Query 013123
Match_columns 449
No_of_seqs 169 out of 323
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 04:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013123.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013123hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90n_ f.23.27.1 (N:) PetN su 5.6 2.6E+02 0.019 15.2 3.1 11 18-28 4-14 (31)
2 d2bl8a1 a.29.8.2 (A:4-103) Ent 4.4 4.8E+02 0.035 18.5 4.4 40 214-253 21-60 (100)
3 d1pfva1 a.27.1.1 (A:389-550) M 4.1 4.2E+02 0.03 19.9 4.4 40 237-276 82-121 (162)
4 d1eg3a2 a.39.1.7 (A:210-306) D 3.2 6E+02 0.044 17.8 4.0 40 217-256 2-41 (97)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 3.2 7.1E+02 0.052 16.8 5.5 10 438-447 94-103 (103)
6 d2d5ba1 a.27.1.1 (A:349-500) M 2.9 5.5E+02 0.04 18.8 3.9 38 237-274 83-120 (152)
7 d1jb0x_ f.23.20.1 (X:) Subunit 2.7 4.7E+02 0.034 13.7 2.7 18 294-311 11-28 (29)
8 d2e74d2 f.23.12.1 (D:12-45) IS 2.4 5.6E+02 0.041 14.1 3.2 19 17-35 5-23 (34)
9 d3cx5d2 f.23.11.1 (D:261-307) 2.3 7.2E+02 0.052 15.0 3.7 20 316-335 6-26 (47)
10 d1jb0j_ f.23.18.1 (J:) Subunit 2.0 6.6E+02 0.048 14.6 2.4 17 18-34 12-28 (41)
No 1
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.61 E-value=2.6e+02 Score=15.23 Aligned_cols=11 Identities=9% Similarity=0.561 Sum_probs=7.5
Q ss_pred HHHHHHHhHhH
Q 013123 18 KLLKVAWLTLP 28 (449)
Q Consensus 18 ~v~n~~wl~i~ 28 (449)
-++|.+|-.+.
T Consensus 4 ~iv~~awaa~~ 14 (31)
T d1q90n_ 4 AIVQIGWAATC 14 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred EEEEhHHHHHH
Confidence 37899995443
No 2
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=4.42 E-value=4.8e+02 Score=18.51 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=23.5
Q ss_pred hhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHH
Q 013123 214 FLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 253 (449)
Q Consensus 214 f~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l~~~~~ 253 (449)
..||+++.--...|+-+.+..++++.+.+.+-.+++..+.
T Consensus 21 y~dI~dvL~~V~~K~d~~k~~~~p~al~nrLV~YI~~~a~ 60 (100)
T d2bl8a1 21 YSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFTAY 60 (100)
T ss_dssp GHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHH
Confidence 4499999999999986654334566666655556665544
No 3
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=4.11 E-value=4.2e+02 Score=19.86 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC
Q 013123 237 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK 276 (449)
Q Consensus 237 ~~~l~~~~~~~l~~~~~l~~~~~~~g~~~s~~ll~lllG~ 276 (449)
.+++...+...+...-.++..+-||.|-.|.-+...+.-+
T Consensus 82 ~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~ 121 (162)
T d1pfva1 82 DADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 121 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC
Confidence 3456667777888888888888899999999998876543
No 4
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.19 E-value=6e+02 Score=17.80 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHH
Q 013123 217 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGL 256 (449)
Q Consensus 217 Iee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~ 256 (449)
+||-.+=.|+++.+.+..-+.+++...++..+++-..+|=
T Consensus 2 L~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE 41 (97)
T d1eg3a2 2 LEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGE 41 (97)
T ss_dssp HHHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCc
Confidence 4666777888886544444556677777888887776654
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.16 E-value=7.1e+02 Score=16.83 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=5.2
Q ss_pred HHHHHHhhcC
Q 013123 438 IYKIIRFRNH 447 (449)
Q Consensus 438 l~~~~~~~~~ 447 (449)
..+..++|+|
T Consensus 94 ~~~~~~rr~h 103 (103)
T d1r3jc_ 94 VGREQERRGH 103 (103)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 3334456677
No 6
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=2.89 E-value=5.5e+02 Score=18.77 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHc
Q 013123 237 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 274 (449)
Q Consensus 237 ~~~l~~~~~~~l~~~~~l~~~~~~~g~~~s~~ll~lll 274 (449)
.++.+.++...+...-.++..+-++.|-.|..+...+.
T Consensus 83 ~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg 120 (152)
T d2d5ba1 83 PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALG 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcC
Confidence 34566666667777777888888888989999888664
No 7
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=2.69 E-value=4.7e+02 Score=13.75 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=12.5
Q ss_pred HHHHHhhhhHHHHHHhhC
Q 013123 294 VVVLAMNGTSEAFLHAVA 311 (449)
Q Consensus 294 i~~la~Ngi~eaf~~a~~ 311 (449)
..++++|-+..++..+.+
T Consensus 11 ~lllainflvaayyfaaa 28 (29)
T d1jb0x_ 11 VLLLAINFLVAAYYFAAA 28 (29)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457788888877766543
No 8
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.45 E-value=5.6e+02 Score=14.09 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=13.5
Q ss_pred HHHHHHHHhHhHHHHHHHH
Q 013123 17 AKLLKVAWLTLPLGIFITI 35 (449)
Q Consensus 17 ~~v~n~~wl~i~~g~~~~~ 35 (449)
+|..|+.|....-|..+..
T Consensus 5 rqfmnlltfgt~tg~alg~ 23 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGA 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhh
Confidence 5789999987666665543
No 9
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.29 E-value=7.2e+02 Score=14.95 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=9.4
Q ss_pred HHHhh-hHHHHHHHHHHHHHH
Q 013123 316 LKRSN-DSLLVFSVIYIVMNV 335 (449)
Q Consensus 316 l~~~~-~~m~~~si~~~~~~~ 335 (449)
=.+.+ +.+++++++++.+.|
T Consensus 6 RK~mg~K~~~i~s~l~~~~~y 26 (47)
T d3cx5d2 6 RKRLGLKTVIILSSLYLLSIW 26 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33444 445555555544433
No 10
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.04 E-value=6.6e+02 Score=14.64 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=11.9
Q ss_pred HHHHHHHhHhHHHHHHH
Q 013123 18 KLLKVAWLTLPLGIFIT 34 (449)
Q Consensus 18 ~v~n~~wl~i~~g~~~~ 34 (449)
-|+.+.|+++.-|+.+-
T Consensus 12 PVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 12 PVLAAIWMTITAGILIE 28 (41)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37778888877776554
Done!