~ 215 (449)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 447
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.35 E-value=0.22 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..++|||||++.|.|.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 448
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.34 E-value=0.6 Score=40.79 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
.+.+++.|.+|+|||+++.++..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999985
No 449
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.25 E-value=0.56 Score=39.85 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
-+.+++.|.+|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
No 450
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.24 E-value=0.31 Score=43.47 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999953
No 451
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.09 E-value=0.61 Score=43.30 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti-~VltK~D 214 (449)
.+++|||+|+...... +......+|.+|+++.+.... ........+.+...+.+.+ +|+|+.|
T Consensus 192 yD~VIIDtpp~~~~~d--------------~~~l~~~aD~vilVv~~~~~~--~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD--------------AQLFSKFTGNVVYVVNSENNN--KDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCSH--------------HHHHHHHHCEEEEEEETTSCC--HHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHHH--------------HHHHHHHCCEEEEEEeCCCCc--HHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 4799999999765321 222345678888888765432 2334445555555567777 5789998
Q ss_pred cc
Q 013120 215 LM 216 (449)
Q Consensus 215 ~~ 216 (449)
..
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 452
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.03 E-value=0.24 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
...+++|..+||||||++||..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999999984
No 453
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=86.83 E-value=0.27 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
...+++|+.++||||++++|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 36889999999999999999863
No 454
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=86.81 E-value=0.28 Score=47.87 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=18.9
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 013120 35 PAIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~ 55 (449)
.-.+++|+.||||||+|+||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999985
No 455
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.77 E-value=0.3 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.+|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999975
No 456
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=86.44 E-value=0.28 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~~ 58 (449)
...+++|..|+|||||+++|.+..
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 368999999999999999999853
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.33 E-value=0.36 Score=44.15 Aligned_cols=21 Identities=57% Similarity=0.711 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+|.|.++|||||+.+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 458
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.33 E-value=0.097 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|..||||||||++|.+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.30 E-value=0.36 Score=45.25 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999985
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.28 E-value=0.65 Score=38.35 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|.+.|.+|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4889999999999999999864
No 461
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.12 E-value=0.86 Score=41.01 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHh---CCCCCceEEEecc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV---DPTGERTFGVLTK 212 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~---~~~~~rti~VltK 212 (449)
.++.|||+|+.... .+...+..+|.+|+++.+...+ ......+.+.+ .....+..+|+|+
T Consensus 119 yD~viiD~p~~~~~---------------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~N~ 181 (245)
T 3ea0_A 119 YDYIIVDFGASIDH---------------VGVWVLEHLDELCIVTTPSLQS--LRRAGQLLKLCKEFEKPISRIEIILNR 181 (245)
T ss_dssp CSEEEEEEESSCCT---------------THHHHGGGCSEEEEEECSSHHH--HHHHHHHHHHHHTCSSCCSCEEEEEES
T ss_pred CCEEEEeCCCCCch---------------HHHHHHHHCCEEEEEecCcHHH--HHHHHHHHHHHHHhCCCccceEEEEec
Confidence 57999999986542 1456678899998887654322 22333334433 3334567789999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
.|.-.
T Consensus 182 ~~~~~ 186 (245)
T 3ea0_A 182 ADTNS 186 (245)
T ss_dssp TTSCT
T ss_pred CCCCC
Confidence 98653
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.06 E-value=0.46 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
+.|+|+|.++||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999743
No 463
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=86.04 E-value=1.1 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.++++|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5899999999999999998653
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.88 E-value=0.46 Score=43.17 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
..|++.|.++|||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999983
No 465
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=85.84 E-value=9.3 Score=36.20 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=20.5
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhC
Q 013120 33 SLPA-IAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 33 ~lP~-IvVvG~~saGKSSllnaL~G 56 (449)
++|. +++.|.+|+|||++..++..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHH
Confidence 4565 88999999999999998874
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.83 E-value=0.35 Score=43.73 Aligned_cols=23 Identities=43% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
...|+++|..+|||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 467
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.81 E-value=0.44 Score=42.51 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
-+.+++.|.+|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999863
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.69 E-value=0.26 Score=56.37 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|++||..|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5999999999999999999985
No 469
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.65 E-value=0.3 Score=45.47 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.++++|..|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.63 E-value=0.26 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999963
No 471
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=85.62 E-value=1.8 Score=46.72 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..++||||+|+.|.|..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999999853
No 472
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.59 E-value=0.39 Score=46.56 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|.++|.|.+|+||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999874
No 473
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.57 E-value=0.36 Score=45.11 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~ 55 (449)
.|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 474
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=85.52 E-value=1.1 Score=42.05 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEecccc
Q 013120 136 VNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTF-GVLTKID 214 (449)
Q Consensus 136 ~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti-~VltK~D 214 (449)
.+++|||||+...... +......+|.+|+|+.+..... .......+.+...+.+.+ +|+|++|
T Consensus 202 yD~VIIDtpp~~~~~d--------------a~~l~~~aD~vllVv~~~~~~~--~~~~~~~~~l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD--------------AAIVGRHVGTTLMVARYAVNTL--KEVETSLSRFEQNGIPVKGVILNSIF 265 (286)
T ss_dssp CSEEEEECCCTTTCTH--------------HHHHTTTCSEEEEEEETTTSBH--HHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CCEEEEcCCCCcchHH--------------HHHHHHHCCeEEEEEeCCCCcH--HHHHHHHHHHHhCCCCEEEEEEcCcc
Confidence 4789999999876421 3344567999988887654332 333344444544455554 5789998
Q ss_pred ccC
Q 013120 215 LMD 217 (449)
Q Consensus 215 ~~~ 217 (449)
.-.
T Consensus 266 ~~~ 268 (286)
T 3la6_A 266 RRA 268 (286)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 475
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.44 E-value=0.42 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G 56 (449)
..|.++|+|.+++|||++|++|+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999999875
No 476
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.41 E-value=0.47 Score=42.18 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|.|+|||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999853
No 477
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.24 E-value=0.72 Score=40.87 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=41.6
Q ss_pred CCCcEEEeCCCC-CcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCC-CCCceEEEecc
Q 013120 135 VVNLTLIDLPGL-TKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP-TGERTFGVLTK 212 (449)
Q Consensus 135 ~~~l~lvDtPGl-~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~-~~~rti~VltK 212 (449)
..++.+||+||. ... .+...+..+|.+|+++.+...+. .....+.+.+.. .+.+..+|+|+
T Consensus 67 ~yD~viiD~p~~~~~~---------------~~~~~l~~aD~viiv~~~~~~~~--~~~~~~~~~l~~~~~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------------DLEALADGCDLLVIPSTPDALAL--DALMLTIETLQKLGNNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS---------------HHHHHHHTSSEEEEEECSSHHHH--HHHHHHHHHHHHTCSSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH---------------HHHHHHHHCCEEEEEecCCchhH--HHHHHHHHHHHhccCCCEEEEEEe
Confidence 458999999987 442 24566778999888876543222 222233333332 15667889999
Q ss_pred ccccC
Q 013120 213 IDLMD 217 (449)
Q Consensus 213 ~D~~~ 217 (449)
.|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 98654
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.16 E-value=0.37 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.+++||..|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 5999999999999999999996
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.07 E-value=0.65 Score=44.61 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
+.|+|+|.+++|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 480
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.96 E-value=0.6 Score=47.18 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCCCCCCCCC-eEEEECCCCCCHHHHHHHhhCC
Q 013120 6 SLVNKIQRACTALGDHGEASALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lP-~IvVvG~~saGKSSllnaL~G~ 57 (449)
+....|+++...+.... ....+...+| -|+++|.+|+|||+|+.+|.+.
T Consensus 23 ~~~~~l~e~v~~l~~~~---~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 23 EAIEELKEVVEFLKDPS---KFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHHHCTH---HHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChH---HHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34555555555444321 1111112344 4899999999999999999974
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.83 E-value=0.4 Score=44.15 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
...|+|.|..||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999854
No 482
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.81 E-value=0.55 Score=41.03 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G~ 57 (449)
.-|++.|.+|+|||+|+.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
No 483
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.53 E-value=0.3 Score=47.43 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=30.5
Q ss_pred HhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccccccCCC
Q 013120 169 YIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKG 219 (449)
Q Consensus 169 yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~~rti~VltK~D~~~~~ 219 (449)
.+.+.|.+++| ++...++.....-+++......+.+.++|+||+|+.++.
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 36789988765 445443333322223222223478889999999998753
No 484
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.31 E-value=0.46 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.+++||..|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999996
No 485
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.16 E-value=0.52 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
+.|+|+|.++||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578899999999999999974
No 486
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.12 E-value=0.57 Score=41.46 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
-|+++|.+++|||+|..+|..+
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999865
No 487
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=83.92 E-value=2.3 Score=38.41 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=42.4
Q ss_pred CCCcEEEeCCCCCcCCcCCCCCchHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHhCCCC---------Cc
Q 013120 135 VVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG---------ER 205 (449)
Q Consensus 135 ~~~l~lvDtPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~d~iIl~v~~a~~d~~~~~~~~l~~~~~~~~---------~r 205 (449)
..++.|||+|+-.. ..+...+..+|.+|+++.+.. ........+.+.+...+ .+
T Consensus 113 ~yD~viiD~p~~~~---------------~~~~~~l~~ad~vi~v~~~~~--~s~~~~~~~~~~l~~~~~~~~~~~~~~~ 175 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE---------------TGALMALYFADEAIITTNPEV--SSVRDSDRILGILASKSRRAENGEEPIK 175 (260)
T ss_dssp TCSEEEEECCSSSS---------------HHHHHHHHTCSEEEEEECSSH--HHHHHHHHHHHHHTTSSHHHHTTCSCCE
T ss_pred CCCEEEEcCCCCCC---------------HHHHHHHHhCCEEEEEecCCh--hHHHHHHHHHHHHHHhccccccccCCcc
Confidence 35799999998543 135566778999988876543 22334444555555433 46
Q ss_pred eEEEecccccc
Q 013120 206 TFGVLTKIDLM 216 (449)
Q Consensus 206 ti~VltK~D~~ 216 (449)
..+|+|+.|..
T Consensus 176 ~~~v~N~~~~~ 186 (260)
T 3q9l_A 176 EHLLLTRYNPG 186 (260)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEecCCcc
Confidence 77889999853
No 488
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.89 E-value=0.27 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999985
No 489
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.65 E-value=0.61 Score=41.85 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=18.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
+.|+++|.|+|||+|.-..|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467789999999999998885
No 490
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.46 E-value=0.59 Score=45.79 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.-+.++|+|.+++|||++++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999753
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.16 E-value=0.59 Score=46.34 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+++|.++|||||+.+.|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488899999999999999975
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.06 E-value=0.57 Score=42.44 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~ 57 (449)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.89 E-value=0.39 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=17.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G 56 (449)
-+.|+|.|..+|||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 494
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.82 E-value=0.51 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 013120 36 AIAVVGGQSSGKSSVLESIVGKD 58 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G~~ 58 (449)
.++++|..|||||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999543
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.74 E-value=1.5 Score=41.63 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 013120 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 33 ~lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
..+.|++.|.+|+|||+++.++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 496
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.65 E-value=2 Score=38.92 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 013120 35 PAIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 35 P~IvVvG~~saGKSSllnaL~G 56 (449)
+-|++.|.+|+|||++..++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999986
No 497
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.63 E-value=0.73 Score=40.76 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.+++.|.+|+|||+++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.55 E-value=0.51 Score=49.96 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.2
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 013120 36 AIAVVGGQSSGKSSVLESIV 55 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~ 55 (449)
.++++|..|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48999999999999999875
No 499
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.81 E-value=1.2 Score=41.07 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 013120 34 LPAIAVVGGQSSGKSSVLESIVGK 57 (449)
Q Consensus 34 lP~IvVvG~~saGKSSllnaL~G~ 57 (449)
.+.+++.|.+|+|||++..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999863
No 500
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.74 E-value=0.74 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 013120 36 AIAVVGGQSSGKSSVLESIVG 56 (449)
Q Consensus 36 ~IvVvG~~saGKSSllnaL~G 56 (449)
.|+|+|.++||||||...|..
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 689999999999999999885
Done!