Query 013127
Match_columns 449
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 04:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ql3a_ a.3.1.1 (A:) Cytochrom 29.9 14 0.001 28.4 2.6 26 384-410 72-98 (99)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 23.3 1E+02 0.0073 26.1 7.4 60 69-138 34-94 (447)
3 d1hroa_ a.3.1.1 (A:) Cytochrom 15.6 39 0.0028 25.8 2.5 17 394-410 88-104 (105)
4 d2p8ia1 d.58.55.1 (A:1-115) Pu 15.0 24 0.0017 28.6 1.1 18 400-417 68-85 (115)
5 d1g2ha_ a.4.1.12 (A:) Transcri 14.9 25 0.0018 24.8 1.1 18 117-134 44-61 (61)
6 d1vd6a1 c.1.18.3 (A:8-224) Put 9.1 71 0.0052 25.3 2.2 22 400-423 168-189 (217)
7 d1c6sa_ a.3.1.1 (A:) Cytochrom 8.1 1.8E+02 0.013 20.0 3.9 17 394-410 64-80 (87)
8 d1ixra2 b.40.4.2 (A:1-62) DNA 7.0 55 0.004 23.1 0.4 18 402-419 45-62 (62)
9 d3dhxa1 d.58.18.13 (A:2-100) M 6.2 1.8E+02 0.013 21.4 3.3 25 397-421 74-98 (99)
10 d1ow5a_ a.60.1.2 (A:) Serine/t 6.1 98 0.0071 21.0 1.4 43 224-266 7-53 (60)
No 1
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=29.88 E-value=14 Score=28.37 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=17.7
Q ss_pred CCCcccchhh-hhhhHhHHHHHHHhhcC
Q 013127 384 MPTNTQLASY-MCSYHRRQAYVMYLQAN 410 (449)
Q Consensus 384 ~~~~~~~~~~-~~SfqkRQAlVtYLq~N 410 (449)
+|.++ +|.. ..+=+.|++++.||+..
T Consensus 72 ~pgt~-M~~~gl~~~~d~~dliaYLks~ 98 (99)
T d1ql3a_ 72 VKGTK-MAFAGLPKIEDRANLIAYLEGQ 98 (99)
T ss_dssp STTCS-CCCCCCCCHHHHHHHHHHHHHT
T ss_pred CCCCC-CCCCCCCCHHHHHHHHHHHhhc
Confidence 34444 3433 45678999999999875
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=23.26 E-value=1e+02 Score=26.14 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcCCCCCCccCCccch-hHHHHHhhHHHHHHHHHhhhhhhhhccceeeec
Q 013127 69 FVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFE-LCIVASQACLAAISLICMSHNLRKYGIRKFLFV 138 (449)
Q Consensus 69 ~~~Sw~~F~~l~v~vP~~~~~~~~c~~cd~~~~~~f~-~~Vq~s~s~lAavsf~cLS~~~rkyGLRr~Lfl 138 (449)
..+.+.....++++.|.+.- .+-.+-+ +.+........+++-+-...+..|||.||.+.+
T Consensus 34 ~~~~~~~~~~~~~~~p~~~~----------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 34 YAAYYLVRKNFALAMPYLVE----------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHTSHHHHHHHTTS----------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 34444444456777776431 1222323 344444445555666667778889999987754
No 3
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}
Probab=15.57 E-value=39 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=13.5
Q ss_pred hhhhHhHHHHHHHhhcC
Q 013127 394 MCSYHRRQAYVMYLQAN 410 (449)
Q Consensus 394 ~~SfqkRQAlVtYLq~N 410 (449)
..+=|.|+.+|.||+.-
T Consensus 88 l~~~~~~~dliaYL~sL 104 (105)
T d1hroa_ 88 QPDPQKRADIIAYLETL 104 (105)
T ss_dssp CCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 34578899999999863
No 4
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=15.00 E-value=24 Score=28.58 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.1
Q ss_pred HHHHHHHhhcCCCceEEE
Q 013127 400 RQAYVMYLQANPGGITIF 417 (449)
Q Consensus 400 RQAlVtYLq~N~~GITvf 417 (449)
-.++|.+|+-||||.||+
T Consensus 68 F~~vv~WL~~nRg~LsVl 85 (115)
T d2p8ia1 68 FADLVGWLTLNHGALDIF 85 (115)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCceEE
Confidence 456899999999999997
No 5
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=14.93 E-value=25 Score=24.81 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhhhhccce
Q 013127 117 AISLICMSHNLRKYGIRK 134 (449)
Q Consensus 117 avsf~cLS~~~rkyGLRr 134 (449)
.|+--+|.+.++|||++|
T Consensus 44 gisr~tL~rKlkk~gi~k 61 (61)
T d1g2ha_ 44 GVSHTAIANKLKQYGIGK 61 (61)
T ss_dssp TSCTHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 456678889999999876
No 6
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=9.14 E-value=71 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.0
Q ss_pred HHHHHHHhhcCCCceEEEEEeehh
Q 013127 400 RQAYVMYLQANPGGITIFGWTVDR 423 (449)
Q Consensus 400 RQAlVtYLq~N~~GITvfGf~lDR 423 (449)
.+++|..+..+ |+.||.||+|-
T Consensus 168 ~~~~v~~~~~~--g~~v~~wTvn~ 189 (217)
T d1vd6a1 168 TEEAVAGWRKR--GLFVVAWTVNE 189 (217)
T ss_dssp CHHHHHHHHHT--TCEEEEECCCC
T ss_pred HHHHHHHHHHC--CCEEEEECCCC
Confidence 35688888865 99999999965
No 7
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=8.14 E-value=1.8e+02 Score=20.04 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=12.8
Q ss_pred hhhhHhHHHHHHHhhcC
Q 013127 394 MCSYHRRQAYVMYLQAN 410 (449)
Q Consensus 394 ~~SfqkRQAlVtYLq~N 410 (449)
..|=+...+++.|+.++
T Consensus 64 ~Ls~~ei~~v~aYi~~~ 80 (87)
T d1c6sa_ 64 RLTDEQIQDVAAYVLDQ 80 (87)
T ss_dssp TSCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45667789999999553
No 8
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.01 E-value=55 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=15.1
Q ss_pred HHHHHhhcCCCceEEEEE
Q 013127 402 AYVMYLQANPGGITIFGW 419 (449)
Q Consensus 402 AlVtYLq~N~~GITvfGf 419 (449)
.+-||++-...++++|||
T Consensus 45 ~l~t~~~vrED~~~LyGF 62 (62)
T d1ixra2 45 GVHTHLLLKEEGLSLYGF 62 (62)
T ss_dssp EEEECCCCCSSCCCEEEE
T ss_pred EEEEEEEEecCCCCccCC
Confidence 356788888899999998
No 9
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=6.21 E-value=1.8e+02 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.1
Q ss_pred hHhHHHHHHHhhcCCCceEEEEEee
Q 013127 397 YHRRQAYVMYLQANPGGITIFGWTV 421 (449)
Q Consensus 397 fqkRQAlVtYLq~N~~GITvfGf~l 421 (449)
=++.|+...||+.+.--+.|-|+++
T Consensus 74 ~~~i~~al~~L~~~~v~vEvlgyV~ 98 (99)
T d3dhxa1 74 QQDTQAAIAWLQEHHVKVEVLGYVL 98 (99)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEeeeec
Confidence 3677888999999999999999987
No 10
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.06 E-value=98 Score=21.00 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=0.0
Q ss_pred hhhhhhhcHHHHHhh----ccCHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013127 224 LQVMHFDDYAKLLAM----ESDVVVLIEEHMRLRYHLSKISHRFRIY 266 (449)
Q Consensus 224 LQiLR~~~~~klfe~----~sdv~~il~EH~RIR~qL~~ISHRfR~F 266 (449)
|+-+.|+.|...|.. +-+...-|.|--=-.=...++.||-|+.
T Consensus 7 L~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL~~lGI~~~ghr~ril 53 (60)
T d1ow5a_ 7 LEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKIL 53 (60)
T ss_dssp HHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHH
Done!