Query 013123
Match_columns 449
No_of_seqs 169 out of 323
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 9.8E-17 3.3E-21 165.1 32.0 353 9-370 80-448 (460)
2 3mkt_A Multi antimicrobial ext 98.8 2.4E-07 8.2E-12 94.6 18.6 201 159-368 11-217 (460)
3 2knc_B Integrin beta-3; transm 6.3 8.2E+02 0.028 18.0 5.0 26 418-443 24-49 (79)
4 3arc_Z Photosystem II reaction 5.2 2.9E+02 0.0099 19.7 1.6 32 274-306 29-60 (62)
5 2ajj_A NS5A, nonstructural pro 5.1 6E+02 0.02 15.1 2.6 19 171-189 9-27 (28)
6 3ogl_Q JAZ1 incomplete degron 4.1 5.8E+02 0.02 14.1 1.9 16 433-448 5-20 (21)
7 1s4x_A Integrin beta-3; cell a 3.2 6.4E+02 0.022 18.1 2.2 31 415-445 9-39 (67)
8 4hkr_A Calcium release-activat 2.9 2.4E+03 0.081 18.7 8.0 33 14-46 106-139 (214)
9 3b9w_A Ammonium transporter fa 2.6 3.2E+03 0.11 19.6 9.8 22 406-427 257-278 (407)
10 4gip_A Fusion glycoprotein F2; 2.4 1.1E+03 0.037 17.6 2.6 27 199-226 47-73 (81)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.79 E-value=9.8e-17 Score=165.06 Aligned_cols=353 Identities=12% Similarity=0.028 Sum_probs=253.7
Q ss_pred CcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 013123 9 GASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLL 82 (449)
Q Consensus 9 ~~~~~~~~~~v~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~~l~ 82 (449)
+..|+++-++..+.+. +.+..+++++++ ..+.-........+|. ..-+++++.+.....+.......+|-.-+
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 158 (460)
T 3mkt_A 80 GAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL 158 (460)
T ss_dssp SSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSC
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344455566666665 777777776654 2222111122223332 13367788888888888888888888889
Q ss_pred hhhHhHHHHHHHHHhHHHHHhHhhh-c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCccccc
Q 013123 83 LRLRLVVETVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYD 159 (449)
Q Consensus 83 f~~~~~~e~~a~~~~~v~~i~la~~-~--~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (449)
+|.-+.....+.+++.+..+.+... . ++ +++.+.+++.....+...+..+.+..+++..+..+..+...+.+...-
T Consensus 159 ~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (460)
T 3mkt_A 159 TKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL 237 (460)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSST
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHH
Confidence 9999999999999988888776632 1 13 566666666666555544443333333222111111011001111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013123 160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGNLVVRMVFLPFEESSYATFARSASGQYPQKSKK 239 (449)
Q Consensus 160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~if~PIee~~~~~Fs~~~~~~~~~~~~~ 239 (449)
|++++++.+...+++...+..+.|+.+++++ +.++.|.|++++++.+++. .+...+..+..|..++...++|.++
T Consensus 238 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~--- 312 (460)
T 3mkt_A 238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKG--- 312 (460)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCT---
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHH---
Confidence 8899999999999999999999999999999 8899999999999999988 6667999999999999987665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013123 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 319 (449)
Q Consensus 240 l~~~~~~~l~~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~ 319 (449)
.++.+++.++....+++++..+....+++++.++.+|+.....+.+++++++...++.+++.+.+..+++.++++.....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44457778899999999988888899999999888776543335679999999999999999999999999999887776
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013123 320 NDSLLVFSVIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKHYFQ 370 (449)
Q Consensus 320 ~~~m~~~si~~~~~~~~l~~~-------~G~~Gli~an~inm~~ri~~s~~~i~~~~~ 370 (449)
+..-. .++.++..+.+... +|..|..++..+...++.....+..+|..+
T Consensus 393 ~~~~~--~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 393 TFISY--WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHHH--HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63211 13445566667777 899999999999999888777766655543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.76 E-value=2.4e-07 Score=94.65 Aligned_cols=201 Identities=12% Similarity=0.073 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhh
Q 013123 159 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGNLVVRMVFLPFEESSYATFARSASGQYPQKSK 238 (449)
Q Consensus 159 ~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~if~PIee~~~~~Fs~~~~~~~~~~~~ 238 (449)
.|++++++..+..+++...+++-.|..++++ .++++.|.|++++++..+ ...+...+.....|..++...++|+ +
T Consensus 11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~---~ 85 (460)
T 3mkt_A 11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQ---H 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSST---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCh---h
Confidence 3889999999999999999999999999999 789999999999999554 4555667888888888887655433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013123 239 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 318 (449)
Q Consensus 239 ~l~~~~~~~l~~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~ 318 (449)
+.++.+...+.....+++++... ...+++++.++.++.-....+..++++++...|+..++....+++++.++++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 35555666777777777775543 56667776644333211112335788888899999999999999999999976665
Q ss_pred hhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013123 319 SNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFIKHY 368 (449)
Q Consensus 319 ~~~~m~~~si~~~~~~~~l~~------~~G~~Gli~an~inm~~ri~~s~~~i~~~ 368 (449)
.+.... ++-+...+.+.. .+|..|.+++..+...+.......+..+.
T Consensus 165 ~~~~~~---~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 165 IGFIGL---LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHH---HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH---HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 553333 333444454554 37999999999888777777776666554
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.29 E-value=8.2e+02 Score=18.01 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 013123 418 VGLTCFCISSIVIYHRERSFIYKIIR 443 (449)
Q Consensus 418 ~G~~~~~~~~~~~~~~e~~~l~~~~~ 443 (449)
+|++++++.-++...++|.-..++-+
T Consensus 24 iGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333444444444444433
No 4
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=5.22 E-value=2.9e+02 Score=19.74 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=22.2
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHH
Q 013123 274 YGKKWSDGEASTALRYYCLYVVVLAMNGTSEAF 306 (449)
Q Consensus 274 lG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf 306 (449)
-.+.|.++. ..+..--..++.+--++|+...|
T Consensus 29 sp~~W~~sK-~~v~~g~~lW~~LV~lvgilnsf 60 (62)
T 3arc_Z 29 SPQDWDRSK-QLIFLGSGLWIALVLVVGVLNFF 60 (62)
T ss_dssp CSSCHHHHH-HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcchhhhh-ceeeeHHHHHHHHHHHHHHHHhh
Confidence 448898864 34677666777777777877544
No 5
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=5.06 E-value=6e+02 Score=15.07 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhHHHHhh
Q 013123 171 FQSFRKLLLQEGEKLVLVW 189 (449)
Q Consensus 171 ~q~ilk~lltegdklii~~ 189 (449)
.+++=|++.....|+++|.
T Consensus 9 l~~lh~~~~~~ikk~~lgW 27 (28)
T 2ajj_A 9 IYSLHKQINRGLKKIVLGW 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4677788888888888874
No 6
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=4.06 E-value=5.8e+02 Score=14.10 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHhhcCC
Q 013123 433 RERSFIYKIIRFRNHK 448 (449)
Q Consensus 433 ~e~~~l~~~~~~~~~~ 448 (449)
..+.-++.+..||++|
T Consensus 5 aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDR 20 (26)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3455677777777665
No 7
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=3.23 E-value=6.4e+02 Score=18.14 Aligned_cols=31 Identities=19% Similarity=-0.008 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 013123 415 HFSVGLTCFCISSIVIYHRERSFIYKIIRFR 445 (449)
Q Consensus 415 ~i~~G~~~~~~~~~~~~~~e~~~l~~~~~~~ 445 (449)
|-++|++++++.=+++...++.-..++-+.|
T Consensus 9 ~~liGl~lLliwKll~~i~DrrEyakFE~Er 39 (67)
T 1s4x_A 9 HSSGLVPRGSHMKLLITIHDRKEFAKFEEER 39 (67)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677777777765566666666666655444
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=2.93 E-value=2.4e+03 Score=18.70 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=23.2
Q ss_pred hhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhc
Q 013123 14 ENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQG 46 (449)
Q Consensus 14 ~~~~~v~n~~w-l~i~~g~~~~~~~~~~~~~~~~ 46 (449)
+.+...+.++| .+..+|+++-++-.....|...
T Consensus 106 ~r~~~yIE~AW~fST~lGi~LFL~evall~WVKF 139 (214)
T 4hkr_A 106 ERLHWYIETAWAFSTLLGLILFLLEIAILCWVKF 139 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEe
Confidence 34888999999 9999998887664433334433
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=2.62 E-value=3.2e+03 Score=19.61 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 013123 406 QDFWATFLIHFSVGLTCFCISS 427 (449)
Q Consensus 406 ~~~~~~l~~~i~~G~~~~~~~~ 427 (449)
.++|..++++++.|++|+...-
T Consensus 257 v~p~~A~iIG~iaG~i~~~~~~ 278 (407)
T 3b9w_A 257 VGPVGAFVIGLLGGAISVVGFV 278 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888888888765543
No 10
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=2.40 E-value=1.1e+03 Score=17.61 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=19.4
Q ss_pred HHHHhhhhhHHHHHHhhhhhhhhHHHHH
Q 013123 199 YGLVDKLGNLVVRMVFLPFEESSYATFA 226 (449)
Q Consensus 199 Y~la~nlgsl~ar~if~PIee~~~~~Fs 226 (449)
-+-+++|-.++.|++- ||+|+..-.=.
T Consensus 47 ~~~v~~Ynktlt~lL~-Pi~daL~~I~~ 73 (81)
T 4gip_A 47 ITSISSYNATVTKLLQ-PIGENLETIRN 73 (81)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 4567788888887765 99998765433
Done!