Query 013124
Match_columns 449
No_of_seqs 408 out of 3511
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 00:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2338 Transcriptional effect 100.0 9.5E-40 2.1E-44 322.0 18.3 356 46-443 116-494 (495)
2 PLN03144 Carbon catabolite rep 100.0 1.4E-35 3E-40 307.7 18.1 190 43-241 251-482 (606)
3 COG5239 CCR4 mRNA deadenylase, 99.9 1.2E-24 2.7E-29 206.9 7.9 257 46-320 30-339 (378)
4 PRK11756 exonuclease III; Prov 99.9 5.6E-21 1.2E-25 184.6 16.8 192 47-280 1-236 (268)
5 TIGR03395 sphingomy sphingomye 99.8 6.3E-20 1.4E-24 177.8 18.1 200 47-281 1-245 (283)
6 KOG0620 Glucose-repressible al 99.8 4E-21 8.7E-26 189.8 5.0 249 46-305 19-308 (361)
7 COG0708 XthA Exonuclease III [ 99.8 4.1E-19 9E-24 166.2 14.4 188 47-280 1-229 (261)
8 TIGR00195 exoDNase_III exodeox 99.8 2.7E-18 5.8E-23 164.6 16.9 187 47-279 1-223 (254)
9 COG3568 ElsH Metal-dependent h 99.8 1.6E-18 3.5E-23 161.9 12.1 187 47-280 10-228 (259)
10 KOG3873 Sphingomyelinase famil 99.8 1.3E-18 2.9E-23 165.3 9.2 204 46-280 8-257 (422)
11 PRK13911 exodeoxyribonuclease 99.8 2.3E-17 5E-22 157.0 16.3 191 47-280 1-223 (250)
12 TIGR00633 xth exodeoxyribonucl 99.7 1E-16 2.2E-21 153.5 17.6 190 47-279 1-227 (255)
13 PRK05421 hypothetical protein; 99.7 2E-16 4.4E-21 152.2 15.0 143 44-228 41-197 (263)
14 PF03372 Exo_endo_phos: Endonu 99.6 4.6E-15 1E-19 139.2 14.4 139 81-229 17-172 (249)
15 smart00476 DNaseIc deoxyribonu 99.6 1.6E-14 3.5E-19 138.3 17.7 156 45-234 16-200 (276)
16 PTZ00297 pantothenate kinase; 99.6 1.7E-14 3.8E-19 164.8 18.1 156 43-225 7-207 (1452)
17 KOG2756 Predicted Mg2+-depende 99.4 1.9E-12 4.1E-17 119.0 12.0 182 46-264 99-290 (349)
18 PRK15251 cytolethal distending 99.3 2.7E-11 5.9E-16 114.4 15.4 183 46-284 24-241 (271)
19 KOG0037 Ca2+-binding protein, 99.3 2E-12 4.4E-17 116.0 4.5 101 307-413 56-161 (221)
20 cd05022 S-100A13 S-100A13: S-1 99.2 9.2E-12 2E-16 98.8 5.6 69 304-378 4-75 (89)
21 COG2374 Predicted extracellula 99.2 1.5E-10 3.3E-15 120.4 11.9 238 43-292 460-745 (798)
22 COG5126 FRQ1 Ca2+-binding prot 99.2 7.7E-11 1.7E-15 102.7 8.0 78 295-378 77-156 (160)
23 cd05027 S-100B S-100B: S-100B 99.1 1.5E-10 3.3E-15 91.9 6.6 69 304-378 4-79 (88)
24 KOG0027 Calmodulin and related 99.1 2.8E-10 6.2E-15 100.2 8.0 66 307-378 84-149 (151)
25 PF13499 EF-hand_7: EF-hand do 99.1 2E-10 4.4E-15 86.1 5.9 61 310-376 2-66 (66)
26 KOG0027 Calmodulin and related 99.0 6.2E-10 1.3E-14 98.0 5.8 100 305-410 5-119 (151)
27 COG3021 Uncharacterized protei 99.0 1.3E-09 2.8E-14 104.2 7.9 185 45-279 87-282 (309)
28 cd05026 S-100Z S-100Z: S-100Z 99.0 1.3E-09 2.9E-14 87.6 6.3 73 304-378 6-81 (93)
29 cd05029 S-100A6 S-100A6: S-100 98.9 1.6E-09 3.5E-14 86.0 6.4 69 304-378 6-79 (88)
30 cd05025 S-100A1 S-100A1: S-100 98.9 3.1E-09 6.6E-14 85.4 6.7 73 304-378 5-80 (92)
31 cd05031 S-100A10_like S-100A10 98.9 2.8E-09 6E-14 86.0 5.8 72 305-382 5-83 (94)
32 COG5126 FRQ1 Ca2+-binding prot 98.9 1.7E-09 3.8E-14 94.3 4.9 103 304-413 16-129 (160)
33 smart00027 EH Eps15 homology d 98.8 6.8E-09 1.5E-13 84.0 6.5 66 305-378 7-72 (96)
34 KOG0028 Ca2+-binding protein ( 98.8 1.3E-08 2.8E-13 87.1 8.0 68 304-377 102-169 (172)
35 cd00052 EH Eps15 homology doma 98.8 7.7E-09 1.7E-13 77.5 6.0 60 311-378 2-61 (67)
36 PF13833 EF-hand_8: EF-hand do 98.8 1.2E-08 2.7E-13 73.1 6.5 49 324-377 3-52 (54)
37 cd05023 S-100A11 S-100A11: S-1 98.8 1.6E-08 3.5E-13 80.4 6.5 75 304-378 5-80 (89)
38 cd00213 S-100 S-100: S-100 dom 98.7 1.7E-08 3.7E-13 80.3 5.7 72 305-378 5-79 (88)
39 KOG0028 Ca2+-binding protein ( 98.7 2.1E-08 4.6E-13 85.8 4.8 103 305-413 30-143 (172)
40 KOG0031 Myosin regulatory ligh 98.6 9.7E-08 2.1E-12 81.2 7.9 77 295-377 86-164 (171)
41 PTZ00184 calmodulin; Provision 98.6 3.6E-08 7.8E-13 85.8 4.8 101 305-411 8-119 (149)
42 cd00051 EFh EF-hand, calcium b 98.6 1.5E-07 3.2E-12 68.4 6.7 61 310-376 2-62 (63)
43 PTZ00183 centrin; Provisional 98.6 7.4E-08 1.6E-12 84.9 5.4 98 306-409 15-123 (158)
44 cd05030 calgranulins Calgranul 98.5 1.7E-07 3.7E-12 74.5 5.5 69 304-378 4-79 (88)
45 PF14658 EF-hand_9: EF-hand do 98.5 4.9E-07 1.1E-11 66.5 6.6 61 312-377 2-63 (66)
46 KOG0030 Myosin essential light 98.5 4.8E-07 1E-11 75.7 7.1 65 307-378 87-151 (152)
47 PTZ00183 centrin; Provisional 98.5 5.7E-07 1.2E-11 79.2 8.1 66 307-378 89-154 (158)
48 KOG0037 Ca2+-binding protein, 98.4 8E-07 1.7E-11 80.3 8.7 80 308-393 124-207 (221)
49 KOG0031 Myosin regulatory ligh 98.4 4.3E-07 9.4E-12 77.3 6.2 96 304-409 28-134 (171)
50 smart00128 IPPc Inositol polyp 98.4 1.9E-06 4.2E-11 84.8 11.5 95 119-225 91-193 (310)
51 PTZ00184 calmodulin; Provision 98.4 8.2E-07 1.8E-11 77.2 7.9 65 307-377 83-147 (149)
52 KOG0036 Predicted mitochondria 98.4 4.1E-07 8.9E-12 89.0 5.3 102 305-411 11-117 (463)
53 KOG0034 Ca2+/calmodulin-depend 98.4 6.6E-07 1.4E-11 80.8 6.2 67 308-379 104-176 (187)
54 cd00252 SPARC_EC SPARC_EC; ext 98.3 9.1E-07 2E-11 73.8 5.7 63 305-377 45-107 (116)
55 KOG0041 Predicted Ca2+-binding 98.3 1.3E-06 2.8E-11 77.5 6.3 72 304-382 95-166 (244)
56 cd05024 S-100A10 S-100A10: A s 98.2 5.2E-06 1.1E-10 65.5 6.6 70 305-378 5-76 (91)
57 PF00036 EF-hand_1: EF hand; 98.1 5.5E-06 1.2E-10 51.1 3.6 27 351-377 1-27 (29)
58 PLN02964 phosphatidylserine de 97.9 1.5E-05 3.3E-10 84.6 6.2 63 310-378 181-243 (644)
59 KOG0036 Predicted mitochondria 97.9 2.8E-05 6.1E-10 76.4 7.4 72 301-378 75-146 (463)
60 KOG0038 Ca2+-binding kinase in 97.8 7.5E-05 1.6E-09 63.1 7.9 66 308-378 108-177 (189)
61 PF00036 EF-hand_1: EF hand; 97.8 1E-05 2.3E-10 49.8 2.1 29 309-338 1-29 (29)
62 KOG0377 Protein serine/threoni 97.8 5.2E-05 1.1E-09 74.9 7.8 71 304-376 543-613 (631)
63 KOG0030 Myosin essential light 97.8 1.7E-05 3.6E-10 66.6 3.4 99 306-410 9-122 (152)
64 KOG0044 Ca2+ sensor (EF-Hand s 97.8 8.4E-05 1.8E-09 67.3 7.6 90 284-377 79-174 (193)
65 PLN02964 phosphatidylserine de 97.7 4.3E-05 9.3E-10 81.3 6.2 89 303-400 138-239 (644)
66 PF12763 EF-hand_4: Cytoskelet 97.7 9.1E-05 2E-09 60.5 6.5 64 306-378 8-71 (104)
67 KOG0044 Ca2+ sensor (EF-Hand s 97.6 0.00011 2.4E-09 66.6 6.5 77 295-377 49-127 (193)
68 PF13405 EF-hand_6: EF-hand do 97.6 4.7E-05 1E-09 47.7 2.1 29 310-339 2-31 (31)
69 PF13202 EF-hand_5: EF hand; P 97.4 0.00027 5.8E-09 41.9 3.5 24 352-375 1-24 (25)
70 PF14788 EF-hand_10: EF hand; 97.3 0.0007 1.5E-08 47.1 5.6 46 326-376 2-47 (51)
71 KOG0566 Inositol-1,4,5-triphos 97.2 0.0013 2.8E-08 71.0 8.9 104 122-237 629-741 (1080)
72 PRK12309 transaldolase/EF-hand 97.2 0.00089 1.9E-08 67.6 7.0 52 307-377 333-384 (391)
73 KOG0046 Ca2+-binding actin-bun 97.1 0.00075 1.6E-08 68.4 6.1 71 304-378 15-85 (627)
74 KOG4223 Reticulocalbin, calume 97.0 0.00057 1.2E-08 65.6 3.8 64 311-379 166-229 (325)
75 KOG4065 Uncharacterized conser 97.0 0.0015 3.3E-08 53.0 5.3 64 311-375 70-142 (144)
76 PF13202 EF-hand_5: EF hand; P 96.9 0.00049 1.1E-08 40.8 1.7 25 310-335 1-25 (25)
77 PF13405 EF-hand_6: EF-hand do 96.7 0.0021 4.7E-08 40.1 3.5 27 351-377 1-27 (31)
78 KOG0040 Ca2+-binding actin-bun 96.6 0.0033 7.2E-08 70.5 5.7 74 308-383 2253-2329(2399)
79 KOG2243 Ca2+ release channel ( 96.4 0.007 1.5E-07 66.9 6.8 80 292-378 4041-4120(5019)
80 PF14529 Exo_endo_phos_2: Endo 96.3 0.0046 9.9E-08 51.3 4.2 87 172-282 1-99 (119)
81 PF10591 SPARC_Ca_bdg: Secrete 96.0 0.0032 6.9E-08 52.4 1.7 61 306-374 52-112 (113)
82 KOG2643 Ca2+ binding protein, 96.0 0.0071 1.5E-07 60.3 4.0 88 304-393 229-335 (489)
83 smart00054 EFh EF-hand, calciu 95.5 0.015 3.3E-07 34.2 2.9 26 351-376 1-26 (29)
84 KOG1294 Apurinic/apyrimidinic 95.3 0.12 2.7E-06 51.0 9.8 108 170-282 167-308 (335)
85 KOG0034 Ca2+/calmodulin-depend 95.0 0.037 7.9E-07 50.2 5.0 60 307-376 32-93 (187)
86 smart00054 EFh EF-hand, calciu 95.0 0.018 3.9E-07 33.8 2.1 27 310-337 2-28 (29)
87 KOG4251 Calcium binding protei 94.9 0.043 9.4E-07 50.7 4.9 68 307-378 100-168 (362)
88 PLN03191 Type I inositol-1,4,5 94.4 0.11 2.3E-06 54.8 7.1 58 168-225 418-481 (621)
89 KOG4223 Reticulocalbin, calume 94.4 0.055 1.2E-06 52.2 4.6 75 298-378 66-141 (325)
90 PF09279 EF-hand_like: Phospho 94.4 0.065 1.4E-06 41.7 4.3 65 310-379 2-70 (83)
91 PF13833 EF-hand_8: EF-hand do 94.1 0.072 1.6E-06 37.6 3.7 32 305-337 22-53 (54)
92 PF13499 EF-hand_7: EF-hand do 94.0 0.053 1.2E-06 39.9 3.1 27 352-378 2-28 (66)
93 PF08726 EFhand_Ca_insen: Ca2+ 91.9 0.025 5.4E-07 42.4 -1.4 57 306-376 4-67 (69)
94 COG5239 CCR4 mRNA deadenylase, 91.3 0.11 2.4E-06 51.0 1.9 60 171-236 139-198 (378)
95 KOG2643 Ca2+ binding protein, 91.3 0.11 2.3E-06 52.2 1.7 55 314-376 205-259 (489)
96 PTZ00312 inositol-1,4,5-tripho 91.2 1.2 2.7E-05 42.7 8.7 58 168-231 78-146 (356)
97 KOG1029 Endocytic adaptor prot 91.2 0.23 5.1E-06 53.0 4.2 66 305-378 192-257 (1118)
98 smart00027 EH Eps15 homology d 90.6 0.15 3.2E-06 40.9 1.7 28 351-378 11-38 (96)
99 KOG0377 Protein serine/threoni 90.3 0.74 1.6E-05 46.4 6.6 71 304-376 460-573 (631)
100 KOG1955 Ral-GTPase effector RA 89.4 0.57 1.2E-05 47.7 5.0 66 305-378 228-293 (737)
101 COG5411 Phosphatidylinositol 5 88.2 1.9 4.2E-05 43.6 7.8 55 169-225 164-218 (460)
102 KOG0042 Glycerol-3-phosphate d 88.1 0.63 1.4E-05 48.4 4.4 63 310-378 595-657 (680)
103 PF08976 DUF1880: Domain of un 87.8 0.46 1E-05 39.0 2.6 32 346-377 3-34 (118)
104 PF05517 p25-alpha: p25-alpha 87.8 1.8 4E-05 38.0 6.7 64 312-378 6-69 (154)
105 KOG2562 Protein phosphatase 2 86.0 0.94 2E-05 46.0 4.3 63 307-378 277-343 (493)
106 KOG4666 Predicted phosphate ac 85.8 0.68 1.5E-05 44.9 3.0 64 308-378 296-359 (412)
107 KOG2562 Protein phosphatase 2 83.8 2.9 6.3E-05 42.6 6.6 107 263-374 304-420 (493)
108 cd00252 SPARC_EC SPARC_EC; ext 83.6 1.2 2.5E-05 37.2 3.2 50 346-395 44-99 (116)
109 cd00051 EFh EF-hand, calcium b 82.9 1.1 2.5E-05 31.1 2.6 26 352-377 2-27 (63)
110 PRK12309 transaldolase/EF-hand 82.2 1.6 3.5E-05 44.4 4.1 51 345-398 329-379 (391)
111 cd05026 S-100Z S-100Z: S-100Z 80.7 1.3 2.9E-05 35.2 2.4 33 306-339 51-83 (93)
112 KOG1976 Inositol polyphosphate 80.2 3.6 7.9E-05 39.6 5.5 64 168-235 167-240 (391)
113 KOG4578 Uncharacterized conser 80.0 2.1 4.5E-05 41.6 3.8 88 281-376 292-396 (421)
114 cd05022 S-100A13 S-100A13: S-1 80.0 1.4 3.1E-05 34.8 2.4 31 308-339 47-77 (89)
115 cd00052 EH Eps15 homology doma 78.7 2.1 4.5E-05 31.1 2.8 26 353-378 2-27 (67)
116 cd05023 S-100A11 S-100A11: S-1 78.4 3.9 8.4E-05 32.3 4.4 32 307-339 51-82 (89)
117 KOG3555 Ca2+-binding proteogly 76.3 3 6.4E-05 40.9 3.7 61 308-378 250-310 (434)
118 cd00213 S-100 S-100: S-100 dom 76.2 2.8 6.1E-05 32.6 3.1 28 350-377 8-37 (88)
119 cd05031 S-100A10_like S-100A10 76.1 1.9 4.1E-05 34.3 2.0 34 306-340 49-82 (94)
120 cd05030 calgranulins Calgranul 75.8 5.1 0.00011 31.4 4.4 32 307-339 50-81 (88)
121 cd05029 S-100A6 S-100A6: S-100 74.9 2.5 5.3E-05 33.3 2.4 34 305-339 48-81 (88)
122 cd05024 S-100A10 S-100A10: A s 74.7 5.8 0.00013 31.5 4.4 48 291-339 29-78 (91)
123 KOG0751 Mitochondrial aspartat 74.5 4.1 8.8E-05 41.9 4.3 90 300-393 100-196 (694)
124 cd05025 S-100A1 S-100A1: S-100 73.9 4.2 9E-05 32.1 3.5 29 349-377 8-38 (92)
125 PF14788 EF-hand_10: EF hand; 73.3 2.9 6.3E-05 29.2 2.1 32 306-338 19-50 (51)
126 cd05027 S-100B S-100B: S-100B 73.1 4.5 9.7E-05 31.8 3.4 28 351-378 9-38 (88)
127 KOG0035 Ca2+-binding actin-bun 72.8 5.3 0.00012 44.3 5.0 69 304-378 743-816 (890)
128 KOG3866 DNA-binding protein of 72.2 5.8 0.00012 38.3 4.5 63 311-376 247-322 (442)
129 KOG4251 Calcium binding protei 68.2 5.8 0.00013 37.0 3.5 57 316-378 289-345 (362)
130 KOG0041 Predicted Ca2+-binding 66.7 5.9 0.00013 36.0 3.1 44 351-394 100-153 (244)
131 KOG4666 Predicted phosphate ac 66.2 9.9 0.00021 37.1 4.7 63 308-376 259-322 (412)
132 PF01023 S_100: S-100/ICaBP ty 60.6 9.5 0.00021 25.8 2.6 31 307-337 5-36 (44)
133 KOG1029 Endocytic adaptor prot 56.8 18 0.00038 39.4 5.0 54 314-376 22-75 (1118)
134 KOG0751 Mitochondrial aspartat 56.3 32 0.00068 35.7 6.5 56 315-378 81-136 (694)
135 KOG0169 Phosphoinositide-speci 56.2 12 0.00027 40.5 3.9 61 310-376 138-198 (746)
136 KOG2871 Uncharacterized conser 55.0 6.8 0.00015 38.9 1.5 71 304-380 305-376 (449)
137 PF12763 EF-hand_4: Cytoskelet 51.5 10 0.00022 30.9 1.9 34 304-338 39-72 (104)
138 KOG3555 Ca2+-binding proteogly 49.9 15 0.00033 36.2 3.0 94 298-394 201-300 (434)
139 PF07499 RuvA_C: RuvA, C-termi 49.2 36 0.00078 23.2 4.1 40 328-376 3-42 (47)
140 PF14513 DAG_kinase_N: Diacylg 45.7 22 0.00047 30.6 3.0 46 324-376 6-58 (138)
141 KOG0998 Synaptic vesicle prote 45.2 6.5 0.00014 44.2 -0.3 62 308-377 283-344 (847)
142 PF14658 EF-hand_9: EF-hand do 40.8 25 0.00055 26.0 2.3 31 307-337 34-64 (66)
143 COG4103 Uncharacterized protei 37.5 39 0.00084 29.1 3.2 57 313-378 35-94 (148)
144 cd07313 terB_like_2 tellurium 36.4 37 0.00079 27.1 3.0 52 324-378 14-65 (104)
145 KOG0038 Ca2+-binding kinase in 33.2 48 0.001 28.7 3.1 55 316-377 79-135 (189)
146 PLN02230 phosphoinositide phos 33.0 94 0.002 33.6 6.0 70 306-379 27-103 (598)
147 KOG0808 Carbon-nitrogen hydrol 33.0 40 0.00086 32.0 2.8 22 80-101 100-121 (387)
148 KOG4347 GTPase-activating prot 32.4 50 0.0011 35.4 3.8 60 306-372 553-612 (671)
149 KOG1954 Endocytosis/signaling 31.9 51 0.0011 33.2 3.6 54 310-372 446-499 (532)
150 PF03672 UPF0154: Uncharacteri 31.7 86 0.0019 23.1 3.8 31 325-360 31-61 (64)
151 PF10591 SPARC_Ca_bdg: Secrete 30.8 12 0.00026 31.0 -0.8 29 346-374 50-78 (113)
152 PLN02952 phosphoinositide phos 29.2 1.5E+02 0.0033 32.1 6.8 69 306-379 36-111 (599)
153 PF03979 Sigma70_r1_1: Sigma-7 29.0 51 0.0011 25.4 2.5 33 324-363 20-52 (82)
154 PLN02222 phosphoinositide phos 28.6 1E+02 0.0023 33.1 5.5 68 306-379 23-91 (581)
155 PRK00523 hypothetical protein; 28.1 1E+02 0.0023 23.2 3.8 31 325-360 39-69 (72)
156 PF05042 Caleosin: Caleosin re 27.8 48 0.001 29.6 2.4 69 309-378 8-124 (174)
157 PTZ00370 STEVOR; Provisional 27.0 46 0.001 32.1 2.3 85 328-434 56-142 (296)
158 PTZ00235 DNA polymerase epsilo 26.3 1.5E+02 0.0032 28.9 5.6 14 213-226 64-77 (291)
159 PF08461 HTH_12: Ribonuclease 25.5 79 0.0017 23.3 2.9 35 324-363 12-46 (66)
160 KOG0565 Inositol polyphosphate 24.7 2.2E+02 0.0047 24.2 6.0 14 168-181 57-70 (145)
161 PF09069 EF-hand_3: EF-hand; 24.3 3E+02 0.0066 21.7 6.1 65 310-378 5-75 (90)
162 TIGR01639 P_fal_TIGR01639 Plas 23.8 1.4E+02 0.003 21.6 3.8 30 325-359 9-38 (61)
163 PF12419 DUF3670: SNF2 Helicas 23.6 89 0.0019 26.8 3.3 52 324-375 82-138 (141)
164 PLN02228 Phosphoinositide phos 22.6 1.8E+02 0.004 31.2 5.9 68 306-379 22-93 (567)
165 PF00404 Dockerin_1: Dockerin 22.3 1.1E+02 0.0024 17.2 2.4 16 318-334 1-16 (21)
166 PRK01844 hypothetical protein; 21.9 1.6E+02 0.0034 22.3 3.8 30 325-359 38-67 (72)
167 KOG1955 Ral-GTPase effector RA 21.7 89 0.0019 32.5 3.2 33 305-338 262-294 (737)
168 TIGR01478 STEVOR variant surfa 20.5 84 0.0018 30.3 2.6 83 328-432 57-141 (295)
169 PF05042 Caleosin: Caleosin re 20.5 2.2E+02 0.0047 25.5 5.0 70 311-383 99-170 (174)
No 1
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=9.5e-40 Score=322.04 Aligned_cols=356 Identities=32% Similarity=0.382 Sum_probs=259.3
Q ss_pred cEEEEeeccccccccC---CcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc------------ccccCCccE
Q 013124 46 CISCTTFNILAPIYKR---LDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE------------RLGNAGYNT 110 (449)
Q Consensus 46 ~lrv~TyNIl~~~y~~---~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE------------~l~~~gY~~ 110 (449)
.|+||||||||+.+.+ ..++. .+...+.|.+|.+.|+.+|..++|||+|||| .+..+||..
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~~~~----~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~ 191 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRDIRRLYFP----ESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTG 191 (495)
T ss_pred ceEEEEehHhHHHHHHHhHHhhcc----CChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceE
Confidence 7999999999998843 33322 4668899999999999999999999999999 566789999
Q ss_pred EEeccCCCCCCeEEEEEecCCceEeeeeEEEecccc------CceeeEEeeeeecccccccCCCCceEEEEEeeecCCCC
Q 013124 111 FSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHD 184 (449)
Q Consensus 111 ~~~~~~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~------~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~ 184 (449)
+|..+++.+.+||||+|+.++|+++....+.+.+.. ++|+.++.++.. ... ..++.|+|+||||.|+|
T Consensus 192 ~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~---~~~--~~sq~ilVanTHLl~np- 265 (495)
T KOG2338|consen 192 FFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFR---LVD--ESSQGILVANTHLLFNP- 265 (495)
T ss_pred EEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEec---ccC--cccCceEEEeeeeeecC-
Confidence 999999889999999999999999999999887654 456666555542 111 13679999999999986
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCCcccccccccCCCCCcCcCcccccCC
Q 013124 185 SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRN 264 (449)
Q Consensus 185 ~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~ 264 (449)
..+++|+.|.+.|++.++++.+..+ .+.|+++|||||+.|++++|.+|++.++......++. ..+.+.|+.. +
T Consensus 266 -~~~~vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~----~e~s~~~~~~-~ 338 (495)
T KOG2338|consen 266 -SRSDVRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHT----IEDSHRYVFS-E 338 (495)
T ss_pred -cccchhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceeccccccc----cccccccccc-c
Confidence 7789999999999999999988664 5789999999999999999999999888776665552 2455556655 3
Q ss_pred CCCCccccccccccCCCCCCCchhhhhHHHHHHHHHHHhhhhhhhhhhhhccc-cccccCCcccHHHHHHHHHHhccCCC
Q 013124 265 HRGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFF-KADNNGDVITHSAFCEALRQVNLAGL 343 (449)
Q Consensus 265 ~~~~~~~vD~i~l~~ps~~~~p~~ts~~~a~~~~id~ll~~~~~~~~~~F~~~-D~d~~~G~I~~~el~~~l~~lg~~~~ 343 (449)
++...+|.|- .|..+.+.+.+......+..-.++|... |++.. -..++.|+......+++..+
T Consensus 339 ~~~ge~g~d~---------------~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~h~~~~~~~s~~s~ 402 (495)
T KOG2338|consen 339 SRLGEEGEDD---------------EEESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSEHESLKVNVSLYSH 402 (495)
T ss_pred cccCcccccc---------------hhhhhhhccCccccccccCCCccccccccccchh-HHHHHHHhhhhhcccceeec
Confidence 3333344431 1667777777766655555566677655 34333 35667777763344443344
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhhccccccccccCCcccccccccccccCceeeccccCchhhhcCC
Q 013124 344 PYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGK 423 (449)
Q Consensus 344 ~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~~a~l~p~e~~~g~ 423 (449)
++.+... +..+. |.++.|..+|..=.............+. ..+.- .-...++++..+--++.+|.|++|+-
T Consensus 403 g~~~~~~--~~~~~--~~gep~vt~~~~~~~g~~dyif~~~~~~-~~~~~----~~~~~~~ikl~~~l~ip~~~e~~k~~ 473 (495)
T KOG2338|consen 403 GYGLVHT--ENAWL--DRGEPGVTNYALTWKGTLDYIFYSPGDC-KQSNR----EFEEDEAIKLKGLLRIPSPQEMWKAG 473 (495)
T ss_pred cccccch--hhccc--cCCCcceecHHhhhccceeeEEeccCcc-cccch----hhhcccceeEEEEecCCCHHHhhccC
Confidence 4544433 33333 8888899999765333322222221111 11111 12345678899999999999999999
Q ss_pred CCCCCC-CCCCCCeeEEeece
Q 013124 424 WPENYS-LSDHAPLSVVFSPV 443 (449)
Q Consensus 424 w~~~~~-~sd~~~~~~~~~~~ 443 (449)
||.++. -|||..|+++|+++
T Consensus 474 ~p~~~~~~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 474 QPPNGRYGSDHIALVAQFSLV 494 (495)
T ss_pred CCCCCCCcccceEeeEeeEee
Confidence 999944 49999999999986
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=1.4e-35 Score=307.74 Aligned_cols=190 Identities=29% Similarity=0.441 Sum_probs=150.8
Q ss_pred CCCcEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc------------ccccCCccE
Q 013124 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE------------RLGNAGYNT 110 (449)
Q Consensus 43 ~~~~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE------------~l~~~gY~~ 110 (449)
...+|||||||||++.|++.+. ++|| +.+.+.|.+|+++|+++|..++|||||||| .|.+.||.+
T Consensus 251 ~~~~frVmSYNILAd~ya~~dl-y~yc--p~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~G 327 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDM-YSYC--PPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQA 327 (606)
T ss_pred CCCCEEEEEeeeccccccCccc-ccCC--CccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceE
Confidence 3468999999999999999775 4688 457899999999999999999999999999 466789999
Q ss_pred EEeccCCC-------CCCeEEEEEecCCceEeeeeEEEecccc----------------------CceeeEEeeeeeccc
Q 013124 111 FSLARTNN-------RGDGLLTALHRDYFNVLNYRELLFNDFG----------------------DRVAQLVHVESVVPF 161 (449)
Q Consensus 111 ~~~~~~~~-------~~~G~ai~~r~~~f~i~~~~~~~~~~~~----------------------~rv~~~~~~~~~~~~ 161 (449)
+|..+++. ..+|||||||+++|.+++...+.|.... ++++.++.++.+...
T Consensus 328 v~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~ 407 (606)
T PLN03144 328 LYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGN 407 (606)
T ss_pred EEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEeccc
Confidence 99887643 5799999999999999999888654321 225555555443110
Q ss_pred cccc-CCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCCc
Q 013124 162 FQNQ-GGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFV 240 (449)
Q Consensus 162 ~~~~-~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~ 240 (449)
.... ...++.|+|+||||+|.| ...++|+.|+..|++.++++... .+.|+|||||||+.|+|++|++| +.|.+
T Consensus 408 ~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~S~vy~lL-t~G~v 481 (606)
T PLN03144 408 QGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPGSAPHCLL-ATGKV 481 (606)
T ss_pred ccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCCChhhhhh-hcCCc
Confidence 0000 113467999999999977 46799999999999999988653 37899999999999999999999 45655
Q ss_pred c
Q 013124 241 S 241 (449)
Q Consensus 241 ~ 241 (449)
+
T Consensus 482 ~ 482 (606)
T PLN03144 482 D 482 (606)
T ss_pred C
Confidence 4
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.91 E-value=1.2e-24 Score=206.95 Aligned_cols=257 Identities=19% Similarity=0.268 Sum_probs=167.2
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc------------ccccCCccEEEe
Q 013124 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE------------RLGNAGYNTFSL 113 (449)
Q Consensus 46 ~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE------------~l~~~gY~~~~~ 113 (449)
.|+|||||+|++.|+++..+. | +.+.+.|.+|.+.|+++|..++|||+|||| .|..+||.+.|.
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~-~---s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~ 105 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYP-Y---SGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFI 105 (378)
T ss_pred eeEEEehhhhhhhhccccccC-C---chhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEe
Confidence 699999999999999998863 2 357899999999999999999999999999 677889999988
Q ss_pred ccCCC----------CCCeEEEEEec----CCceEeeeeEEEecccc-------------CceeeEEeeeeeccccc-cc
Q 013124 114 ARTNN----------RGDGLLTALHR----DYFNVLNYRELLFNDFG-------------DRVAQLVHVESVVPFFQ-NQ 165 (449)
Q Consensus 114 ~~~~~----------~~~G~ai~~r~----~~f~i~~~~~~~~~~~~-------------~rv~~~~~~~~~~~~~~-~~ 165 (449)
++.++ ..+||+|++++ +++-++-.....|...- +++...........+.. ..
T Consensus 106 ~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n 185 (378)
T COG5239 106 PKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFN 185 (378)
T ss_pred cCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeeecc
Confidence 77651 46899999988 44333322222221111 11111111110000111 12
Q ss_pred CCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhcc-----------CCCCCEEEeecCCCCCCccchhhh
Q 013124 166 GGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENK-----------LNHIPIILCGDWNGSKRGHVYKFL 234 (449)
Q Consensus 166 ~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~-----------~~~~pvIl~GDFN~~p~s~~~~~L 234 (449)
+.+|.+++|+|||++|.| ...++++-|+..++.++++...+.. .+..++.+|||||+.-.+.+|++|
T Consensus 186 ~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~~l 263 (378)
T COG5239 186 KEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVYKFL 263 (378)
T ss_pred CCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceehhhh
Confidence 348899999999999965 6679999999999999888765431 122367999999999999999999
Q ss_pred hcCCCcccccccccCCCCCcCcCcccccCCCCCCccccccccccCCCCCCCchhhhhHHHHHHHHHHHhhhhh--hhhhh
Q 013124 235 RSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKAS--LAEND 312 (449)
Q Consensus 235 ~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~vD~i~l~~ps~~~~p~~ts~~~a~~~~id~ll~~~~--~~~~~ 312 (449)
.+ +++...+..++. ....++......-.+. +...+..+++.+|+|...+.+.|||++.... ..+..
T Consensus 264 ~~-~~~q~H~~~~~~------~~~lysvg~~~~h~~n-----~~~~~~~~~~~fTN~t~~~kG~iDYIfy~~~~~~~~~~ 331 (378)
T COG5239 264 VT-SQIQLHESLNGR------DFSLYSVGYKFVHPEN-----LKSDNSKGELGFTNWTPGFKGVIDYIFYHGGLLTRQTG 331 (378)
T ss_pred hh-HHHHhhhccccc------chhhhcccccccChhh-----cccCCCcCCcccccccccccceeEEEEEecCcceeeec
Confidence 54 333322211111 1111221110000000 1112446789999999999999999994333 34444
Q ss_pred hhcccccc
Q 013124 313 AFAFFKAD 320 (449)
Q Consensus 313 ~F~~~D~d 320 (449)
.-..+|.+
T Consensus 332 ~l~~ve~e 339 (378)
T COG5239 332 LLGVVEGE 339 (378)
T ss_pred cccccccc
Confidence 44444443
No 4
>PRK11756 exonuclease III; Provisional
Probab=99.86 E-value=5.6e-21 Score=184.58 Aligned_cols=192 Identities=17% Similarity=0.225 Sum_probs=123.3
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc-----------ccccCCccEEEecc
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE-----------RLGNAGYNTFSLAR 115 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE-----------~l~~~gY~~~~~~~ 115 (449)
+|||||||.. +..|...|.++|++.+|||||||| .+...||.+++...
T Consensus 1 mri~T~Nv~g---------------------~~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~~ 59 (268)
T PRK11756 1 MKFVSFNING---------------------LRARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHGQ 59 (268)
T ss_pred CEEEEEEcCC---------------------HHHHHHHHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEeCC
Confidence 6899999975 123567899999999999999999 12346887776543
Q ss_pred CCCCCCeEEEEEecCCceEeeeeEEEecc-ccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCC---CchhHH
Q 013124 116 TNNRGDGLLTALHRDYFNVLNYRELLFND-FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS---SLSVVR 191 (449)
Q Consensus 116 ~~~~~~G~ai~~r~~~f~i~~~~~~~~~~-~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~---~~~~~R 191 (449)
....|+||++|. ++..... .+.. ..+....++..... . .++.+.|+|+|+..+... .....|
T Consensus 60 --~~~~GvailSr~---p~~~~~~-~~~~~~~~~~~r~l~~~i~-------~-~~g~~~v~n~y~P~~~~~~~~~~~~~r 125 (268)
T PRK11756 60 --KGHYGVALLSKQ---TPIAVRK-GFPTDDEEAQRRIIMATIP-------T-PNGNLTVINGYFPQGESRDHPTKFPAK 125 (268)
T ss_pred --CCCCEEEEEECC---ChHHeEE-CCCCccccccCCEEEEEEE-------c-CCCCEEEEEEEecCCCCCCcchhHHHH
Confidence 346799999765 4433222 1211 11111222222221 1 233599999999432211 111256
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCcc--------------------------chhhhhcCCCcccccc
Q 013124 192 LHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH--------------------------VYKFLRSQGFVSSYDV 245 (449)
Q Consensus 192 ~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~--------------------------~~~~L~~~g~~~~~~~ 245 (449)
..+...|...+.+... .+.|+|+|||||..|.+. .++.|.+.||+|+|..
T Consensus 126 ~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~R~ 201 (268)
T PRK11756 126 RQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDTFRQ 201 (268)
T ss_pred HHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEeehhh
Confidence 6777878777766533 256999999999988755 4556667799999998
Q ss_pred cccCCCCCcCcCcccccCCCC---CCccccccccccCC
Q 013124 246 AHQYTDGDADAHKWVSHRNHR---GNICGVDFIWLRNP 280 (449)
Q Consensus 246 ~~~~~~~~~~~~~w~s~~~~~---~~~~~vD~i~l~~p 280 (449)
.|+.. ...++|.+.+... +...|||||+++.+
T Consensus 202 ~~p~~---~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~ 236 (268)
T PRK11756 202 LNPDV---NDRFSWFDYRSKGFDDNRGLRIDLILATQP 236 (268)
T ss_pred hCCCC---CCcccCcCCcccccccCCceEEEEEEeCHH
Confidence 88752 3456887655432 34568999999744
No 5
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.84 E-value=6.3e-20 Score=177.79 Aligned_cols=200 Identities=15% Similarity=0.217 Sum_probs=127.2
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEeccc--------cc---cCCccEE--Ee
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQER--------LG---NAGYNTF--SL 113 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE~--------l~---~~gY~~~--~~ 113 (449)
||||||||+.-.+ + .+....|..|..+|.+.+...+||||||||. |. ...|.+. +.
T Consensus 1 lkVmtyNv~~l~~---~--------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~ 69 (283)
T TIGR03395 1 IKILSHNVYMLST---N--------LYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVI 69 (283)
T ss_pred CeEEEEEeeeecc---c--------ccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeec
Confidence 6899999985211 1 1233568899999999999999999999991 11 1134322 22
Q ss_pred ccC--------------CCCCCeEEEEEecCCceEeeeeEEEecccc------CceeeEEeeeeecccccccCCCCceEE
Q 013124 114 ART--------------NNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEIL 173 (449)
Q Consensus 114 ~~~--------------~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~------~rv~~~~~~~~~~~~~~~~~~~g~~v~ 173 (449)
.+. .....|++|+ |++|++......|+... .|....+.+.. +|+.|.
T Consensus 70 g~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~~----------~g~~~~ 136 (283)
T TIGR03395 70 GRSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINK----------NGKKFH 136 (283)
T ss_pred ccccccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCCCccccCCceEEEEEec----------CCeEEE
Confidence 221 1235699999 67899887766664322 12223333322 678999
Q ss_pred EEEeeecCCCCC----CchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcC-CCccccccccc
Q 013124 174 IVNTHLLFPHDS----SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQ-GFVSSYDVAHQ 248 (449)
Q Consensus 174 v~ntHL~~~~~~----~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~-g~~~~~~~~~~ 248 (449)
|+||||.+.... .....|..|+..|.+.+..... ..+.|+|||||||..|++..|+.|... +..+. .
T Consensus 137 v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~---~~~~pvIl~GDfN~~~~s~~~~~ml~~l~~~~p-----~ 208 (283)
T TIGR03395 137 VIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNI---PKDETVLIGGDLNVNKGSNEYHDMFKTLNVSEP-----R 208 (283)
T ss_pred EEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccC---CCCceEEEEeeCCCCCCCHHHHHHHHHhcccCC-----C
Confidence 999999663211 1257899999999988764221 135689999999999999999877543 22111 1
Q ss_pred CCCCCcCcCcccccCCC-------CCCccccccccccCCC
Q 013124 249 YTDGDADAHKWVSHRNH-------RGNICGVDFIWLRNPN 281 (449)
Q Consensus 249 ~~~~~~~~~~w~s~~~~-------~~~~~~vD~i~l~~ps 281 (449)
+.+ ..++|.+..|. .....++|||+++++.
T Consensus 209 ~~g---~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 209 YVG---VPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred cCC---CCCCcCCCcCchhhhhcCCCCcceEEEEEEECCC
Confidence 111 23456543331 2344689999999763
No 6
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.82 E-value=4e-21 Score=189.80 Aligned_cols=249 Identities=20% Similarity=0.318 Sum_probs=161.1
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc----------ccccCCccEEEecc
Q 013124 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE----------RLGNAGYNTFSLAR 115 (449)
Q Consensus 46 ~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE----------~l~~~gY~~~~~~~ 115 (449)
+++|||||++++.|.....+. || ..+...|.+|++.++++|..++|||+|||| .|...||.+.+..+
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~-~~--~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~~p~l~~~gY~g~~~~k 95 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYM-YC--PSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFFSPELEASGYSGIFIEK 95 (361)
T ss_pred eEEeechhhhhhhhcccCCCc-cc--chhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHccchhhhcCCcceeecc
Confidence 799999999999988877753 66 457889999999999999999999999999 55666999999887
Q ss_pred C------CCCCCeEEEEEecCCceEeeeeEEEeccccCc-----eee---EEeeeeecc-cccccCCCCceEE----EEE
Q 013124 116 T------NNRGDGLLTALHRDYFNVLNYRELLFNDFGDR-----VAQ---LVHVESVVP-FFQNQGGGQQEIL----IVN 176 (449)
Q Consensus 116 ~------~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~~r-----v~~---~~~~~~~~~-~~~~~~~~g~~v~----v~n 176 (449)
+ .+..+|||||+|.++|.++....+.++..... ... ......... +..+....+..+. ++|
T Consensus 96 ~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~L~~~~~~~~~~~~~~~n 175 (361)
T KOG0620|consen 96 TRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVSLKAELGNMVSLPHLLLN 175 (361)
T ss_pred cccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhhhhhhcCCceeecccccc
Confidence 5 55689999999999999998877766554310 000 000000000 1112222233333 479
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHH----HHH---h----ccCCCCCEEEeecCCCCCCccchhhhhcCCCcccccc
Q 013124 177 THLLFPHDSSLSVVRLHQVYKILQYLEL----YQT---E----NKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDV 245 (449)
Q Consensus 177 tHL~~~~~~~~~~~R~~Q~~~l~~~l~~----~~~---~----~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~~~~~~ 245 (449)
+|+.|.+ ...++++.|+..++..++. ..+ . .+....|+++|||||+.|.+++|.++ ..|.++.-+.
T Consensus 176 ~h~~~~~--~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~-~~~~~~~~~~ 252 (361)
T KOG0620|consen 176 THILWDL--PYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALL-ASGILSPEDA 252 (361)
T ss_pred ceeccCC--CccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeec-ccCCCCcchh
Confidence 9999855 6679999999998877431 111 0 11345899999999999999999999 4444432111
Q ss_pred cccCCCCCcCcCcccccCCCCCCcccccccccc-CCCCCCCchhhhhHHHHHHHHHHHhhh
Q 013124 246 AHQYTDGDADAHKWVSHRNHRGNICGVDFIWLR-NPNQSRKPLQASWAEAVFSIIKCQLQK 305 (449)
Q Consensus 246 ~~~~~~~~~~~~~w~s~~~~~~~~~~vD~i~l~-~ps~~~~p~~ts~~~a~~~~id~ll~~ 305 (449)
....-...... ....+...+ -+++-+-+ .+....++.||++...|.+++||++..
T Consensus 253 d~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~ftn~t~~F~g~~DYIfys 308 (361)
T KOG0620|consen 253 DNKDLPLMSAL---GSKVNKSYE--EMSHDQRRKLEYTTGEPRFTNYTPGFKGTLDYIFYS 308 (361)
T ss_pred hHhhccccccc---ccccccccc--ccchhhhcccccccCccccccccCCccceeeEEEEc
Confidence 11100000000 000000000 02211111 234566777999999999999999843
No 7
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.81 E-value=4.1e-19 Score=166.22 Aligned_cols=188 Identities=22% Similarity=0.385 Sum_probs=124.8
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc-----------ccccCCccEE-Eec
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE-----------RLGNAGYNTF-SLA 114 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE-----------~l~~~gY~~~-~~~ 114 (449)
+||+||||..- ..|...++++|.+.+|||||||| .+...||+.+ ..+
T Consensus 1 mkI~SwNVNgi---------------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~g 59 (261)
T COG0708 1 MKIASWNVNGL---------------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHG 59 (261)
T ss_pred CeeEEEehhhH---------------------HHHHHHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecC
Confidence 58999999761 23678899999999999999999 4556799544 444
Q ss_pred cCCCCCCeEEEEEecCCceEeeeeEEEecc--ccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCc-hhHH
Q 013124 115 RTNNRGDGLLTALHRDYFNVLNYRELLFND--FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSL-SVVR 191 (449)
Q Consensus 115 ~~~~~~~G~ai~~r~~~f~i~~~~~~~~~~--~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~-~~~R 191 (449)
. +..+|+||++|.....+.. .+.. ..+..+.++.+.. .+ |.|+|.++ |++.. +..|
T Consensus 60 q--KgysGVailsr~~~~~v~~----g~~~~~~~d~e~R~I~a~~----------~~--~~v~~~Y~---PnG~~~~~~k 118 (261)
T COG0708 60 Q--KGYSGVAILSKKPPDDVRR----GFPGEEEDDEEGRVIEAEF----------DG--FRVINLYF---PNGSSIGLEK 118 (261)
T ss_pred c--CCcceEEEEEccCchhhhc----CCCCCccccccCcEEEEEE----------CC--EEEEEEEc---CCCCCCCCcc
Confidence 4 5688999998765532211 1221 1233445554444 23 88999888 44443 4555
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCc-----------------------cchhhhhcCCCccccccccc
Q 013124 192 LHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-----------------------HVYKFLRSQGFVSSYDVAHQ 248 (449)
Q Consensus 192 ~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s-----------------------~~~~~L~~~g~~~~~~~~~~ 248 (449)
+.....+++.+..+..+....+.|+|+|||||..|.. ..++.|...||+|++...++
T Consensus 119 ~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p 198 (261)
T COG0708 119 FDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHP 198 (261)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHhhCC
Confidence 5555555555555444443456899999999987641 12344557789999988877
Q ss_pred CCCCCcCcCcccccCCC---CCCccccccccccCC
Q 013124 249 YTDGDADAHKWVSHRNH---RGNICGVDFIWLRNP 280 (449)
Q Consensus 249 ~~~~~~~~~~w~s~~~~---~~~~~~vD~i~l~~p 280 (449)
. ...++|.+.+.. .....||||+++++.
T Consensus 199 ~----~~~YTwW~YR~~~~~~n~G~RID~~l~S~~ 229 (261)
T COG0708 199 E----PEKYTWWDYRANAARRNRGWRIDYILVSPA 229 (261)
T ss_pred C----CCcccccccccchhhhcCceeEEEEEeCHH
Confidence 5 334899988754 123457999998854
No 8
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.79 E-value=2.7e-18 Score=164.57 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=119.5
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc-----------ccccCCccEEEecc
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE-----------RLGNAGYNTFSLAR 115 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE-----------~l~~~gY~~~~~~~ 115 (449)
+||+||||... ..+.++++++|+..+|||||||| .+...||..++...
T Consensus 1 mri~t~Ni~g~---------------------~~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~ 59 (254)
T TIGR00195 1 MKIISWNVNGL---------------------RARLHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ 59 (254)
T ss_pred CEEEEEEcCcH---------------------HHhHHHHHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC
Confidence 69999999751 11355689999999999999999 22346887766654
Q ss_pred CCCCCCeEEEEEecCCceEeeeeEEEeccccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCC--CCCchhHHHH
Q 013124 116 TNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPH--DSSLSVVRLH 193 (449)
Q Consensus 116 ~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~--~~~~~~~R~~ 193 (449)
....|++|++|+..+.+... +..... +.-+.++.++. ..+.++|||+.... ....-..|..
T Consensus 60 --~g~~Gvailsr~~~~~~~~~--~~~~~~-~~~~r~i~~~~------------~~~~l~~~~~p~~~~~~~~~~~~r~~ 122 (254)
T TIGR00195 60 --KGYSGVAIFSKEEPLSVRRG--FGVEEE-DAEGRIIMAEF------------DSFLVINGYFPNGSRDDSEKLPYKLQ 122 (254)
T ss_pred --CCcceEEEEEcCCcceEEEC--CCCccc-ccCCCEEEEEE------------CCEEEEEEEccCCCCCCCccHHHHHH
Confidence 34679999988655443221 111110 11222322332 24889999994311 1111234566
Q ss_pred HHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCc--------------------cchhhhhcCCCcccccccccCCCCC
Q 013124 194 QVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYTDGD 253 (449)
Q Consensus 194 Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~L~~~g~~~~~~~~~~~~~~~ 253 (449)
+...+.+.+..... .+.|+|+|||||..|.+ ..++.|.+.|++|+|...++.
T Consensus 123 ~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~---- 194 (254)
T TIGR00195 123 WLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPD---- 194 (254)
T ss_pred HHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCC----
Confidence 66666666666543 35699999999999875 256777678999999877664
Q ss_pred cCcCcccccCCC---CCCccccccccccC
Q 013124 254 ADAHKWVSHRNH---RGNICGVDFIWLRN 279 (449)
Q Consensus 254 ~~~~~w~s~~~~---~~~~~~vD~i~l~~ 279 (449)
...++|.+.+.. .+...++||||++.
T Consensus 195 ~~~~T~~~~~~~~~~~~~g~RID~i~~s~ 223 (254)
T TIGR00195 195 EGAYSWWDYRTKARDRNRGWRIDYFLVSE 223 (254)
T ss_pred CCCCcccCCcCCccccCCceEEEEEEECH
Confidence 345788765432 23445899998864
No 9
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.77 E-value=1.6e-18 Score=161.86 Aligned_cols=187 Identities=19% Similarity=0.185 Sum_probs=121.6
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecccc---c---------------cCCc
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQERL---G---------------NAGY 108 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE~l---~---------------~~gY 108 (449)
++|+||||+.. ... .++..+.+++.+.|+...+|||||||.. . ..+.
T Consensus 10 ~~v~TyNih~~------------~~~---~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~ 74 (259)
T COG3568 10 FKVLTYNIHKG------------FGA---FDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLA 74 (259)
T ss_pred eEEEEEEEEEc------------cCc---cCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCC
Confidence 89999999862 111 2455678999999999999999999911 0 1111
Q ss_pred cE-EEec----cCCCCCCeEEEEEecCCceEeeeeEEEeccc---cCceeeEEeeeeecccccccCCCCceEEEEEeeec
Q 013124 109 NT-FSLA----RTNNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL 180 (449)
Q Consensus 109 ~~-~~~~----~~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~---~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~ 180 (449)
.+ ++.. ..+...+|++|++ ++++.......++.. ..|.+..+.+.. ..|++|.|+|+||.
T Consensus 75 ~~~~~~~~~~a~~~~~~~GnaiLS---~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~---------~~g~~l~V~~~HL~ 142 (259)
T COG3568 75 PYWWSGAAFGAVYGEGQHGNAILS---RLPIRDVENLALPDPTGLEPRGALLAEIEL---------PGGKPLRVINAHLG 142 (259)
T ss_pred ccccchhhhhhhcccceeeeEEEe---cCcccchhhccCCCCCCCCCceeEEEEEEc---------CCCCEEEEEEEecc
Confidence 11 1111 1223468999995 668888887777753 457666666554 13789999999995
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCC------cccccccccCCCCCc
Q 013124 181 FPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGF------VSSYDVAHQYTDGDA 254 (449)
Q Consensus 181 ~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~------~~~~~~~~~~~~~~~ 254 (449)
+ ....|+.|+..|++.+. +.. ..|+|+|||||+.|+++.|+.....-+ ...+..+++.+
T Consensus 143 l-----~~~~R~~Q~~~L~~~~~-l~~-----~~p~vl~GDFN~~p~s~~yr~~~~~~~~~~~~~~~~~~~a~~~~---- 207 (259)
T COG3568 143 L-----SEESRLRQAAALLALAG-LPA-----LNPTVLMGDFNNEPGSAEYRLAARSPLNAQAALTGAFAPAVGRT---- 207 (259)
T ss_pred c-----cHHHHHHHHHHHHhhcc-Ccc-----cCceEEEccCCCCCCCccceeccCCchhhccccccccCcccCcc----
Confidence 4 44679999999988221 111 229999999999999999976643211 11111111111
Q ss_pred CcCcccccCCCCCCccccccccccCC
Q 013124 255 DAHKWVSHRNHRGNICGVDFIWLRNP 280 (449)
Q Consensus 255 ~~~~w~s~~~~~~~~~~vD~i~l~~p 280 (449)
..+|-+... ..++||||++..
T Consensus 208 -~~tfps~~p----~lriD~Ifvs~~ 228 (259)
T COG3568 208 -IRTFPSNTP----LLRLDRIFVSKE 228 (259)
T ss_pred -cCCCCCCCc----cccccEEEecCc
Confidence 235554443 348999999874
No 10
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-18 Score=165.30 Aligned_cols=204 Identities=22% Similarity=0.240 Sum_probs=146.7
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc--------cccc---CCccEEEec
Q 013124 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE--------RLGN---AGYNTFSLA 114 (449)
Q Consensus 46 ~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE--------~l~~---~gY~~~~~~ 114 (449)
++||+|+|+++..|...++ ..|...+.+.+.++..||+.||| .|.+ .-|.+...-
T Consensus 8 ~lriltlN~Wgip~~Sk~R--------------~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~F 73 (422)
T KOG3873|consen 8 ELRILTLNIWGIPYVSKDR--------------RHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYF 73 (422)
T ss_pred eeeeeEeeccccccccchh--------------HHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhh
Confidence 6999999999987766555 24888999999999999999999 3332 124443333
Q ss_pred cCCCCCCeEEEEEecCCceEeeeeEEEecccc------------CceeeEEeeeeecccccccCCCCceEEEEEeeecCC
Q 013124 115 RTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFP 182 (449)
Q Consensus 115 ~~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~------------~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~ 182 (449)
+++-.+.|+++| |++||++.....++-.+ ++......+.. +|+.|.++||||+++
T Consensus 74 HSGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~----------~g~~v~~yntHLHAe 140 (422)
T KOG3873|consen 74 HSGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLV----------GGRMVNLYNTHLHAE 140 (422)
T ss_pred hcccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeEEEEEee----------CCEEeeeeehhcccc
Confidence 456678999999 77788877655544333 22222222333 679999999999774
Q ss_pred CCC---CchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCCcccccccccCCC--------
Q 013124 183 HDS---SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTD-------- 251 (449)
Q Consensus 183 ~~~---~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~~~~~~~~~~~~-------- 251 (449)
=+- .+--.|..|+..+.+.++...+ ...-||+|||||..|.+-.+++|++.|++|+|...|....
T Consensus 141 Y~rq~D~YL~HR~~QAwdlaqfi~~t~q----~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~r~s 216 (422)
T KOG3873|consen 141 YDRQNDEYLCHRVAQAWDLAQFIRATRQ----NADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSFRLS 216 (422)
T ss_pred ccccCchhhhHHHHHHHHHHHHHHHHhc----CCcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCcccccc
Confidence 332 2344799999999999988776 3556999999999999999999999999988875553211
Q ss_pred ----------CCcCcCcccccCCCCCC--ccccccccccCC
Q 013124 252 ----------GDADAHKWVSHRNHRGN--ICGVDFIWLRNP 280 (449)
Q Consensus 252 ----------~~~~~~~w~s~~~~~~~--~~~vD~i~l~~p 280 (449)
++...++|.+......+ .+|+||++....
T Consensus 217 ~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~ 257 (422)
T KOG3873|consen 217 EDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPG 257 (422)
T ss_pred hhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCc
Confidence 23334566653333333 689999988765
No 11
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.75 E-value=2.3e-17 Score=156.98 Aligned_cols=191 Identities=18% Similarity=0.267 Sum_probs=119.5
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHH-HHHHHHHhhCCCcEEEecc--------ccccCCccEEEeccCC
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRN-QTILDWLICERSSVICLQE--------RLGNAGYNTFSLARTN 117 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~-~~i~~~I~~~~pDIIcLQE--------~l~~~gY~~~~~~~~~ 117 (449)
+||+||||..- ..|. +.+.++|...+|||||||| .+...||..++.....
T Consensus 1 mki~swNVNgi---------------------r~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~~~~~~gY~~~~~~~~~ 59 (250)
T PRK13911 1 MKLISWNVNGL---------------------RACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIK 59 (250)
T ss_pred CEEEEEEeCCh---------------------hHhhhhhHHHHHHhcCCCEEEEEeecccccccccccCCceEEEEeccc
Confidence 58999999762 1123 3588999999999999999 2345689766543334
Q ss_pred CCCCeEEEEEecCCceEeeeeEEEeccccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCchhHHHHHHHH
Q 013124 118 NRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYK 197 (449)
Q Consensus 118 ~~~~G~ai~~r~~~f~i~~~~~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~ 197 (449)
+...|+||++|.....+...... . ..+..+..+.... ..+.|+|++. |+......|+.+...
T Consensus 60 kgy~GVAi~~k~~~~~v~~~~~~--~-~~d~eGR~I~~~~------------~~~~l~nvY~---Pn~~~~~~r~~~K~~ 121 (250)
T PRK13911 60 KGYSGVVTFTKKEPLSVSYGINI--E-EHDKEGRVITCEF------------ESFYLVNVYT---PNSQQALSRLSYRMS 121 (250)
T ss_pred CccceEEEEEcCCchheEEcCCC--C-cccccCCEEEEEE------------CCEEEEEEEe---cCCCCCCcchHHHHH
Confidence 55789999998764443221111 1 1122344444433 3589999988 333333445555544
Q ss_pred HHHHHHHHHHhccCCCCCEEEeecCCCCCCc--------------------cchhhhhcCCCcccccccccCCCCCcCcC
Q 013124 198 ILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYTDGDADAH 257 (449)
Q Consensus 198 l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 257 (449)
+...+.++.... ..+.|+|+|||||..+.. ..++.+...|++|++...|+.. ...+
T Consensus 122 ~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~---~~~y 197 (250)
T PRK13911 122 WEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNK---EKAY 197 (250)
T ss_pred HHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCC---CCCC
Confidence 444444444432 235699999999987531 1244555668999888777641 2457
Q ss_pred cccccCC---CCCCccccccccccCC
Q 013124 258 KWVSHRN---HRGNICGVDFIWLRNP 280 (449)
Q Consensus 258 ~w~s~~~---~~~~~~~vD~i~l~~p 280 (449)
+|.+.+. ..+...|+|||+++..
T Consensus 198 Tww~~~~~~~~~n~g~RIDyilvs~~ 223 (250)
T PRK13911 198 TWWSYMQQARDKNIGWRIDYFLCSNP 223 (250)
T ss_pred ccCCCcCCccccCCcceEEEEEEChH
Confidence 8887652 2344568999988754
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1e-16 Score=153.45 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=114.0
Q ss_pred EEEEeeccccccccCCcccCccccCCCCCCChHhHHHHH-HHHHhhCCCcEEEecc-----------ccccCCccEEEec
Q 013124 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTI-LDWLICERSSVICLQE-----------RLGNAGYNTFSLA 114 (449)
Q Consensus 47 lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i-~~~I~~~~pDIIcLQE-----------~l~~~gY~~~~~~ 114 (449)
|||+||||... ..|.+++ +++|+..+|||||||| .+...||..++..
T Consensus 1 lri~t~Nv~g~---------------------~~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~ 59 (255)
T TIGR00633 1 MKIISWNVNGL---------------------RARLHKLFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHG 59 (255)
T ss_pred CEEEEEecccH---------------------HHHhhccHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEee
Confidence 69999999752 0134555 8999999999999999 1234588877765
Q ss_pred cCCCCCCeEEEEEecCCceEeeeeEEEeccccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCC--CchhHHH
Q 013124 115 RTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS--SLSVVRL 192 (449)
Q Consensus 115 ~~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~--~~~~~R~ 192 (449)
.......|+||++|.....+... +... ..+..+..+.+. .+.+.|+++|+...... .....|.
T Consensus 60 ~~~~~~~G~ailsr~~~~~~~~~--~~~~-~~~~~~r~l~~~------------~~~~~i~~vy~p~~~~~~~~~~~~r~ 124 (255)
T TIGR00633 60 AKSKGYSGVAILSKVEPLDVRYG--FGGE-EHDEEGRVITAE------------FDGFTVVNVYVPNGGSRGLERLEYKL 124 (255)
T ss_pred cccCCcceEEEEEcCCcceEEEC--CCCC-cccCCCcEEEEE------------ECCEEEEEEEccCCCCCCchhHHHHH
Confidence 54334579999987543222110 1111 111222222222 24689999999432210 1113455
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCc--------------------cchhhhhcCCCcccccccccCCCC
Q 013124 193 HQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYTDG 252 (449)
Q Consensus 193 ~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~L~~~g~~~~~~~~~~~~~~ 252 (449)
.+...+.+.+.+... .+.|+|+|||||+.+.. ..++.+.+.|+++.|...++...
T Consensus 125 ~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~- 199 (255)
T TIGR00633 125 QFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNPDTE- 199 (255)
T ss_pred HHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCCCCC-
Confidence 566666555544322 25699999999998742 24666666889998876665421
Q ss_pred CcCcCcccccCCC---CCCccccccccccC
Q 013124 253 DADAHKWVSHRNH---RGNICGVDFIWLRN 279 (449)
Q Consensus 253 ~~~~~~w~s~~~~---~~~~~~vD~i~l~~ 279 (449)
...||.+.+.. .+...++||||.+.
T Consensus 200 --~~~T~~~~~~~~~~~~~~~rID~i~~s~ 227 (255)
T TIGR00633 200 --GAYTWWDYRSGARDRNRGWRIDYFLVSE 227 (255)
T ss_pred --CcCcCcCCccCccccCCceEEEEEEECH
Confidence 24677765431 12345799998874
No 13
>PRK05421 hypothetical protein; Provisional
Probab=99.70 E-value=2e-16 Score=152.21 Aligned_cols=143 Identities=18% Similarity=0.114 Sum_probs=88.0
Q ss_pred CCcEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc--------c-cccCCccEEEec
Q 013124 44 ECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE--------R-LGNAGYNTFSLA 114 (449)
Q Consensus 44 ~~~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE--------~-l~~~gY~~~~~~ 114 (449)
+++||||||||+... .. +....++.| ..+|||||||| . +...|+.+.|..
T Consensus 41 ~~~lri~t~NI~~~~------------~~--------~~~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~ 99 (263)
T PRK05421 41 EERLRLLVWNIYKQQ------------RA--------GWLSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAP 99 (263)
T ss_pred CCceeEEEEEccccc------------cc--------cHHHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhcc
Confidence 468999999998621 00 133455555 88999999999 1 223344433321
Q ss_pred --cCCCCCCeEEEEEecCCceEeeeeEEEeccc---cCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCchh
Q 013124 115 --RTNNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSV 189 (449)
Q Consensus 115 --~~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~---~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~~~ 189 (449)
.......|++|+ +++++.....+..... ..|......+.. ..++.+.|+||||.... ....
T Consensus 100 ~~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~---------~~g~~l~v~ntHl~~~~--~~~~ 165 (263)
T PRK05421 100 AFVLPQHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPL---------PNGRTLLVVNIHAINFS--LGVD 165 (263)
T ss_pred ccccCCCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEe---------CCCCEEEEEEECccccC--cChH
Confidence 122346799999 5567766544321111 123333333332 14667999999995321 1236
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCc
Q 013124 190 VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG 228 (449)
Q Consensus 190 ~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s 228 (449)
.|..|+..+.+.+... ..|+|+|||||+.+..
T Consensus 166 ~r~~q~~~l~~~~~~~-------~~p~Il~GDFN~~~~~ 197 (263)
T PRK05421 166 VYSKQLEPIGDQIAHH-------SGPVILAGDFNTWSRK 197 (263)
T ss_pred HHHHHHHHHHHHHHhC-------CCCEEEEcccccCccc
Confidence 6888988888776542 3599999999997753
No 14
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.63 E-value=4.6e-15 Score=139.15 Aligned_cols=139 Identities=22% Similarity=0.302 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhCCCcEEEecc------------cccc-CCccEEEeccCCC----CCCeEEEEEecCCceEeeeeEEEec
Q 013124 81 RNQTILDWLICERSSVICLQE------------RLGN-AGYNTFSLARTNN----RGDGLLTALHRDYFNVLNYRELLFN 143 (449)
Q Consensus 81 R~~~i~~~I~~~~pDIIcLQE------------~l~~-~gY~~~~~~~~~~----~~~G~ai~~r~~~f~i~~~~~~~~~ 143 (449)
+.+.|.+.|...+|||||||| .+.. .++.......... ...|++|++|.+.+...........
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~~~ 96 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSLFS 96 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccccc
Confidence 556699999999999999999 1222 2323333222211 3579999998875555444443333
Q ss_pred cccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCC
Q 013124 144 DFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWN 223 (449)
Q Consensus 144 ~~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN 223 (449)
..................... .+++|.|+|+|+.+ ....|..|...+++.+....... ...|+|||||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~~~H~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~GDfN 166 (249)
T PF03372_consen 97 KPGIRIFRRSSKSKGIVPVSI---NGKPITVVNVHLPS-----SNDERQEQWRELLARIQKIYADN--PNEPVIVMGDFN 166 (249)
T ss_dssp SSTTCEEEEEEEEEEEEEEEE---ETEEEEEEEEETTS-----HHHHHHHHHHHHHHHHHHHHHTS--SCCEEEEEEE-S
T ss_pred ccccccccccccccccccccc---cceEEEeeeccccc-----cchhhhhhhhhhhhhhhhccccc--ccceEEEEeecc
Confidence 333222211111110000000 17889999999833 33456666667788777766532 223799999999
Q ss_pred CCCCcc
Q 013124 224 GSKRGH 229 (449)
Q Consensus 224 ~~p~s~ 229 (449)
+.+.+.
T Consensus 167 ~~~~~~ 172 (249)
T PF03372_consen 167 SRPDSR 172 (249)
T ss_dssp S-BSSG
T ss_pred cCCccc
Confidence 998753
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.62 E-value=1.6e-14 Score=138.35 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=102.6
Q ss_pred CcEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc--------------cccc---CC
Q 013124 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE--------------RLGN---AG 107 (449)
Q Consensus 45 ~~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE--------------~l~~---~g 107 (449)
..|+||||||+.. . .....|..|...|++.|+ +||||++|| .|.. .+
T Consensus 16 ~~l~I~SfNIr~f--g------------d~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~ 79 (276)
T smart00476 16 ASLRICAFNIQSF--G------------DSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNT 79 (276)
T ss_pred CcEEEEEEECccc--C------------CccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCC
Confidence 3699999999852 1 134579999999999998 789999999 1221 26
Q ss_pred ccEEEeccCCC--CCCeEEEEEecCCceEeeeeEEEecccc-------CceeeEEeeeeecccccccCCCCceEEEEEee
Q 013124 108 YNTFSLARTNN--RGDGLLTALHRDYFNVLNYRELLFNDFG-------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTH 178 (449)
Q Consensus 108 Y~~~~~~~~~~--~~~G~ai~~r~~~f~i~~~~~~~~~~~~-------~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntH 178 (449)
|.++...+.+. .++..+++||++++.+++...+ ++.. .|....+.+.. +...++.|.++|+|
T Consensus 80 Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F~ReP~~~~F~~-------~~~~~~~F~li~~H 150 (276)
T smart00476 80 YSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVFSREPFVVKFSS-------PSTAVKEFVIVPLH 150 (276)
T ss_pred ceEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccccccceEEEEEe-------CCCCCccEEEEEec
Confidence 77776665432 3678999999999999987654 4321 23333333332 11134689999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCC---ccchhhh
Q 013124 179 LLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR---GHVYKFL 234 (449)
Q Consensus 179 L~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~---s~~~~~L 234 (449)
+ ++. .+..++..|.+.+....++ +...|+|++||||+.+. +..++.|
T Consensus 151 ~----~p~---~~~~e~~aL~~v~~~~~~~--~~~~~villGDFNa~~~y~~~~~~~~i 200 (276)
T smart00476 151 T----TPE---AAVAEIDALYDVYLDVRQK--WGTEDVIFMGDFNAGCSYVTKKQWSSI 200 (276)
T ss_pred C----ChH---HHHHHHHHHHHHHHHHHHh--hccCCEEEEccCCCCCCccChhhhhhh
Confidence 9 332 2444554444433333322 24679999999999874 5555555
No 16
>PTZ00297 pantothenate kinase; Provisional
Probab=99.60 E-value=1.7e-14 Score=164.81 Aligned_cols=156 Identities=22% Similarity=0.347 Sum_probs=98.5
Q ss_pred CCCcEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhC-CCcEEEecc-----cc-------------
Q 013124 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQE-----RL------------- 103 (449)
Q Consensus 43 ~~~~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~-~pDIIcLQE-----~l------------- 103 (449)
...+||||||||+... . . + ..| ...+|...|+.. +|||||||| .+
T Consensus 7 ~~~~l~VlTyNv~~~~--~-~-----~------~~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~ 70 (1452)
T PTZ00297 7 GCAQARVLSYNFNILP--R-G-----C------GGF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKM 70 (1452)
T ss_pred CCCceEEEEEEccccC--C-C-----c------ccc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHH
Confidence 4468999999997521 0 0 1 112 246677777774 789999999 11
Q ss_pred -----ccCCccEEEeccCC---C-------CCCeEEEEEecCCceEeeeeEEEecccc------CceeeEEeeeeecccc
Q 013124 104 -----GNAGYNTFSLARTN---N-------RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFF 162 (449)
Q Consensus 104 -----~~~gY~~~~~~~~~---~-------~~~G~ai~~r~~~f~i~~~~~~~~~~~~------~rv~~~~~~~~~~~~~ 162 (449)
++.||.++...+.. . ...|+||+ |||||++...+.++... .|....+.+...
T Consensus 71 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp---- 143 (1452)
T PTZ00297 71 LVDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVP---- 143 (1452)
T ss_pred HHHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEcc----
Confidence 34488765544332 1 45799999 88999999988887432 232233333220
Q ss_pred cccCCCCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHH----hcc-CCCCCEEEeecCCCC
Q 013124 163 QNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQT----ENK-LNHIPIILCGDWNGS 225 (449)
Q Consensus 163 ~~~~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~----~~~-~~~~pvIl~GDFN~~ 225 (449)
. ....++.+.|+||||.+..+. ..|..|+..+.++++.... +.. ....|+|||||||..
T Consensus 144 ~-~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 144 L-AEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred c-cCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 0 000136899999999764432 4588898888888775211 111 235699999999955
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-12 Score=119.00 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=120.7
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc-------ccc--cCCccEEEeccC
Q 013124 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE-------RLG--NAGYNTFSLART 116 (449)
Q Consensus 46 ~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE-------~l~--~~gY~~~~~~~~ 116 (449)
-++++||||-.- +. -.-..|.++|...|+.++|||||||| .+. +..|..++....
T Consensus 99 ~~S~~~WnidgL-----dl-----------n~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K~~s~y~i~~~~~~ 162 (349)
T KOG2756|consen 99 MFSLITWNIDGL-----DL-----------NNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEE 162 (349)
T ss_pred EEEEEEeecccc-----cc-----------chHHHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHHhhhheeEEEeccc
Confidence 578888888541 11 12345999999999999999999999 232 224554444332
Q ss_pred CCCCCeEEEEEecCCceEeeeeEEEecccc-CceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCchhHHHHHH
Q 013124 117 NNRGDGLLTALHRDYFNVLNYRELLFNDFG-DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQV 195 (449)
Q Consensus 117 ~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~-~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~ 195 (449)
. ..|.+ ...+++|.|.+...+.|.... .|..+++.++. +|.++.+.|+||..+.. ....|..|.
T Consensus 163 ~--~~~~~-~l~~s~~~Vks~~~i~F~NS~M~R~L~I~Ev~v----------~G~Kl~l~tsHLEStr~--h~P~r~~qF 227 (349)
T KOG2756|consen 163 G--YFTAI-MLKKSRVKVKSQEIIPFPNSKMMRNLLIVEVNV----------SGNKLCLMTSHLESTRG--HAPERMNQF 227 (349)
T ss_pred e--eeeee-eeehhhcCccccceeccCcchhhheeEEEEEee----------cCceEEEEeccccCCCC--CChHHHHHH
Confidence 2 23433 445788999999988886554 66677777766 78889999999977543 346688888
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCCcccccccccCCCCCcCcCcccccCC
Q 013124 196 YKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRN 264 (449)
Q Consensus 196 ~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~ 264 (449)
...++.+++..... ++.-||++||+|-.-. .+-++=.-.+.+|.|..+.. ......+|.+..|
T Consensus 228 ~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~-ev~r~~lPD~~vDvWE~lg~---p~~~~FTwDT~~N 290 (349)
T KOG2756|consen 228 KMVLKKMQEAIESL--PNATVIFGGDTNLRDR-EVTRCGLPDNIVDVWEFLGK---PKHCQFTWDTQMN 290 (349)
T ss_pred HHHHHHHHHHHHhC--CCceEEEcCcccchhh-hcccCCCCchHHHHHHHhCC---CCcCceeeecccC
Confidence 88788777776654 6777999999996322 11111112355677766542 1244567877655
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.34 E-value=2.7e-11 Score=114.45 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=105.2
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhC-CCcEEEecc-----cc--------cc------
Q 013124 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQE-----RL--------GN------ 105 (449)
Q Consensus 46 ~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~-~pDIIcLQE-----~l--------~~------ 105 (449)
.++|+|||+....+.+ ...|.. -|.+.|... ++||+++|| .. ..
T Consensus 24 ~~~~~twn~qg~s~~~-------------~~kw~~---~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~ 87 (271)
T PRK15251 24 DYKVATWNLQGSSAST-------------ESKWNV---NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIP 87 (271)
T ss_pred cceEEEeecCCCCCCC-------------hhhhhh---hHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccC
Confidence 5999999998742222 223432 344556654 699999999 11 11
Q ss_pred -------------CCccEEEeccC--CCCCCeEEEEEecCCceEeeeeEEEeccccCceeeEEeeeeecccccccCCCCc
Q 013124 106 -------------AGYNTFSLART--NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQ 170 (449)
Q Consensus 106 -------------~gY~~~~~~~~--~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~g~ 170 (449)
.++.++|..+. +....|+||+ +|++..+...+.++....|-...+ +. .
T Consensus 88 v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~~Rpilgi--~i----------~-- 150 (271)
T PRK15251 88 IDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVASRPIIGI--RI----------G-- 150 (271)
T ss_pred cccEEEEccCccCCCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCcccceEEE--Ee----------c--
Confidence 12333444332 2346799999 555666665555443223322222 22 2
Q ss_pred eEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCCcccccccccCC
Q 013124 171 EILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYT 250 (449)
Q Consensus 171 ~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~~~~~~~~~~~ 250 (449)
.+.+++||+.+.. ...+..|+..+.+.+.. . .+..|+++|||||..|++..+.++.+. +........+
T Consensus 151 ~~~ffstH~~a~~----~~da~aiV~~I~~~f~~---~--~~~~pw~I~GDFNr~P~sl~~~l~~~~-~~~~~~iv~p-- 218 (271)
T PRK15251 151 NDVFFSIHALANG----GTDAGAIVRAVHNFFRP---N--MRHINWMIAGDFNRSPDRLESTLDTEH-LRNRVNIVAP-- 218 (271)
T ss_pred CeEEEEeeecCCC----CccHHHHHHHHHHHHhh---c--cCCCCEEEeccCCCCCcchhhhhcchh-cccccEEeCC--
Confidence 2789999996542 34488888888877751 1 124799999999999999977776321 2211122211
Q ss_pred CCCcCcCcccccCCCCCCccccccccccCCCCCC
Q 013124 251 DGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSR 284 (449)
Q Consensus 251 ~~~~~~~~w~s~~~~~~~~~~vD~i~l~~ps~~~ 284 (449)
+..++ .....+||++..+++...
T Consensus 219 ----~~pT~-------~s~~~IDYiv~~~s~~~~ 241 (271)
T PRK15251 219 ----TEPTQ-------RSGGTLDYAVTGNSNQTF 241 (271)
T ss_pred ----CCCCC-------CCCCeeEEEEecCccccc
Confidence 11111 123469999888765444
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.29 E-value=2e-12 Score=116.00 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=91.0
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh-----hhc
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN-----LSC 381 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~-----~~~ 381 (449)
..++...|...|+|+. |.|+.+||+.+|.+.+. .+++.+.|+.||.++|.+.+|+|+++|| ..||. +.+
T Consensus 56 ~~~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~----~~Fs~~TcrlmI~mfd~~~~G~i~f~EF-~~Lw~~i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRS-GRILAKELQQALSNGTW----SPFSIETCRLMISMFDRDNSGTIGFKEF-KALWKYINQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCcccc-ccccHHHHHHHhhcCCC----CCCCHHHHHHHHHHhcCCCCCccCHHHH-HHHHHHHHHHHHH
Confidence 3456678999999999 99999999999997653 6899999999999999999999999999 56666 678
Q ss_pred cccccccccCCcccccccccccccCceeeccc
Q 013124 382 SAQIENNCNDNMEDSKDCSEKEILGFAVKDAF 413 (449)
Q Consensus 382 ~~~~~~~~~g~~~~~e~~~~~~~~g~~v~~a~ 413 (449)
+.+.|+|.+|.++..|+..|++.+||++++.+
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQF 161 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHH
Confidence 89999999999999999999999999988765
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.25 E-value=9.2e-12 Score=98.78 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=62.1
Q ss_pred hhhhhhhhhhhccccc-cccCCcccHHHHHHHHHH-hccCCCCCCCCH-HHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ-VNLAGLPYGLSF-QETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~-d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~-~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+.....++.+|+.||+ +++ |+|+.+||+.+|++ +| ..+++ +++++||+.+|.|+||.|+|+||+.+|..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3456678899999999 999 99999999999998 88 46787 99999999999999999999999988854
No 21
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=120.38 Aligned_cols=238 Identities=15% Similarity=0.186 Sum_probs=147.5
Q ss_pred CCCcEEEEeeccccccccC-Cccc------CccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc--------------
Q 013124 43 GECCISCTTFNILAPIYKR-LDHQ------NQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE-------------- 101 (449)
Q Consensus 43 ~~~~lrv~TyNIl~~~y~~-~~~~------~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE-------------- 101 (449)
-.+.|||.+|||++ |.. .+.. +..||........+..+.++...|..+++||++|-|
T Consensus 460 v~G~LkiasfNVlN--yf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai 537 (798)
T COG2374 460 VGGSLKIASFNVLN--YFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAI 537 (798)
T ss_pred cCceeeeeeeehhh--hhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHH
Confidence 34789999999998 444 1221 123555555566777788999999999999999999
Q ss_pred ---------ccccC-CccEEEeccCCC---CCCeEEEEEecCCceEeeeeEEEeccccCceeeEEeeeeeccccc-cc-C
Q 013124 102 ---------RLGNA-GYNTFSLARTNN---RGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQ-NQ-G 166 (449)
Q Consensus 102 ---------~l~~~-gY~~~~~~~~~~---~~~G~ai~~r~~~f~i~~~~~~~~~~~~~rv~~~~~~~~~~~~~~-~~-~ 166 (449)
.+.+- .|.++...+... -.-+++++||.++..+.....+.-.+....+.....-....++.+ .+ +
T Consensus 538 ~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~~ 617 (798)
T COG2374 538 AQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQDL 617 (798)
T ss_pred HHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhhc
Confidence 12222 355555544312 245789999988877776655431111111111110000111111 01 1
Q ss_pred CCCceEEEEEeeecCCCCC------------CchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhh
Q 013124 167 GGQQEILIVNTHLLFPHDS------------SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFL 234 (449)
Q Consensus 167 ~~g~~v~v~ntHL~~~~~~------------~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L 234 (449)
..+.+|+|+..||.+.... .....|..|+..|..+++..... ..+.|++|.||||+--.+.+++.|
T Consensus 618 ~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~--~~d~~~viLGD~N~y~~edpI~~l 695 (798)
T COG2374 618 SGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG--KADADIVILGDFNDYAFEDPIQAL 695 (798)
T ss_pred cCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc--ccCCCEEEEeccchhhhccHHHHH
Confidence 2667799999999663211 12247899999999999864432 357799999999999999999999
Q ss_pred hcCCCcccccccccCCCCCcCcCcccccCCCCCCccccccccccCCCCCCCchhhhhH
Q 013124 235 RSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWA 292 (449)
Q Consensus 235 ~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~vD~i~l~~ps~~~~p~~ts~~ 292 (449)
+..|+...-...++. . +-+|+ -+.+....+||++.+..-..+....+.|+
T Consensus 696 ~~aGy~~l~~~~~~~----~---~~YSY-~f~G~~gtLDhaLas~sl~~~v~~a~ewH 745 (798)
T COG2374 696 EGAGYMNLAARFHDA----G---DRYSY-VFNGQSGTLDHALASASLAAQVSGATEWH 745 (798)
T ss_pred hhcCchhhhhhccCC----C---CceEE-EECCccchHhhhhhhhhhhhhccCceeee
Confidence 888866533323222 1 11221 23355567999988766556666666776
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.17 E-value=7.7e-11 Score=102.75 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=68.3
Q ss_pred HHHHHHHHh--hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHH
Q 013124 295 VFSIIKCQL--QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 372 (449)
Q Consensus 295 ~~~~id~ll--~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF 372 (449)
|+..+.-.. ....++++.+|+.||.|++ |+|+..||+.+|+.+| +.++++|+++|++.+|.|+||.|+|+||
T Consensus 77 Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~eF 150 (160)
T COG5126 77 FLTVMSVKLKRGDKEEELREAFKLFDKDHD-GYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYEEF 150 (160)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHHHH
Confidence 334444444 4567889999999999999 9999999999999999 6999999999999999999999999999
Q ss_pred HHHHHh
Q 013124 373 KQRMWN 378 (449)
Q Consensus 373 ~~~l~~ 378 (449)
.+.+..
T Consensus 151 ~~~~~~ 156 (160)
T COG5126 151 KKLIKD 156 (160)
T ss_pred HHHHhc
Confidence 887754
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.11 E-value=1.5e-10 Score=91.92 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=61.3
Q ss_pred hhhhhhhhhhhcccc-ccccCC-cccHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 304 QKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-----lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
......+.++|+.|| +|++ | .|+.+||+.+|+. +| ...++++++.+|+.+|.|++|.|+|+||+.++
T Consensus 4 e~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg-----~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLE-----EIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhc-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345677889999998 7999 9 5999999999998 78 46889999999999999999999999998877
Q ss_pred Hh
Q 013124 377 WN 378 (449)
Q Consensus 377 ~~ 378 (449)
..
T Consensus 78 ~~ 79 (88)
T cd05027 78 AM 79 (88)
T ss_pred HH
Confidence 44
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.09 E-value=2.8e-10 Score=100.18 Aligned_cols=66 Identities=32% Similarity=0.491 Sum_probs=61.8
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..+++++|+.||+|++ |+||.+||+.+|..+| +.++.++++.|++.+|.|+||.|+|+||+..|..
T Consensus 84 ~~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGD-GFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCC-CcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 4489999999999999 9999999999999999 6899999999999999999999999999887743
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.08 E-value=2e-10 Score=86.10 Aligned_cols=61 Identities=26% Similarity=0.504 Sum_probs=52.5
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCH----HHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSF----QETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~----~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
++.+|+.+|.|++ |+|+.+||+.++..++. ..++ +.++.+++.+|.|+||.|+|+||+.+|
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLGR-----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTTS-----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5689999999999 99999999999999883 4434 455666999999999999999998765
No 26
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.98 E-value=6.2e-10 Score=98.03 Aligned_cols=100 Identities=23% Similarity=0.341 Sum_probs=86.1
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhh----
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS---- 380 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~---- 380 (449)
....+++++|..||+|++ |+|+..||..+|+.+| ..++++|+..+++++|.|++|.|++.||+.+|....
T Consensus 5 ~~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGD-GKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred HHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 345678899999999999 9999999999999999 589999999999999999999999999988885422
Q ss_pred -----------ccccccccccCCcccccccccccccCceee
Q 013124 381 -----------CSAQIENNCNDNMEDSKDCSEKEILGFAVK 410 (449)
Q Consensus 381 -----------~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~ 410 (449)
.+.-.|.+.+|.+..+|+......+|...+
T Consensus 79 ~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 79 DEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred cccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 234567888899988888888888887766
No 27
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=1.3e-09 Score=104.15 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=107.9
Q ss_pred CcEEEEeeccccccccCCcccCccccCCCCCCChHhHHHHHHHHHhhCCCcEEEecc---------ccccCCccEEEecc
Q 013124 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQE---------RLGNAGYNTFSLAR 115 (449)
Q Consensus 45 ~~lrv~TyNIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIIcLQE---------~l~~~gY~~~~~~~ 115 (449)
..++++++|++.+ +. -..+++..+++..+|+|-+|| ......|.++....
T Consensus 87 ~~~~~l~~N~r~~-----n~----------------~~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~~yP~~~~~~ 145 (309)
T COG3021 87 RLLWNLQKNVRFD-----NA----------------SVAKLLSLIQQLDADAVTTPEGVQLWTAKVGALAAQYPAFILCQ 145 (309)
T ss_pred hhhhhhhhhcccc-----Cc----------------CHHHHHHHHhhhCcchhhhHHHHHHhHhHHHHHHHhCCceeecC
Confidence 4689999998773 11 156778888888999999999 12234676554333
Q ss_pred CCCCCCeEEEEEecCCceEeeeeEEEeccccCceeeEEeeeeecccccccCCCCceEEEEEeeec-CCCCCCchhHHHHH
Q 013124 116 TNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL-FPHDSSLSVVRLHQ 194 (449)
Q Consensus 116 ~~~~~~G~ai~~r~~~f~i~~~~~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~-~~~~~~~~~~R~~Q 194 (449)
.+...-+.+++.++...+... ...++.. ++.+.+..... .+|+.+.|++.|.. |+- ..+....|
T Consensus 146 ~~~~~~~~a~~sr~~~~~~~~-~e~~~~~--pk~~~~t~~~~---------~~g~~l~v~~lh~~~~~~---~~~~~~~q 210 (309)
T COG3021 146 HPTGVFTLAILSRRPCCPLTE-AEPWLRL--PKSALATAYPL---------PDGTELTVVALHAVNFPV---GTDPQRAQ 210 (309)
T ss_pred CCCCeeeeeeccccccccccc-cCccccC--CccceeEEEEc---------CCCCEEEEEeeccccccC---CccHHHHH
Confidence 222445667776554322211 1112211 22222221111 27899999999996 422 22333367
Q ss_pred HHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhcCCCcccccccccCCCCCcCcCcccccCCCC-CCccccc
Q 013124 195 VYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHR-GNICGVD 273 (449)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~~-~~~~~vD 273 (449)
...+.+.+..+ ..|+|++||||++|.|..++.+..-|-....+.+.. ..-++.+.+.. -....||
T Consensus 211 l~~l~~~i~~~-------~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG~-------~~~~~~p~~~~r~~g~PID 276 (309)
T COG3021 211 LLELGDQIAGH-------SGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAGL-------WEVRFTPDERRRAFGLPID 276 (309)
T ss_pred HHHHHHHHHcC-------CCCeEEeecCCCcchhHHHHHHHHhcccccchhccC-------CccccCHHHHhhccCCCcc
Confidence 77776666654 359999999999999999999866543333332220 00122222211 1223489
Q ss_pred cccccC
Q 013124 274 FIWLRN 279 (449)
Q Consensus 274 ~i~l~~ 279 (449)
|||.++
T Consensus 277 hvf~rg 282 (309)
T COG3021 277 HVFYRG 282 (309)
T ss_pred eeeecC
Confidence 999887
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.96 E-value=1.3e-09 Score=87.60 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=58.8
Q ss_pred hhhhhhhhhhhcccc-ccccCC-cccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+.....+.++|..|| .|++ | +|+.+||+.+|.. ++- ......++.++++|++++|.|+||.|+|+||+.+|..
T Consensus 6 e~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~-~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTD-FLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHH-hcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 445567788999998 7898 8 5999999999976 320 0012457889999999999999999999999988854
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.95 E-value=1.6e-09 Score=86.01 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=59.5
Q ss_pred hhhhhhhhhhhccccc-cc-cCCcccHHHHHHHHHH---hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFKA-DN-NGDVITHSAFCEALRQ---VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~-d~-~~G~I~~~el~~~l~~---lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.+....+...|..+|. |+ + |+|+.+||+.+|+. +| ..++++|+++||+.+|.|++|.|+|+||+.+|..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~-g~Is~~EL~~~l~~~~~lg-----~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDK-NTLSKKELKELIQKELTIG-----SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCC-CEECHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 3455667789999998 67 5 99999999999974 56 5789999999999999999999999999988744
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.91 E-value=3.1e-09 Score=85.38 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=60.5
Q ss_pred hhhhhhhhhhhcccc-ccccCCc-ccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFK-ADNNGDV-ITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D-~d~~~G~-I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+.....++++|+.|| .|++ |+ |+..||+.+|+. +|. ..+..++++++++||+.+|.|++|.|+|+||+.++..
T Consensus 5 e~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~-~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSD-FLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHH-HccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 445677899999997 9999 95 999999999985 652 0012468999999999999999999999999887754
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.89 E-value=2.8e-09 Score=85.98 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=61.1
Q ss_pred hhhhhhhhhhccccc-cc-cCCcccHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 305 KASLAENDAFAFFKA-DN-NGDVITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~-d~-~~G~I~~~el~~~l~~-----lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
.....+..+|..||. |+ + |+|+..||+.+|+. +| ..+++++++.+++.+|.|++|.|+|+||+.+|.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg-----~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLK-----NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhh-----ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345668889999997 86 7 99999999999986 34 367899999999999999999999999998886
Q ss_pred hhhcc
Q 013124 378 NLSCS 382 (449)
Q Consensus 378 ~~~~~ 382 (449)
....+
T Consensus 79 ~~~~~ 83 (94)
T cd05031 79 GLSIA 83 (94)
T ss_pred HHHHH
Confidence 54443
No 32
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.89 E-value=1.7e-09 Score=94.32 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=88.9
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhh---
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS--- 380 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~--- 380 (449)
.++..+++++|..||+|++ |.|++.||..+|+.+| ..+++.++.+|+..+|. ++|.|+|.+|+..|-...
T Consensus 16 ~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred HHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 5667889999999999999 9999999999999999 58999999999999999 999999999999885422
Q ss_pred --------ccccccccccCCcccccccccccccCceeeccc
Q 013124 381 --------CSAQIENNCNDNMEDSKDCSEKEILGFAVKDAF 413 (449)
Q Consensus 381 --------~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~~a~ 413 (449)
+++-.|.+..|.++-.|+......+|.+.+...
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~dee 129 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEE 129 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHH
Confidence 445678999999988888877777887665444
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.83 E-value=6.8e-09 Score=84.04 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=59.5
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.....+..+|..||.|++ |.|+.+||+++|+.+| ++++++++|+..+|.+++|.|+|+||+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 455678899999999999 9999999999999865 68899999999999999999999999887755
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.3e-08 Score=87.09 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=64.3
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
.....++..+|+.+|-|++ |.|+..+|+.+...|| +.++++|+++||.++|.|+||.|+-+||...|.
T Consensus 102 ~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 5578899999999999999 9999999999999999 789999999999999999999999999988764
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.83 E-value=7.7e-09 Score=77.48 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=54.7
Q ss_pred hhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 311 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 311 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+.+|+.+|.|++ |.|+.+||+.+|..+| ++.++++.+++.+|.+++|.|+|+||+..+..
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 468999999999 9999999999999877 48899999999999999999999999887743
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.81 E-value=1.2e-08 Score=73.13 Aligned_cols=49 Identities=35% Similarity=0.579 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 324 DVITHSAFCEALRQVNLAGLPYG-LSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 324 G~I~~~el~~~l~~lg~~~~~~~-~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
|.|+.+||+.+|..+|+ . ++++|++.|+..+|.|++|.|+|+||+..+.
T Consensus 3 G~i~~~~~~~~l~~~g~-----~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLGI-----KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTTS-----SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCC-----CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 99999999999988885 6 9999999999999999999999999988774
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.77 E-value=1.6e-08 Score=80.41 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=58.6
Q ss_pred hhhhhhhhhhhcc-ccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAF-FKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~-~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
......+..+|+. +|.|++++.|+.+||+.+|....-.-.....++.++++||+.+|.|+||.|+|+||+.+|..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3455667889998 78888724999999999998742000012467899999999999999999999999988754
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.74 E-value=1.7e-08 Score=80.27 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=59.4
Q ss_pred hhhhhhhhhhccccc--cccCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 305 KASLAENDAFAFFKA--DNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~--d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+....++.+|..||. |++ |.|+.+||+.+++. +|. ..+...+.++++.|+..+|.+++|.|+|+||+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 445668889999999 899 99999999999986 552 0112346999999999999999999999999887754
No 39
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=2.1e-08 Score=85.81 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=79.6
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh------
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN------ 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~------ 378 (449)
.+...+.++|..||.+++ |+|+++||+-+++.+|+ ....+|+.+|+.+.|.++.|.|+|++|+..|..
T Consensus 30 ~q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralGF-----E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMA-GKIDVEELKVAMRALGF-----EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HHHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcCC-----CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 344677899999999999 99999999999999996 788999999999999999999999999888744
Q ss_pred -----hhccccccccccCCcccccccccccccCceeeccc
Q 013124 379 -----LSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAF 413 (449)
Q Consensus 379 -----~~~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~~a~ 413 (449)
+..+...|.+..|.+.-.++..-.-.+|=+++.+-
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~E 143 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEE 143 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHH
Confidence 23445567777787765444333333443333333
No 40
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.65 E-value=9.7e-08 Score=81.19 Aligned_cols=77 Identities=18% Similarity=0.318 Sum_probs=69.1
Q ss_pred HHHHHHHHh--hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHH
Q 013124 295 VFSIIKCQL--QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 372 (449)
Q Consensus 295 ~~~~id~ll--~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF 372 (449)
|+.++...+ ..++..+..+|+.||.+++ |.|..+.|+++|...| ..++++||++|++.+-.|..|.|||.+|
T Consensus 86 FLTmfGekL~gtdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~g-----Dr~~~eEV~~m~r~~p~d~~G~~dy~~~ 159 (171)
T KOG0031|consen 86 FLTMFGEKLNGTDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMG-----DRFTDEEVDEMYREAPIDKKGNFDYKAF 159 (171)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhc-----ccCCHHHHHHHHHhCCcccCCceeHHHH
Confidence 445555555 5678899999999999999 9999999999999999 7999999999999999999999999999
Q ss_pred HHHHH
Q 013124 373 KQRMW 377 (449)
Q Consensus 373 ~~~l~ 377 (449)
...|.
T Consensus 160 ~~~it 164 (171)
T KOG0031|consen 160 TYIIT 164 (171)
T ss_pred HHHHH
Confidence 88775
No 41
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=3.6e-08 Score=85.78 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=80.4
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh------
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN------ 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~------ 378 (449)
.....+...|..+|.+++ |.|+..||+.++..+|. .++.++++.++..+|.+++|.|+|+||+..+..
T Consensus 8 ~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSLGQ-----NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred HHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhCC-----CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 344567789999999999 99999999999999883 678889999999999999999999999887753
Q ss_pred -----hhccccccccccCCcccccccccccccCceeec
Q 013124 379 -----LSCSAQIENNCNDNMEDSKDCSEKEILGFAVKD 411 (449)
Q Consensus 379 -----~~~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~~ 411 (449)
...+...|.+..|.++..+.......+|+.++.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~ 119 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTD 119 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCH
Confidence 223445567777877776666656566665443
No 42
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.59 E-value=1.5e-07 Score=68.37 Aligned_cols=61 Identities=33% Similarity=0.599 Sum_probs=55.8
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
+..+|..+|.+++ |.|+.+|+..++..++ ...+.+++..++..+|.+++|.|+++||...+
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4578999999999 9999999999999998 47899999999999999999999999997654
No 43
>PTZ00183 centrin; Provisional
Probab=98.57 E-value=7.4e-08 Score=84.89 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=77.8
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh-------
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN------- 378 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~------- 378 (449)
...++..+|..+|.+++ |.|+..||+.+|..+|. .++.++++.++..+|.+++|.|+|+||+..+..
T Consensus 15 ~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g~-----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLGF-----EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred HHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 34567789999999999 99999999999999884 678899999999999999999999999877643
Q ss_pred ----hhccccccccccCCcccccccccccccCcee
Q 013124 379 ----LSCSAQIENNCNDNMEDSKDCSEKEILGFAV 409 (449)
Q Consensus 379 ----~~~~~~~~~~~~g~~~~~e~~~~~~~~g~~v 409 (449)
...+...|.+..|.++..|........|..+
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l 123 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETI 123 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 1234556777777776666665555555443
No 44
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.51 E-value=1.7e-07 Score=74.50 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=56.7
Q ss_pred hhhhhhhhhhhcccccc--ccCCcccHHHHHHHHH-HhccCCCCCCCC----HHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 304 QKASLAENDAFAFFKAD--NNGDVITHSAFCEALR-QVNLAGLPYGLS----FQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d--~~~G~I~~~el~~~l~-~lg~~~~~~~~~----~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
++....+...|..++.. .+ |.|+.+||+.+|. .+| ..++ +++++.||+.+|.|++|.|+|+||+.+|
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g-----~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELP-----NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhh-----HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 34455677789888755 35 9999999999997 555 3455 8999999999999999999999999887
Q ss_pred Hh
Q 013124 377 WN 378 (449)
Q Consensus 377 ~~ 378 (449)
..
T Consensus 78 ~~ 79 (88)
T cd05030 78 IK 79 (88)
T ss_pred HH
Confidence 54
No 45
>PF14658 EF-hand_9: EF-hand domain
Probab=98.47 E-value=4.9e-07 Score=66.51 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=55.9
Q ss_pred hhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCC-cceehHHHHHHHH
Q 013124 312 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGN-GVVNYEEFKQRMW 377 (449)
Q Consensus 312 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~d-G~id~~EF~~~l~ 377 (449)
.+|..||.++. |.|..++|+..|+.++- ..+++.+++.|.+++|.++. |.|+++.|...|.
T Consensus 2 ~~F~~fD~~~t-G~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKT-GRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCC-ceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 47999999999 99999999999999982 27889999999999999998 9999999998874
No 46
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.46 E-value=4.8e-07 Score=75.72 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=57.3
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
-+...+..+.||++++ |.|...|||.+|.+|| +.++++|++.++.-.- |.+|.|+|+.|++.++.
T Consensus 87 ~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-----hhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 4556677899999999 9999999999999999 7999999999998754 67899999999987754
No 47
>PTZ00183 centrin; Provisional
Probab=98.46 E-value=5.7e-07 Score=79.17 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=60.2
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
...+..+|+.+|.+++ |+|+..||+.++..+| ..+++++++.++..+|.|++|.|+|+||...+..
T Consensus 89 ~~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKT-GKISLKNLKRVAKELG-----ETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3567889999999999 9999999999999988 4799999999999999999999999999887743
No 48
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.45 E-value=8e-07 Score=80.29 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=68.8
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh----hhccc
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN----LSCSA 383 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~----~~~~~ 383 (449)
..-+.+|+.+|+|++ |.|+..||+.+|.++| +.++++-++.|++.+|.-++|.|+|++|++.+.. ...+.
T Consensus 124 ~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~G-----y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr 197 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRS-GTIDSSELRQALTQLG-----YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFR 197 (221)
T ss_pred HHHHHHHHhcccCCC-CcccHHHHHHHHHHcC-----cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999 9999999999999999 5999999999999999888999999999998844 34556
Q ss_pred cccccccCCc
Q 013124 384 QIENNCNDNM 393 (449)
Q Consensus 384 ~~~~~~~g~~ 393 (449)
+.|.+..|.+
T Consensus 198 ~~D~~q~G~i 207 (221)
T KOG0037|consen 198 RRDTAQQGSI 207 (221)
T ss_pred HhccccceeE
Confidence 6677666655
No 49
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.43 E-value=4.3e-07 Score=77.28 Aligned_cols=96 Identities=14% Similarity=0.165 Sum_probs=82.0
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhh---
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS--- 380 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~--- 380 (449)
+.+..+..++|.++|.|+| |.|+.++|+.+|..|| ...++++++.||+++ .|-|+|--|+.++-.+.
T Consensus 28 q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-----k~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-----KIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCC
Confidence 6788899999999999999 9999999999999999 579999999999986 68999999998885522
Q ss_pred --------ccccccccccCCcccccccccccccCcee
Q 013124 381 --------CSAQIENNCNDNMEDSKDCSEKEILGFAV 409 (449)
Q Consensus 381 --------~~~~~~~~~~g~~~~~e~~~~~~~~g~~v 409 (449)
.+.-.|.+..|.+++..+.+.+...|-+.
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~ 134 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF 134 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC
Confidence 34566888889998888888777777543
No 50
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.42 E-value=1.9e-06 Score=84.82 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=53.6
Q ss_pred CCCeEEEEEecCCceE---eeeeEEEecc---ccCceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCchhHHH
Q 013124 119 RGDGLLTALHRDYFNV---LNYRELLFND---FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRL 192 (449)
Q Consensus 119 ~~~G~ai~~r~~~f~i---~~~~~~~~~~---~~~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~~~~R~ 192 (449)
.+-++.||+|.+..+- +....+...- .+.+.+..+.+.. .+..+.++|+||..+. .....|.
T Consensus 91 ~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~----------~~~~~~fv~~HL~a~~--~~~~~R~ 158 (310)
T smart00128 91 VGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKL----------SDTSFCFVNSHLAAGA--SNVEQRN 158 (310)
T ss_pred cceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEE----------cCcEEEEEeecccccc--chhhhhH
Confidence 3567888888764332 2222222110 1133444444444 5789999999996633 2346688
Q ss_pred HHHHHHHHHHHHHHHhc--cCCCCCEEEeecCCCC
Q 013124 193 HQVYKILQYLELYQTEN--KLNHIPIILCGDWNGS 225 (449)
Q Consensus 193 ~Q~~~l~~~l~~~~~~~--~~~~~pvIl~GDFN~~ 225 (449)
.+...+++.+.--.... ....-.+|++||||--
T Consensus 159 ~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyR 193 (310)
T smart00128 159 QDYKTILRALSFPERAELSQFDHDVVFWFGDLNFR 193 (310)
T ss_pred HHHHHHHHhcCCCCCccccccccceEEEecCccee
Confidence 88888865542100000 0124579999999963
No 51
>PTZ00184 calmodulin; Provisional
Probab=98.42 E-value=8.2e-07 Score=77.17 Aligned_cols=65 Identities=32% Similarity=0.545 Sum_probs=59.3
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
...+..+|+.+|.+++ |+|+.+||+.++..+|. .++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 83 ~~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGN-GFISAAELRHVMTNLGE-----KLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHCC-----CCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 3567889999999999 99999999999999883 78999999999999999999999999987763
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.37 E-value=4.1e-07 Score=89.02 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=87.8
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhh----
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS---- 380 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~---- 380 (449)
+....++.+|+.||.+++ |.++..++.+++..+.. .....+-...++..+|.|.||.+||+||.+++-..+
T Consensus 11 er~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~----~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~ 85 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH----PKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELY 85 (463)
T ss_pred HHHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC----CCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHH
Confidence 456678899999999999 99999999999999883 246677788999999999999999999999996633
Q ss_pred -ccccccccccCCcccccccccccccCceeec
Q 013124 381 -CSAQIENNCNDNMEDSKDCSEKEILGFAVKD 411 (449)
Q Consensus 381 -~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~~ 411 (449)
.+...|.+.+|.++-.|.......+|-+++.
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~d 117 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSD 117 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCH
Confidence 5577899999999999998888888877664
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.37 E-value=6.6e-07 Score=80.82 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=54.7
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCC--HH----HHHHHHHhhCCCCCcceehHHHHHHHHhh
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS--FQ----ETDDLWAQADVDGNGVVNYEEFKQRMWNL 379 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~--~~----e~~~l~~~~D~d~dG~id~~EF~~~l~~~ 379 (449)
..+.=+|+.+|.+++ |+|+.+||++++..+-- ...+ ++ .++.++.++|.|+||.|+|+||.+.++..
T Consensus 104 ~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~~----~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGD-GFISREELKQILRMMVG----ENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHc----cCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 467779999999999 99999999999988731 1222 33 35778889999999999999999888764
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.33 E-value=9.1e-07 Score=73.78 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=53.9
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
.....+.-+|..+|.|+| |+|+.+||+.++ ++ ..+..++.++..+|.|+||.|+++||...++
T Consensus 45 ~~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~--l~-------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYD-GKLSHHELAPIR--LD-------PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCC-CcCCHHHHHHHH--cc-------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 344567789999999999 999999999876 33 4577889999999999999999999988773
No 55
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=77.47 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=60.6
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhhcc
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCS 382 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~~~ 382 (449)
++........|+.+|.|.| |+|+..||+.+|.+|| .+.|.--++.||++.|.|.||+|+|.||+ +|+.+...
T Consensus 95 rkqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLg-----apQTHL~lK~mikeVded~dgklSfrefl-LIfrkaaa 166 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLG-----APQTHLGLKNMIKEVDEDFDGKLSFREFL-LIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhC-----CchhhHHHHHHHHHhhcccccchhHHHHH-HHHHHHhc
Confidence 3444556679999999999 9999999999999999 47788889999999999999999999995 44454433
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.17 E-value=5.2e-06 Score=65.54 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=53.2
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHH-hc-cCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQ-VN-LAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg-~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.....+..+|..+-. +. +.++..||+.+|.+ ++ + ....-+++.++++|+.+|.|+||.|||.||+.++..
T Consensus 5 ~ai~~lI~~FhkYaG-~~-~tLsk~Elk~Ll~~Elp~~--l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EK-NYLNRDDLQKLMEKEFSEF--LKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHcC-CC-CcCCHHHHHHHHHHHhHHH--HcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 344556677877763 33 79999999999964 32 1 012346888999999999999999999999988744
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.06 E-value=5.5e-06 Score=51.09 Aligned_cols=27 Identities=37% Similarity=0.700 Sum_probs=24.7
Q ss_pred HHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 351 ETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 351 e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
|++++++.+|.|+||.|+++||+..|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 689999999999999999999988763
No 58
>PLN02964 phosphatidylserine decarboxylase
Probab=97.91 E-value=1.5e-05 Score=84.65 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=54.1
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+.++|+.+|.|++ |.|+.+||..+|..++ ...++++++++++.+|.|++|.|+++||...|..
T Consensus 181 i~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDED-GQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCC-CeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 6788888999998 9999999999998887 4678888999999999999999999999877755
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.90 E-value=2.8e-05 Score=76.42 Aligned_cols=72 Identities=17% Similarity=0.322 Sum_probs=65.1
Q ss_pred HHhhhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 301 CQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 301 ~ll~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..+...+.++...|...|.+.| |.|+.+|+.+.|+.+|+ .+++++++++++.+|.++++.|+++||...+..
T Consensus 75 ~Y~~~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~gi-----~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 75 RYLDNKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLGI-----QLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhCC-----ccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 3345677888999999999999 99999999999999996 899999999999999999999999999877644
No 60
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.84 E-value=7.5e-05 Score=63.11 Aligned_cols=66 Identities=26% Similarity=0.483 Sum_probs=55.6
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHH----HHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQET----DDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~----~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..+.=+|+.+|-|++ ++|-..+|.+.|..|-- ..++++|+ ++++.++|.||||++++.||...+..
T Consensus 108 lK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr----~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTR----DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhhheeEEeecCCC-CcccHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 344558999999999 99999999999998731 36888885 67788999999999999999877754
No 61
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.84 E-value=1e-05 Score=49.84 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.2
Q ss_pred hhhhhhccccccccCCcccHHHHHHHHHHh
Q 013124 309 AENDAFAFFKADNNGDVITHSAFCEALRQV 338 (449)
Q Consensus 309 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 338 (449)
++..+|+.+|+|++ |+|+.+||+.+|+.|
T Consensus 1 E~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 35789999999999 999999999999875
No 62
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.83 E-value=5.2e-05 Score=74.94 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=60.7
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
......+..+|+.+|.|++ |.|+.+||+.+..-++- .....++++++-++-+.+|.|+||.||+.||+..+
T Consensus 543 Yr~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~s-h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNS-GEISLDEFRTAWKLLSS-HMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HhchhhHHHHHHHhccCCC-CceeHHHHHHHHHHHHh-hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 3455667789999999999 99999999999887652 12347899999999999999999999999999877
No 63
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.80 E-value=1.7e-05 Score=66.65 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=80.0
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCC--CCcceehHHHHHHHHh--hh-
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD--GNGVVNYEEFKQRMWN--LS- 380 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d--~dG~id~~EF~~~l~~--~~- 380 (449)
...+.+++|..||..+| |.|+....-.+|+.|| ..+|+.|+.+.+...+.+ +--+|+|++|+-++-. +.
T Consensus 9 ~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGD-GKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred hHHHHHHHHHHHhccCc-ccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 34678899999999999 9999999999999999 589999999999999988 4578999999887733 11
Q ss_pred ----------ccccccccccCCcccccccccccccCceee
Q 013124 381 ----------CSAQIENNCNDNMEDSKDCSEKEILGFAVK 410 (449)
Q Consensus 381 ----------~~~~~~~~~~g~~~~~e~~~~~~~~g~~v~ 410 (449)
.....|++.+|-+...|+..-..++|=+++
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~ 122 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLT 122 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhcc
Confidence 224567888888887777766666665444
No 64
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.77 E-value=8.4e-05 Score=67.35 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=60.4
Q ss_pred CCchhhhhHHHHHHHHHHHhhhhhhhhhhhhccccccccCCcccHHHHHHHHHHhc-cCCC---C-CCC-CHHHHHHHHH
Q 013124 284 RKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVN-LAGL---P-YGL-SFQETDDLWA 357 (449)
Q Consensus 284 ~~p~~ts~~~a~~~~id~ll~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg-~~~~---~-~~~-~~~e~~~l~~ 357 (449)
+...+..|..++..+.. ....+.+.=+|+++|.|++ |+|++.|+-.+++.+- +.+. + ... .++-++.+++
T Consensus 79 g~i~F~Efi~als~~~r---Gt~eekl~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~ 154 (193)
T KOG0044|consen 79 GTIDFLEFICALSLTSR---GTLEEKLKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFS 154 (193)
T ss_pred CCcCHHHHHHHHHHHcC---CcHHHHhhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHH
Confidence 34444444444333222 2333444456999999999 9999999988887652 1221 1 122 3444789999
Q ss_pred hhCCCCCcceehHHHHHHHH
Q 013124 358 QADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 358 ~~D~d~dG~id~~EF~~~l~ 377 (449)
.+|.|+||.|+++||.....
T Consensus 155 k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 155 KMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HcCCCCCCcccHHHHHHHhh
Confidence 99999999999999987663
No 65
>PLN02964 phosphatidylserine decarboxylase
Probab=97.74 E-value=4.3e-05 Score=81.28 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=72.4
Q ss_pred hhhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHH---HHHHHHhhCCCCCcceehHHHHHHH--H
Q 013124 303 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKQRM--W 377 (449)
Q Consensus 303 l~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e---~~~l~~~~D~d~dG~id~~EF~~~l--~ 377 (449)
...+..++.++|..+|+|++ |.| |..+++.+|+ ..+++++ ++++++.+|.|++|.|+|+||+.+| +
T Consensus 138 ~~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 138 VTQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred cHHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 34566888899999999999 997 9999999993 2677777 8999999999999999999998766 3
Q ss_pred h--------hhccccccccccCCcccccccc
Q 013124 378 N--------LSCSAQIENNCNDNMEDSKDCS 400 (449)
Q Consensus 378 ~--------~~~~~~~~~~~~g~~~~~e~~~ 400 (449)
. ...+...|.+.+|.+.-+|...
T Consensus 209 g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 209 GNLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 2 3355667888888887776654
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.72 E-value=9.1e-05 Score=60.50 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=54.1
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
........|...|. ++ |.|+..+.+.+|.+.| ++.+.+.+||...|.|++|.+|++||.-.|+-
T Consensus 8 e~~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 34556678988885 57 9999999999999866 78999999999999999999999999877743
No 67
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.64 E-value=0.00011 Score=66.56 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=61.4
Q ss_pred HHHHHHHHh--hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHH
Q 013124 295 VFSIIKCQL--QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 372 (449)
Q Consensus 295 ~~~~id~ll--~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF 372 (449)
|..+...++ .....-...+|+.||.|++ |.|+..||-.+|..+- .+-.++-++-.++..|.|+||.|+++|+
T Consensus 49 F~~i~~~~fp~gd~~~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Em 122 (193)
T KOG0044|consen 49 FREIYASFFPDGDASKYAELVFRTFDKNKD-GTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEM 122 (193)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhcccCC-CCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHH
Confidence 333444444 4556667789999999999 9999999988887654 3556777888999999999999999999
Q ss_pred HHHHH
Q 013124 373 KQRMW 377 (449)
Q Consensus 373 ~~~l~ 377 (449)
+..+-
T Consensus 123 l~iv~ 127 (193)
T KOG0044|consen 123 LKIVQ 127 (193)
T ss_pred HHHHH
Confidence 88773
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.56 E-value=4.7e-05 Score=47.74 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.6
Q ss_pred hhhhhccccccccCCcccHHHHHHHHH-Hhc
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALR-QVN 339 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~-~lg 339 (449)
++.+|+.+|.|++ |+|+.+||+.+|+ .+|
T Consensus 2 l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 5789999999999 9999999999999 575
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.36 E-value=0.00027 Score=41.94 Aligned_cols=24 Identities=38% Similarity=0.746 Sum_probs=21.6
Q ss_pred HHHHHHhhCCCCCcceehHHHHHH
Q 013124 352 TDDLWAQADVDGNGVVNYEEFKQR 375 (449)
Q Consensus 352 ~~~l~~~~D~d~dG~id~~EF~~~ 375 (449)
++++|+.+|.|+||.|+++||.+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467899999999999999999764
No 70
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.31 E-value=0.0007 Score=47.12 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 326 ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 326 I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
++.+|++.+|+.+++ .++++-+..++++.|.+++|.++-+||...+
T Consensus 2 msf~Evk~lLk~~NI-----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI-----EMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc-----CcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 678999999999997 8999999999999999999999999997654
No 71
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0013 Score=71.02 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=54.8
Q ss_pred eEEEEEecCCceEeeeeEEEecccc------CceeeEEeeeeecccccccCCCCceEEEEEeeecCCCCCCchhHHHHHH
Q 013124 122 GLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQV 195 (449)
Q Consensus 122 G~ai~~r~~~f~i~~~~~~~~~~~~------~rv~~~~~~~~~~~~~~~~~~~g~~v~v~ntHL~~~~~~~~~~~R~~Q~ 195 (449)
-+.+|.|.+..+.+..-...-..++ ++.+..++... ....+++++.||.++- ...+.|-.--
T Consensus 629 ~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~----------~~TsfCFv~SHlAAG~--snv~ERn~DY 696 (1080)
T KOG0566|consen 629 CLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVY----------HATSFCFVCSHLAAGQ--SNVEERNEDY 696 (1080)
T ss_pred eEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEe----------ccccEEEEeccccccc--chHhhhhhhH
Confidence 3456777777666655444332222 33333333333 4678999999996533 2234454444
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEeecCCCC---CCccchhhhhcC
Q 013124 196 YKILQYLELYQTENKLNHIPIILCGDWNGS---KRGHVYKFLRSQ 237 (449)
Q Consensus 196 ~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~---p~s~~~~~L~~~ 237 (449)
..|.+-+.--....=..+-.|++|||||-- +...+.+.++.+
T Consensus 697 ~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~ 741 (1080)
T KOG0566|consen 697 KTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQ 741 (1080)
T ss_pred HHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhc
Confidence 444443321111000134469999999955 444555555433
No 72
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.17 E-value=0.00089 Score=67.64 Aligned_cols=52 Identities=19% Similarity=0.439 Sum_probs=45.3
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
...+..+|+.+|.|++ |+|+.+||. + ++.+|..+|.|+||.|+++||...+-
T Consensus 333 ~~~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4567889999999999 999999993 1 46789999999999999999987763
No 73
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.14 E-value=0.00075 Score=68.39 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=60.7
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+....++.+.|...| |++ |+|+..|+..++.+.+.. ...+..+|+++++...+.|.+|.|+|+||+..+.+
T Consensus 15 q~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~--~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLP--LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhccc--ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 445567788999999 999 999999999999998741 12356999999999999999999999999998766
No 74
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.00057 Score=65.57 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=50.4
Q ss_pred hhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhh
Q 013124 311 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNL 379 (449)
Q Consensus 311 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~ 379 (449)
..-|+..|.|++ |.+|.+||-..|-=-- -..+.+--|.+-|..+|+|+||.|+++||+.-|...
T Consensus 166 e~rFk~AD~d~d-g~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 166 EERFKAADQDGD-GSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHHHhhcccCCC-CcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 357999999999 9999999988772111 013445557888899999999999999999988663
No 75
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.0015 Score=53.01 Aligned_cols=64 Identities=27% Similarity=0.454 Sum_probs=47.8
Q ss_pred hhhhccccccccCCcccHHHHHHHHHHhcc---CCC-CCC-CCHHHHHHHHH----hhCCCCCcceehHHHHHH
Q 013124 311 NDAFAFFKADNNGDVITHSAFCEALRQVNL---AGL-PYG-LSFQETDDLWA----QADVDGNGVVNYEEFKQR 375 (449)
Q Consensus 311 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~---~~~-~~~-~~~~e~~~l~~----~~D~d~dG~id~~EF~~~ 375 (449)
-..|++.|-|++ |.|+--||.+++.-.-- .|+ +.+ .++.|++.|+. .-|.|+||.|||.||++.
T Consensus 70 fHYF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 357889999999 99999999999875421 122 334 45667666555 568999999999999764
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.94 E-value=0.00049 Score=40.78 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred hhhhhccccccccCCcccHHHHHHHH
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEAL 335 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l 335 (449)
+.++|+.+|.|++ |.|+.+||++++
T Consensus 1 l~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 3578999999999 999999999864
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.73 E-value=0.0021 Score=40.07 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=23.0
Q ss_pred HHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 351 ETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 351 e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
+++.+++.+|.|+||.|+++||...|-
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578899999999999999999977663
No 78
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.55 E-value=0.0033 Score=70.52 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=59.8
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhhccc
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLP---YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSA 383 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~---~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~~~~ 383 (449)
.+..-+|+.||++.+ |.++.++|+.+|+.+|. ..| ++-++.+++++|...|.+.+|.|+..||+++|..+....
T Consensus 2253 ~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY-~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGY-DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCC-CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc
Confidence 445558999999999 99999999999999994 110 112344899999999999999999999999998755443
No 79
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.39 E-value=0.007 Score=66.95 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHH
Q 013124 292 AEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEE 371 (449)
Q Consensus 292 ~~a~~~~id~ll~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~E 371 (449)
.+.++..+++++.-+...-.+.|+.+|+|+. |.|+..||+++|..-. ..++.|++-++.-+..|.+..+||++
T Consensus 4041 vemilkffdmflklkdltssdtfkeydpdgk-giiskkdf~kame~~k------~ytqse~dfllscae~dend~~~y~d 4113 (5019)
T KOG2243|consen 4041 VEMILKFFDMFLKLKDLTSSDTFKEYDPDGK-GIISKKDFHKAMEGHK------HYTQSEIDFLLSCAEADENDMFDYED 4113 (5019)
T ss_pred HHHHHHHHHHHHHHhhccccccchhcCCCCC-ccccHHHHHHHHhccc------cchhHHHHHHHHhhccCccccccHHH
Confidence 3455556666666677777889999999999 9999999999997643 58899999999999999999999999
Q ss_pred HHHHHHh
Q 013124 372 FKQRMWN 378 (449)
Q Consensus 372 F~~~l~~ 378 (449)
|+..+..
T Consensus 4114 fv~rfhe 4120 (5019)
T KOG2243|consen 4114 FVDRFHE 4120 (5019)
T ss_pred HHHHhcC
Confidence 9988855
No 80
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=96.34 E-value=0.0046 Score=51.31 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=36.4
Q ss_pred EEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCC------------ccchhhhhcCCC
Q 013124 172 ILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR------------GHVYKFLRSQGF 239 (449)
Q Consensus 172 v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~------------s~~~~~L~~~g~ 239 (449)
|.|+|++. +|.. ....+.+.+.++.... ...++|++||||..-. ....+++.+.++
T Consensus 1 i~i~~vY~--pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISVYA--PPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEEE----TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEEEC--CCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 46778766 3322 2333444455554433 1228999999998521 112233333344
Q ss_pred cccccccccCCCCCcCcCcccccCCCCCCccccccccccCCCC
Q 013124 240 VSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQ 282 (449)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~vD~i~l~~ps~ 282 (449)
... +. .....+|..... ..++|+++.+.+..
T Consensus 69 ~~~----~~----~~~~~T~~~~~~----~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 69 VDL----NP----PGRPPTFISNSH----GSRIDLILTSDNLL 99 (119)
T ss_dssp EE-----------TT---SEEECCC----EE--EEEEEECCGC
T ss_pred eee----ec----CCCCCcccCCCC----CceEEEEEECChHH
Confidence 332 11 011234544332 56799999887643
No 81
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.04 E-value=0.0032 Score=52.37 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=42.0
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHH
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQ 374 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~ 374 (449)
....+.=-|..+|.|+| |.|+..||+.+...|. ..+.-++.+++..|.|+||.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d-~~L~~~El~~l~~~l~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKD-GVLDRSELKPLRRPLM-------PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-S-SEE-TTTTGGGGSTTS-------TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCC-CccCHHHHHHHHHHHh-------hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33444555999999999 9999999987654332 3344578899999999999999999953
No 82
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0071 Score=60.35 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=56.0
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHH------hccCCCCCCCCHH-----HHHH--HHHhhCCCCCcceehH
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQ------VNLAGLPYGLSFQ-----ETDD--LWAQADVDGNGVVNYE 370 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~------lg~~~~~~~~~~~-----e~~~--l~~~~D~d~dG~id~~ 370 (449)
..+....+-+|++||.|++ |.|+.+||..+.+- +|. .+-..++.. ++.. +.--|..+++++++++
T Consensus 229 S~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~-~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~d 306 (489)
T KOG2643|consen 229 SIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGV-RHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSID 306 (489)
T ss_pred ccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhccccce-ecccCccccceehhhhhhhHHHHhhccCCCccccHH
Confidence 4566667789999999999 99999999876632 222 111112211 2322 3445788999999999
Q ss_pred HHHHHHHh------hhccccccccccCCc
Q 013124 371 EFKQRMWN------LSCSAQIENNCNDNM 393 (449)
Q Consensus 371 EF~~~l~~------~~~~~~~~~~~~g~~ 393 (449)
||++.+-+ ..-+.+.+...+|.|
T Consensus 307 eF~~F~e~Lq~Eil~lEF~~~~~~~~g~I 335 (489)
T KOG2643|consen 307 EFLKFQENLQEEILELEFERFDKGDSGAI 335 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 99887744 223345555555555
No 83
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.52 E-value=0.015 Score=34.16 Aligned_cols=26 Identities=35% Similarity=0.694 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 351 ETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 351 e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
|++.+++.+|.+++|.|++.||...+
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 46789999999999999999997765
No 84
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=95.28 E-value=0.12 Score=51.04 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=55.2
Q ss_pred ceEEEEEeeecCCCCCCchhHHHHHH--HHHHHHHHHHHHhcc---CCCCCEEEeecCCCCCCcc---------------
Q 013124 170 QEILIVNTHLLFPHDSSLSVVRLHQV--YKILQYLELYQTENK---LNHIPIILCGDWNGSKRGH--------------- 229 (449)
Q Consensus 170 ~~v~v~ntHL~~~~~~~~~~~R~~Q~--~~l~~~l~~~~~~~~---~~~~pvIl~GDFN~~p~s~--------------- 229 (449)
..+.++|+|+ |+.....+++.-. ..+-..++....+.. ....|++.|||.|..+...
T Consensus 167 e~~~l~~~y~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~ 243 (335)
T KOG1294|consen 167 EIFILINTYV---PNIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLS 243 (335)
T ss_pred cceeeccccC---cccccccchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcC
Confidence 4567888888 3433344444322 333333444333321 2235899999999874311
Q ss_pred ----------ch-hhhhcCC-CcccccccccCCCCCcCcCcccccCC--CCCCccccccccccCCCC
Q 013124 230 ----------VY-KFLRSQG-FVSSYDVAHQYTDGDADAHKWVSHRN--HRGNICGVDFIWLRNPNQ 282 (449)
Q Consensus 230 ----------~~-~~L~~~g-~~~~~~~~~~~~~~~~~~~~w~s~~~--~~~~~~~vD~i~l~~ps~ 282 (449)
.+ ..+...| ++++|...++... .....|..-.+ .++-.++.||+.++.|..
T Consensus 244 ~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~--~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~ 308 (335)
T KOG1294|consen 244 NAGFTPEERDSFFAELLEKGPLIDTYRELHKDQK--KAYTFWKYMPNGRQRGHGERCDYILVSKPGP 308 (335)
T ss_pred CCCCCHHHhhhHHHhhccCCcceeehhhhcCCcc--ccccchhhccccccCCCCCceeEEEecCcCC
Confidence 11 2222334 5565554443322 12334544332 224445789999988843
No 85
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.04 E-value=0.037 Score=50.21 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=28.7
Q ss_pred hhhhhhhhcccccc-ccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcc-eehHHHHHHH
Q 013124 307 SLAENDAFAFFKAD-NNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGV-VNYEEFKQRM 376 (449)
Q Consensus 307 ~~~~~~~F~~~D~d-~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~-id~~EF~~~l 376 (449)
...+...|..+|.+ ++ |+|+.+||..+.. +.. ..-.+.+++.+|.+++|. |+|++|++.+
T Consensus 32 I~~L~~rF~kl~~~~~~-g~lt~eef~~i~~-~~~--------Np~~~rI~~~f~~~~~~~~v~F~~Fv~~l 93 (187)
T KOG0034|consen 32 IERLYERFKKLDRNNGD-GYLTKEEFLSIPE-LAL--------NPLADRIIDRFDTDGNGDPVDFEEFVRLL 93 (187)
T ss_pred HHHHHHHHHHhcccccc-CccCHHHHHHHHH-Hhc--------CcHHHHHHHHHhccCCCCccCHHHHHHHH
Confidence 33444555555555 44 6666666655552 110 111234455555555444 5555555444
No 86
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.01 E-value=0.018 Score=33.84 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.2
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHH
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQ 337 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~ 337 (449)
+..+|+.+|.+++ |.|+..||+.+++.
T Consensus 2 ~~~~f~~~d~~~~-g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGD-GKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCC-CcEeHHHHHHHHHh
Confidence 5678999999999 99999999999875
No 87
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.87 E-value=0.043 Score=50.70 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=48.9
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
...+..+|+..|.|.+ |+|+..|+++-+.. +.- | ..-+.+|-+-.++..|.|+||.|.++||...+..
T Consensus 100 rrklmviFsKvDVNtD-rkisAkEmqrwImektaE--H-fqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTAE--H-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCcc-ccccHHHHHHHHHHHHHH--H-HHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3445678999999999 99999999886543 220 0 0112334455677889999999999999766644
No 88
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=94.41 E-value=0.11 Score=54.85 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=34.3
Q ss_pred CCceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHH--HHHhcc----CCCCCEEEeecCCCC
Q 013124 168 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLEL--YQTENK----LNHIPIILCGDWNGS 225 (449)
Q Consensus 168 ~g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~--~~~~~~----~~~~pvIl~GDFN~~ 225 (449)
.+..|+++|+||.++........|..+...|+..+.- ...... ...-.+|++||||--
T Consensus 418 ~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 418 FQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred cCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccc
Confidence 5789999999997755332233466667777653311 000000 113368999999953
No 89
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.055 Score=52.25 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=60.2
Q ss_pred HHHHHh-hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 298 IIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 298 ~id~ll-~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
..+++. .+....+..+|..+|.+++ |+|+.+||+.-+...- ...-.+++.+-|...|.|.||.|+++|+...+
T Consensus 66 ~fd~l~~ee~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~-----k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~ 139 (325)
T KOG4223|consen 66 EFDQLTPEESQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQ-----KKYVVEEAARRWDEYDKNKDGFITWEEYLPQT 139 (325)
T ss_pred hhhhhCcchhHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccceeeHHHhhhhh
Confidence 344444 5566778889999999999 9999999999776543 24556778888999999999999999998877
Q ss_pred Hh
Q 013124 377 WN 378 (449)
Q Consensus 377 ~~ 378 (449)
+.
T Consensus 140 ~~ 141 (325)
T KOG4223|consen 140 YG 141 (325)
T ss_pred hh
Confidence 64
No 90
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.36 E-value=0.065 Score=41.69 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=51.1
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCC----CCcceehHHHHHHHHhh
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKQRMWNL 379 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d----~dG~id~~EF~~~l~~~ 379 (449)
+..+|..+-. +. +.||.++|++.|+.-. ....++.++++.+|..+..+ ..+.+++++|...|...
T Consensus 2 i~~if~~ys~-~~-~~mt~~~f~~FL~~eQ---~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DK-EYMTAEEFRRFLREEQ---GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TS-SSEEHHHHHHHHHHTS---S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CC-CcCCHHHHHHHHHHHh---ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5678888844 55 8999999999998753 01246899999999998655 47999999999999764
No 91
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.06 E-value=0.072 Score=37.57 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=28.2
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHH
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQ 337 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 337 (449)
-...++..+|..+|.|++ |+|+.+||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 455668899999999999 99999999999864
No 92
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.03 E-value=0.053 Score=39.92 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 352 TDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 352 ~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
++++++.+|.|++|.|+.+||...+..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~ 28 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKH 28 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 678999999999999999999887744
No 93
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.94 E-value=0.025 Score=42.36 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=39.4
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC-------CcceehHHHHHHH
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-------NGVVNYEEFKQRM 376 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~-------dG~id~~EF~~~l 376 (449)
..+++.++|+.+ .++. ++||..||++.|. +++++-++..+..-. .|.+||..|+..|
T Consensus 4 s~eqv~~aFr~l-A~~K-pyVT~~dLr~~l~------------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGK-PYVTEEDLRRSLT------------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSS-SCEEHHHHHHHS-------------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCC-CcccHHHHHHHcC------------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 456788999999 6666 8999999998752 233355666553222 3779999997543
No 94
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=91.34 E-value=0.11 Score=51.00 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=48.1
Q ss_pred eEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccchhhhhc
Q 013124 171 EILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRS 236 (449)
Q Consensus 171 ~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~L~~ 236 (449)
.+.+.+||+.|.| .....|..|.+.+++.+.+...- ..++++|||||..|.+.+|-.++.
T Consensus 139 ~li~~~~~~f~~p--~~~~er~r~t~~~lnri~e~~~~----~w~~l~~~l~n~e~gd~~~va~Th 198 (378)
T COG5239 139 GLILAVTHLFWHP--YGYYERFRQTYILLNRIGEKDNI----AWVCLFVGLFNKEPGDTPYVANTH 198 (378)
T ss_pred hhhhhhhHhhccc--ceeehhhhHHHHHHHHHhhhhhc----chhheeeeeccCCCCCceeEEecc
Confidence 4678899999977 55678999999999988775431 356799999999999988876643
No 95
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=91.30 E-value=0.11 Score=52.23 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=45.1
Q ss_pred hccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 314 FAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 314 F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
+-++|.+++ |.|+.+|---++.-|. .++...+-.++++|.||||.||-+||...+
T Consensus 205 siF~~lg~~-GLIsfSdYiFLlTlLS-------~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 205 SIFYKLGES-GLISFSDYIFLLTLLS-------IPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred eeEEEcCCC-CeeeHHHHHHHHHHHc-------cCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 345577888 9999999988887765 456667788999999999999999996544
No 96
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=91.25 E-value=1.2 Score=42.68 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=34.5
Q ss_pred CCceEEEEEeeecCCCCCCchh-----------HHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccch
Q 013124 168 GQQEILIVNTHLLFPHDSSLSV-----------VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVY 231 (449)
Q Consensus 168 ~g~~v~v~ntHL~~~~~~~~~~-----------~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~ 231 (449)
++..|.++|+||+. +....+ .|..-...++. ++.... .+..|+++.||||.--+...|
T Consensus 78 ~~t~fdfVNiHLFH--DaSNl~A~~tSPSiYS~~RqrAL~~iL~---r~~~~~-~~~~~lF~fGDfNyRld~~~~ 146 (356)
T PTZ00312 78 GTVVVNVLNVHLYN--DDDNRVAAASSPSLYTGQRQEALLEAIA---ECSAFI-SPSDPLFIFGDFNVRLDGHNL 146 (356)
T ss_pred CCEEEEEEEeeccC--CcchhhHHhcCCchhHHHHHHHHHHHHH---HHhhcc-CCCCcEEEeccceeeeccccH
Confidence 67889999999965 322222 23333333333 332221 246789999999987664443
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=0.23 Score=52.99 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=57.4
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
......+.+|..+|+..+ |+++-..=+.+|.+.+ ++...+..||...|.|+||+++-+||+-.|+-
T Consensus 192 ~~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 345566789999999999 9999999999987755 78889999999999999999999999876644
No 98
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=90.63 E-value=0.15 Score=40.89 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 351 ETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 351 e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
++..++..+|.|++|.|+++|+...|-.
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 4567788899999999999999877744
No 99
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=90.31 E-value=0.74 Score=46.36 Aligned_cols=71 Identities=17% Similarity=0.377 Sum_probs=51.4
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHh-ccCCCCC-CC---------------------------CH-----
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLPY-GL---------------------------SF----- 349 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~~~~~-~~---------------------------~~----- 349 (449)
......+.+.|+..|.+++ |+|+...-..++.++ |+ +.|- .+ .+
T Consensus 460 ~s~~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L-~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 460 RSHRSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGL-NLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred HhhhhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcC-CCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhH
Confidence 3455677889999999999 999999998888763 33 1110 00 01
Q ss_pred ---------HHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 350 ---------QETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 350 ---------~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
..++.|++.+|.|++|.|+.+||...+
T Consensus 538 lvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~ 573 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAW 573 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHH
Confidence 124668888999999999999995543
No 100
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.40 E-value=0.57 Score=47.73 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=56.4
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
++.+-...-|+.+-+|-+ |+|+-.--|..+.+- .+.-+|+..||...|.|.||.+++.||...|.-
T Consensus 228 EQReYYvnQFrtvQpDp~-gfisGsaAknFFtKS-------klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPH-GFISGSAAKNFFTKS-------KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcc-cccccHHHHhhhhhc-------cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 444555678999999999 999999888888773 578899999999999999999999999888743
No 101
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=88.16 E-value=1.9 Score=43.61 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=31.7
Q ss_pred CceEEEEEeeecCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCC
Q 013124 169 QQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGS 225 (449)
Q Consensus 169 g~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 225 (449)
...++++|.||...- ...+.|..-...+...+.--....-...-.++++||||..
T Consensus 164 ~t~~cFv~shlaag~--~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 164 RTSFCFVNSHLAAGV--NNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred cCCcEEEecchhccc--ccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 356899999996533 3345566666666554432111000112348999999954
No 102
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.06 E-value=0.63 Score=48.43 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=56.1
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.+.-|.++|.|+. |+++..++.++|+..+ ...+++.++++++++|.+-+|.+...||.+.+..
T Consensus 595 ~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~-----~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKK-AYQAIADVLKVLKSEN-----VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHH-HHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3467899999999 9999999999999877 3789999999999999999999999999887733
No 103
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.76 E-value=0.46 Score=39.04 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 346 GLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 346 ~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
.|++++++.+|.++-.|..|.+.|.||+..+-
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 58999999999999999999999999988773
No 104
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=87.75 E-value=1.8 Score=37.98 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=47.6
Q ss_pred hhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 312 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 312 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..|..|-..+. ..++-.-|.++++..+|.+ ..++..+++-++..+-..+...|+|++|+..|-.
T Consensus 6 ~~f~~fG~~~~-~~m~~~~F~Kl~kD~~i~d--~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 6 KAFASFGKKNG-TEMDSKNFAKLCKDCGIID--KKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHCSSTSTS-SEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHhcCCcc-ccccHHHHHHHHHHcCCCC--CCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 34555554444 6899999999999998742 3499999999999988777788999999887743
No 105
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=86.05 E-value=0.94 Score=46.03 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=47.6
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHh----hCCCCCcceehHHHHHHHHh
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ----ADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~----~D~d~dG~id~~EF~~~l~~ 378 (449)
.-.+..-|..+|.|.+ |.|+.++|+.-=. +.++.--++.|+.+ .-.-.+|+|||++|+-.+..
T Consensus 277 f~viy~kFweLD~Dhd-~lidk~~L~ry~d--------~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 277 FYVIYCKFWELDTDHD-GLIDKEDLKRYGD--------HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred HHHHHHHHhhhccccc-cccCHHHHHHHhc--------cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 3344445788999999 9999999976432 25677778999983 34556899999999887765
No 106
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=85.77 E-value=0.68 Score=44.86 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=50.5
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..+.-+|+.|+.+.| |.+...+|.-+|+... ++.+-.+-.++...+...+|+|.|.+|.+.+..
T Consensus 296 ~iiq~afk~f~v~eD-g~~ge~~ls~ilq~~l------gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAED-GISGEHILSLILQVVL------GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHHHhcccccc-cccchHHHHHHHHHhc------CcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 445568999999999 9999999988887632 244445667889999999999999999776633
No 107
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=83.85 E-value=2.9 Score=42.61 Aligned_cols=107 Identities=10% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCCCCCccccccccccCCC-----CCCCchhhhhHHHHHHHHHHHhhhhhhhhhhhhccccccccCCcccHHHHHHHHHH
Q 013124 263 RNHRGNICGVDFIWLRNPN-----QSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQ 337 (449)
Q Consensus 263 ~~~~~~~~~vD~i~l~~ps-----~~~~p~~ts~~~a~~~~id~ll~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 337 (449)
.+|.....=||.||-.-|. ..+...|..|.-.+ +...-+.....+.=+|+.+|.+++ |.|+..||+...+.
T Consensus 304 ~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fi---lA~e~k~t~~SleYwFrclDld~~-G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 304 GDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFI---LAEEDKDTPASLEYWFRCLDLDGD-GILTLNELRYFYEE 379 (493)
T ss_pred hccchhhHHHHHHHhhccccceeeecCcccHHHHHHHH---HHhccCCCccchhhheeeeeccCC-CcccHHHHHHHHHH
Confidence 3444444457888883332 12334444444333 332224555666778999999999 99999998765542
Q ss_pred ----hccCCCCCCCCHHH-HHHHHHhhCCCCCcceehHHHHH
Q 013124 338 ----VNLAGLPYGLSFQE-TDDLWAQADVDGNGVVNYEEFKQ 374 (449)
Q Consensus 338 ----lg~~~~~~~~~~~e-~~~l~~~~D~d~dG~id~~EF~~ 374 (449)
|- ++..+.++-+. +.+|++++.....++|+.++|+.
T Consensus 380 q~~rm~-~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 380 QLQRME-CMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHH-hcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 21 11235555444 56788888888899999999965
No 108
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=83.58 E-value=1.2 Score=37.19 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh------hhccccccccccCCccc
Q 013124 346 GLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN------LSCSAQIENNCNDNMED 395 (449)
Q Consensus 346 ~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~------~~~~~~~~~~~~g~~~~ 395 (449)
.....++..++..+|.|+||.|+.+|+..++.. ...+...|.+..|.++-
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~ 99 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISL 99 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCH
Confidence 345678999999999999999999999766422 22345566777777644
No 109
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=82.95 E-value=1.1 Score=31.14 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 352 TDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 352 ~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
+..++..+|.+++|.|+++||...+-
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56789999999999999999977763
No 110
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=82.17 E-value=1.6 Score=44.38 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHhhhccccccccccCCcccccc
Q 013124 345 YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDNMEDSKD 398 (449)
Q Consensus 345 ~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~~~~~~~~~~~g~~~~~e~ 398 (449)
+.....+++.+++.+|.|+||.|+.+||+. ....+...|.+.+|.++.+|-
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---~~~~F~~~D~d~DG~Is~eEf 379 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---SDAVFDALDLNHDGKITPEEM 379 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---HHHHHHHhCCCCCCCCcHHHH
Confidence 467788999999999999999999999963 245567778888888866554
No 111
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=80.66 E-value=1.3 Score=35.19 Aligned_cols=33 Identities=3% Similarity=0.191 Sum_probs=28.9
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhc
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 339 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 339 (449)
...++.++++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKD-NEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHH
Confidence 44578889999999999 9999999999998764
No 112
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=80.22 E-value=3.6 Score=39.64 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=42.7
Q ss_pred CCceEEEEEeeecC--------CCC-CCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCCCccch-hhhh
Q 013124 168 GQQEILIVNTHLLF--------PHD-SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVY-KFLR 235 (449)
Q Consensus 168 ~g~~v~v~ntHL~~--------~~~-~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~-~~L~ 235 (449)
.|..+.++|.||+. +.. ...+..|.+|+..+++.+..-.- ....+++.||||..-+|... ..|.
T Consensus 167 ~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~----~~~~~fVfGdfNfrLds~s~ln~l~ 240 (391)
T KOG1976|consen 167 HGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGL----RNDAIFVFGDFNFRLDSTSLLNYLA 240 (391)
T ss_pred cCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhcc----CceEEEEecccccccchHHHHHHHh
Confidence 68899999999943 111 13455777888888776654222 23468999999998886543 4453
No 113
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=80.03 E-value=2.1 Score=41.61 Aligned_cols=88 Identities=10% Similarity=0.205 Sum_probs=62.3
Q ss_pred CCCCCchhhhhHHHHHHHHHHHh-hh------------hhh-hhhhhhccccccccCCcccHHH---HHHHHHHhccCCC
Q 013124 281 NQSRKPLQASWAEAVFSIIKCQL-QK------------ASL-AENDAFAFFKADNNGDVITHSA---FCEALRQVNLAGL 343 (449)
Q Consensus 281 s~~~~p~~ts~~~a~~~~id~ll-~~------------~~~-~~~~~F~~~D~d~~~G~I~~~e---l~~~l~~lg~~~~ 343 (449)
..+.++..+.|...+...+..-| .. .++ .+.=-|..+|.|.+ +-|...| |+.+|..-.
T Consensus 292 ~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~l~k~s---- 366 (421)
T KOG4578|consen 292 NGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRVLLKKS---- 366 (421)
T ss_pred CCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHHHHhhc----
Confidence 55778888888877776665443 11 111 23335899999999 9999988 556665432
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 344 PYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 344 ~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
-...=.+.+++-.|.|+|..|++.|++..|
T Consensus 367 ---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 367 ---KPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred ---cHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 223345789999999999999999997766
No 114
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=79.97 E-value=1.4 Score=34.78 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=27.8
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhc
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVN 339 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 339 (449)
.++.++++.+|.|++ |.|+.+||..++..+-
T Consensus 47 ~~v~~mi~~~D~d~D-G~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQD-SKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCC-CCCcHHHHHHHHHHHH
Confidence 678899999999999 9999999999887763
No 115
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=78.70 E-value=2.1 Score=31.06 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.1
Q ss_pred HHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 353 DDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 353 ~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+++++.+|.|++|.|+.+|+...+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46788999999999999999877743
No 116
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=78.36 E-value=3.9 Score=32.29 Aligned_cols=32 Identities=3% Similarity=0.086 Sum_probs=28.0
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhc
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 339 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 339 (449)
..++..+++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 3567889999999999 9999999999887764
No 117
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=76.26 E-value=3 Score=40.87 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=49.4
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..+-=.|..+|.|.| |.++..||+.+-. .-.+.=|+.+|+..|...||.|+-.|+-..++.
T Consensus 250 ds~gWMFnklD~N~D-l~Ld~sEl~~I~l---------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYD-LLLDQSELRAIEL---------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhccccccc-cccCHHHhhhhhc---------cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 334446889999999 9999999987642 235666899999999999999999999776655
No 118
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=76.18 E-value=2.8 Score=32.62 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCC--CCCcceehHHHHHHHH
Q 013124 350 QETDDLWAQADV--DGNGVVNYEEFKQRMW 377 (449)
Q Consensus 350 ~e~~~l~~~~D~--d~dG~id~~EF~~~l~ 377 (449)
+++..++..+|. |++|.|+.+||..++.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~ 37 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLE 37 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHH
Confidence 457778999999 8999999999987763
No 119
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=76.10 E-value=1.9 Score=34.26 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=29.9
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhcc
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNL 340 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 340 (449)
...++..+|+.+|.+++ |.|+.+||..++..+++
T Consensus 49 s~~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 49 DPMAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHHH
Confidence 44678889999999999 99999999999988874
No 120
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=75.78 E-value=5.1 Score=31.43 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=28.3
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHHhc
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 339 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 339 (449)
...+..+|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 5678889999999999 9999999999887754
No 121
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=74.90 E-value=2.5 Score=33.33 Aligned_cols=34 Identities=3% Similarity=0.073 Sum_probs=29.1
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHhc
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 339 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 339 (449)
....++.++|+.+|.|++ |.|+.+||-..+..+.
T Consensus 48 ~t~~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~ 81 (88)
T cd05029 48 LQDAEIAKLMEDLDRNKD-QEVNFQEYVTFLGALA 81 (88)
T ss_pred CCHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHH
Confidence 355678889999999999 9999999998887764
No 122
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=74.70 E-value=5.8 Score=31.48 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHh--hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhc
Q 013124 291 WAEAVFSIIKCQL--QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 339 (449)
Q Consensus 291 ~~~a~~~~id~ll--~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg 339 (449)
++.-+..-+..++ ......+..+|+.+|.|+| |.|+..||-.++..+.
T Consensus 29 lk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 29 LQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 3333333344444 3345678889999999999 9999999998887764
No 123
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=74.53 E-value=4.1 Score=41.86 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=57.2
Q ss_pred HHHhhhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 300 KCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGL-PYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 300 d~ll~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~-~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
..++..+..-...+|..||+.++ |.++.+++.+++.+..+..+ +-..+.+-++.. +..+..-.++|.||.+.+..
T Consensus 100 e~~lC~pDal~~~aFqlFDr~~~-~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~---Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 100 ESVLCAPDALFEVAFQLFDRLGN-GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH---FGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred HhhccCchHHHHHHHHHhcccCC-CceehHHHHHHHhccccccCCCccCCcchHHHH---hhhHHHHhccHHHHHHHHHH
Confidence 33333444555679999999999 99999999999998876332 333444444443 33344456788888777644
Q ss_pred ------hhccccccccccCCc
Q 013124 379 ------LSCSAQIENNCNDNM 393 (449)
Q Consensus 379 ------~~~~~~~~~~~~g~~ 393 (449)
.+.+.+.|...+|-+
T Consensus 176 ~~~E~~~qafr~~d~~~ng~i 196 (694)
T KOG0751|consen 176 FQLEHAEQAFREKDKAKNGFI 196 (694)
T ss_pred HHHHHHHHHHHHhcccCCCee
Confidence 333344455555544
No 124
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=73.94 E-value=4.2 Score=32.07 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhC-CCCCc-ceehHHHHHHHH
Q 013124 349 FQETDDLWAQAD-VDGNG-VVNYEEFKQRMW 377 (449)
Q Consensus 349 ~~e~~~l~~~~D-~d~dG-~id~~EF~~~l~ 377 (449)
.+++.+.+..+| .|++| .|+.+||..+|.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~ 38 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQ 38 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHH
Confidence 456889999997 99999 599999987773
No 125
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=73.26 E-value=2.9 Score=29.25 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=25.4
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHh
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQV 338 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 338 (449)
...-+..+|+..|.+++ |.+..+||...++.|
T Consensus 19 ~~~yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp -HHHHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 34456679999999999 999999999988764
No 126
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=73.05 E-value=4.5 Score=31.83 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHhhC-CCCCc-ceehHHHHHHHHh
Q 013124 351 ETDDLWAQAD-VDGNG-VVNYEEFKQRMWN 378 (449)
Q Consensus 351 e~~~l~~~~D-~d~dG-~id~~EF~~~l~~ 378 (449)
++.++++.+| .||+| .|+.+||..+|-.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 5778899998 79999 6999999777743
No 127
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=72.84 E-value=5.3 Score=44.30 Aligned_cols=69 Identities=12% Similarity=-0.032 Sum_probs=56.0
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCC-----HHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS-----FQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~-----~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+....+++..|..+|+... |.++.++|+.+|..+|. ..- .+|+..|+...|.++-|++.|.||...|-.
T Consensus 743 Q~v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~-----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDG-GAASPEELLRCLMSLGY-----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCc-----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 3455678889999999998 99999999999999983 333 345667888888888899999999887744
No 128
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=72.24 E-value=5.8 Score=38.34 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=43.7
Q ss_pred hhhhccccccccCCcccHHHHHHHHHHhccCCCCCCC--CHHH-----------HHHHHHhhCCCCCcceehHHHHHHH
Q 013124 311 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGL--SFQE-----------TDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 311 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~--~~~e-----------~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
...|...|.|+| |+++..||..++..- + +..+.. .+++ -+.+|+.+|+|.|-.|+.+||+..-
T Consensus 247 KTFF~LHD~NsD-GfldeqELEaLFtkE-L-EKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSD-GFLDEQELEALFTKE-L-EKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCc-ccccHHHHHHHHHHH-H-HHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 346888899999 999999997766431 1 000111 1111 1447888999999999999998755
No 129
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=68.17 E-value=5.8 Score=37.03 Aligned_cols=57 Identities=19% Similarity=0.461 Sum_probs=48.1
Q ss_pred cccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 316 FFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 316 ~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.+|.|.+ |.+|.+||...+.-++ ..++-.|+..+|...|.+++-+++.+|.+..-|-
T Consensus 289 lIDsNhD-GivTaeELe~y~dP~n-----~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~ 345 (362)
T KOG4251|consen 289 LIDSNHD-GIVTAEELEDYVDPQN-----FRLALNEVNDIMALTDANNDEKLSLEELLERDWL 345 (362)
T ss_pred HhhcCCc-cceeHHHHHhhcCchh-----hhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhh
Confidence 5689999 9999999998875555 2577889999999999999999999999876544
No 130
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=66.69 E-value=5.9 Score=35.96 Aligned_cols=44 Identities=16% Similarity=0.401 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCCcceehHHHHHHHHh----------hhccccccccccCCcc
Q 013124 351 ETDDLWAQADVDGNGVVNYEEFKQRMWN----------LSCSAQIENNCNDNME 394 (449)
Q Consensus 351 e~~~l~~~~D~d~dG~id~~EF~~~l~~----------~~~~~~~~~~~~g~~~ 394 (449)
+.+.+++.+|.+.||.||+.|...+|-. +.+..+-|+|..|.+.
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklS 153 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLS 153 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchh
Confidence 4567999999999999999999666622 3344556777777664
No 131
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=66.19 E-value=9.9 Score=37.13 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=51.3
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHh-ccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
..++..|..||.+++ |.++..|--..|.-+ | ...+.+-++--++.++.+.||.+.-.+|.-++
T Consensus 259 d~l~~~f~LFde~~t-g~~D~re~v~~lavlc~-----p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTT-GNGDYRETVKTLAVLCG-----PPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhhheecCCCC-CcccHHHHhhhheeeeC-----CCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 556789999999999 999988766666543 3 46788889999999999999999999984443
No 132
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=60.59 E-value=9.5 Score=25.78 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=22.4
Q ss_pred hhhhhhhhccc-cccccCCcccHHHHHHHHHH
Q 013124 307 SLAENDAFAFF-KADNNGDVITHSAFCEALRQ 337 (449)
Q Consensus 307 ~~~~~~~F~~~-D~d~~~G~I~~~el~~~l~~ 337 (449)
...+.++|..+ ..+++...++..||+++|..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34556677666 35555479999999999975
No 133
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.85 E-value=18 Score=39.43 Aligned_cols=54 Identities=26% Similarity=0.398 Sum_probs=43.7
Q ss_pred hccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 314 FAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 314 F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
|..+.+ +. |+||-..-+.++-+.| +...-+-+||...|.|.||++|..||.-.|
T Consensus 22 F~~Lkp-~~-gfitg~qArnfflqS~-------LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 22 FGQLKP-GQ-GFITGDQARNFFLQSG-------LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred HhccCC-CC-CccchHhhhhhHHhcC-------CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 444433 44 9999999999887766 677789999999999999999999995444
No 134
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=56.26 E-value=32 Score=35.69 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=42.0
Q ss_pred ccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 315 AFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 315 ~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
...|.-+| |.|+.+||+.. +.+- .-.+.-.+..+.-+|..++|.++|++|...+-.
T Consensus 81 ~iaD~tKD-glisf~eF~af-e~~l------C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 81 SIADQTKD-GLISFQEFRAF-ESVL------CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhhhccc-ccccHHHHHHH-Hhhc------cCchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 34477788 99999999754 3321 234556678899999999999999999776633
No 135
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=56.17 E-value=12 Score=40.54 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=53.6
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
+...|...|++++ |.++..+...++..++. .+.+.-+..++++.|..+++++...+|.+..
T Consensus 138 i~~~~~~ad~~~~-~~~~~~~~~~~~~~~n~-----~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 138 IHSIFQEADKNKN-GHMSFDEVLDLLKQLNV-----QLSESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred HHHHHHHHccccc-cccchhhHHHHHHHHHH-----hhhHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 4567888999999 99999999999999884 7888889999999998999999999997655
No 136
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.98 E-value=6.8 Score=38.86 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHH-HhhCCCCCcceehHHHHHHHHhhh
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLW-AQADVDGNGVVNYEEFKQRMWNLS 380 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~-~~~D~d~dG~id~~EF~~~l~~~~ 380 (449)
...+.+++.+|+..|+.++ |+|+.+-|+.+|+.++. ..++.+.-.++ +.+|..+-|.|-.++|+..+...+
T Consensus 305 ~~~s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N~-----~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~t 376 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDN-NFISCSGLQIVMTALNR-----LVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPTT 376 (449)
T ss_pred CCCCHHHHhhhhccCccCC-CeeecHHHHHHHHHhcc-----cccCHHHHHHhcCccChhhcceEEeccccccccCcc
Confidence 3567889999999999999 99999999999999883 45655544444 447888889998888877665533
No 137
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=51.48 E-value=10 Score=30.88 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhccccccccCCcccHHHHHHHHHHh
Q 013124 304 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQV 338 (449)
Q Consensus 304 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 338 (449)
.-....+..++...|.|++ |+++.+||.-+|.-+
T Consensus 39 ~L~~~~L~~IW~LaD~~~d-G~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 39 GLPRDVLAQIWNLADIDND-GKLDFEEFAIAMHLI 72 (104)
T ss_dssp TSSHHHHHHHHHHH-SSSS-SEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcCCCC-CcCCHHHHHHHHHHH
Confidence 3455778899999999999 999999999888643
No 138
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=49.86 E-value=15 Score=36.16 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=64.7
Q ss_pred HHHHHhhhhhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 298 IIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 298 ~id~ll~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
+.+..+..-...++++|+.+-.+.+ +......+..+-..+. ...-+....++.-||..+|.|.||.+|-.|...+-+
T Consensus 201 Ct~qeL~~lg~RL~dWF~~lhe~s~-~~~~~ss~~~~~~~~d--~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 201 CTDQELRRLGNRLRDWFKALHEDSS-QNDKTSSLHSAASGFD--TSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhcccccccc--cccCcchhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 3444555566778899999988877 7777777766543322 001257789999999999999999999999955444
Q ss_pred h------hhccccccccccCCcc
Q 013124 378 N------LSCSAQIENNCNDNME 394 (449)
Q Consensus 378 ~------~~~~~~~~~~~~g~~~ 394 (449)
. +..+...|....|.+.
T Consensus 278 dknE~CikpFfnsCD~~kDg~iS 300 (434)
T KOG3555|consen 278 DKNEACIKPFFNSCDTYKDGSIS 300 (434)
T ss_pred cCchhHHHHHHhhhcccccCccc
Confidence 3 3334455555666664
No 139
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=49.16 E-value=36 Score=23.16 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHH
Q 013124 328 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 376 (449)
Q Consensus 328 ~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l 376 (449)
.+|...+|..|| +++.|++..+..+.. ...++.+|.++.-
T Consensus 3 ~~d~~~AL~~LG-------y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG-------YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 367889999998 689999999999875 4446677766544
No 140
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=45.73 E-value=22 Score=30.61 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=28.8
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC-------CcceehHHHHHHH
Q 013124 324 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-------NGVVNYEEFKQRM 376 (449)
Q Consensus 324 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~-------dG~id~~EF~~~l 376 (449)
+.|+..||.++=+-+. .+...+++++++|..+| .+.|||+.|...|
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 6899999988654443 46778999999996444 4689999996666
No 141
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.20 E-value=6.5 Score=44.22 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=53.3
Q ss_pred hhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHH
Q 013124 308 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 308 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
....++|...|.+++ |.|+-.+.+..+..- +++.+.++.+|...|.++.|.+++.||.-.|.
T Consensus 283 ~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~-------gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDND-GSISSNEARNIFLPF-------GLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHhccccCC-CcccccccccccccC-------CCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 334458999999999 999999999988774 47889999999999999999999999966553
No 142
>PF14658 EF-hand_9: EF-hand domain
Probab=40.80 E-value=25 Score=26.05 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=26.9
Q ss_pred hhhhhhhhccccccccCCcccHHHHHHHHHH
Q 013124 307 SLAENDAFAFFKADNNGDVITHSAFCEALRQ 337 (449)
Q Consensus 307 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 337 (449)
..++.++-+.+|+++.+|.|+.++|+.+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4578888999999986699999999999975
No 143
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.51 E-value=39 Score=29.06 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=41.8
Q ss_pred hhccccccccCCcccHHHHH---HHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 313 AFAFFKADNNGDVITHSAFC---EALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 313 ~F~~~D~d~~~G~I~~~el~---~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
+|.+.+.| |.++..|.. ++++.. ++++.++++.++.....-+.-.+||-.|...|..
T Consensus 35 lf~Vm~AD---G~v~~~E~~a~r~il~~~------f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 35 LFHVMEAD---GTVSESEREAFRAILKEN------FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHhcc---cCcCHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56676666 568888754 444432 3789999999999887777788888888766653
No 144
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=36.38 E-value=37 Score=27.11 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 324 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 324 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
|.++..|...+-.-+.- ...+++++.+.++..+....+...++.+|.+.+..
T Consensus 14 G~v~~~E~~~i~~~l~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 14 GEYDEEERAAIDRLLAE---RFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred CCCCHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999887655433210 01578899999999888777777899999877643
No 145
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=33.16 E-value=48 Score=28.66 Aligned_cols=55 Identities=11% Similarity=0.302 Sum_probs=41.6
Q ss_pred cccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHH--HHHHHhhCCCCCcceehHHHHHHHH
Q 013124 316 FFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQET--DDLWAQADVDGNGVVNYEEFKQRMW 377 (449)
Q Consensus 316 ~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~--~~l~~~~D~d~dG~id~~EF~~~l~ 377 (449)
.|-.|+. |.++.++|-.++.-+. ...+.++ .-.++..|-|+|+.|--.+....+.
T Consensus 79 ~FSeDG~-GnlsfddFlDmfSV~s------E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 79 VFSEDGR-GNLSFDDFLDMFSVFS------EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HhccCCC-CcccHHHHHHHHHHHH------hhChHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 4457999 9999999999987765 3444444 4567788999999998888765553
No 146
>PLN02230 phosphoinositide phospholipase C 4
Probab=33.02 E-value=94 Score=33.55 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=48.6
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhC-------CCCCcceehHHHHHHHHh
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD-------VDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D-------~d~dG~id~~EF~~~l~~ 378 (449)
...++..+|..+- ++. ++++.++|.+.|..-. +.....+.++++.++..+- .-+.+.++++.|..+|+.
T Consensus 27 p~~ei~~lf~~~s-~~~-~~mt~~~l~~FL~~~Q--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYA-DGD-AHMSPEQLQKLMAEEG--GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3456777888774 444 6999999999998754 1112346777888886542 123456999999998876
Q ss_pred h
Q 013124 379 L 379 (449)
Q Consensus 379 ~ 379 (449)
.
T Consensus 103 ~ 103 (598)
T PLN02230 103 T 103 (598)
T ss_pred c
Confidence 4
No 147
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=32.96 E-value=40 Score=31.96 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhCCCcEEEecc
Q 013124 80 NRNQTILDWLICERSSVICLQE 101 (449)
Q Consensus 80 ~R~~~i~~~I~~~~pDIIcLQE 101 (449)
.|.+.|++.-......||||||
T Consensus 100 ~r~kaiieaaa~agvniiclqe 121 (387)
T KOG0808|consen 100 DRLKAIIEAAAVAGVNIICLQE 121 (387)
T ss_pred HHHHHHHHHHHhcCccEEEeeh
Confidence 4778888888888999999999
No 148
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=32.41 E-value=50 Score=35.45 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=48.4
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHH
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 372 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF 372 (449)
...-+..+|+.+|.+.+ |.|+..+|-..|..+- ..-..+.+.-+++.+|.+++ ..+-+|-
T Consensus 553 s~~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~-----~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMT-GLLTFKDLVSGLSILK-----AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCc-ceeEHHHHHHHHHHHH-----hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34456679999999999 9999999999998875 23445667889999999998 8877776
No 149
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=51 Score=33.19 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=39.8
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHH
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 372 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF 372 (449)
..++|-.+-+- + |+|+-.--++-|... .+...-+-++|+.+|.|.||.+|-+||
T Consensus 446 yde~fy~l~p~-~-gk~sg~~ak~~mv~s-------klpnsvlgkiwklad~d~dg~ld~eef 499 (532)
T KOG1954|consen 446 YDEIFYTLSPV-N-GKLSGRNAKKEMVKS-------KLPNSVLGKIWKLADIDKDGMLDDEEF 499 (532)
T ss_pred hHhhhhccccc-C-ceeccchhHHHHHhc-------cCchhHHHhhhhhhcCCcccCcCHHHH
Confidence 34455555433 3 788876666655542 567778899999999999999999999
No 150
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=31.67 E-value=86 Score=23.11 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhC
Q 013124 325 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD 360 (449)
Q Consensus 325 ~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D 360 (449)
-|+.+-++.++.++| ..+++..++++++.+.
T Consensus 31 pine~mir~M~~QMG-----~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 31 PINEKMIRAMMMQMG-----RKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHH
Confidence 699999999999999 6999999999998753
No 151
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=30.81 E-value=12 Score=30.97 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHhhCCCCCcceehHHHHH
Q 013124 346 GLSFQETDDLWAQADVDGNGVVNYEEFKQ 374 (449)
Q Consensus 346 ~~~~~e~~~l~~~~D~d~dG~id~~EF~~ 374 (449)
......+.-+|.++|.|+||.++-.|...
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~ 78 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKP 78 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGG
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHH
Confidence 45677889999999999999999999844
No 152
>PLN02952 phosphoinositide phospholipase C
Probab=29.24 E-value=1.5e+02 Score=32.06 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=49.0
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhC-------CCCCcceehHHHHHHHHh
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD-------VDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D-------~d~dG~id~~EF~~~l~~ 378 (449)
...++..+|..+-. +. +.++.++|...|.... ++ ...+.++++.|+..+- ..+.+.++++.|...|..
T Consensus 36 ~r~ei~~lf~~~~~-~~-~~mt~~~l~~FL~~~Q--~e-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFSV-GG-GHMGADQLRRFLVLHQ--DE-LDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHhC-CC-CccCHHHHHHHHHHhC--CC-cCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 45788889988854 33 6899999999998864 11 1367778888876541 123356899999998876
Q ss_pred h
Q 013124 379 L 379 (449)
Q Consensus 379 ~ 379 (449)
.
T Consensus 111 ~ 111 (599)
T PLN02952 111 D 111 (599)
T ss_pred c
Confidence 4
No 153
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=28.97 E-value=51 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=22.1
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC
Q 013124 324 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 363 (449)
Q Consensus 324 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~ 363 (449)
|+||+.|+..+|... .++.++++.++..+...|
T Consensus 20 G~lT~~eI~~~L~~~-------~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 20 GYLTYDEINDALPED-------DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHcCcc-------CCCHHHHHHHHHHHHHCC
Confidence 999999999999753 478899999998876554
No 154
>PLN02222 phosphoinositide phospholipase C 2
Probab=28.60 E-value=1e+02 Score=33.09 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=49.1
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCC-CCCcceehHHHHHHHHhh
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV-DGNGVVNYEEFKQRMWNL 379 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~-d~dG~id~~EF~~~l~~~ 379 (449)
...++..+|..+-. + +.++.++|...|....- . ...+.+.++.||..+.. -..+.++++.|..+|...
T Consensus 23 ~~~ei~~if~~~~~--~-~~mt~~~l~~FL~~~Q~--~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--N-GVMTVDHLHRFLIDVQK--Q-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--C-CCcCHHHHHHHHHHhcC--C-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44566677776642 4 78999999999987641 1 13578889999987632 246779999999999763
No 155
>PRK00523 hypothetical protein; Provisional
Probab=28.12 E-value=1e+02 Score=23.19 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhC
Q 013124 325 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD 360 (449)
Q Consensus 325 ~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D 360 (449)
-|+.+-++.++.++| ..+++..++++++.+.
T Consensus 39 pine~mir~M~~QMG-----qKPSekki~Q~m~~mk 69 (72)
T PRK00523 39 PITENMIRAMYMQMG-----RKPSESQIKQVMRSVK 69 (72)
T ss_pred CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHH
Confidence 699999999999999 6999999999998873
No 156
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=27.79 E-value=48 Score=29.57 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=46.6
Q ss_pred hhhhhhccccccccCCcccHHHHHHHHHHhccC-------------CCCC------------------------------
Q 013124 309 AENDAFAFFKADNNGDVITHSAFCEALRQVNLA-------------GLPY------------------------------ 345 (449)
Q Consensus 309 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~-------------~~~~------------------------------ 345 (449)
.+..=..+||+|+| |.|...|--+.++.||+. ..++
T Consensus 8 ~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKD-GIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCC-eeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 34445678999999 999999977777776641 0000
Q ss_pred -----CCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 346 -----GLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 346 -----~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.+.++..++|+...+..+.+.+++.|..+++..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 122556777888887777778888888665543
No 157
>PTZ00370 STEVOR; Provisional
Probab=26.99 E-value=46 Score=32.09 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh--hhccccccccccCCccccccccccccc
Q 013124 328 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN--LSCSAQIENNCNDNMEDSKDCSEKEIL 405 (449)
Q Consensus 328 ~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~--~~~~~~~~~~~~g~~~~~e~~~~~~~~ 405 (449)
..|+++++.++. +|.+++--+..| .|+|+...|-. +.+.++.|.+-...++.+-.+.=++.+
T Consensus 56 DpemK~i~d~~n---------~eaikkyqqT~~-------~f~e~~e~~~k~~~K~k~~~d~e~k~klEKel~e~~ee~f 119 (296)
T PTZ00370 56 DPELKEIIDKMN---------EEAIKKYQQTHD-------PYEQLKEVVEKNGTKYTGGNDAEPMSTLEKELLETYEEMF 119 (296)
T ss_pred cHHHHHHHHHHh---------HHHhhhhhhhcc-------hHHHHHHHHHhcCCccccccCcchhHHHHHHHHHHHHHHh
Confidence 356777776543 555555444444 37888777733 445556555554444443333333344
Q ss_pred CceeeccccCchhhhcCCCCCCCCCCCCC
Q 013124 406 GFAVKDAFLFPSEVEKGKWPENYSLSDHA 434 (449)
Q Consensus 406 g~~v~~a~l~p~e~~~g~w~~~~~~sd~~ 434 (449)
|= .+-+. .+.||.|-+++.||.-
T Consensus 120 g~--~~~im----lksg~~~n~d~~~d~s 142 (296)
T PTZ00370 120 GD--ESDIM----LKSGMYPNDDDKSDKS 142 (296)
T ss_pred cC--ccchh----hhcCCCCCccccccCC
Confidence 43 22211 5899999999888764
No 158
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=26.25 E-value=1.5e+02 Score=28.90 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.6
Q ss_pred CCCEEEeecCCCCC
Q 013124 213 HIPIILCGDWNGSK 226 (449)
Q Consensus 213 ~~pvIl~GDFN~~p 226 (449)
+.-+|+||+|.+.|
T Consensus 64 P~~fVL~GnF~S~p 77 (291)
T PTZ00235 64 PVGFIFMGDFISLK 77 (291)
T ss_pred CeEEEEecCccCCc
Confidence 44479999999998
No 159
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=25.50 E-value=79 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCC
Q 013124 324 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 363 (449)
Q Consensus 324 G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~ 363 (449)
+-++..++.+.|..-| +.++++.+...++.+|.+|
T Consensus 12 ~P~g~~~l~~~L~~~g-----~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRG-----EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHCC
Confidence 5799999999998877 5899999999999998876
No 160
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.69 E-value=2.2e+02 Score=24.24 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=11.5
Q ss_pred CCceEEEEEeeecC
Q 013124 168 GQQEILIVNTHLLF 181 (449)
Q Consensus 168 ~g~~v~v~ntHL~~ 181 (449)
.+..+..++.|+..
T Consensus 57 ~~~~~~~v~~hl~~ 70 (145)
T KOG0565|consen 57 SQTSFCFVISHLTS 70 (145)
T ss_pred cCceEEEEEecccc
Confidence 56788999999965
No 161
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.28 E-value=3e+02 Score=21.73 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred hhhhhccccccccCCcccHHHHHHHHHHh-cc---CCCC--CCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh
Q 013124 310 ENDAFAFFKADNNGDVITHSAFCEALRQV-NL---AGLP--YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 378 (449)
Q Consensus 310 ~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~---~~~~--~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~ 378 (449)
.+-+|+.+ .|.+ |.++..-|...|..+ .+ .++. .+-.+..++..+... ..+-.|+.++|+..|..
T Consensus 5 yRylFsli-sd~~-g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 5 YRYLFSLI-SDSN-GCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHH-S-TT-S-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHH-cCCC-CCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 34466666 5777 999999988877653 11 0111 123677788888886 35667999999998854
No 162
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=23.77 E-value=1.4e+02 Score=21.63 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 013124 325 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 359 (449)
Q Consensus 325 ~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 359 (449)
.+|.+||.+.+..|+ ..++.+++--||..+
T Consensus 9 ~lTeEEl~~~i~~L~-----~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLD-----EIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhc-----CCCCHHHHHHHHHHH
Confidence 477777777777776 567777777777654
No 163
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=23.56 E-value=89 Score=26.82 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=41.2
Q ss_pred CcccHHHHHHHHHHh----ccCCCCCCCCHHHHHHHHHhhCCCCCcc-eehHHHHHH
Q 013124 324 DVITHSAFCEALRQV----NLAGLPYGLSFQETDDLWAQADVDGNGV-VNYEEFKQR 375 (449)
Q Consensus 324 G~I~~~el~~~l~~l----g~~~~~~~~~~~e~~~l~~~~D~d~dG~-id~~EF~~~ 375 (449)
-.||.+||.+++..- .+.|.+-.++.++++++.+.+...+.+. ++..|-++.
T Consensus 82 ~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 82 EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 479999999998752 2335666789999999999999877664 988887664
No 164
>PLN02228 Phosphoinositide phospholipase C
Probab=22.59 E-value=1.8e+02 Score=31.20 Aligned_cols=68 Identities=10% Similarity=0.213 Sum_probs=47.2
Q ss_pred hhhhhhhhhccccccccCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCC----CCcceehHHHHHHHHhh
Q 013124 306 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKQRMWNL 379 (449)
Q Consensus 306 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d----~dG~id~~EF~~~l~~~ 379 (449)
...++..+|..+-. + +.++.++|...|....- . ...+.+.+++++..+... ..|.++.+.|..+|...
T Consensus 22 ~~~ei~~if~~~s~--~-~~~t~~~~~~FL~~~Q~--~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--N-GKMSFDELLRFVSEVQG--E-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--C-CccCHHHHHHHHHHhcC--C-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 34455566655532 3 67999999999987641 1 135567788999887543 34789999999988653
No 165
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=22.33 E-value=1.1e+02 Score=17.16 Aligned_cols=16 Identities=0% Similarity=0.065 Sum_probs=11.8
Q ss_pred cccccCCcccHHHHHHH
Q 013124 318 KADNNGDVITHSAFCEA 334 (449)
Q Consensus 318 D~d~~~G~I~~~el~~~ 334 (449)
|.|+| |.|+.-++..+
T Consensus 1 DvN~D-G~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGD-GKVNAIDLALL 16 (21)
T ss_dssp -TTSS-SSSSHHHHHHH
T ss_pred CCCCC-CcCCHHHHHHH
Confidence 67888 99999887543
No 166
>PRK01844 hypothetical protein; Provisional
Probab=21.94 E-value=1.6e+02 Score=22.28 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Q 013124 325 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 359 (449)
Q Consensus 325 ~I~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 359 (449)
-|+.+-++..+.++| ..+++..++++++.+
T Consensus 38 pine~mir~Mm~QMG-----qkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMG-----QKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 699999999999999 699999999999887
No 167
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.71 E-value=89 Score=32.49 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.5
Q ss_pred hhhhhhhhhhccccccccCCcccHHHHHHHHHHh
Q 013124 305 KASLAENDAFAFFKADNNGDVITHSAFCEALRQV 338 (449)
Q Consensus 305 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 338 (449)
...+++..++.+-|.|.| |.++..||+.++.-+
T Consensus 262 lpi~ELshIWeLsD~d~D-GALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 262 LPIEELSHIWELSDVDRD-GALTLSEFCAAFHLV 294 (737)
T ss_pred CchHHHHHHHhhcccCcc-ccccHHHHHhhHhhe
Confidence 456788889999999999 999999999998554
No 168
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.54 E-value=84 Score=30.34 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhCCCCCcceehHHHHHHHHh--hhccccccccccCCccccccccccccc
Q 013124 328 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN--LSCSAQIENNCNDNMEDSKDCSEKEIL 405 (449)
Q Consensus 328 ~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~--~~~~~~~~~~~~g~~~~~e~~~~~~~~ 405 (449)
..|+++++.++. +|.+++--+..| .|+|+.+.|-. +.+.++.|.+-...++.+-.+.=...+
T Consensus 57 DpEmK~iid~~n---------~eaikkyqqT~~-------~f~e~~e~~~k~~~K~k~~~d~e~~~klEKel~e~~~~~f 120 (295)
T TIGR01478 57 DPELKEIIDKLN---------EEAIKKYQETHD-------PYEQLQELVEKNRTKSTGGNGAEPMSTIEKELLEKYEEMF 120 (295)
T ss_pred cHHHHHHHHHHh---------HHHhhhhhhhcc-------hHHHHHHHHHhcCCcccccCCcchhhHHHHHHHHHHHHHh
Confidence 355666665532 444444444433 48888777733 555566666666555443333323334
Q ss_pred CceeeccccCchhhhcCCCCCCCCCCC
Q 013124 406 GFAVKDAFLFPSEVEKGKWPENYSLSD 432 (449)
Q Consensus 406 g~~v~~a~l~p~e~~~g~w~~~~~~sd 432 (449)
|= .+-.. ++.||.|-+++.|+
T Consensus 121 g~--e~~im----lksgm~~n~d~~s~ 141 (295)
T TIGR01478 121 GD--ESHIM----LKSGMYTNDDDKLK 141 (295)
T ss_pred CC--ccchh----hhcCCCCCcccccc
Confidence 42 22211 68899998887665
No 169
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=20.47 E-value=2.2e+02 Score=25.50 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=42.5
Q ss_pred hhhhccccccccCCcccHHHHHHHHHHhccCCCCCCC--CHHHHHHHHHhhCCCCCcceehHHHHHHHHhhhccc
Q 013124 311 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGL--SFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSA 383 (449)
Q Consensus 311 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~~~~~~~--~~~e~~~l~~~~D~d~dG~id~~EF~~~l~~~~~~~ 383 (449)
.++|..+++.+. +.+|..|+.++++.-....++... +.-|...+...+ .|.||.+.-+.- +.+++.+.+.
T Consensus 99 e~iF~kya~~~~-d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~i-R~vYDGSlF~ 170 (174)
T PF05042_consen 99 EEIFSKYAKTGP-DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDI-RGVYDGSLFY 170 (174)
T ss_pred HHHHHHhCCCCC-CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHH-hhhcchHHHH
Confidence 367888888777 899999999999762211111222 233443444333 566888876665 6666655443
Done!