Query 013127
Match_columns 449
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p8i_A Putative dioxygenase; Y 13.1 62 0.0021 28.1 1.1 27 391-417 58-86 (117)
2 2peb_A Putative dioxygenase; s 12.0 70 0.0024 28.0 1.1 18 400-417 66-83 (122)
3 1qz7_B Axin; beta-catenin, pro 8.0 1.4E+02 0.0047 24.0 1.3 21 231-251 21-44 (70)
4 1v54_L VIIIA, cytochrome C oxi 7.7 3.7E+02 0.013 19.7 3.5 24 64-87 16-39 (47)
5 3nkl_A UDP-D-quinovosamine 4-d 7.4 2.4E+02 0.0083 22.6 2.7 23 401-424 17-39 (141)
6 2oqp_A Interleukin-21, IL-21, 7.2 2.1E+02 0.0071 25.5 2.2 25 91-115 92-116 (134)
7 2ic6_A Nucleocapsid protein; h 6.8 1.7E+02 0.0059 23.9 1.4 16 394-409 44-59 (78)
8 1xou_A ESPA; coiled coil, heli 6.6 1.1E+02 0.0036 28.8 0.0 28 402-429 106-138 (192)
9 3tqu_A Non-canonical purine NT 6.5 1.9E+02 0.0066 26.8 1.7 12 47-58 15-26 (203)
10 2kdr_X NS4B, P27, non-structur 6.4 3.5E+02 0.012 18.3 2.4 21 110-130 3-23 (28)
No 1
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=13.09 E-value=62 Score=28.10 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=19.9
Q ss_pred hhhhhhhHh--HHHHHHHhhcCCCceEEE
Q 013127 391 ASYMCSYHR--RQAYVMYLQANPGGITIF 417 (449)
Q Consensus 391 ~~~~~Sfqk--RQAlVtYLq~N~~GITvf 417 (449)
++|...|-. -.++|.||+.||||.+|+
T Consensus 58 ~s~qv~f~~~~f~~~v~WL~~nrg~LsVL 86 (117)
T 2p8i_A 58 WSYQLAFTQEQFADLVGWLTLNHGALDIF 86 (117)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHCTTCCEE
T ss_pred ceEEEEcCHHHHHHHHHHHHHhCCCCeEE
Confidence 344344433 458999999999999997
No 2
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=11.98 E-value=70 Score=28.00 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHHHHHHhhcCCCceEEE
Q 013127 400 RQAYVMYLQANPGGITIF 417 (449)
Q Consensus 400 RQAlVtYLq~N~~GITvf 417 (449)
-.++|.||+.||||.+|+
T Consensus 66 f~~~v~WL~lnrg~LsVL 83 (122)
T 2peb_A 66 FDKVVPWLMLNREGLDIL 83 (122)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCceEE
Confidence 448999999999999997
No 3
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=7.96 E-value=1.4e+02 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=14.7
Q ss_pred cHHHHHhh---ccCHHHHHHHHHH
Q 013127 231 DYAKLLAM---ESDVVVLIEEHMR 251 (449)
Q Consensus 231 ~~~klfe~---~sdv~~il~EH~R 251 (449)
||..++-+ |.|..+||.||+.
T Consensus 21 g~~g~~~rd~~EedPesILDeHvs 44 (70)
T 1qz7_B 21 GCVGMQIRDAHEENPESILDEHVQ 44 (70)
T ss_pred cccccccccccccChHHHHHHHHH
Confidence 34444444 4689999999974
No 4
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=7.70 E-value=3.7e+02 Score=19.67 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhh
Q 013127 64 SSVLSFVLSWTAFVVTGVLVPVVI 87 (449)
Q Consensus 64 Ss~~~~~~Sw~~F~~l~v~vP~~~ 87 (449)
.+....++-|.+|+..|+.+|.++
T Consensus 16 ~nk~~~~~~~~~f~g~GF~~PF~i 39 (47)
T 1v54_L 16 ENKWRLLAMMTLFFGSGFAAPFFI 39 (47)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhHHHH
Confidence 355566777888999999999876
No 5
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=7.43 E-value=2.4e+02 Score=22.65 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCceEEEEEeehhh
Q 013127 401 QAYVMYLQANPGGITIFGWTVDRA 424 (449)
Q Consensus 401 QAlVtYLq~N~~GITvfGf~lDR~ 424 (449)
+.+..++++++ |..+.||+-|..
T Consensus 17 ~~l~~~l~~~~-g~~vvg~~d~~~ 39 (141)
T 3nkl_A 17 LQLANMLRQGK-EFHPIAFIDDDR 39 (141)
T ss_dssp HHHHHHHHHSS-SEEEEEEECSCG
T ss_pred HHHHHHHHhCC-CcEEEEEEECCc
Confidence 35678888876 899999987754
No 6
>2oqp_A Interleukin-21, IL-21, ZA11; four helix bundle, cytokine, multiple conformers; NMR {Homo sapiens} SCOP: a.26.1.2 PDB: 3tgx_B*
Probab=7.24 E-value=2.1e+02 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.1
Q ss_pred cCCCCCCccCCccchhHHHHHhhHH
Q 013127 91 SNCPGCEKGQIKDFELCIVASQACL 115 (449)
Q Consensus 91 ~~c~~cd~~~~~~f~~~Vq~s~s~l 115 (449)
..|++||.|..+|+..-++--+|++
T Consensus 92 ~~CpsCeSYp~k~~~eFlerL~SLL 116 (134)
T 2oqp_A 92 LTCPSCDSYEKKPPKEFLERFKSLL 116 (134)
T ss_dssp CCCCCSTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCccccCcCCHHHHHHHHHHHH
Confidence 4799999999999776666555554
No 7
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=6.82 E-value=1.7e+02 Score=23.87 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.0
Q ss_pred hhhhHhHHHHHHHhhc
Q 013127 394 MCSYHRRQAYVMYLQA 409 (449)
Q Consensus 394 ~~SfqkRQAlVtYLq~ 409 (449)
-.+|++|++-|.-||+
T Consensus 44 K~~~~~R~~~V~~lq~ 59 (78)
T 2ic6_A 44 KSTLQSRRAAVSALET 59 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4799999999998886
No 8
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=6.55 E-value=1.1e+02 Score=28.81 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCceEEEEEe-----ehhhhHHHH
Q 013127 402 AYVMYLQANPGGITIFGWT-----VDRALINTI 429 (449)
Q Consensus 402 AlVtYLq~N~~GITvfGf~-----lDR~~L~TI 429 (449)
..+.|++.-|-||||=|-. ||.|=|-++
T Consensus 106 dVI~Ymrd~~NgItVdG~s~IddyLdkG~LqaV 138 (192)
T 1xou_A 106 EVISYINDPRNDITISGIDNINAQLGAGDLQTV 138 (192)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHccCCCeeecCchhHHHHhccccHHHH
Confidence 4589999999999999999 888776654
No 9
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=6.50 E-value=1.9e+02 Score=26.85 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=6.9
Q ss_pred HHHHhHHHHhhh
Q 013127 47 RTLQKLEYFLTF 58 (449)
Q Consensus 47 deLr~fr~~L~w 58 (449)
..++.++..|.-
T Consensus 15 ~K~~E~~~iL~~ 26 (203)
T 3tqu_A 15 SKLAEMQELLRD 26 (203)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhhh
Confidence 555666666643
No 10
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=6.35 E-value=3.5e+02 Score=18.27 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHhhHHHHHHHHHhhhhhhhh
Q 013127 110 ASQACLAAISLICMSHNLRKY 130 (449)
Q Consensus 110 ~s~s~lAavsf~cLS~~~rky 130 (449)
++.-.-|.+|-+++.+.+||+
T Consensus 3 as~~VtaiLssLTvTsLlr~l 23 (28)
T 2kdr_X 3 AAARVTAILSSLTVTQLLRRL 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999975
Done!