BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013128
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAA 262
K + FK +A + E K E+ E + +F+ E Y +G +G LL GPPGTGK+ L A
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKA 63
Query: 263 MANQLKFDIYDLDLSAV------QSNSELRFLLLTMPSR--SMLVIEDIDCSVKLQNRES 314
+A + + + S+ S +R L T + S++ I++ID K +R +
Sbjct: 64 VAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK--SRAA 121
Query: 315 SEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHL 373
V + N E + TL+ LL +DG S I++ TN E LDPAL+RPGR D +
Sbjct: 122 GGVVSGNDEREQ-TLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQV 178
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+TF + +E RE+ E +E + E + R+G +G LLYGPPGTGK+ L A+A
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 266 QLKFDIYDLDLSAV------QSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEV 317
+ + S + +S +R F ++ ++++D + R SE
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA---IGGRRFSEG 294
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSY 377
+ ++E + TL LL +DG + G+ +II+ TN + LDPALLRPGR+D + +
Sbjct: 295 TSADREIQR-TLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPL 351
Query: 378 CNTS 381
N +
Sbjct: 352 PNEA 355
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+TFK + E E+ E +E F+ + RIG +G LL GPPGTGK+ L A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 266 QLKFDIYDL------DLSAVQSNSELRFLLLTMPSRS--MLVIEDIDCSVKLQNRESSEV 317
+ + + +L + +R L + + ++ I++ID R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV----GRHRGAG 127
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370
+E + TL+ LL +DG S EG I++ TN + LDPALLRPGR D
Sbjct: 128 LGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFD 178
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Query: 218 KREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLS 277
K+EI E +E + + Y +IG RG LLYGPPGTGK+ L+ A+AN K ++ S
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 278 AV------QSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTL 329
+ +R F L + S++ I+++D + + Q + E + L
Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT----KRFDAQTGSDREVQRIL 296
Query: 330 SGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFN 389
LL +DG ++ TN + LDPALLRPGR+D + ++L F
Sbjct: 297 IELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFG 354
Query: 390 YLG 392
+
Sbjct: 355 TIA 357
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ 266
TF +A E K E+ E +E ++ + ++G +G L+ GPPGTGK+ L A+A +
Sbjct: 10 TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 267 LKF--------DIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQ 318
K D ++ + S F + ++ I++ID R+
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV----GRQRGAGL 124
Query: 319 ATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYC 378
+E + TL+ +L +DG EG I++ TN + LDPALLRPGR D + +
Sbjct: 125 GGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 182
Query: 379 NTSVFKQL 386
+ +Q+
Sbjct: 183 DVRGREQI 190
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+TFK + E E+ E +E F+ + RIG +G LL GPPGTG + L A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 266 QLKFDIYDL------DLSAVQSNSELRFLLLTMPSRS--MLVIEDIDCSVKLQNRESSEV 317
+ + + +L + +R L + + ++ I++ID R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV----GRHRGAG 127
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370
+E + TL+ LL +DG S EG I++ TN + LDPALLRPGR D
Sbjct: 128 LGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFD 178
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
++FK +A E K E+ E +++ E + ++G +G LL GPPG GK+ L A+A
Sbjct: 3 VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 266 QLKFDIYDL------DLSAVQSNSELRFLLLTMPSRS--MLVIEDIDCSVKLQNRESSEV 317
+ + + ++ + +R L +R+ ++ I++ID K R ++
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGK--KRSTTMS 119
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHL 373
+N EE + TL+ LL +DG+ + + I++ +TN + LD AL+RPGR+D H+
Sbjct: 120 GFSNTEEEQ-TLNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 22/164 (13%)
Query: 219 REITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ-----LKFDIYD 273
+EI E +E + E + +G A +G +LYGPPGTGK+ L A+A+ ++ +
Sbjct: 158 KEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217
Query: 274 LDLSAVQSNSELRFLLLTMP---SRSMLVIEDID----CSVKLQNRESSEVQATNQEENK 326
L + S + L M + S++ +++ID V+ SEVQ T E
Sbjct: 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLE--- 274
Query: 327 VTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370
LLN +DG + + I+ TN + LDPALLRPGR+D
Sbjct: 275 -----LLNQLDGFETS--KNIKIIMATNRLDILDPALLRPGRID 311
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 19/190 (10%)
Query: 212 ALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ----- 266
L+S+++ EI E +E + E Y +G +G +LYG PGTGK+ L A+ANQ
Sbjct: 186 GLESQIQ-EIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244
Query: 267 LKFDIYDLDLSAVQSNSELR---FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQE 323
L+ +L + L F + + S++ I++ID ++ + +S+ + +
Sbjct: 245 LRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEID-AIGTKRYDSN---SGGER 300
Query: 324 ENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVF 383
E + T+ LLN +DG + G+ ++I TN E LDPAL+RPGR+D + + S
Sbjct: 301 EIQRTMLELLNQLDG-FDDRGDVKVI-MATNKIETLDPALIRPGRIDRKILFENPDLSTK 358
Query: 384 KQLAFNYLGI 393
K++ LGI
Sbjct: 359 KKI----LGI 364
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 14/160 (8%)
Query: 219 REITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ-----LKFDIYD 273
+EI E +E + E + ++G +G LLYGPPGTGK+ L A+A + ++ +
Sbjct: 27 QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86
Query: 274 LDLSAVQSNSELR---FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLS 330
L + + L F L + S++ I++ID + + + + ++E + TL
Sbjct: 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA---IAAKRTDALTGGDREVQR-TLM 142
Query: 331 GLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370
LL +DG + G+ +II TN + LDPA+LRPGR D
Sbjct: 143 QLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFD 180
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 228 FMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--------DIYDLDLSAV 279
F+ + +G +G LL GPPG GK+ L A+A + + D ++ +
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 280 QSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339
+ F + ++ I++ID + + S V N E + TL+ LL +DG
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDA---VGRKRGSGVGGGNDEREQ-TLNQLLVEMDGF 164
Query: 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQL 386
+++ TN + LDPALLRPGR D + + + +Q+
Sbjct: 165 EKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 209
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 228 FMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--------DIYDLDLSAV 279
F+ + +G +G LL GPPG GK+ L A+A + + D ++ +
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 280 QSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339
+ F + ++ I++ID + + S V N E + TL+ LL +DG
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDA---VGRKRGSGVGGGNDEREQ-TLNQLLVEMDGF 173
Query: 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQL 386
+++ TN + LDPALLRPGR D + + + +Q+
Sbjct: 174 EKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 228 FMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--------DIYDLDLSAV 279
F+ + +G +G LL GPPG GK+ L A+A + + D ++ +
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 280 QSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339
+ F + ++ I++ID + + S V N E + TL+ LL +DG
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDA---VGRKRGSGVGGGNDEREQ-TLNQLLVEMDGF 149
Query: 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQL 386
+++ TN + LDPALLRPGR D + + + +Q+
Sbjct: 150 EKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 228 FMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--------DIYDLDLSAV 279
F+ + +G +G LL GPPG GK+ L A+A + + D ++ +
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 280 QSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339
+ F + ++ I++ID + + S V N E + TL+ LL +DG
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDA---VGRKRGSGVGGGNDEREQ-TLNQLLVEMDGF 173
Query: 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQL 386
+++ TN + LDPALLRPGR D + + + +Q+
Sbjct: 174 EKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+T+ + +++ E+T + + + + +G G LL GPPG GK+ L A+AN
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 266 QLKFDIYD------LDLSAVQSNSELRFLLLTMPSRSMLVI--EDID--CSVKLQNRESS 315
+ + L++ +S +R + + + VI +++D C + +
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 316 EVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF---TTNHKEKLDPALLRPGRMDMH 372
V+ NQ LL +DGL E R VF TN + +DPA+LRPGR+D
Sbjct: 127 SVRVVNQ---------LLTEMDGL-----EARQQVFIMAATNRPDIIDPAILRPGRLDKT 172
Query: 373 LHMS 376
L +
Sbjct: 173 LFVG 176
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+T++ + ++KRE+ E ++ + + + + G +G L YGPPG GK+ L A+AN
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 266 QLKFDIYDLDLSAV------QSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEV 317
+ + + + + +S + +R F + +L +++D K + +
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMS 376
++ +L +DG+ + + I+ TN + +DPA+LRPGR+D +++
Sbjct: 132 GGAADR----VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 212 ALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ----- 266
LD +++ E+ E + M + + +G +G L+YGPPGTGK+ L A A Q
Sbjct: 185 GLDKQIE-ELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243
Query: 267 LKFDIYDLDLSAVQSNSEL---RFLLLTMPSRSMLVIEDIDC-SVKLQNRESSEVQATNQ 322
LK L + ++L F L + +++ I+++D K + E S
Sbjct: 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS-----GD 298
Query: 323 EENKVTLSGLLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLH 374
E + T+ LLN +DG S + R+ V TN + LDPALLR GR+D +
Sbjct: 299 REVQRTMLELLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 220 EITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276
+I E +E + + IG RG LLYGPPGTGK+ + A+AN+ F I ++
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
Query: 277 S---AVQSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331
A +S S LR F + +++ I+++D + + EV+ + +S
Sbjct: 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE-------RRIVSQ 327
Query: 332 LLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381
LL +DGL +IV TN +DPAL R GR D + + + +
Sbjct: 328 LLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+T++ + ++KRE+ E ++ + + + + G +G L YGPPG GK+ L A+AN
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 266 QLKFDIYDLDLSAV------QSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEV 317
+ + + + + +S + +R F + +L +++D K + +
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMS 376
++ +L +DG+ + + I+ TN + +DPA+LRPGR+D +++
Sbjct: 594 GGAADR----VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 220 EITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276
+I E +E + + IG RG LLYGPPGTGK+ + A+AN+ F I ++
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
Query: 277 S---AVQSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331
A +S S LR F + +++ I+++D + + EV+ + +S
Sbjct: 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE-------RRIVSQ 327
Query: 332 LLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381
LL +DGL +IV TN +DPAL R GR D + + + +
Sbjct: 328 LLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 220 EITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276
+I E +E + + IG RG LLYGPPGTGK+ + A+AN+ F I ++
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
Query: 277 S---AVQSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331
A +S S LR F + +++ I+++D + + EV+ + +S
Sbjct: 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE-------RRIVSQ 327
Query: 332 LLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381
LL +DGL +IV TN +DPAL R GR D + + + +
Sbjct: 328 LLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN 265
+T++ + ++KRE+ E ++ + + + + G +G L YGPPG GK+ L A+AN
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 266 QLKFDIYDLDLSAV------QSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEV 317
+ + + + + +S + +R F + +L +++D K + +
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMS 376
++ +L +DG+ + + I+ TN + +DPA+LRPGR+D +++
Sbjct: 594 GGAADR----VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 220 EITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276
+I E +E + + IG RG LLYGPPGTGK+ + A+AN+ F I ++
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
Query: 277 S---AVQSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331
A +S S LR F + +++ I+++D + + EV+ + +S
Sbjct: 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE-------RRIVSQ 327
Query: 332 LLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381
LL +DGL +IV TN +DPAL R GR D + + + +
Sbjct: 328 LLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 220 EITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276
+I E +E + + IG RG LLYGPPGTGK+ + A+AN+ F I ++
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
Query: 277 S---AVQSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331
A +S S LR F + +++ I+++D + + EV+ + +S
Sbjct: 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE-------RRIVSQ 327
Query: 332 LLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381
LL +DGL +IV TN +DPAL R GR D + + + +
Sbjct: 328 LLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 220 EITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276
+I E +E + + IG RG LLYGPPGTGK+ + A+AN+ F I ++
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274
Query: 277 S---AVQSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331
A +S S LR F + +++ I+++D + + EV+ + +S
Sbjct: 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE-------RRIVSQ 327
Query: 332 LLNFIDGLWSCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381
LL +DGL +IV TN +DPAL R GR D + + + +
Sbjct: 328 LLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 233 EYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ-----LKFDIYDLDLSAVQSNSELRF 287
E + +G +G LLYGPPGTGK+ A+AN+ ++ +L V + +
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 288 LLLTMPSRS----MLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC 343
L M +R+ ++ ++ID + + A E + T+ L+ +DG
Sbjct: 293 ELFEM-ARTKKACIIFFDEIDAVGGARFDDG----AGGDNEVQRTMLELITQLDGFDP-- 345
Query: 344 GEGRI-IVFTTNHKEKLDPALLRPGRMDMHLHMS 376
G I ++F TN LDPALLRPGR+D + S
Sbjct: 346 -RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 240 RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN--------SELRFLLLT 291
R +G LL+GPPGTGK+ + +A+Q + + S++ S F +
Sbjct: 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR 173
Query: 292 MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351
+++ I++ID L R E E ++ + L +DG + + ++V
Sbjct: 174 CQQPAVIFIDEIDS--LLSQRGDGE-----HESSRRIKTEFLVQLDGATTSSEDRILVVG 226
Query: 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKEVN 410
TN +++D A R R+ L++ S KQ+ N + L E+IE+++++ +
Sbjct: 227 ATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSD 284
Query: 411 VTPAEVAGELMKSTNAEVSLNGLVKFLH 438
+G M E SL G ++ L
Sbjct: 285 A----FSGADMTQLCREASL-GPIRSLQ 307
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 18/142 (12%)
Query: 233 EYYTRIGRAWKRGYLLYGPPGTGKSSL---IAAMANQLKFDIYDLDLSA--VQSNSELRF 287
E +T + RA RG LL+GPPG GK+ L +AA +N F+I L++ V +L
Sbjct: 139 ELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVR 197
Query: 288 LLLTMPSR---SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG 344
L + S++ I+ +D S+ + RE + ++ L+ F DG+ S G
Sbjct: 198 ALFAVARELQPSIIFIDQVD-SLLCERREGE-----HDASRRLKTEFLIEF-DGVQS-AG 249
Query: 345 EGRIIVF-TTNHKEKLDPALLR 365
+ R++V TN ++LD A+LR
Sbjct: 250 DDRVLVMGATNRPQELDEAVLR 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 245 GYLLYGPPGTGKSSL---IAAMANQLKFDIYDLDLSA--VQSNSELRFLLLTMPSR---S 296
G LLYGPPGTGKS L +A AN F + DL + + + +L L M S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 297 MLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356
++ I+++D + SE + E V ++G+ N +G +++ TN
Sbjct: 122 IIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQGVLVLGATNIP 173
Query: 357 EKLDPALLR 365
+LD A+ R
Sbjct: 174 WQLDSAIRR 182
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 233 EYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS----NSELRFL 288
E +T + RA +G LL+GPPG GK+ L A+A + ++ +++ S + E
Sbjct: 45 ELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVR 103
Query: 289 LLTMPSR----SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG 344
L +R S++ I+++D + ++ E + E V GL DG
Sbjct: 104 ALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG------ 157
Query: 345 EGRIIVF-TTNHKEKLDPALLR 365
RI+V TN ++LD A LR
Sbjct: 158 -DRIVVLAATNRPQELDEAALR 178
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 245 GYLLYGPPGTGKSSL---IAAMANQLKFDIYDLDLSA--VQSNSELRFLLLTMPSR---S 296
G LLYGPPGTGKS L +A AN F + DL + + + +L L M S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 297 MLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356
++ I+ +D + SE + E V ++G+ N +G +++ TN
Sbjct: 113 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQGVLVLGATNIP 164
Query: 357 EKLDPALLR 365
+LD A+ R
Sbjct: 165 WQLDSAIRR 173
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 245 GYLLYGPPGTGKSSL---IAAMANQLKFDIYDLDLSA--VQSNSELRFLLLTMPSR---S 296
G LLYGPPGTGKS L +A AN F + DL + + + +L L M S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 297 MLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356
++ I+ +D + SE + E V ++G+ N +G +++ TN
Sbjct: 146 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQGVLVLGATNIP 197
Query: 357 EKLDPALLR 365
+LD A+ R
Sbjct: 198 WQLDSAIRR 206
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 244 RGYLLYGPPGTGKSSLIAAMA----NQLKFDIYDLDL-SAVQSNSEL----RFLLLTMPS 294
RG LL+GPPGTGKS L A+A N F I DL S SE F L
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 295 RSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354
S++ I++ID ++ SE + E V + G+ DG+ +++ TN
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI--------LVLGATN 157
Query: 355 HKEKLDPALLR--PGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE 400
LD A+ R R+ + L + ++FK +LG + + L E
Sbjct: 158 IPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKL----HLGTTQNSLTE 201
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 245 GYLLYGPPGTGKSSL---IAAMANQLKFDIYDLDLSA--VQSNSELRFLLLTMPSR---S 296
G LLYGPPGTGKS L +A AN F + DL + + + +L L M S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 297 MLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356
++ I+ +D + SE + E V ++G+ N +G +++ TN
Sbjct: 131 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQGVLVLGATNIP 182
Query: 357 EKLDPALLR 365
+LD A+ R
Sbjct: 183 WQLDSAIRR 191
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 244 RGYLLYGPPGTGKSSLIAAMA----NQLKFDIYDLDL-SAVQSNSEL----RFLLLTMPS 294
RG LL+GPPGTGKS L A+A N F I DL S SE F L
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 295 RSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354
S++ I++ID ++ SE + E V + G+ DG+ +++ TN
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI--------LVLGATN 279
Query: 355 HKEKLDPALLR--PGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE 400
LD A+ R R+ + L ++ ++F+ +LG + + L E
Sbjct: 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRL----HLGSTQNSLTE 323
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 225 LENFMNGKE----YYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ 280
L N+ N K+ + + G R +LYGPPG GK++ +A +L +DI + + S V+
Sbjct: 55 LANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114
Query: 281 SNSEL 285
S + L
Sbjct: 115 SKTLL 119
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 248 LYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLT----MPSR 295
L GPPG GK+SL ++A L + L V+ SE+R T MP R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR 164
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 247 LLYGPPGTGKSSLIAAMANQL 267
L YGPPGTGK+S I A+A ++
Sbjct: 50 LFYGPPGTGKTSTIVALAREI 70
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 241 AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275
A KR L GP G GKS++ +A QL + YD D
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 225 LENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK-----------FDIYD 273
+E F ++ + A ++G LYG G GKS L+AAMA++L F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 274 LDLSAVQSNSELRFLLLTMPSRSMLVIEDIDC 305
+D+ SN ++ + + + +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 208 FKTLALD-SELKREITEDLENFMNGKEYYTRI------GRAWKRGYLLYGPPGTGKSSLI 260
K L LD S L ++ L N +E I + R LL GPPGTGK++L
Sbjct: 35 VKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALA 94
Query: 261 AAMANQL 267
A+A +L
Sbjct: 95 LAIAQEL 101
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 208 FKTLALD-SELKREITEDLENFMNGKEYYTRIGRAWK------RGYLLYGPPGTGKSSLI 260
K L LD S L ++ L N +E I K R LL GPPGTGK++L
Sbjct: 21 VKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80
Query: 261 AAMANQL 267
A+A +L
Sbjct: 81 LAIAQEL 87
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 247 LLYGPPGTGKSSLIAAMANQL 267
L YGPPGTGK+S I A+ +L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 243 KRGYLLYGPPGTGKSSLI-AAMANQLKFDIYDLDLS 277
KRG +L GPPG+GK+ ++ A+ N +D+ ++ S
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1083
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 243 KRGYLLYGPPGTGKSSLI-AAMANQLKFDIYDLDLS 277
KRG +L GPPG+GK+ ++ A+ N +D+ ++ S
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1302
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 220 EITEDLENFMNGKEYYTRIGRA---WKRGYLLYGPPGTGKSSLIAAMANQL 267
E+ E L + + G+E+ + + KR LL G PGTGKS L AMA L
Sbjct: 34 EVPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLL 289
LL+GPPG GK++L +A++L ++ A++ +L +L
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL 84
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLL 289
LL+GPPG GK++L +A++L ++ A++ +L +L
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL 84
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLL 289
LL+GPPG GK++L +A++L ++ A++ +L +L
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAIL 84
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303
LL GPPG GK++L +A++L+ +I+ + ++ +L ++ +L I++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303
LL GPPG GK++L +A++L+ +I+ + ++ +L ++ +L I++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303
LL GPPG GK++L +A++L+ +I+ + ++ +L ++ +L I++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303
LL GPPG GK++L +A++L+ +I+ + ++ +L ++ +L I++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 16/84 (19%)
Query: 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIG----RAWKRGYL----LYGPPGTGKSS 258
TF+ LA R E+L ++ G+++ G RA + G+L L+GPPGTGK++
Sbjct: 12 TFQPLA-----ARMRPENLAQYI-GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTT 65
Query: 259 LIAAMANQLKFDIYDLDLSAVQSN 282
L +A D+ +SAV S
Sbjct: 66 LAEVIARYANADVE--RISAVTSG 87
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303
LL GPPG GK++L +A++L+ +I+ + ++ +L ++ +L I++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 247 LLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303
LL GPPG G+++L +A++L+ +I+ + ++ +L ++ +L I++I
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 214 DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273
D + + + ++LE + GK+ +LL G PG+GK+SL +A+ + + ++
Sbjct: 9 DKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 63
Query: 274 LD 275
+D
Sbjct: 64 ID 65
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLI 260
HP+TF LD+ K + L + K +++GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFAL---------------SQKELAIIHGPPGTGKTTTV 222
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLI 260
HP+TF LD+ K + L + K +++GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFAL---------------SQKELAIIHGPPGTGKTTTV 222
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 248 LYGPPGTGKSSLIAAMANQ------LKFDIYDLDLSAVQSNSELRFLLLTMPS 294
L G P GKSSL+AAM F +L V+ + E RF L +P
Sbjct: 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,274,268
Number of Sequences: 62578
Number of extensions: 499781
Number of successful extensions: 1539
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 71
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)