Query 013128
Match_columns 449
No_of_seqs 397 out of 2697
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 9E-101 2E-105 761.9 38.8 428 6-446 2-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 5.4E-41 1.2E-45 324.6 19.5 239 200-444 142-396 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 6.9E-37 1.5E-41 315.3 20.2 212 202-422 427-647 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-36 1.1E-40 305.0 20.5 209 203-420 505-726 (802)
5 KOG0734 AAA+-type ATPase conta 100.0 1E-35 2.2E-40 298.6 17.2 207 204-420 299-514 (752)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 7.6E-34 1.6E-38 289.2 19.3 209 205-421 186-405 (802)
7 KOG0731 AAA+-type ATPase conta 100.0 9.3E-34 2E-38 300.2 20.0 213 203-421 305-527 (774)
8 KOG0727 26S proteasome regulat 100.0 3.4E-33 7.4E-38 258.4 16.5 214 203-422 149-371 (408)
9 KOG0736 Peroxisome assembly fa 100.0 8.7E-33 1.9E-37 287.6 19.5 212 203-420 666-888 (953)
10 PTZ00454 26S protease regulato 100.0 1E-31 2.2E-36 274.0 21.4 233 202-440 138-386 (398)
11 KOG0726 26S proteasome regulat 100.0 8.7E-33 1.9E-37 260.2 10.7 235 200-440 176-426 (440)
12 KOG0728 26S proteasome regulat 100.0 5.8E-32 1.3E-36 250.0 14.4 215 202-422 140-363 (404)
13 KOG0738 AAA+-type ATPase [Post 100.0 1.6E-31 3.5E-36 260.4 17.5 207 205-420 208-425 (491)
14 COG0465 HflB ATP-dependent Zn 100.0 5.3E-31 1.2E-35 275.0 16.7 231 204-441 145-398 (596)
15 KOG0652 26S proteasome regulat 100.0 8.7E-31 1.9E-35 243.5 15.6 230 202-439 164-411 (424)
16 KOG0735 AAA+-type ATPase [Post 100.0 2.1E-30 4.6E-35 267.6 20.0 207 206-421 664-879 (952)
17 PRK03992 proteasome-activating 100.0 3E-30 6.4E-35 263.9 20.6 237 202-444 124-376 (389)
18 TIGR03689 pup_AAA proteasome A 100.0 2.9E-30 6.4E-35 268.4 18.2 183 203-393 176-380 (512)
19 PTZ00361 26 proteosome regulat 100.0 4.6E-30 9.9E-35 263.6 19.2 235 200-440 174-424 (438)
20 TIGR01241 FtsH_fam ATP-depende 100.0 8.8E-30 1.9E-34 268.7 20.4 231 203-440 49-295 (495)
21 COG1223 Predicted ATPase (AAA+ 100.0 6E-30 1.3E-34 237.9 15.6 206 203-422 115-329 (368)
22 TIGR01243 CDC48 AAA family ATP 100.0 2E-29 4.4E-34 277.4 22.1 209 204-420 448-665 (733)
23 CHL00195 ycf46 Ycf46; Provisio 100.0 3.6E-29 7.9E-34 260.5 22.3 205 204-421 223-438 (489)
24 KOG0729 26S proteasome regulat 100.0 1.2E-29 2.5E-34 236.6 14.1 215 200-422 168-393 (435)
25 KOG0739 AAA+-type ATPase [Post 100.0 1E-29 2.3E-34 240.1 11.1 204 203-417 127-340 (439)
26 PF14363 AAA_assoc: Domain ass 100.0 2.6E-29 5.7E-34 206.9 10.8 97 28-125 1-98 (98)
27 CHL00176 ftsH cell division pr 100.0 2.4E-28 5.1E-33 261.8 20.7 212 203-421 177-397 (638)
28 COG0464 SpoVK ATPases of the A 100.0 3.8E-28 8.3E-33 256.5 20.4 228 203-439 236-482 (494)
29 KOG0737 AAA+-type ATPase [Post 100.0 5.7E-28 1.2E-32 235.5 16.8 221 206-440 89-319 (386)
30 KOG0651 26S proteasome regulat 100.0 6.3E-28 1.4E-32 229.5 14.2 210 205-422 128-348 (388)
31 TIGR01242 26Sp45 26S proteasom 100.0 3E-27 6.4E-32 240.4 19.6 215 201-421 114-337 (364)
32 PLN00020 ribulose bisphosphate 100.0 2.6E-27 5.7E-32 233.1 18.2 168 233-409 138-328 (413)
33 CHL00206 ycf2 Ycf2; Provisiona 99.9 4.4E-27 9.6E-32 264.9 17.6 179 230-421 1617-1851(2281)
34 PRK10733 hflB ATP-dependent me 99.9 3.5E-26 7.6E-31 247.3 18.5 210 205-421 148-366 (644)
35 KOG0732 AAA+-type ATPase conta 99.9 6.4E-25 1.4E-29 238.7 17.7 210 203-421 259-483 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 1.8E-24 3.9E-29 238.2 21.4 208 204-420 173-389 (733)
37 KOG0730 AAA+-type ATPase [Post 99.9 3.1E-24 6.6E-29 222.1 16.7 206 204-421 180-395 (693)
38 KOG0741 AAA+-type ATPase [Post 99.9 6.3E-25 1.4E-29 221.0 11.3 214 200-420 210-448 (744)
39 KOG0740 AAA+-type ATPase [Post 99.9 1.9E-24 4.2E-29 217.7 13.5 211 202-422 146-366 (428)
40 KOG0742 AAA+-type ATPase [Post 99.9 1E-20 2.3E-25 185.8 16.2 223 154-393 295-530 (630)
41 PF05496 RuvB_N: Holliday junc 99.8 3.6E-19 7.8E-24 165.4 19.9 191 202-420 17-222 (233)
42 PF00004 AAA: ATPase family as 99.8 4.9E-20 1.1E-24 159.1 11.0 123 246-377 1-132 (132)
43 KOG0744 AAA+-type ATPase [Post 99.8 1.3E-19 2.8E-24 173.8 9.1 179 207-392 140-341 (423)
44 PRK00080 ruvB Holliday junctio 99.8 8.7E-18 1.9E-22 168.6 18.6 191 202-420 18-223 (328)
45 TIGR02881 spore_V_K stage V sp 99.8 1.6E-17 3.5E-22 161.4 16.2 177 208-402 5-202 (261)
46 TIGR00635 ruvB Holliday juncti 99.7 3.9E-17 8.5E-22 162.1 17.8 182 207-416 2-198 (305)
47 PF05673 DUF815: Protein of un 99.7 8E-17 1.7E-21 151.7 18.5 172 200-399 18-215 (249)
48 CHL00181 cbbX CbbX; Provisiona 99.7 4.3E-17 9.3E-22 160.2 17.4 176 209-401 23-219 (287)
49 TIGR02880 cbbX_cfxQ probable R 99.7 3.2E-17 6.9E-22 161.1 14.9 175 210-401 23-218 (284)
50 PRK04195 replication factor C 99.7 1.9E-16 4.2E-21 166.8 18.7 170 194-399 3-181 (482)
51 COG0466 Lon ATP-dependent Lon 99.7 1.9E-16 4E-21 166.1 17.6 200 209-439 323-552 (782)
52 TIGR00763 lon ATP-dependent pr 99.7 3.2E-16 7E-21 173.6 19.3 159 210-392 321-506 (775)
53 COG2255 RuvB Holliday junction 99.7 4.1E-16 8.8E-21 147.9 16.8 192 202-422 19-225 (332)
54 KOG2004 Mitochondrial ATP-depe 99.7 4.1E-16 8.9E-21 162.7 17.4 201 209-440 411-641 (906)
55 COG2256 MGS1 ATPase related to 99.7 1.9E-16 4.2E-21 156.6 13.8 153 203-393 18-178 (436)
56 PRK14962 DNA polymerase III su 99.7 1.2E-15 2.6E-20 159.2 17.0 157 202-395 7-193 (472)
57 PRK12323 DNA polymerase III su 99.7 7E-16 1.5E-20 162.9 14.8 161 202-399 9-204 (700)
58 PRK14956 DNA polymerase III su 99.7 1.4E-15 3E-20 156.9 16.1 159 202-397 11-199 (484)
59 PLN03025 replication factor C 99.7 1.9E-15 4.1E-20 151.1 16.5 163 194-398 2-178 (319)
60 PRK07003 DNA polymerase III su 99.7 2.1E-15 4.6E-20 161.2 17.7 161 201-398 8-198 (830)
61 PHA02544 44 clamp loader, smal 99.7 5E-15 1.1E-19 147.7 19.3 159 192-391 8-173 (316)
62 PRK14960 DNA polymerase III su 99.6 3.1E-15 6.8E-20 158.4 16.3 160 202-398 8-197 (702)
63 PRK14961 DNA polymerase III su 99.6 6.3E-15 1.4E-19 149.9 17.8 160 202-398 9-198 (363)
64 PRK06645 DNA polymerase III su 99.6 8.8E-15 1.9E-19 153.4 17.4 166 192-398 8-207 (507)
65 TIGR02397 dnaX_nterm DNA polym 99.6 1.2E-14 2.6E-19 147.2 17.6 161 202-399 7-197 (355)
66 TIGR02639 ClpA ATP-dependent C 99.6 3.7E-15 8E-20 164.3 14.9 159 204-393 177-360 (731)
67 PRK06893 DNA replication initi 99.6 1.1E-14 2.4E-19 138.9 15.3 170 200-400 7-183 (229)
68 PRK14964 DNA polymerase III su 99.6 1E-14 2.2E-19 151.9 16.3 160 202-398 6-195 (491)
69 PRK14958 DNA polymerase III su 99.6 8.2E-15 1.8E-19 154.5 15.7 159 202-397 9-197 (509)
70 PRK13342 recombination factor 99.6 1.2E-14 2.7E-19 150.2 16.7 151 202-393 5-166 (413)
71 COG2607 Predicted ATPase (AAA+ 99.6 5.3E-14 1.1E-18 130.6 18.1 174 200-399 51-247 (287)
72 PRK08691 DNA polymerase III su 99.6 1.7E-14 3.6E-19 154.1 15.8 160 202-398 9-198 (709)
73 PRK14949 DNA polymerase III su 99.6 2.3E-14 5E-19 155.9 16.9 159 202-397 9-197 (944)
74 PRK14951 DNA polymerase III su 99.6 2.5E-14 5.3E-19 152.9 16.7 161 202-399 9-204 (618)
75 PRK05563 DNA polymerase III su 99.6 3.9E-14 8.5E-19 151.2 18.3 160 202-398 9-198 (559)
76 TIGR02902 spore_lonB ATP-depen 99.6 1.8E-14 3.9E-19 153.0 15.3 189 194-420 54-305 (531)
77 PRK14963 DNA polymerase III su 99.6 4.3E-14 9.3E-19 148.7 17.9 160 202-398 7-195 (504)
78 PRK07994 DNA polymerase III su 99.6 3.2E-14 6.8E-19 152.4 17.0 157 202-395 9-195 (647)
79 PRK07764 DNA polymerase III su 99.6 3E-14 6.5E-19 157.0 16.7 159 202-397 8-198 (824)
80 KOG0735 AAA+-type ATPase [Post 99.6 1.7E-14 3.6E-19 150.6 13.6 192 209-416 408-613 (952)
81 KOG0989 Replication factor C, 99.6 1.1E-14 2.4E-19 139.6 11.2 165 193-399 24-209 (346)
82 PRK05896 DNA polymerase III su 99.6 3.2E-14 6.9E-19 150.5 15.3 157 202-395 9-195 (605)
83 PRK14970 DNA polymerase III su 99.6 8.4E-14 1.8E-18 141.9 17.9 160 202-398 10-187 (367)
84 TIGR03345 VI_ClpV1 type VI sec 99.6 1.8E-14 3.9E-19 160.3 13.4 158 203-392 181-364 (852)
85 PRK07133 DNA polymerase III su 99.6 4.7E-14 1E-18 152.0 16.0 157 202-395 11-194 (725)
86 PRK14952 DNA polymerase III su 99.6 6.8E-14 1.5E-18 149.0 17.0 162 202-400 6-199 (584)
87 TIGR03420 DnaA_homol_Hda DnaA 99.6 4.9E-14 1.1E-18 133.6 14.1 168 200-401 6-182 (226)
88 PRK14969 DNA polymerase III su 99.6 4.4E-14 9.6E-19 149.8 15.3 159 202-397 9-197 (527)
89 PRK14957 DNA polymerase III su 99.6 8.7E-14 1.9E-18 146.9 17.2 159 202-397 9-197 (546)
90 PRK10787 DNA-binding ATP-depen 99.6 9.7E-14 2.1E-18 153.0 17.7 158 210-392 323-507 (784)
91 PRK12402 replication factor C 99.6 8.7E-14 1.9E-18 139.7 15.9 163 194-398 4-204 (337)
92 PRK14959 DNA polymerase III su 99.5 6.5E-14 1.4E-18 148.9 15.3 160 202-398 9-198 (624)
93 PRK06305 DNA polymerase III su 99.5 3.8E-13 8.3E-18 140.1 20.4 157 202-395 10-197 (451)
94 TIGR02640 gas_vesic_GvpN gas v 99.5 1.4E-13 3E-18 133.9 15.4 144 218-393 7-200 (262)
95 PRK10865 protein disaggregatio 99.5 3.7E-14 8.1E-19 158.2 12.9 159 203-393 172-356 (857)
96 PRK14965 DNA polymerase III su 99.5 8.8E-14 1.9E-18 149.1 15.3 160 202-398 9-198 (576)
97 PRK07940 DNA polymerase III su 99.5 4.2E-13 9.1E-18 137.2 19.0 155 207-389 3-187 (394)
98 KOG0736 Peroxisome assembly fa 99.5 2E-13 4.3E-18 143.9 16.5 170 240-420 428-606 (953)
99 PRK14953 DNA polymerase III su 99.5 2.5E-13 5.5E-18 142.5 17.2 160 202-398 9-198 (486)
100 PRK14955 DNA polymerase III su 99.5 1.7E-13 3.6E-18 141.0 14.9 157 202-395 9-203 (397)
101 PRK09111 DNA polymerase III su 99.5 2.7E-13 5.8E-18 145.1 16.8 161 202-399 17-212 (598)
102 TIGR03346 chaperone_ClpB ATP-d 99.5 6.8E-14 1.5E-18 156.5 12.8 159 203-393 167-351 (852)
103 PRK08451 DNA polymerase III su 99.5 4.8E-13 1E-17 140.7 18.0 160 202-398 7-196 (535)
104 PRK14948 DNA polymerase III su 99.5 4.8E-13 1E-17 144.0 18.4 159 202-397 9-199 (620)
105 PRK06647 DNA polymerase III su 99.5 3.8E-13 8.3E-18 143.2 17.2 159 202-397 9-197 (563)
106 PRK05342 clpX ATP-dependent pr 99.5 2.4E-13 5.1E-18 139.7 14.9 177 208-390 69-324 (412)
107 PRK00440 rfc replication facto 99.5 7E-13 1.5E-17 132.1 17.8 164 193-398 5-181 (319)
108 TIGR00362 DnaA chromosomal rep 99.5 2.3E-13 5.1E-18 140.5 14.8 190 202-420 103-311 (405)
109 PRK08084 DNA replication initi 99.5 5.6E-13 1.2E-17 127.6 16.1 161 200-392 13-181 (235)
110 PRK13341 recombination factor 99.5 1.6E-13 3.5E-18 149.6 13.8 153 202-392 21-182 (725)
111 PRK14954 DNA polymerase III su 99.5 7.1E-13 1.5E-17 142.1 18.0 158 202-396 9-204 (620)
112 PRK08727 hypothetical protein; 99.5 7.9E-13 1.7E-17 126.4 16.4 160 200-394 10-178 (233)
113 PRK08903 DnaA regulatory inact 99.5 7.9E-13 1.7E-17 125.7 16.3 163 200-400 9-179 (227)
114 PRK11034 clpA ATP-dependent Cl 99.5 1.5E-13 3.3E-18 150.4 12.9 155 207-392 184-363 (758)
115 PRK14950 DNA polymerase III su 99.5 6.1E-13 1.3E-17 143.2 17.1 160 202-398 9-199 (585)
116 PRK11034 clpA ATP-dependent Cl 99.5 7.9E-13 1.7E-17 144.9 18.1 159 210-392 459-667 (758)
117 TIGR02928 orc1/cdc6 family rep 99.5 3.7E-12 8E-17 129.5 21.2 158 208-392 14-213 (365)
118 PRK00149 dnaA chromosomal repl 99.5 3.4E-13 7.3E-18 141.1 13.8 191 202-420 115-323 (450)
119 PRK14971 DNA polymerase III su 99.5 8.4E-13 1.8E-17 142.1 17.1 161 202-399 10-201 (614)
120 TIGR00382 clpX endopeptidase C 99.5 1.4E-12 3.1E-17 133.4 16.7 175 210-390 78-330 (413)
121 COG2812 DnaX DNA polymerase II 99.5 1.3E-12 2.8E-17 136.0 15.8 162 202-400 9-200 (515)
122 CHL00095 clpC Clp protease ATP 99.4 6.5E-13 1.4E-17 148.3 14.2 153 207-391 177-354 (821)
123 PRK05642 DNA replication initi 99.4 2.8E-12 6.1E-17 122.6 15.0 161 200-391 10-179 (234)
124 TIGR01650 PD_CobS cobaltochela 99.4 1.1E-12 2.4E-17 129.5 12.4 129 243-391 64-233 (327)
125 TIGR02639 ClpA ATP-dependent C 99.4 5.1E-12 1.1E-16 139.5 18.4 155 209-392 454-663 (731)
126 PRK00411 cdc6 cell division co 99.4 1.6E-11 3.5E-16 126.2 20.9 158 207-392 28-221 (394)
127 PRK14086 dnaA chromosomal repl 99.4 2.6E-12 5.6E-17 136.2 14.7 191 202-421 281-490 (617)
128 PF00308 Bac_DnaA: Bacterial d 99.4 3.4E-12 7.3E-17 120.9 13.9 185 204-416 3-205 (219)
129 KOG2028 ATPase related to the 99.4 1.4E-12 3E-17 127.5 11.2 152 202-391 131-294 (554)
130 cd00009 AAA The AAA+ (ATPases 99.4 4.2E-12 9E-17 110.1 13.3 115 243-377 19-151 (151)
131 PRK12422 chromosomal replicati 99.4 3.2E-12 7E-17 132.8 14.1 152 244-416 142-310 (445)
132 PTZ00112 origin recognition co 99.4 1.2E-11 2.6E-16 133.4 18.6 156 209-393 755-951 (1164)
133 TIGR02903 spore_lon_C ATP-depe 99.4 7.6E-12 1.6E-16 135.1 16.8 178 202-413 147-388 (615)
134 PRK14088 dnaA chromosomal repl 99.4 4.8E-12 1E-16 131.7 13.4 190 202-420 98-306 (440)
135 PF07728 AAA_5: AAA domain (dy 99.4 7.5E-13 1.6E-17 116.0 5.6 105 245-369 1-139 (139)
136 COG0714 MoxR-like ATPases [Gen 99.3 1.2E-11 2.7E-16 124.2 14.6 130 243-392 43-204 (329)
137 PRK13407 bchI magnesium chelat 99.3 8.5E-12 1.8E-16 124.7 13.2 157 203-392 2-217 (334)
138 PRK06620 hypothetical protein; 99.3 2.5E-11 5.4E-16 114.5 15.6 155 201-398 8-167 (214)
139 PHA02244 ATPase-like protein 99.3 1.8E-11 3.8E-16 122.4 14.6 116 244-381 120-264 (383)
140 PRK14087 dnaA chromosomal repl 99.3 3.4E-11 7.3E-16 125.6 16.2 188 205-421 111-321 (450)
141 KOG1969 DNA replication checkp 99.3 7.1E-11 1.5E-15 124.4 17.6 178 194-395 260-485 (877)
142 PRK07471 DNA polymerase III su 99.3 1.5E-10 3.2E-15 117.5 19.3 154 202-392 12-214 (365)
143 PRK05564 DNA polymerase III su 99.3 2.2E-10 4.8E-15 114.3 20.2 148 207-391 2-165 (313)
144 CHL00081 chlI Mg-protoporyphyr 99.3 1.6E-11 3.4E-16 123.2 11.8 156 204-392 12-233 (350)
145 PRK09112 DNA polymerase III su 99.3 1.6E-10 3.5E-15 116.6 18.9 151 203-390 17-212 (351)
146 PRK10865 protein disaggregatio 99.3 8.5E-11 1.9E-15 131.4 17.8 161 208-392 567-780 (857)
147 PRK09087 hypothetical protein; 99.3 4.1E-11 8.9E-16 113.9 12.2 174 200-416 12-192 (226)
148 TIGR03345 VI_ClpV1 type VI sec 99.3 9.2E-11 2E-15 130.9 16.9 157 209-392 566-781 (852)
149 TIGR03346 chaperone_ClpB ATP-d 99.3 2E-10 4.3E-15 128.8 19.0 160 209-392 565-777 (852)
150 PRK05201 hslU ATP-dependent pr 99.2 3.4E-11 7.5E-16 122.1 11.0 70 210-279 16-86 (443)
151 COG0542 clpA ATP-binding subun 99.2 2E-10 4.4E-15 124.2 17.0 160 209-392 491-706 (786)
152 TIGR02030 BchI-ChlI magnesium 99.2 1.2E-10 2.6E-15 116.7 14.0 153 207-392 2-220 (337)
153 TIGR00390 hslU ATP-dependent p 99.2 6.2E-11 1.3E-15 120.2 11.7 70 210-279 13-83 (441)
154 CHL00095 clpC Clp protease ATP 99.2 2.7E-10 6E-15 127.3 18.0 159 209-392 509-733 (821)
155 TIGR00678 holB DNA polymerase 99.2 2.1E-10 4.5E-15 105.9 14.2 123 243-390 14-167 (188)
156 COG0464 SpoVK ATPases of the A 99.2 1.3E-10 2.9E-15 123.1 14.6 180 230-420 5-193 (494)
157 COG1474 CDC6 Cdc6-related prot 99.2 5.8E-10 1.2E-14 113.1 18.2 154 209-392 17-204 (366)
158 TIGR00602 rad24 checkpoint pro 99.2 1.1E-10 2.4E-15 125.3 13.6 205 193-436 72-327 (637)
159 PRK11331 5-methylcytosine-spec 99.2 3.2E-10 6.8E-15 116.3 14.2 135 208-377 174-357 (459)
160 PRK07952 DNA replication prote 99.2 1.2E-10 2.7E-15 111.6 10.4 155 173-356 39-205 (244)
161 PF07724 AAA_2: AAA domain (Cd 99.2 8.9E-11 1.9E-15 106.8 8.5 109 243-358 3-132 (171)
162 smart00763 AAA_PrkA PrkA AAA d 99.2 6.6E-10 1.4E-14 111.1 15.3 63 207-276 48-118 (361)
163 PF07726 AAA_3: ATPase family 99.2 4.2E-11 9.1E-16 102.2 5.6 106 245-370 1-130 (131)
164 PRK08116 hypothetical protein; 99.1 1.9E-10 4.2E-15 112.1 10.5 149 206-380 82-251 (268)
165 PRK07399 DNA polymerase III su 99.1 1.8E-09 3.9E-14 107.6 17.0 148 207-392 2-196 (314)
166 PRK08058 DNA polymerase III su 99.1 2.6E-09 5.6E-14 107.3 17.6 146 207-389 3-180 (329)
167 PRK05707 DNA polymerase III su 99.1 3.5E-09 7.6E-14 106.1 17.3 123 243-390 22-177 (328)
168 COG0470 HolB ATPase involved i 99.1 6.2E-09 1.3E-13 103.8 19.1 142 210-387 2-177 (325)
169 PRK13531 regulatory ATPase Rav 99.1 6.1E-10 1.3E-14 115.1 11.8 128 243-390 39-193 (498)
170 smart00382 AAA ATPases associa 99.1 1.1E-09 2.4E-14 93.7 10.9 118 243-378 2-147 (148)
171 PRK08181 transposase; Validate 99.1 6.3E-10 1.4E-14 108.2 10.0 124 164-307 42-180 (269)
172 smart00350 MCM minichromosome 99.1 1.3E-09 2.9E-14 115.7 13.2 160 210-392 204-401 (509)
173 TIGR02442 Cob-chelat-sub cobal 99.1 7.5E-10 1.6E-14 120.3 11.1 153 207-392 2-215 (633)
174 COG0542 clpA ATP-binding subun 99.0 1.3E-09 2.7E-14 118.1 12.0 201 206-443 167-396 (786)
175 KOG0991 Replication factor C, 99.0 1.6E-09 3.4E-14 100.6 10.9 187 200-437 18-219 (333)
176 PRK11608 pspF phage shock prot 99.0 4.4E-09 9.6E-14 105.5 15.0 154 207-392 4-195 (326)
177 PRK06964 DNA polymerase III su 99.0 1.9E-08 4.2E-13 101.0 18.4 124 242-390 20-203 (342)
178 PRK12377 putative replication 99.0 2.2E-09 4.7E-14 103.2 11.1 136 204-365 69-220 (248)
179 TIGR01817 nifA Nif-specific re 99.0 9.2E-09 2E-13 110.1 16.2 157 204-392 191-385 (534)
180 PF13177 DNA_pol3_delta2: DNA 99.0 8.7E-09 1.9E-13 93.0 13.3 111 243-378 19-161 (162)
181 TIGR02974 phageshock_pspF psp 99.0 1.4E-08 3.1E-13 101.9 16.1 168 212-411 2-215 (329)
182 PRK08939 primosomal protein Dn 99.0 2.7E-09 5.9E-14 105.8 10.8 97 205-306 123-229 (306)
183 PF03215 Rad17: Rad17 cell cyc 99.0 9.1E-09 2E-13 108.7 15.2 210 191-438 5-269 (519)
184 PF00158 Sigma54_activat: Sigm 99.0 5.3E-09 1.1E-13 94.9 11.7 116 211-355 1-143 (168)
185 COG0593 DnaA ATPase involved i 99.0 6.9E-09 1.5E-13 105.5 13.4 190 202-420 80-287 (408)
186 PF01078 Mg_chelatase: Magnesi 99.0 2.7E-09 5.9E-14 98.9 9.5 139 208-381 2-205 (206)
187 PRK06526 transposase; Provisio 99.0 1.4E-09 3.1E-14 105.1 7.9 126 164-307 35-172 (254)
188 PRK11388 DNA-binding transcrip 99.0 1.2E-08 2.7E-13 111.4 16.1 154 207-392 323-511 (638)
189 PRK04132 replication factor C 98.9 1.3E-08 2.8E-13 112.2 15.3 127 246-397 567-708 (846)
190 KOG0741 AAA+-type ATPase [Post 98.9 9.5E-09 2E-13 105.1 13.0 136 243-389 538-684 (744)
191 PF06068 TIP49: TIP49 C-termin 98.9 3.4E-08 7.3E-13 98.3 16.0 64 208-279 23-88 (398)
192 COG1219 ClpX ATP-dependent pro 98.9 5.7E-09 1.2E-13 101.0 10.1 95 243-341 97-205 (408)
193 PF12775 AAA_7: P-loop contain 98.9 4.9E-09 1.1E-13 102.4 9.6 134 243-392 33-194 (272)
194 TIGR02031 BchD-ChlD magnesium 98.9 1E-08 2.2E-13 110.5 12.6 128 244-391 17-174 (589)
195 PRK15424 propionate catabolism 98.9 4.5E-08 9.7E-13 103.9 15.6 156 206-393 216-418 (538)
196 COG1224 TIP49 DNA helicase TIP 98.9 1.2E-07 2.5E-12 93.3 16.9 64 208-279 38-103 (450)
197 PRK06090 DNA polymerase III su 98.8 1.2E-07 2.7E-12 94.3 17.1 122 243-389 25-178 (319)
198 PRK10820 DNA-binding transcrip 98.8 1.2E-07 2.5E-12 101.1 18.1 177 204-411 199-419 (520)
199 PRK06871 DNA polymerase III su 98.8 1.8E-07 3.9E-12 93.4 18.1 123 243-390 24-178 (325)
200 TIGR02329 propionate_PrpR prop 98.8 5.5E-08 1.2E-12 103.2 15.1 158 204-393 207-403 (526)
201 PRK07993 DNA polymerase III su 98.8 8.9E-08 1.9E-12 96.2 15.2 122 243-389 24-178 (334)
202 COG1484 DnaC DNA replication p 98.8 1.9E-08 4E-13 97.4 9.9 95 204-306 74-179 (254)
203 COG1221 PspF Transcriptional r 98.8 4.8E-08 1E-12 99.2 12.3 203 161-393 21-266 (403)
204 PRK09183 transposase/IS protei 98.8 1.5E-08 3.2E-13 98.4 8.1 64 243-306 102-176 (259)
205 PRK08769 DNA polymerase III su 98.8 2.8E-07 6E-12 91.8 16.9 122 243-389 26-183 (319)
206 PF01695 IstB_IS21: IstB-like 98.8 4.4E-09 9.5E-14 96.4 3.7 64 243-306 47-120 (178)
207 PRK06835 DNA replication prote 98.8 3.5E-08 7.5E-13 98.8 10.0 103 244-365 184-303 (329)
208 PRK15429 formate hydrogenlyase 98.8 1.4E-07 2.9E-12 104.1 15.6 157 205-392 372-565 (686)
209 PRK05022 anaerobic nitric oxid 98.8 2.2E-07 4.9E-12 98.8 16.7 154 207-392 185-376 (509)
210 KOG0745 Putative ATP-dependent 98.8 3.1E-08 6.7E-13 99.4 9.3 130 243-378 226-386 (564)
211 PRK08699 DNA polymerase III su 98.7 5.6E-08 1.2E-12 97.3 11.0 121 243-388 21-182 (325)
212 PRK06921 hypothetical protein; 98.7 4.3E-08 9.3E-13 95.5 9.8 63 243-305 117-188 (266)
213 PF13173 AAA_14: AAA domain 98.7 5E-08 1.1E-12 84.3 8.9 63 244-306 3-73 (128)
214 PF14532 Sigma54_activ_2: Sigm 98.7 3.2E-08 7E-13 86.7 7.3 126 213-377 2-137 (138)
215 TIGR00368 Mg chelatase-related 98.6 1.3E-07 2.8E-12 99.8 10.7 143 205-382 188-395 (499)
216 COG1220 HslU ATP-dependent pro 98.6 2.9E-07 6.3E-12 89.9 12.0 70 210-279 16-86 (444)
217 KOG0990 Replication factor C, 98.6 1.4E-07 3.1E-12 91.6 9.4 164 193-398 29-210 (360)
218 PF00910 RNA_helicase: RNA hel 98.6 6.1E-08 1.3E-12 81.2 6.0 62 246-307 1-62 (107)
219 TIGR03015 pepcterm_ATPase puta 98.6 1.9E-06 4.2E-11 83.6 17.2 176 214-420 24-239 (269)
220 PF01637 Arch_ATPase: Archaeal 98.6 6.3E-07 1.4E-11 84.3 13.0 156 243-417 20-232 (234)
221 PRK09862 putative ATP-dependen 98.6 1.8E-07 3.9E-12 98.3 9.7 119 243-381 210-391 (506)
222 PF12774 AAA_6: Hydrolytic ATP 98.6 6.3E-07 1.4E-11 85.4 12.5 173 243-439 32-222 (231)
223 COG1239 ChlI Mg-chelatase subu 98.6 3.8E-07 8.3E-12 92.0 10.7 156 205-393 13-234 (423)
224 PRK05818 DNA polymerase III su 98.6 2.2E-06 4.7E-11 82.4 15.4 113 241-378 5-147 (261)
225 PRK10923 glnG nitrogen regulat 98.6 2.3E-06 4.9E-11 90.2 17.0 153 208-392 137-327 (469)
226 KOG1942 DNA helicase, TBP-inte 98.5 3.4E-06 7.5E-11 81.1 15.4 52 209-268 38-89 (456)
227 PTZ00111 DNA replication licen 98.5 6.1E-07 1.3E-11 98.9 11.9 129 244-392 493-658 (915)
228 KOG1514 Origin recognition com 98.5 4E-06 8.7E-11 89.0 17.1 195 210-443 397-631 (767)
229 KOG2035 Replication factor C, 98.5 1.6E-06 3.4E-11 82.9 12.5 163 202-402 6-210 (351)
230 TIGR02915 PEP_resp_reg putativ 98.5 3.4E-06 7.4E-11 88.2 16.2 154 207-392 137-328 (445)
231 TIGR00764 lon_rel lon-related 98.5 6.3E-06 1.4E-10 89.3 18.1 50 206-270 15-64 (608)
232 COG3829 RocR Transcriptional r 98.5 4.1E-06 9E-11 87.0 15.6 126 202-356 238-391 (560)
233 PF05729 NACHT: NACHT domain 98.5 1.3E-06 2.8E-11 77.8 10.3 134 244-393 1-165 (166)
234 PRK11361 acetoacetate metaboli 98.4 2.2E-06 4.8E-11 89.8 13.4 154 208-392 142-332 (457)
235 PRK05917 DNA polymerase III su 98.4 1E-05 2.2E-10 79.4 16.5 111 243-378 19-154 (290)
236 KOG1970 Checkpoint RAD17-RFC c 98.4 6.9E-06 1.5E-10 85.1 15.8 74 192-275 69-142 (634)
237 TIGR01818 ntrC nitrogen regula 98.4 5.5E-06 1.2E-10 87.0 15.6 153 209-393 134-324 (463)
238 KOG1968 Replication factor C, 98.4 1.6E-06 3.5E-11 96.1 11.8 188 193-407 308-519 (871)
239 PF13401 AAA_22: AAA domain; P 98.4 8E-07 1.7E-11 76.4 7.1 38 243-280 4-49 (131)
240 PRK07132 DNA polymerase III su 98.4 1.7E-05 3.8E-10 78.4 16.9 121 243-389 18-160 (299)
241 PRK07276 DNA polymerase III su 98.4 3.4E-05 7.4E-10 75.8 18.8 118 243-388 24-172 (290)
242 PF03969 AFG1_ATPase: AFG1-lik 98.4 8.8E-07 1.9E-11 89.9 7.8 96 240-356 59-168 (362)
243 KOG2227 Pre-initiation complex 98.3 9.4E-06 2E-10 82.7 14.4 160 208-395 149-342 (529)
244 COG0606 Predicted ATPase with 98.3 1.3E-06 2.7E-11 89.6 7.6 48 205-267 175-222 (490)
245 PRK15115 response regulator Gl 98.3 8.9E-06 1.9E-10 85.0 14.3 127 244-392 158-323 (444)
246 KOG1051 Chaperone HSP104 and r 98.3 3.1E-06 6.7E-11 93.4 10.9 124 209-356 562-711 (898)
247 PF00931 NB-ARC: NB-ARC domain 98.3 7.9E-06 1.7E-10 80.0 12.8 143 243-413 19-196 (287)
248 PF05621 TniB: Bacterial TniB 98.3 8.8E-06 1.9E-10 79.6 12.0 179 219-421 43-263 (302)
249 PLN03210 Resistant to P. syrin 98.3 2.7E-05 5.8E-10 90.8 18.1 154 202-395 177-368 (1153)
250 COG5271 MDN1 AAA ATPase contai 98.2 8.7E-06 1.9E-10 92.4 12.6 130 243-394 1543-1706(4600)
251 COG2204 AtoC Response regulato 98.2 3E-05 6.6E-10 80.3 15.7 155 207-393 139-331 (464)
252 KOG0478 DNA replication licens 98.2 8.1E-06 1.8E-10 86.3 11.3 161 210-392 430-627 (804)
253 PRK10365 transcriptional regul 98.2 1.8E-05 3.8E-10 82.6 13.3 150 211-393 141-329 (441)
254 PRK13406 bchD magnesium chelat 98.2 1.5E-05 3.2E-10 85.7 12.7 120 244-383 26-174 (584)
255 PHA02774 E1; Provisional 98.2 9.5E-06 2E-10 85.6 10.5 58 239-303 430-488 (613)
256 cd01120 RecA-like_NTPases RecA 98.2 1.6E-05 3.5E-10 70.2 10.4 63 246-308 2-99 (165)
257 PHA02624 large T antigen; Prov 98.1 6.4E-06 1.4E-10 87.2 8.7 125 239-377 427-561 (647)
258 PHA00729 NTP-binding motif con 98.1 6.1E-06 1.3E-10 77.9 5.9 133 244-393 18-167 (226)
259 PF00493 MCM: MCM2/3/5 family 98.0 1.8E-06 3.8E-11 86.9 2.0 163 210-393 25-223 (331)
260 PF05707 Zot: Zonular occluden 98.0 1.5E-05 3.3E-10 73.9 7.5 114 246-378 3-146 (193)
261 PRK15455 PrkA family serine pr 98.0 8.6E-06 1.9E-10 85.9 6.2 66 204-276 71-137 (644)
262 TIGR01618 phage_P_loop phage n 98.0 1.7E-05 3.7E-10 74.9 7.4 23 243-265 12-34 (220)
263 PF13207 AAA_17: AAA domain; P 98.0 5.3E-06 1.2E-10 70.4 3.6 31 246-276 2-32 (121)
264 KOG2228 Origin recognition com 97.9 5.1E-05 1.1E-09 74.6 10.0 155 210-393 25-221 (408)
265 TIGR02237 recomb_radB DNA repa 97.9 6.6E-05 1.4E-09 70.2 10.3 40 239-278 8-50 (209)
266 KOG2170 ATPase of the AAA+ sup 97.9 3.6E-05 7.7E-10 74.6 8.4 92 210-307 83-191 (344)
267 PF10443 RNA12: RNA12 protein; 97.9 0.00056 1.2E-08 69.9 16.6 82 357-440 197-302 (431)
268 KOG2680 DNA helicase TIP49, TB 97.9 0.00013 2.9E-09 70.6 11.0 58 347-407 318-387 (454)
269 COG1373 Predicted ATPase (AAA+ 97.8 0.00014 3.1E-09 75.0 11.9 125 245-394 39-183 (398)
270 PRK00131 aroK shikimate kinase 97.8 1.7E-05 3.8E-10 71.4 4.4 34 242-275 3-36 (175)
271 TIGR02688 conserved hypothetic 97.8 0.00024 5.3E-09 72.7 13.0 64 243-307 209-273 (449)
272 COG1618 Predicted nucleotide k 97.8 0.0001 2.3E-09 65.3 8.5 24 244-267 6-29 (179)
273 PF14516 AAA_35: AAA-like doma 97.8 0.0005 1.1E-08 69.3 14.5 134 243-392 31-215 (331)
274 PRK14722 flhF flagellar biosyn 97.8 6.8E-05 1.5E-09 76.2 7.8 103 243-363 137-266 (374)
275 KOG0480 DNA replication licens 97.7 0.00023 5E-09 75.1 11.2 163 208-393 344-544 (764)
276 PRK08118 topology modulation p 97.7 2.7E-05 5.8E-10 70.6 3.8 32 245-276 3-34 (167)
277 PF06309 Torsin: Torsin; Inte 97.7 6.1E-05 1.3E-09 64.4 5.6 53 209-267 25-77 (127)
278 COG3604 FhlA Transcriptional r 97.7 0.00021 4.7E-09 73.7 10.5 91 206-307 220-330 (550)
279 PRK14737 gmk guanylate kinase; 97.7 0.00013 2.8E-09 67.3 8.0 27 242-268 3-29 (186)
280 COG1241 MCM2 Predicted ATPase 97.7 8.3E-05 1.8E-09 80.4 7.6 156 210-389 287-481 (682)
281 PF08740 BCS1_N: BCS1 N termin 97.7 0.0028 6E-08 58.3 16.6 137 52-211 27-187 (187)
282 PRK07261 topology modulation p 97.7 0.00017 3.7E-09 65.6 8.2 31 246-276 3-33 (171)
283 PRK09361 radB DNA repair and r 97.7 0.00021 4.6E-09 67.6 9.2 39 239-277 19-60 (225)
284 cd01394 radB RadB. The archaea 97.7 0.00036 7.9E-09 65.7 10.7 38 239-276 15-55 (218)
285 PRK12723 flagellar biosynthesi 97.7 0.00065 1.4E-08 69.6 13.0 65 242-306 173-266 (388)
286 COG3283 TyrR Transcriptional r 97.6 0.00053 1.1E-08 68.1 11.6 128 200-356 195-344 (511)
287 TIGR02012 tigrfam_recA protein 97.6 0.00025 5.4E-09 70.7 9.6 70 239-308 51-147 (321)
288 cd01124 KaiC KaiC is a circadi 97.6 0.00033 7.1E-09 63.9 9.6 30 246-275 2-34 (187)
289 PF05272 VirE: Virulence-assoc 97.6 0.00028 6E-09 65.7 9.1 110 239-377 48-169 (198)
290 PRK13947 shikimate kinase; Pro 97.6 5.3E-05 1.1E-09 68.4 4.2 32 245-276 3-34 (171)
291 PRK06067 flagellar accessory p 97.6 0.00043 9.2E-09 66.1 10.5 38 239-276 21-61 (234)
292 PRK03839 putative kinase; Prov 97.6 5E-05 1.1E-09 69.4 3.9 30 246-275 3-32 (180)
293 PF13191 AAA_16: AAA ATPase do 97.6 3.8E-05 8.1E-10 69.8 3.0 59 211-279 2-63 (185)
294 cd00464 SK Shikimate kinase (S 97.6 6E-05 1.3E-09 66.6 4.1 31 245-275 1-31 (154)
295 COG5245 DYN1 Dynein, heavy cha 97.6 0.00021 4.6E-09 81.1 9.0 140 241-393 1492-1660(3164)
296 cd00983 recA RecA is a bacter 97.6 0.0003 6.5E-09 70.2 9.3 70 239-308 51-147 (325)
297 PF13604 AAA_30: AAA domain; P 97.6 0.00091 2E-08 62.2 12.0 64 244-307 19-106 (196)
298 cd01393 recA_like RecA is a b 97.6 0.0004 8.7E-09 65.6 9.8 40 239-278 15-63 (226)
299 PRK00625 shikimate kinase; Pro 97.6 6.4E-05 1.4E-09 68.5 4.0 31 245-275 2-32 (173)
300 PRK05800 cobU adenosylcobinami 97.6 0.00066 1.4E-08 61.7 10.5 64 245-308 3-90 (170)
301 PF13671 AAA_33: AAA domain; P 97.6 4.3E-05 9.2E-10 66.7 2.6 28 246-273 2-29 (143)
302 PRK04040 adenylate kinase; Pro 97.6 0.00045 9.7E-09 63.8 9.4 29 244-272 3-33 (188)
303 COG1485 Predicted ATPase [Gene 97.6 0.00029 6.3E-09 69.9 8.5 96 240-356 62-171 (367)
304 PRK13949 shikimate kinase; Pro 97.6 6.9E-05 1.5E-09 68.0 3.9 31 245-275 3-33 (169)
305 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00047 1E-08 65.6 9.7 40 239-278 15-63 (235)
306 PRK04841 transcriptional regul 97.5 0.0054 1.2E-07 69.8 19.4 151 243-420 32-226 (903)
307 COG0703 AroK Shikimate kinase 97.5 8.1E-05 1.8E-09 67.2 3.5 32 244-275 3-34 (172)
308 cd00544 CobU Adenosylcobinamid 97.5 0.0012 2.5E-08 60.0 11.0 63 246-308 2-87 (169)
309 cd03283 ABC_MutS-like MutS-lik 97.5 0.00074 1.6E-08 63.0 9.8 63 243-305 25-116 (199)
310 PRK13948 shikimate kinase; Pro 97.5 0.00013 2.8E-09 67.0 4.6 34 242-275 9-42 (182)
311 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00063 1.4E-08 64.1 9.1 104 244-363 30-161 (213)
312 PRK05973 replicative DNA helic 97.4 0.00075 1.6E-08 64.5 9.6 37 239-275 60-99 (237)
313 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00012 2.7E-09 66.7 4.0 29 246-274 2-30 (183)
314 PTZ00202 tuzin; Provisional 97.4 0.014 3E-07 60.3 18.8 63 205-277 258-320 (550)
315 PRK06217 hypothetical protein; 97.4 0.00014 2.9E-09 66.8 4.2 31 245-275 3-33 (183)
316 cd02021 GntK Gluconate kinase 97.4 0.00013 2.9E-09 64.3 3.9 28 246-273 2-29 (150)
317 PRK08154 anaerobic benzoate ca 97.4 0.00027 5.8E-09 70.5 6.3 58 213-275 108-165 (309)
318 PRK00771 signal recognition pa 97.4 0.0015 3.2E-08 68.1 12.0 63 216-279 69-134 (437)
319 PRK14532 adenylate kinase; Pro 97.4 0.00014 3.1E-09 66.8 4.0 30 245-274 2-31 (188)
320 TIGR03499 FlhF flagellar biosy 97.4 0.00088 1.9E-08 65.9 9.8 36 243-278 194-234 (282)
321 PRK12608 transcription termina 97.4 0.0013 2.9E-08 66.5 11.1 24 245-268 135-158 (380)
322 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00048 1E-08 68.9 7.8 65 208-279 59-125 (358)
323 KOG3347 Predicted nucleotide k 97.4 0.00015 3.2E-09 63.4 3.6 42 243-286 7-48 (176)
324 PF06431 Polyoma_lg_T_C: Polyo 97.4 0.00078 1.7E-08 67.2 9.1 138 218-377 138-285 (417)
325 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.4E-09 64.9 3.8 32 246-279 1-32 (163)
326 PRK08533 flagellar accessory p 97.4 0.001 2.2E-08 63.5 9.5 37 239-275 20-59 (230)
327 cd02020 CMPK Cytidine monophos 97.4 0.00017 3.7E-09 63.0 3.8 30 246-275 2-31 (147)
328 PRK14531 adenylate kinase; Pro 97.4 0.00019 4E-09 65.9 4.2 31 244-274 3-33 (183)
329 PF00437 T2SE: Type II/IV secr 97.4 0.00061 1.3E-08 66.4 8.0 91 204-305 99-208 (270)
330 PRK13765 ATP-dependent proteas 97.4 0.0004 8.7E-09 75.4 7.3 52 203-269 25-76 (637)
331 cd01428 ADK Adenylate kinase ( 97.3 0.00018 3.9E-09 66.2 4.0 29 246-274 2-30 (194)
332 PRK05057 aroK shikimate kinase 97.3 0.00021 4.5E-09 65.1 4.3 34 243-276 4-37 (172)
333 PRK13946 shikimate kinase; Pro 97.3 0.00018 3.9E-09 66.1 3.9 33 243-275 10-42 (184)
334 PRK06581 DNA polymerase III su 97.3 0.0046 1E-07 58.8 13.3 126 243-393 15-163 (263)
335 PRK09376 rho transcription ter 97.3 0.0013 2.8E-08 67.0 9.9 23 246-268 172-194 (416)
336 PRK08233 hypothetical protein; 97.3 0.0033 7.1E-08 57.0 11.9 33 244-276 4-37 (182)
337 PF13086 AAA_11: AAA domain; P 97.3 0.0002 4.4E-09 67.1 4.0 22 246-267 20-41 (236)
338 KOG1051 Chaperone HSP104 and r 97.3 0.0015 3.2E-08 72.6 10.8 149 208-388 185-360 (898)
339 smart00072 GuKc Guanylate kina 97.3 0.00071 1.5E-08 62.1 7.1 25 243-267 2-26 (184)
340 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0019 4.1E-08 56.1 9.3 27 243-269 22-48 (133)
341 COG1116 TauB ABC-type nitrate/ 97.3 0.0022 4.8E-08 61.1 10.4 24 245-268 31-54 (248)
342 cd01121 Sms Sms (bacterial rad 97.3 0.0017 3.6E-08 66.4 10.3 70 239-308 78-172 (372)
343 PRK03731 aroL shikimate kinase 97.3 0.00029 6.4E-09 63.6 4.3 32 244-275 3-34 (171)
344 PRK11823 DNA repair protein Ra 97.2 0.0014 3E-08 68.7 9.8 70 239-308 76-170 (446)
345 COG4619 ABC-type uncharacteriz 97.2 0.00086 1.9E-08 60.1 6.8 24 244-267 30-53 (223)
346 PRK14530 adenylate kinase; Pro 97.2 0.00029 6.3E-09 66.4 4.2 31 244-274 4-34 (215)
347 PRK13808 adenylate kinase; Pro 97.2 0.002 4.4E-08 64.5 10.4 29 246-274 3-31 (333)
348 PRK09354 recA recombinase A; P 97.2 0.0012 2.7E-08 66.4 8.9 70 239-308 56-152 (349)
349 PRK06547 hypothetical protein; 97.2 0.00044 9.6E-09 63.0 5.2 33 243-275 15-47 (172)
350 PRK06762 hypothetical protein; 97.2 0.00028 6E-09 63.5 3.8 33 243-275 2-34 (166)
351 COG1102 Cmk Cytidylate kinase 97.2 0.00028 6.1E-09 62.6 3.6 28 246-273 3-30 (179)
352 cd01128 rho_factor Transcripti 97.2 0.0025 5.5E-08 61.5 10.6 27 243-269 16-42 (249)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0013 2.7E-08 58.0 7.5 62 243-307 26-101 (144)
354 PLN02674 adenylate kinase 97.2 0.00077 1.7E-08 64.7 6.6 31 244-274 32-62 (244)
355 cd00227 CPT Chloramphenicol (C 97.2 0.0003 6.6E-09 64.0 3.5 34 243-276 2-35 (175)
356 PRK13764 ATPase; Provisional 97.2 0.0011 2.4E-08 71.4 8.2 62 243-305 257-335 (602)
357 TIGR00767 rho transcription te 97.2 0.0025 5.4E-08 65.2 10.3 25 244-268 169-193 (415)
358 PRK05703 flhF flagellar biosyn 97.2 0.0063 1.4E-07 63.3 13.5 63 243-305 221-310 (424)
359 cd03243 ABC_MutS_homologs The 97.2 0.0023 5E-08 59.6 9.3 64 244-307 30-121 (202)
360 TIGR01360 aden_kin_iso1 adenyl 97.2 0.0004 8.6E-09 63.4 4.1 31 244-274 4-34 (188)
361 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0015 3.4E-08 58.1 7.7 98 243-360 25-144 (157)
362 PRK02496 adk adenylate kinase; 97.1 0.00038 8.2E-09 63.8 3.8 29 246-274 4-32 (184)
363 cd03216 ABC_Carb_Monos_I This 97.1 0.0017 3.6E-08 58.5 7.9 26 243-268 26-51 (163)
364 PF13245 AAA_19: Part of AAA d 97.1 0.00069 1.5E-08 53.0 4.6 33 245-277 12-51 (76)
365 PRK14528 adenylate kinase; Pro 97.1 0.00043 9.4E-09 63.8 4.0 30 245-274 3-32 (186)
366 PLN02199 shikimate kinase 97.1 0.00095 2.1E-08 65.5 6.4 33 243-275 102-134 (303)
367 PF04665 Pox_A32: Poxvirus A32 97.1 0.015 3.3E-07 55.6 14.4 126 243-393 13-172 (241)
368 COG1855 ATPase (PilT family) [ 97.1 0.00055 1.2E-08 69.7 4.8 98 147-268 170-288 (604)
369 COG1936 Predicted nucleotide k 97.1 0.00036 7.9E-09 62.7 3.1 29 246-275 3-31 (180)
370 PTZ00088 adenylate kinase 1; P 97.1 0.00046 1E-08 65.8 4.0 31 245-275 8-38 (229)
371 PF00519 PPV_E1_C: Papillomavi 97.1 0.00053 1.2E-08 69.0 4.5 113 239-378 258-383 (432)
372 PRK04296 thymidine kinase; Pro 97.1 0.004 8.7E-08 57.6 10.0 30 245-274 4-36 (190)
373 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0026 5.7E-08 59.2 8.8 21 244-264 29-49 (200)
374 TIGR01351 adk adenylate kinase 97.1 0.00049 1.1E-08 64.6 3.9 29 246-274 2-30 (210)
375 PRK11889 flhF flagellar biosyn 97.1 0.007 1.5E-07 61.8 12.3 58 215-276 217-277 (436)
376 TIGR02858 spore_III_AA stage I 97.1 0.0019 4.1E-08 63.1 8.1 26 244-269 112-137 (270)
377 KOG2543 Origin recognition com 97.1 0.0043 9.2E-08 62.3 10.4 131 242-392 29-194 (438)
378 PF10236 DAP3: Mitochondrial r 97.1 0.035 7.6E-07 55.4 17.2 100 294-394 156-280 (309)
379 PLN02200 adenylate kinase fami 97.1 0.00064 1.4E-08 65.1 4.5 35 243-279 43-77 (234)
380 PRK00279 adk adenylate kinase; 97.0 0.00056 1.2E-08 64.4 4.1 29 246-274 3-31 (215)
381 PRK04301 radA DNA repair and r 97.0 0.0034 7.4E-08 62.8 9.8 40 239-278 98-146 (317)
382 cd02019 NK Nucleoside/nucleoti 97.0 0.00097 2.1E-08 51.0 4.5 29 246-274 2-31 (69)
383 TIGR01613 primase_Cterm phage/ 97.0 0.0027 5.8E-08 63.2 9.0 82 214-305 54-139 (304)
384 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.0038 8.2E-08 59.2 9.5 63 243-305 31-121 (222)
385 TIGR02238 recomb_DMC1 meiotic 97.0 0.0033 7.3E-08 62.7 9.6 27 239-265 92-118 (313)
386 COG4650 RtcR Sigma54-dependent 97.0 0.0025 5.3E-08 61.8 8.1 65 243-307 208-295 (531)
387 PF13479 AAA_24: AAA domain 97.0 0.0031 6.7E-08 59.4 8.8 59 244-306 4-80 (213)
388 COG3854 SpoIIIAA ncharacterize 97.0 0.0017 3.7E-08 61.0 6.6 63 244-306 138-230 (308)
389 smart00534 MUTSac ATPase domai 97.0 0.0038 8.3E-08 57.4 9.0 62 246-307 2-91 (185)
390 PRK14527 adenylate kinase; Pro 97.0 0.00057 1.2E-08 63.1 3.5 32 243-274 6-37 (191)
391 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0042 9.1E-08 60.5 9.5 87 205-305 56-160 (264)
392 PF13238 AAA_18: AAA domain; P 97.0 0.0005 1.1E-08 58.4 2.7 22 246-267 1-22 (129)
393 PRK04182 cytidylate kinase; Pr 97.0 0.00074 1.6E-08 61.1 3.9 30 245-274 2-31 (180)
394 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0027 5.9E-08 59.4 7.8 63 243-305 29-119 (204)
395 COG2909 MalT ATP-dependent tra 97.0 0.059 1.3E-06 59.4 18.7 173 243-441 37-265 (894)
396 PRK06696 uridine kinase; Valid 97.0 0.0024 5.3E-08 60.5 7.5 40 243-282 22-64 (223)
397 KOG0482 DNA replication licens 96.9 0.00065 1.4E-08 70.0 3.7 170 210-393 343-541 (721)
398 PLN02459 probable adenylate ki 96.9 0.0046 9.9E-08 59.9 9.3 30 245-274 31-60 (261)
399 PF12780 AAA_8: P-loop contain 96.9 0.002 4.4E-08 62.8 6.9 84 210-304 9-99 (268)
400 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0032 6.9E-08 57.6 7.8 65 243-307 25-102 (177)
401 cd00046 DEXDc DEAD-like helica 96.9 0.0016 3.5E-08 55.1 5.5 24 244-267 1-24 (144)
402 TIGR01069 mutS2 MutS2 family p 96.9 0.0062 1.3E-07 68.0 11.4 23 244-266 323-345 (771)
403 cd03247 ABCC_cytochrome_bd The 96.9 0.0051 1.1E-07 56.0 9.0 26 243-268 28-53 (178)
404 KOG2383 Predicted ATPase [Gene 96.9 0.0039 8.4E-08 62.9 8.7 26 242-267 113-138 (467)
405 PLN03187 meiotic recombination 96.9 0.0042 9.1E-08 62.7 9.1 27 239-265 122-148 (344)
406 PF00406 ADK: Adenylate kinase 96.9 0.00059 1.3E-08 60.4 2.7 27 248-274 1-27 (151)
407 COG0563 Adk Adenylate kinase a 96.9 0.00091 2E-08 61.2 3.9 29 245-275 2-30 (178)
408 PRK01184 hypothetical protein; 96.9 0.0009 2E-08 61.2 3.9 29 245-274 3-31 (184)
409 PTZ00035 Rad51 protein; Provis 96.9 0.0061 1.3E-07 61.5 10.1 28 239-266 114-141 (337)
410 PRK00409 recombination and DNA 96.9 0.0081 1.8E-07 67.2 12.0 97 243-358 327-452 (782)
411 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00099 2.1E-08 59.8 3.9 29 246-274 3-31 (171)
412 TIGR00416 sms DNA repair prote 96.9 0.0073 1.6E-07 63.4 10.8 68 239-307 90-183 (454)
413 cd03228 ABCC_MRP_Like The MRP 96.9 0.0036 7.8E-08 56.7 7.5 26 243-268 28-53 (171)
414 PF07693 KAP_NTPase: KAP famil 96.9 0.019 4.1E-07 57.2 13.5 29 242-270 19-47 (325)
415 PF13521 AAA_28: AAA domain; P 96.8 0.00084 1.8E-08 60.2 3.1 26 246-272 2-27 (163)
416 PF02367 UPF0079: Uncharacteri 96.8 0.0024 5.2E-08 54.7 5.7 64 243-306 15-100 (123)
417 PF01745 IPT: Isopentenyl tran 96.8 0.0011 2.4E-08 61.7 3.9 35 245-279 3-37 (233)
418 PHA02530 pseT polynucleotide k 96.8 0.0011 2.3E-08 65.7 4.1 31 244-274 3-34 (300)
419 PRK14526 adenylate kinase; Pro 96.8 0.0012 2.6E-08 62.1 4.0 28 246-273 3-30 (211)
420 PRK04220 2-phosphoglycerate ki 96.8 0.03 6.5E-07 55.3 13.6 28 243-270 92-119 (301)
421 PHA00350 putative assembly pro 96.8 0.0025 5.5E-08 65.2 6.3 121 245-371 3-158 (399)
422 cd02027 APSK Adenosine 5'-phos 96.8 0.0016 3.4E-08 57.8 4.3 30 246-275 2-34 (149)
423 COG0194 Gmk Guanylate kinase [ 96.8 0.012 2.5E-07 53.8 9.8 69 371-443 116-186 (191)
424 cd03246 ABCC_Protease_Secretio 96.8 0.0063 1.4E-07 55.1 8.3 25 243-267 28-52 (173)
425 COG5271 MDN1 AAA ATPase contai 96.8 0.029 6.2E-07 65.5 14.7 127 244-388 889-1044(4600)
426 PRK10078 ribose 1,5-bisphospho 96.8 0.0013 2.7E-08 60.5 3.7 30 244-273 3-32 (186)
427 KOG0477 DNA replication licens 96.7 0.0042 9.1E-08 65.7 7.7 119 246-375 485-629 (854)
428 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.0064 1.4E-07 57.4 8.4 61 244-304 31-119 (216)
429 PRK13894 conjugal transfer ATP 96.7 0.005 1.1E-07 61.7 8.1 25 243-267 148-172 (319)
430 PRK10867 signal recognition pa 96.7 0.19 4.1E-06 52.5 19.8 65 216-280 73-141 (433)
431 PRK13833 conjugal transfer pro 96.7 0.0051 1.1E-07 61.6 7.9 25 243-267 144-168 (323)
432 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0076 1.7E-07 60.3 9.2 27 239-265 92-118 (316)
433 PLN03186 DNA repair protein RA 96.7 0.0079 1.7E-07 60.7 9.2 28 239-266 119-146 (342)
434 PRK12724 flagellar biosynthesi 96.7 0.029 6.3E-07 57.9 13.3 36 243-278 223-262 (432)
435 cd03227 ABC_Class2 ABC-type Cl 96.7 0.0075 1.6E-07 54.2 8.1 64 244-307 22-112 (162)
436 COG2874 FlaH Predicted ATPases 96.7 0.0059 1.3E-07 56.8 7.4 37 231-267 14-52 (235)
437 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0019 4.2E-08 62.7 4.5 39 239-277 32-73 (259)
438 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0016 3.6E-08 62.7 3.9 31 246-276 2-35 (249)
439 TIGR02782 TrbB_P P-type conjug 96.6 0.0021 4.5E-08 63.8 4.6 25 243-267 132-156 (299)
440 cd03238 ABC_UvrA The excision 96.6 0.0076 1.6E-07 55.1 8.0 24 243-266 21-44 (176)
441 PRK12339 2-phosphoglycerate ki 96.6 0.0021 4.5E-08 59.9 4.3 29 243-271 3-31 (197)
442 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.0026 5.6E-08 60.9 5.0 39 239-277 17-58 (237)
443 PRK09519 recA DNA recombinatio 96.6 0.0075 1.6E-07 66.7 9.1 70 239-308 56-152 (790)
444 PF06745 KaiC: KaiC; InterPro 96.6 0.0019 4.2E-08 61.1 4.1 37 239-275 15-55 (226)
445 COG0467 RAD55 RecA-superfamily 96.6 0.0027 5.8E-08 61.6 5.0 40 239-278 19-61 (260)
446 PF08423 Rad51: Rad51; InterP 96.6 0.01 2.2E-07 57.5 9.1 107 239-352 34-184 (256)
447 PF08433 KTI12: Chromatin asso 96.6 0.0028 6.2E-08 61.9 5.1 61 246-306 4-82 (270)
448 TIGR01448 recD_rel helicase, p 96.6 0.018 3.9E-07 64.0 11.9 32 244-275 339-375 (720)
449 PRK00889 adenylylsulfate kinas 96.6 0.0029 6.3E-08 57.4 4.7 35 243-277 4-41 (175)
450 COG4133 CcmA ABC-type transpor 96.6 0.012 2.5E-07 53.9 8.4 25 244-268 29-53 (209)
451 PRK05541 adenylylsulfate kinas 96.6 0.0023 4.9E-08 58.2 4.0 26 243-268 7-32 (176)
452 TIGR02533 type_II_gspE general 96.6 0.0096 2.1E-07 63.0 9.2 86 205-305 218-322 (486)
453 PRK10646 ADP-binding protein; 96.6 0.019 4.1E-07 51.1 9.6 26 244-269 29-54 (153)
454 smart00487 DEXDc DEAD-like hel 96.6 0.0082 1.8E-07 54.0 7.7 25 244-268 25-50 (201)
455 PRK14021 bifunctional shikimat 96.6 0.0023 5E-08 68.7 4.6 31 245-275 8-38 (542)
456 COG2804 PulE Type II secretory 96.5 0.0098 2.1E-07 62.0 8.9 51 205-270 234-285 (500)
457 PLN02165 adenylate isopentenyl 96.5 0.0023 5E-08 64.0 4.1 37 243-279 43-79 (334)
458 KOG3354 Gluconate kinase [Carb 96.5 0.002 4.3E-08 56.8 3.2 167 242-439 11-188 (191)
459 PRK10416 signal recognition pa 96.5 0.0058 1.3E-07 61.2 6.9 61 216-277 87-151 (318)
460 TIGR02236 recomb_radA DNA repa 96.5 0.0057 1.2E-07 60.9 6.9 40 239-278 91-139 (310)
461 COG2805 PilT Tfp pilus assembl 96.5 0.003 6.5E-08 61.6 4.6 53 203-274 103-160 (353)
462 KOG0481 DNA replication licens 96.5 0.0057 1.2E-07 63.4 6.8 138 245-393 366-530 (729)
463 PRK14529 adenylate kinase; Pro 96.5 0.002 4.3E-08 61.1 3.3 28 246-273 3-30 (223)
464 COG3267 ExeA Type II secretory 96.5 0.1 2.3E-06 50.0 14.8 156 243-421 50-247 (269)
465 cd02022 DPCK Dephospho-coenzym 96.5 0.0027 5.9E-08 58.0 4.1 29 246-275 2-30 (179)
466 PF02562 PhoH: PhoH-like prote 96.5 0.013 2.8E-07 54.8 8.6 24 244-267 20-43 (205)
467 PF00488 MutS_V: MutS domain V 96.5 0.015 3.4E-07 55.6 9.4 97 244-358 44-168 (235)
468 TIGR00959 ffh signal recogniti 96.5 0.31 6.7E-06 50.8 19.5 65 216-280 72-140 (428)
469 TIGR02322 phosphon_PhnN phosph 96.5 0.0023 4.9E-08 58.3 3.4 25 245-269 3-27 (179)
470 TIGR00064 ftsY signal recognit 96.5 0.0081 1.8E-07 58.8 7.5 62 217-279 46-111 (272)
471 PTZ00301 uridine kinase; Provi 96.5 0.037 8.1E-07 52.0 11.6 90 347-439 108-205 (210)
472 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0029 6.2E-08 58.8 4.0 39 242-280 14-53 (199)
473 COG2274 SunT ABC-type bacterio 96.4 0.0067 1.5E-07 66.9 7.4 29 240-268 496-524 (709)
474 PRK12727 flagellar biosynthesi 96.4 0.012 2.6E-07 62.3 8.8 64 242-305 349-439 (559)
475 cd03230 ABC_DR_subfamily_A Thi 96.4 0.014 3E-07 52.9 8.3 25 243-267 26-50 (173)
476 cd01130 VirB11-like_ATPase Typ 96.4 0.0024 5.2E-08 58.8 3.2 26 243-268 25-50 (186)
477 PRK12338 hypothetical protein; 96.4 0.003 6.4E-08 62.9 4.0 29 243-271 4-32 (319)
478 PF01583 APS_kinase: Adenylyls 96.4 0.0032 7E-08 56.2 3.8 37 244-280 3-42 (156)
479 cd03286 ABC_MSH6_euk MutS6 hom 96.4 0.017 3.7E-07 54.6 9.0 63 243-305 30-120 (218)
480 cd04119 RJL RJL (RabJ-Like) su 96.4 0.022 4.9E-07 50.2 9.3 21 246-266 3-23 (168)
481 PRK04328 hypothetical protein; 96.4 0.0044 9.4E-08 59.9 5.0 38 239-276 19-59 (249)
482 PF03266 NTPase_1: NTPase; In 96.4 0.0027 5.9E-08 57.6 3.3 22 246-267 2-23 (168)
483 PRK10436 hypothetical protein; 96.4 0.016 3.5E-07 60.8 9.3 86 205-305 194-298 (462)
484 PF00448 SRP54: SRP54-type pro 96.4 0.0032 7E-08 58.6 3.7 25 243-267 1-25 (196)
485 COG3378 Phage associated DNA p 96.3 0.013 2.8E-07 62.0 8.5 91 208-305 201-293 (517)
486 PF05970 PIF1: PIF1-like helic 96.3 0.017 3.6E-07 59.1 9.1 27 243-269 22-48 (364)
487 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0051 1.1E-07 58.3 5.1 37 239-275 16-55 (229)
488 PF13481 AAA_25: AAA domain; P 96.3 0.0094 2E-07 54.7 6.6 24 244-267 33-56 (193)
489 cd01125 repA Hexameric Replica 96.3 0.032 7E-07 53.3 10.5 21 246-266 4-24 (239)
490 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0046 1E-07 62.9 4.9 24 244-267 135-158 (358)
491 PRK09825 idnK D-gluconate kina 96.3 0.0035 7.7E-08 57.2 3.6 35 244-280 4-38 (176)
492 COG1419 FlhF Flagellar GTP-bin 96.3 0.011 2.4E-07 60.1 7.5 104 243-364 203-333 (407)
493 cd02024 NRK1 Nicotinamide ribo 96.3 0.0038 8.2E-08 57.6 3.8 29 246-274 2-31 (187)
494 cd00984 DnaB_C DnaB helicase C 96.3 0.0055 1.2E-07 58.5 5.0 38 239-276 9-50 (242)
495 PRK05480 uridine/cytidine kina 96.3 0.0059 1.3E-07 57.1 5.1 36 243-278 6-42 (209)
496 PF09848 DUF2075: Uncharacteri 96.3 0.0072 1.6E-07 61.4 6.1 24 244-267 2-25 (352)
497 PRK11545 gntK gluconate kinase 96.3 0.0032 7E-08 56.7 3.2 26 249-274 1-26 (163)
498 cd04177 RSR1 RSR1 subgroup. R 96.3 0.024 5.2E-07 50.6 8.9 23 245-267 3-25 (168)
499 cd03115 SRP The signal recogni 96.3 0.0054 1.2E-07 55.5 4.6 35 246-280 3-40 (173)
500 PRK12337 2-phosphoglycerate ki 96.3 0.0098 2.1E-07 61.9 7.0 33 243-275 255-288 (475)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-101 Score=761.92 Aligned_cols=428 Identities=50% Similarity=0.816 Sum_probs=402.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhhcccCCceEEEEcccCCCCcchHHHHHHHhhccCCCcccch
Q 013128 6 TVLSTAASLSASAMLIRSVANDFLPAEIYDYLDSKIHLVSQYFSSQLTIVVEEFQGFSINQVFEAANYYLGNKATTTSAQ 85 (449)
Q Consensus 6 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~~ 85 (449)
++|+.+||++|++|++|+|+++++|.+++.|+.+++++|++.+++|.++.|.|++|+.+||+|.|+|.||++++++ .++
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~-~~~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSA-IAK 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchh-hhh
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred heeccccCCCCceEEeccCCCeEEeeecCeeeEEEEEEeecCCCCccCCCCCCCCcccCCCcceEEEEEEcCCchhHHHH
Q 013128 86 RFRVGKSEKEKTFEIALDRNEETFDVFKDVTLKWKLVYTQVPSSMEYRNPNLGDYNASLRSEVRHYELSFHKKHKDVVLN 165 (449)
Q Consensus 86 rl~~~~~~~~~~~~~~~~~~~~v~D~f~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 165 (449)
|++.+.+.+++++++.+++|++|.|+|+||++||.+++...+ .... .+...+.|+|+|+|++++++.|+.
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~-~~~~---------~~~~~~~r~~~L~f~k~~~e~V~~ 150 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNE-KWIF---------VEREREKRYFELTFHKKPRELVTL 150 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecC-cccc---------cccCCcceEEEEEecCccHHHhHH
Confidence 999999999999999999999999999999999999998766 3321 134678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCceeEEeeec---------cccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHh
Q 013128 166 LYLPHVLEKAKAIKEESKVVKLHTVM---------HMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYT 236 (449)
Q Consensus 166 ~yl~~v~~~~~~~~~~~~~~~~~~~~---------~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~ 236 (449)
+||+++.+++++|+.+++.+++|++. +..|.+ +.++||.+|++|+|+++.|+.|++||..|++++++|+
T Consensus 151 syl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~--v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Yk 228 (457)
T KOG0743|consen 151 SYLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRS--VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYK 228 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCccee--cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999886 458998 9999999999999999999999999999999999999
Q ss_pred hhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchh
Q 013128 237 RIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSE 316 (449)
Q Consensus 237 ~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~ 316 (449)
++|++|+||||||||||||||||++||||+|++++|+++++++..+.+|++++..++++|||+||||||.+..+++....
T Consensus 229 rvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~ 308 (457)
T KOG0743|consen 229 RVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKK 308 (457)
T ss_pred hcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877776654
Q ss_pred hhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC-
Q 013128 317 VQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH- 395 (449)
Q Consensus 317 ~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~- 395 (449)
..........+++|||||++||+||+||+++||||||||+++|||||+||||||+||+|++|++++++.|+++||+.++
T Consensus 309 ~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~ 388 (457)
T KOG0743|consen 309 KENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED 388 (457)
T ss_pred cccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 3222223567999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCHHHHHHHHHccCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhhh
Q 013128 396 HYLFEQIEELIKEVNVTPAEVAGELMKST-NAEVSLNGLVKFLHAKMTQQQK 446 (449)
Q Consensus 396 ~~l~~~i~~l~~~~~~tpa~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~ 446 (449)
|.|+++|++++++..+|||||++.||++. |++.|++.|+++|++++.+..+
T Consensus 389 h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 389 HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999987 8999999999999999875443
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-41 Score=324.56 Aligned_cols=239 Identities=24% Similarity=0.311 Sum_probs=195.1
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+...+..++++++|.++++++|++.++.++.+|+.|.++|+.+|+|+|||||||||||.||+|+|++.++.|+.+..|++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC-----hHH-HHHHHH--cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 280 QS-----NSE-LRFLLL--TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 280 ~~-----~~~-l~~~~~--~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
.. ... .+.+|. +...||||||||||++...|-..+. ..+.+.++|+-+||+.|||+.. .+++=||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t----~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ 295 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGT----SGDREVQRTMLELLNQLDGFDP--RGNVKVIM 295 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCC----CchHHHHHHHHHHHHhccCCCC--CCCeEEEE
Confidence 32 333 344444 4458999999999999875543322 2356788999999999999977 47899999
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc-------C
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK-------S 423 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~-------~ 423 (449)
+||+++.|||||+||||||++|+||+|+.++|++|++-+...-+..-.-+++.++.. .++|.|||...|.. .
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 999999999999999999999999999999999999988775433222334555544 35999999999974 2
Q ss_pred CCHHHHHHHHHHHHHHHHHhh
Q 013128 424 TNAEVSLNGLVKFLHAKMTQQ 444 (449)
Q Consensus 424 ~~~~~al~~l~~~l~~~~~~~ 444 (449)
+......+++.++.++.....
T Consensus 376 ~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 376 RRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred ccCeecHHHHHHHHHHHHhcc
Confidence 334556666777666655443
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-37 Score=315.30 Aligned_cols=212 Identities=25% Similarity=0.350 Sum_probs=186.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc--
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV-- 279 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~-- 279 (449)
..++.+|++++|.+++|+++.+.+..++++++.|.++|+.+++|||||||||||||++|+|+|++.+.+|+.+.+.++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred ----cChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 280 ----QSNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 280 ----~~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
.++..++.+|.++. .||||||||||++...|+... .....+++++||++|||+.. ..+++||++|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-------~~v~~RVlsqLLtEmDG~e~--~k~V~ViAAT 577 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-------SGVTDRVLSQLLTEMDGLEA--LKNVLVIAAT 577 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-------cchHHHHHHHHHHHcccccc--cCcEEEEecc
Confidence 35677888888875 699999999999988655222 25567899999999999976 4689999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHhc
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELMK 422 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 422 (449)
|+|+.||+||+||||||..|++|.|+.+.|.+|++.++..-...-.-+++++++.+ +||.|||.++|-.
T Consensus 578 NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 578 NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred CChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999865433334567777665 5999999998853
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=305.01 Aligned_cols=209 Identities=23% Similarity=0.340 Sum_probs=183.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc---
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV--- 279 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 279 (449)
-+..+|+++++.++++.++...+.+++++++.|+++|+..|.|+|||||||||||.||+|+||+.+.+|+.+..-++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred ---cChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 280 ---QSNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 280 ---~~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
.++..++.+|.++ ..|||||+||||++.+.|+.+. .....+++++||..|||+.. ..++.||++||
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-------s~~s~RvvNqLLtElDGl~~--R~gV~viaATN 655 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-------SSVSSRVVNQLLTELDGLEE--RRGVYVIAATN 655 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-------chhHHHHHHHHHHHhccccc--ccceEEEeecC
Confidence 3456778888876 4799999999999998766554 24567899999999999976 46799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-----HHHHHHHHHccCCCHHHHHHHH
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-----FEQIEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-----~~~i~~l~~~~~~tpa~i~~~l 420 (449)
+|+.+|||++||||||..++++.|+.++|..|++........++ .++|....+-.+||.||++.++
T Consensus 656 RPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 656 RPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred CCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 99999999999999999999999999999999999998644444 3455554455689999998776
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=298.59 Aligned_cols=207 Identities=28% Similarity=0.373 Sum_probs=177.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc---
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ--- 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (449)
...+|+++-|.++.|+++.+.+ .|++.|..|.++|=..|+|+||.||||||||.||+|+|.+.+.+||....+++.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 3568999999999999997755 799999999999999999999999999999999999999999999999988873
Q ss_pred ---ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 281 ---SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 281 ---~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
....++.+|..+ ..||||||||||++...|... +....+.++++||..|||+.. ++++|||++||.
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~-------~~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNf 448 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS-------DQHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNF 448 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc-------HHHHHHHHHHHHHHHhcCcCc--CCceEEEeccCC
Confidence 457888888876 479999999999998754432 223678999999999999976 578999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHH
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGEL 420 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 420 (449)
|+.||+||.||||||+||.+|.|+...|.+|++.|+..-.+.-.-+..-+++. .+|+.||+++..
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999986433322233334444 479999997765
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-34 Score=289.15 Aligned_cols=209 Identities=22% Similarity=0.294 Sum_probs=179.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc-----
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV----- 279 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~----- 279 (449)
..+|++++|.+....++.+.+.. +.+|+.|..+|+.++||+|||||||||||+||+|+|++++.+|+.++..++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 35799999999999999988766 999999999999999999999999999999999999999999999998776
Q ss_pred -cChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc--CCCCeEEEEEcC
Q 013128 280 -QSNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC--CGEGRIIVFTTN 354 (449)
Q Consensus 280 -~~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~~~~iiI~tTN 354 (449)
.++..++.+|..+. .|||+||||||++.+.|...+. +-.++++++||+.||++... .|..|+||++||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqr-------eMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQR-------EMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHH-------HHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence 35688999999875 7999999999999886554332 33568999999999998654 347799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
+|+.|||||+|+||||..|.+..|+..+|..|++.....-.+...-++.+++.- -+|-.||+..++-
T Consensus 338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 999999999999999999999999999999999998886555554455555553 3588888876663
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-34 Score=300.19 Aligned_cols=213 Identities=28% Similarity=0.389 Sum_probs=181.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc--
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ-- 280 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (449)
..+.+|++++|.++.|++|.+.+ .|+++|+.|.++|...|+|+||.||||||||.||+|+|.+.+.+|+.++.+++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34589999999999999999876 799999999999999999999999999999999999999999999999999873
Q ss_pred ----ChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 281 ----SNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 281 ----~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
..+..+.+|..+. .||||+|||||++...+..... ...+.+...++++||..|||..+. .++|++++||
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~---~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGT---GGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccccccc---CCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 3677888888765 7999999999999875531011 113466788999999999999774 7899999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC-CHHHHHHHHH-ccCCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY-LFEQIEELIK-EVNVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~-l~~~i~~l~~-~~~~tpa~i~~~l~ 421 (449)
+++.||+||+||||||++|+++.|+...|.+|++.++...... -..++..+.. ..++++|||++++.
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999999999999999876443 2223344443 35799999999886
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=258.42 Aligned_cols=214 Identities=25% Similarity=0.340 Sum_probs=177.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS- 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (449)
++..++.+++|.+-+|++|++.++.++...+.|+++|+.+|+|+|||||||||||+|++|+|++....|+.+..+++..
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999888732
Q ss_pred -----hHHHHHHH--HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 282 -----NSELRFLL--LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 282 -----~~~l~~~~--~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
....+..| .+.+.|+||||||||++...+-..+ .+.+.+.++++-+|||.|||+.. ..++-+|++||
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaq----tgadrevqril~ellnqmdgfdq--~~nvkvimatn 302 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ----TGADREVQRILIELLNQMDGFDQ--TTNVKVIMATN 302 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc----ccccHHHHHHHHHHHHhccCcCc--ccceEEEEecC
Confidence 23344444 4456899999999999976443222 22346678899999999999976 46789999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK 422 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~ 422 (449)
+.+.|||||+||||+|++|+||+|+..+++-++......-+..-.-+++.++.+ -.+|.|+|..+|..
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 999999999999999999999999999999888877665433333345555544 46999999888853
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-33 Score=287.59 Aligned_cols=212 Identities=23% Similarity=0.313 Sum_probs=174.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc---
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV--- 279 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 279 (449)
-+..+|++++|.+++|.+|++.+..++++++.+.. |...+.|+|||||||||||.+|+|+|-++...|+.+..-++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 45578999999999999999999999999998865 66667899999999999999999999999999999986665
Q ss_pred ---cChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 280 ---QSNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 280 ---~~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
+++.+++..|.++. +|||||+||+|.+++.|++.+++ .+...+++|+||.+|||+.......+.||++||
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS-----GGVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS-----GGVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc-----cccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 46788999999875 79999999999999988776543 366789999999999999875678899999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCH-HHHHHHHHHHhCcCCCCCHHHHHHHHHc--cCCCHHHHHHHH
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNT-SVFKQLAFNYLGISHHYLFEQIEELIKE--VNVTPAEVAGEL 420 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~-~~r~~l~~~~l~~~~~~l~~~i~~l~~~--~~~tpa~i~~~l 420 (449)
+||.|||||+||||||+-++++.+.. +.+..+++..-..-...-.-++.++++. .++|.||+-.+|
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 99999999999999999999998865 4455566544332111111223344443 469999987766
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1e-31 Score=273.98 Aligned_cols=233 Identities=24% Similarity=0.304 Sum_probs=184.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc-
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ- 280 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (449)
..+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+++++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 4566799999999999999999999999999999999999999999999999999999999999999999999876552
Q ss_pred -----ChHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 281 -----SNSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 281 -----~~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
....++.+|.. ..+|+||||||||.++..+..... ........++..||+.+|++... .+++||+||
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~----~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aT 291 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT----GADREVQRILLELLNQMDGFDQT--TNVKVIMAT 291 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccC----CccHHHHHHHHHHHHHhhccCCC--CCEEEEEec
Confidence 12344555443 468999999999999764422111 11234567889999999998653 568999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc-------CCC
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK-------STN 425 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~-------~~~ 425 (449)
|+++.||||++||||||.+|++|+|+.++|..|++.++...+....-++..++.. .++|++||..++.. ...
T Consensus 292 N~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~ 371 (398)
T PTZ00454 292 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR 371 (398)
T ss_pred CCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999875443323345556554 37999999888753 222
Q ss_pred HHHHHHHHHHHHHHH
Q 013128 426 AEVSLNGLVKFLHAK 440 (449)
Q Consensus 426 ~~~al~~l~~~l~~~ 440 (449)
.....+++.++++..
T Consensus 372 ~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 YVILPKDFEKGYKTV 386 (398)
T ss_pred CccCHHHHHHHHHHH
Confidence 344555666666554
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.7e-33 Score=260.20 Aligned_cols=235 Identities=26% Similarity=0.325 Sum_probs=183.8
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+...+..+|.++.|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred c-----ChHHH-HHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 280 Q-----SNSEL-RFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 280 ~-----~~~~l-~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
. +...| +.+|.- ...|||+||||||++...+=...+ ....+.++++-+|||.+||+.+ .+.+-||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~S----ggerEiQrtmLELLNQldGFds--rgDvKvim 329 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNS----GGEREIQRTMLELLNQLDGFDS--RGDVKVIM 329 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCC----ccHHHHHHHHHHHHHhccCccc--cCCeEEEE
Confidence 2 33344 344433 358999999999999764422221 2345667888899999999988 46799999
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHH-HccCCCHHHHHHHHhcC-------
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELI-KEVNVTPAEVAGELMKS------- 423 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~tpa~i~~~l~~~------- 423 (449)
+||+.+.|||||+||||+|+.|+||.|+...++.|+..+-..-...-.-.++.++ .+..+|.|||..+|...
T Consensus 330 ATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRE 409 (440)
T ss_pred ecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999987555432211122345554 34569999999888642
Q ss_pred CCHHHHHHHHHHHHHHH
Q 013128 424 TNAEVSLNGLVKFLHAK 440 (449)
Q Consensus 424 ~~~~~al~~l~~~l~~~ 440 (449)
+.-.+..+++.++.+..
T Consensus 410 rRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 410 RRMKVTMEDFKKAKEKV 426 (440)
T ss_pred HHhhccHHHHHHHHHHH
Confidence 22334445555555443
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.8e-32 Score=250.01 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=176.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
.-+..+++-+.|.+.+.++|.+-++.+.++|+.|..+|++.|+|+|||||||||||.||+|+|++....|+.++.+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999988742
Q ss_pred -----h-HHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 -----N-SELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 -----~-~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
. .-.+.+|.. ...|+|||+||||.+...+...+. +.+++.+++.-+|||.+||+... .++-+|++|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~----ggdsevqrtmlellnqldgfeat--knikvimat 293 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGS----GGDSEVQRTMLELLNQLDGFEAT--KNIKVIMAT 293 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCC----CccHHHHHHHHHHHHhccccccc--cceEEEEec
Confidence 2 334455544 458999999999999764433222 23567788999999999999774 678899999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK 422 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~ 422 (449)
|+.+.|||||+||||+|+.|+||+|+.++|.+|++..-..-+..-.-.++.++++ .+.|.||+...|..
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 9999999999999999999999999999999999876543322222234444444 35888888888764
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-31 Score=260.37 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=170.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC---
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS--- 281 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--- 281 (449)
...|++|+|.++.|+-|.+.+..++.-|++|+-+-.|| +|+|++||||||||+||+|+|.+++..||.|+.+.+.+
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 36799999999999999999999999999999999888 79999999999999999999999999999999888753
Q ss_pred --hHHHHHHHH---cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCC-C-eEEEEEcC
Q 013128 282 --NSELRFLLL---TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGE-G-RIIVFTTN 354 (449)
Q Consensus 282 --~~~l~~~~~---~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~-~-~iiI~tTN 354 (449)
...+.+++. +...|++|||||||.++..|++.+ +++.+++.-++||..|||+...... . |+|+++||
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~------EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS------EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc------chhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 233444433 335899999999999997555442 4567788999999999999765332 2 66778999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHH
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGEL 420 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 420 (449)
.|+.||.||+| ||.+.|++|.|+.++|+.|++..|......-.-.++.+.++. ++|.+||...|
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 99999999999 999999999999999999999999864322222334444443 58999998877
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-31 Score=275.01 Aligned_cols=231 Identities=26% Similarity=0.356 Sum_probs=193.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc---
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ--- 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (449)
...+|.+++|.++.|+++.+.+ .|++.|..|.++|...|+|+||+||||||||+||+|+|.+.+.+++.++.+++.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 4468999999999999998865 799999999999999999999999999999999999999999999999999873
Q ss_pred ---ChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 281 ---SNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 281 ---~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
..+..+.+|.++. .||||||||||+....|+... ...+.+...++++||.+|||... ++++|+|++||+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~----GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNR 297 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL----GGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNR 297 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCC----CCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCC
Confidence 4688899998886 599999999999987554431 12356677899999999999974 478999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc------------
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK------------ 422 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~------------ 422 (449)
|+-+||||+||||||++|.++.|+...|+++++.++......-.-.+..+++. .+++.|++++.+..
T Consensus 298 pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 298 PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCee
Confidence 99999999999999999999999999999999977765433322233334444 36999999888842
Q ss_pred --CCCHHHHHHHHHHHHHHHH
Q 013128 423 --STNAEVSLNGLVKFLHAKM 441 (449)
Q Consensus 423 --~~~~~~al~~l~~~l~~~~ 441 (449)
..+.+.|.+.++...+++-
T Consensus 378 i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 378 ITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred EeccchHHHHHHHhcCcCcCC
Confidence 2478888888887766554
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.7e-31 Score=243.47 Aligned_cols=230 Identities=23% Similarity=0.298 Sum_probs=177.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc-
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ- 280 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (449)
-.+..++++++|.+.+.+++.+.+..++.+++.|.++|+.+|+|+|+|||||||||.||+|.|...+..|..+-...+.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 3455689999999999999999999999999999999999999999999999999999999999999888777554442
Q ss_pred ----ChHHH-HH--HHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 281 ----SNSEL-RF--LLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 281 ----~~~~l-~~--~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
+...| +. .+.+...|+||||||+|++...+-... .....+.+++.-+|||.+||+.+ .+.+-||++|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe----k~GDREVQRTMLELLNQLDGFss--~~~vKviAAT 317 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE----KAGDREVQRTMLELLNQLDGFSS--DDRVKVIAAT 317 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc----ccccHHHHHHHHHHHHhhcCCCC--ccceEEEeec
Confidence 23333 33 344556899999999999976432221 12346678899999999999977 4788999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC---CCCCHHHHHHHHHccCCCHHHHHHHHhc-------C
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS---HHYLFEQIEELIKEVNVTPAEVAGELMK-------S 423 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~~l~~-------~ 423 (449)
|+.+-|||||+|.||+|+.|+||.|+.+.|..|++.+-..- +..-++++.+-.+ .|..|+....|.. +
T Consensus 318 NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTd--dFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 318 NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTD--DFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred ccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccc--ccCchhheeeehhhhHHHHhc
Confidence 99999999999999999999999999999999998766543 2333444443332 3777777655542 3
Q ss_pred CCHHHHHHHHHHHHHH
Q 013128 424 TNAEVSLNGLVKFLHA 439 (449)
Q Consensus 424 ~~~~~al~~l~~~l~~ 439 (449)
+-.+...+.+.+.+.+
T Consensus 396 ~atev~heDfmegI~e 411 (424)
T KOG0652|consen 396 GATEVTHEDFMEGILE 411 (424)
T ss_pred ccccccHHHHHHHHHH
Confidence 3334444555444443
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=267.59 Aligned_cols=207 Identities=22% Similarity=0.285 Sum_probs=180.7
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc------
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV------ 279 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~------ 279 (449)
..|++++|..++|+.+.+.+..+.+++..|...+.+.+.|+|||||||||||.||.|+|...+..++.+..-++
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred cChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC
Q 013128 280 QSNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE 357 (449)
Q Consensus 280 ~~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~ 357 (449)
.++..++.+|.++. +|||||+||+|.+++.|+..+ .+...+++++||..|||... -.++.|+++|.+|+
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-------TGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-------TGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPD 814 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-------CCchHHHHHHHHHhhccccc--cceEEEEEecCCcc
Confidence 35678888888774 799999999999998655433 24456899999999999876 47899999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 358 KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 358 ~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
.|||||+||||+|++++-|.|++.+|.+|++..-.....+-.-+++-++..+ +||.||++.+|.
T Consensus 815 liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 815 LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH
Confidence 9999999999999999999999999999999776654444444555555544 699999998884
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=3e-30 Score=263.95 Aligned_cols=237 Identities=24% Similarity=0.302 Sum_probs=186.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+..+|++++|.+++++++.+.+..++.+++.|+.+|..+++|+|||||||||||++|+++|++++.+++.++++.+..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...++.+|..+ ..|+||||||||.++..+...... .......++..|++.+|++.. ..++.||+||
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~----~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aT 277 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS----GDREVQRTLMQLLAEMDGFDP--RGNVKIIAAT 277 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC----ccHHHHHHHHHHHHhccccCC--CCCEEEEEec
Confidence 23445555543 479999999999998643322111 123445678889999998754 3578999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc-------CCC
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK-------STN 425 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~-------~~~ 425 (449)
|+++.+|+|++|||||+..|++|.|+.++|.+|++.++..........+..++.. .+++++||..++.. ...
T Consensus 278 n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~ 357 (389)
T PRK03992 278 NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR 357 (389)
T ss_pred CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999875433222234555544 36999999888753 222
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013128 426 AEVSLNGLVKFLHAKMTQQ 444 (449)
Q Consensus 426 ~~~al~~l~~~l~~~~~~~ 444 (449)
.....+.+.++++..+...
T Consensus 358 ~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 358 TEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred CCcCHHHHHHHHHHHhccc
Confidence 3456667777776654433
No 18
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=2.9e-30 Score=268.41 Aligned_cols=183 Identities=22% Similarity=0.389 Sum_probs=150.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc----------EE
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD----------IY 272 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------~~ 272 (449)
.++.+|++|+|.+++++.|.+.+..++.+++.|+..|+++++|+|||||||||||++|+++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999765 33
Q ss_pred EEeccccc------ChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc
Q 013128 273 DLDLSAVQ------SNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW 340 (449)
Q Consensus 273 ~l~~s~~~------~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 340 (449)
.+..+.+. .+..++.+|..+ ..|+||||||+|.++..++.... .......+++||+.|||+.
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s------~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS------SDVETTVVPQLLSELDGVE 329 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc------chHHHHHHHHHHHHhcccc
Confidence 33333321 223444444433 36999999999999864432211 1223567899999999987
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 341 SCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 341 ~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
+. ++++||+|||+++.|||||+||||||.+|+|++|+.+++++|++.|+..
T Consensus 330 ~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 SL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 63 5799999999999999999999999999999999999999999999874
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=4.6e-30 Score=263.58 Aligned_cols=235 Identities=24% Similarity=0.289 Sum_probs=183.9
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+...++.+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 33456689999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred cC------hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 280 QS------NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 280 ~~------~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
.+ ...++.+|.. ...|+||||||||.++..+..... ........++..||+.+||+.. ..++.||+
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~s----gg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ 327 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATS----GGEKEIQRTMLELLNQLDGFDS--RGDVKVIM 327 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCC----cccHHHHHHHHHHHHHHhhhcc--cCCeEEEE
Confidence 32 2234444433 357999999999999864322111 1123345677889999999854 35689999
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc-------C
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK-------S 423 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~-------~ 423 (449)
|||+++.||+|++||||||.+|+||.|+.++|.+|++.++......-.-.++.++.. .++|++||..++.. .
T Consensus 328 ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 328 ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE 407 (438)
T ss_pred ecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999875433222244555543 46999999888753 2
Q ss_pred CCHHHHHHHHHHHHHHH
Q 013128 424 TNAEVSLNGLVKFLHAK 440 (449)
Q Consensus 424 ~~~~~al~~l~~~l~~~ 440 (449)
.......+.+.++++..
T Consensus 408 ~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 408 RRMKVTQADFRKAKEKV 424 (438)
T ss_pred cCCccCHHHHHHHHHHH
Confidence 22345556666666654
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=8.8e-30 Score=268.66 Aligned_cols=231 Identities=26% Similarity=0.382 Sum_probs=183.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc--
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ-- 280 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (449)
.+..+|++++|.+++|+++.+.+ .++..++.|.+.|...++|+|||||||||||++++++|++++.+++.++++++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 45679999999999999998765 468899999999999999999999999999999999999999999999887653
Q ss_pred ----ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 281 ----SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 281 ----~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
....++.+|..+ ..||||||||||.+...+..... ........+++.||+.||++.. ..+++||+|||
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~----~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn 201 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLG----GGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATN 201 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcC----CccHHHHHHHHHHHhhhccccC--CCCeEEEEecC
Confidence 345677777664 57899999999999864432211 0123445788999999999865 35689999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHhc-------CCCH
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELMK-------STNA 426 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~~~~ 426 (449)
+++.||||++||||||.+|+++.|+.++|.+|++.++.........++..++... ++|++||..++-. ....
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999865443334566666654 5999999877642 1222
Q ss_pred HHHHHHHHHHHHHH
Q 013128 427 EVSLNGLVKFLHAK 440 (449)
Q Consensus 427 ~~al~~l~~~l~~~ 440 (449)
....+.+.++++..
T Consensus 282 ~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 282 EITMNDIEEAIDRV 295 (495)
T ss_pred CCCHHHHHHHHHHH
Confidence 34455555555543
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=6e-30 Score=237.85 Aligned_cols=206 Identities=20% Similarity=0.325 Sum_probs=172.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS- 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (449)
....+||+++|.++.|+... .+..|+.+|+.|.++. |+++|+|||||||||++|+|+|++.+.+++.+...++..
T Consensus 115 ~~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHH-HHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 35678999999999998764 5668899998887764 789999999999999999999999999999999887742
Q ss_pred -----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 282 -----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 282 -----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
...++.++..+ ..|||+||||+|++.- +|+-++- .+....+++.||..|||+.. +++++.|++||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQel----RGDVsEiVNALLTelDgi~e--neGVvtIaaTN 262 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQEL----RGDVSEIVNALLTELDGIKE--NEGVVTIAATN 262 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHh----cccHHHHHHHHHHhccCccc--CCceEEEeecC
Confidence 24566676665 4799999999999875 3332221 23445688999999999976 68899999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHhc
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELMK 422 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~~ 422 (449)
+|+.||||+.+ ||...|+|..|+.++|..|++.|...-..++...++.+... .++|..||.+-.++
T Consensus 263 ~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 263 RPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred ChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 99999999999 99999999999999999999999987766666667776655 46999999998875
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2e-29 Score=277.37 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=176.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc---
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ--- 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (449)
+..+|++++|.+++|+.+.+.+..++.+++.|.++|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ---ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 281 ---SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 281 ---~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
++..++.+|..+ ..||||||||||.+++.++... ........+++||..|||+.. ..+++||+|||+
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~------~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~ 599 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF------DTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNR 599 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC------CccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCC
Confidence 345677777654 5799999999999987443221 123356788999999999865 467999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHH
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGEL 420 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 420 (449)
++.||||++||||||.+|++|+|+.++|.+||+.++......-..++..+++.. ++|++||..++
T Consensus 600 ~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 600 PDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred hhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999888754433333456666554 59999998766
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.6e-29 Score=260.49 Aligned_cols=205 Identities=21% Similarity=0.242 Sum_probs=164.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc---
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ--- 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (449)
.+.+|++|+|.+.+|+.+.+....|. ....+.|.+.++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45689999999999998887665543 234567899999999999999999999999999999999999987653
Q ss_pred ---ChHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 281 ---SNSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 281 ---~~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
++..++.+|.. ..+||||+|||||.++..+...+ +.......++.|+..|+.. ...++||+|||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~------d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~ 369 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG------DSGTTNRVLATFITWLSEK----KSPVFVVATANN 369 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC------CchHHHHHHHHHHHHHhcC----CCceEEEEecCC
Confidence 34566666653 45899999999999875322111 2234567888899998853 456899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC--HHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL--FEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l--~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
++.||||++||||||..++++.|+.++|++|++.++....... ..++..+++.. ++|++||...+.
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998743221 23456666654 799999987764
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=236.64 Aligned_cols=215 Identities=24% Similarity=0.296 Sum_probs=176.4
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+...+..|+.++.|-.++.+.+++-++.++.+|+.|-++|+.+|+|+|||||||||||.+|+|+||..+..|+.+-.|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 44556689999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cC------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 280 QS------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 280 ~~------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
.. ....+.+|..+ .+-||||+||||++.+.+-..+. +...+.+++.-+|++.+||+.. .+++-|++
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~----ggdnevqrtmleli~qldgfdp--rgnikvlm 321 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA----GGDNEVQRTMLELINQLDGFDP--RGNIKVLM 321 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC----CCcHHHHHHHHHHHHhccCCCC--CCCeEEEe
Confidence 32 23455555544 56899999999999875433221 2346678899999999999966 46788999
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC---CCCCHHHHHHHHHccCCCHHHHHHHHhc
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS---HHYLFEQIEELIKEVNVTPAEVAGELMK 422 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~~l~~ 422 (449)
+||+|+.|||||+||||+|++++|..|+-+.|..|++.+...- ..--++-+.++.. +-|.|||...|..
T Consensus 322 atnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcp--nstgaeirsvcte 393 (435)
T KOG0729|consen 322 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCP--NSTGAEIRSVCTE 393 (435)
T ss_pred ecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCC--CCcchHHHHHHHH
Confidence 9999999999999999999999999999999999987655432 1222444555554 3788999888864
No 25
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-29 Score=240.13 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=172.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS- 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (449)
.+...|++++|.+..|+.+.+.+..+++.|.+|.--.+|| +|+|||||||||||.||+|+|-+.+..|+.++.+++.+
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 3456789999999999999999999999999998776777 89999999999999999999999999999999888743
Q ss_pred -----hHHHHHHHH--cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 282 -----NSELRFLLL--TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 282 -----~~~l~~~~~--~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
+.-+..+|. +..+|+||||||||.+++.++... .+..+++-.+||-.|.|+-.. .++++|+++||
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE-------seasRRIKTEfLVQMqGVG~d-~~gvLVLgATN 277 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE-------SEASRRIKTEFLVQMQGVGND-NDGVLVLGATN 277 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc-------hHHHHHHHHHHHHhhhccccC-CCceEEEecCC
Confidence 233344444 446899999999999887444332 345667888999999998654 57899999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH-HHHHHHHHcc-CCCHHHHH
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKEV-NVTPAEVA 417 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~ 417 (449)
-|+.||.|++| ||+..|++|.|...+|..|++..++...|.|. +++.+|...+ ++|.+||+
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 99999999999 99999999999999999999999999988884 5677777664 58888874
No 26
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.96 E-value=2.6e-29 Score=206.93 Aligned_cols=97 Identities=40% Similarity=0.663 Sum_probs=93.2
Q ss_pred hCcHHHHHHHHHHHHHhhc-ccCCceEEEEcccCCCCcchHHHHHHHhhccCCCcccchheeccccCCCCceEEeccCCC
Q 013128 28 FLPAEIYDYLDSKIHLVSQ-YFSSQLTIVVEEFQGFSINQVFEAANYYLGNKATTTSAQRFRVGKSEKEKTFEIALDRNE 106 (449)
Q Consensus 28 ~~P~~l~~~~~~~~~~~~~-~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 106 (449)
|||++||+++.++++++++ +++||+||+|+|++|+++|++|+||++||++++++ +++||++++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~-~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISP-SARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCc-ccceeeecccCCCCceEEecCCCC
Confidence 6899999999999988776 89999999999999999999999999999999999 889999999999999999999999
Q ss_pred eEEeeecCeeeEEEEEEee
Q 013128 107 ETFDVFKDVTLKWKLVYTQ 125 (449)
Q Consensus 107 ~v~D~f~G~~~~W~~~~~~ 125 (449)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999999864
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2.4e-28 Score=261.75 Aligned_cols=212 Identities=27% Similarity=0.373 Sum_probs=173.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc--
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ-- 280 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (449)
....+|++++|.++.|+++.+. ..+++.++.|..+|...++|+||+||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3457999999999999988765 4678889999999999999999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 281 ----SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 281 ----~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
....++.+|..+ ..||||||||||++...++.... ........+++.||..|||+.. ..+++||+|||
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~----~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN 329 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIG----GGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATN 329 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCC----CCcHHHHHHHHHHHhhhccccC--CCCeeEEEecC
Confidence 234556666654 47999999999999764432211 1234456789999999999865 46789999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
+++.+|+||+||||||.+|+++.|+.++|.+|++.++..........+..++... +++++||...+-
T Consensus 330 ~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 330 RVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred chHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999874433344566666654 599999987764
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-28 Score=256.50 Aligned_cols=228 Identities=27% Similarity=0.391 Sum_probs=187.7
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc--
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ-- 280 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (449)
....+|++++|.++.|+.+.+.+..++..++.|.+.|..+++|+|||||||||||+||+|+|++++.+|+.++.+++.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ----ChHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 281 ----SNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 281 ----~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
++..++.+|..+. +||||||||+|.++..++.... ......+++||..|||+.. ..+++||+|||
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-------~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN 386 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-------GSGRRVVGQLLTELDGIEK--AEGVLVIAATN 386 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-------hHHHHHHHHHHHHhcCCCc--cCceEEEecCC
Confidence 3567777777664 7999999999999875543321 1226889999999999866 46799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH--HHHHHHH-ccCCCHHHHHHHHhcC-------C
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE--QIEELIK-EVNVTPAEVAGELMKS-------T 424 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~--~i~~l~~-~~~~tpa~i~~~l~~~-------~ 424 (449)
+|+.+|+|++||||||..+++|.|+.++|..+++.++......+.+ .++.+++ ..+++.+||...+.+. .
T Consensus 387 ~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 387 RPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred CccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999966554332 3344444 3459999998887531 1
Q ss_pred -CHHHHHHHHHHHHHH
Q 013128 425 -NAEVSLNGLVKFLHA 439 (449)
Q Consensus 425 -~~~~al~~l~~~l~~ 439 (449)
..+..++.+.++++.
T Consensus 467 ~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 467 RRREVTLDDFLDALKK 482 (494)
T ss_pred ccCCccHHHHHHHHHh
Confidence 224555666665554
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.7e-28 Score=235.50 Aligned_cols=221 Identities=20% Similarity=0.290 Sum_probs=181.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhc-CCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh--
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIG-RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN-- 282 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~-- 282 (449)
.+|++++|.+++++.+.+.+..++.+++.|...+ ..+++|+|||||||||||.+|+|+|++.+..++.+..+.+.+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 4899999999999999999999999999997433 3457899999999999999999999999999999999988642
Q ss_pred ---HH-HHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 283 ---SE-LRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 283 ---~~-l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
.. +..+|.- .-+||||||||+|.++..| + .. +++.....-++|...-||+.+..+..++|+++||+|
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~-s~-----dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-R-ST-----DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-c-cc-----hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 22 2333333 3479999999999998865 2 11 345556677889999999998766678888999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHhcCCCHHHHHHHHHH
Q 013128 357 EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELMKSTNAEVSLNGLVK 435 (449)
Q Consensus 357 ~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~~~~~~~al~~l~~ 435 (449)
..||.|++| ||...++++.|+.++|++|++-+|..++..-.-++.++...+ ++|..||.+.| ...|+..+.+
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC-----~~Aa~~~ire 314 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC-----RLAALRPIRE 314 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH-----HHHhHhHHHH
Confidence 999999999 999999999999999999999999987654444455555543 69999999998 4567777777
Q ss_pred HHHHH
Q 013128 436 FLHAK 440 (449)
Q Consensus 436 ~l~~~ 440 (449)
+++..
T Consensus 315 ~~~~~ 319 (386)
T KOG0737|consen 315 LLVSE 319 (386)
T ss_pred HHHhc
Confidence 77765
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.3e-28 Score=229.49 Aligned_cols=210 Identities=26% Similarity=0.329 Sum_probs=171.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh--
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN-- 282 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~-- 282 (449)
..+|+.+.|.-++..++++-+.-++.+++.+.++|+.+|.|++||||||||||.+|+++|..++.+++.+..+.+.+.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 348999999999999999999999999999999999999999999999999999999999999999999998887542
Q ss_pred ----HHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 283 ----SELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 283 ----~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
.-++..|..+. .|||||+||||+..+.+..++. ..+...+.||-.|+|.|||... -..+-+|+|||+|
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~T----s~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrp 281 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT----SSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRP 281 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecccc----chhHHHHHHHHHHHHhhccchh--cccccEEEecCCc
Confidence 33455555544 6899999999999874432222 2356678899999999999866 3678899999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC---CCCCHHHHHHHHHccCCCHHHHHHHHhc
Q 013128 357 EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS---HHYLFEQIEELIKEVNVTPAEVAGELMK 422 (449)
Q Consensus 357 ~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~~l~~ 422 (449)
+.|||||+||||+|+.+++|.|+...|..+++-.-..- +.--.+.+..+.+. +..+|+...+.+
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~--f~gad~rn~~tE 348 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG--FNGADLRNVCTE 348 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc--cChHHHhhhccc
Confidence 99999999999999999999999999998776433321 11224555555554 778887777654
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=3e-27 Score=240.37 Aligned_cols=215 Identities=24% Similarity=0.287 Sum_probs=170.2
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc
Q 013128 201 VLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ 280 (449)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (449)
...+..+|++++|.+++++.|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999988766553
Q ss_pred C------hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 281 S------NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 281 ~------~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
. ...++.++.. ...|+||||||+|.+...+...... .......++..+++.+|++.. ..++.||+|
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~----~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~t 267 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS----GDREVQRTLMQLLAELDGFDP--RGNVKVIAA 267 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC----ccHHHHHHHHHHHHHhhCCCC--CCCEEEEEe
Confidence 2 1223444433 3578999999999987533221111 123445678889999998744 356899999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
||+++.+|++++|||||+..|+++.|+.++|.+|++.++..........+..+.... +++++||..++.
T Consensus 268 tn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 268 TNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred cCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988654322212344444443 699999987764
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.6e-27 Score=233.11 Aligned_cols=168 Identities=16% Similarity=0.135 Sum_probs=131.4
Q ss_pred hHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc------ChHHHHHHHHcC-------CCCceEE
Q 013128 233 EYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ------SNSELRFLLLTM-------PSRSMLV 299 (449)
Q Consensus 233 ~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~l~~~~~~~-------~~~~Il~ 299 (449)
.+....|+.+|++++||||||||||++|+++|++++.+++.++.+++. ++..++.+|..+ .+|||||
T Consensus 138 n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLF 217 (413)
T PLN00020 138 NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLF 217 (413)
T ss_pred hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 334447888999999999999999999999999999999999988874 356777777654 3699999
Q ss_pred eeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc--------c--ccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013128 300 IEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL--------W--SCCGEGRIIVFTTNHKEKLDPALLRPGRM 369 (449)
Q Consensus 300 iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~--~~~~~~~iiI~tTN~~~~ld~aLlrpgR~ 369 (449)
|||||.+++.++..+ .....+.+...||+.+|+. | ......++||+|||+|+.|||||+|||||
T Consensus 218 IDEIDA~~g~r~~~~------~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRf 291 (413)
T PLN00020 218 INDLDAGAGRFGTTQ------YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 291 (413)
T ss_pred EehhhhcCCCCCCCC------cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCC
Confidence 999999987543211 1112344558899998863 4 12245689999999999999999999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc
Q 013128 370 DMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV 409 (449)
Q Consensus 370 d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~ 409 (449)
|..+ +.|+.++|..|++.++...+.. ..++..+++..
T Consensus 292 Dk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f 328 (413)
T PLN00020 292 EKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTF 328 (413)
T ss_pred Ccee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcC
Confidence 9965 6899999999999998865433 45666666553
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=4.4e-27 Score=264.92 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=138.9
Q ss_pred cChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh---------------------------
Q 013128 230 NGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN--------------------------- 282 (449)
Q Consensus 230 ~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~--------------------------- 282 (449)
.++..+.++|..+++|+||+||||||||+||+|+|.+++++++.++++++...
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 34667788999999999999999999999999999999999999987765421
Q ss_pred ----------------------HHHHHHHH--cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC
Q 013128 283 ----------------------SELRFLLL--TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG 338 (449)
Q Consensus 283 ----------------------~~l~~~~~--~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 338 (449)
..++.+|. +..+||||+|||||++... .....+++.||+.|||
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-------------ds~~ltL~qLLneLDg 1763 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-------------ESNYLSLGLLVNSLSR 1763 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-------------ccceehHHHHHHHhcc
Confidence 11343444 3468999999999999642 1123468999999998
Q ss_pred cccc-CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH---HHHHHHHHc-cCCCH
Q 013128 339 LWSC-CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF---EQIEELIKE-VNVTP 413 (449)
Q Consensus 339 ~~~~-~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~---~~i~~l~~~-~~~tp 413 (449)
.... ...+++||+|||+|+.|||||+||||||++|+++.|+..+|++++...+...+..+. ..+..++.. .++|+
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSG 1843 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNA 1843 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCH
Confidence 6432 246799999999999999999999999999999999999999888755432222222 134555554 47999
Q ss_pred HHHHHHHh
Q 013128 414 AEVAGELM 421 (449)
Q Consensus 414 a~i~~~l~ 421 (449)
||++.++-
T Consensus 1844 ADLanLvN 1851 (2281)
T CHL00206 1844 RDLVALTN 1851 (2281)
T ss_pred HHHHHHHH
Confidence 99987763
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=3.5e-26 Score=247.25 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=169.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc----
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ---- 280 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~---- 280 (449)
..+|+++.|.+..++++.+.+. +...+..|..++...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 4579999999999999877654 56777788888888899999999999999999999999999999999987653
Q ss_pred --ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 281 --SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 281 --~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
....++.+|..+ ..||||||||||.+...++.... ........++++||..|||+.. .+++++|+|||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~----g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG----GGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCC----CCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 234555555554 47999999999999764432111 1123456789999999999866 4679999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 357 EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 357 ~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
+.||||++||||||++|+++.|+.++|.+|++.++........-++..+.+. .++|++||.+++-
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999976533222234445554 4799999988875
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-25 Score=238.71 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=170.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-----CcEEEEecc
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK-----FDIYDLDLS 277 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~~s 277 (449)
..-.+|++++|.++++..+.+-+..++.+++.|.++++.++||+|+|||||||||++|+|+|..+. ..++.-+..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 345689999999999999999999999999999999999999999999999999999999999993 333322222
Q ss_pred cc------cChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEE
Q 013128 278 AV------QSNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRII 349 (449)
Q Consensus 278 ~~------~~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 349 (449)
+. ..+.+++-+|..+ .+|+|||+||||-+.+.++... ......+++.||..|||+-+ .+.++|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-------Eqih~SIvSTLLaLmdGlds--RgqVvv 409 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-------EQIHASIVSTLLALMDGLDS--RGQVVV 409 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-------HHhhhhHHHHHHHhccCCCC--CCceEE
Confidence 21 2456677777766 4799999999999988664432 23455678999999999977 478999
Q ss_pred EEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHH-HHHHHc-cCCCHHHHHHHHh
Q 013128 350 VFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQI-EELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 350 I~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i-~~l~~~-~~~tpa~i~~~l~ 421 (449)
|++||+++.+||||+||||||..++||+|+-++|.+|+...-.....++.... ..+.+. .++-.||+..++.
T Consensus 410 igATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 410 IGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred EcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999877766556665444 334333 3677788776664
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.8e-24 Score=238.25 Aligned_cols=208 Identities=26% Similarity=0.344 Sum_probs=168.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-- 281 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (449)
+..+|++|+|.+++++.|.+.+..++.+++.|+.+|+.+++|+|||||||||||++++++|++++.+++.+++..+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999998776532
Q ss_pred ----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 282 ----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 282 ----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
...++.+|..+ ..|+||||||||.+.+.++... .......++.|++.||++.. ...++||+|||+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-------~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~ 323 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-------GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNR 323 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-------chHHHHHHHHHHHHhhcccc--CCCEEEEeecCC
Confidence 34566666553 4789999999999986432211 12235678899999999865 356888999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHH
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGEL 420 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 420 (449)
++.||+++.|||||+..++++.|+.++|.+|++.+.......-...+..+++. .+++++++...+
T Consensus 324 ~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 324 PDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred hhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999987764322212234444443 468888887654
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-24 Score=222.08 Aligned_cols=206 Identities=23% Similarity=0.298 Sum_probs=178.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc----
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV---- 279 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 279 (449)
++.+ ++++|...+...+.+.+..++..+..+...|.++++|+|+|||||||||.+++|+|++.+..++.+++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78899999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --cChHHHHHHHHcCC--C-CceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 280 --QSNSELRFLLLTMP--S-RSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 280 --~~~~~l~~~~~~~~--~-~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
.+++.|+..|..+. + |+||+|||||.+++.+.... ....++.++|+..+||+.. ...+|++++||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~--------~~e~Rv~sqlltL~dg~~~--~~~vivl~atn 328 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD--------DVESRVVSQLLTLLDGLKP--DAKVIVLAATN 328 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc--------hHHHHHHHHHHHHHhhCcC--cCcEEEEEecC
Confidence 35688898888764 4 99999999999998554332 1356789999999999864 47799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHH-ccCCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIK-EVNVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~-~~~~tpa~i~~~l~ 421 (449)
+|+.|||++.| ||||..++++.|+..+|.++++.+....++.-..+++.+.. ..+++.+|+...+-
T Consensus 329 rp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 329 RPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred CccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 99999999999 99999999999999999999999998766664455555554 46899999988874
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.3e-25 Score=221.01 Aligned_cols=214 Identities=21% Similarity=0.324 Sum_probs=160.3
Q ss_pred cccCCCCCcccc--cCCHHH-HHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-cEEEEe
Q 013128 200 IVLKHPMTFKTL--ALDSEL-KREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-DIYDLD 275 (449)
Q Consensus 200 ~~~~~p~~f~~l--~g~~~~-k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~~~l~ 275 (449)
....+...|+++ .|.+.. -+-.+.....-.-.|+...++|++.-+|+|||||||||||.+|+.|...|+. +--.++
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN 289 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN 289 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC
Confidence 334555678876 344333 3333444444555789999999999999999999999999999999999975 333344
Q ss_pred cccc------cChHHHHHHHHcCC----------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc
Q 013128 276 LSAV------QSNSELRFLLLTMP----------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 276 ~s~~------~~~~~l~~~~~~~~----------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 339 (449)
.-++ .++.+++.+|..+. .-.||++||||+++..|+.... .......++++||.-|||.
T Consensus 290 GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-----~TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 290 GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-----STGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-----CCCccHHHHHHHHHhcccH
Confidence 3333 35778888888762 3469999999999986655433 2355678899999999999
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC--CCCCHH--HHHHHHHc-cCCCHH
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS--HHYLFE--QIEELIKE-VNVTPA 414 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~--~~~l~~--~i~~l~~~-~~~tpa 414 (449)
..- ++++||+.||+++.||+||+||||+.++++++.|++..|.+|++.+-..- +..+.. ++++++.. .++|.|
T Consensus 365 eqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGA 442 (744)
T KOG0741|consen 365 EQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGA 442 (744)
T ss_pred Hhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchh
Confidence 774 67999999999999999999999999999999999999999998666541 222222 34455443 359999
Q ss_pred HHHHHH
Q 013128 415 EVAGEL 420 (449)
Q Consensus 415 ~i~~~l 420 (449)
||....
T Consensus 443 EleglV 448 (744)
T KOG0741|consen 443 ELEGLV 448 (744)
T ss_pred HHHHHH
Confidence 996554
No 39
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-24 Score=217.71 Aligned_cols=211 Identities=21% Similarity=0.242 Sum_probs=178.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..++..|++++|.+..|+.+.+.+..++.+++.|..+. ++.+|+||.||||||||+|++|+|.+.+..++.+..+++.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 44567899999999999999999999999998887764 45689999999999999999999999999999999988853
Q ss_pred ------hHHHHHHH--HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLL--LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~--~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
+.-++.+| ++..+|+||||||||.++..+... ..+...+...++|..+++..+...+.++||+||
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~-------e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN-------EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc-------ccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 23334443 445689999999999999855222 234556778889999999988877889999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH-HHHHHHHHcc-CCCHHHHHHHHhc
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKEV-NVTPAEVAGELMK 422 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~~l~~ 422 (449)
|.|+.+|.|++| ||...+++|.|+.+.|..+|++++....+.+. .+++.+++-+ +++..||...|..
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 999999999999 99999999999999999999999998866664 6777777654 5999999888864
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-20 Score=185.78 Aligned_cols=223 Identities=22% Similarity=0.225 Sum_probs=161.1
Q ss_pred EEcCCchhHHHHHHHHHHHHHHHHHHHhCceeEEeeecccccc-----ccccccCCCCCcccccCCHHHHHHHHHHHHHH
Q 013128 154 SFHKKHKDVVLNLYLPHVLEKAKAIKEESKVVKLHTVMHMRWD-----ANNIVLKHPMTFKTLALDSELKREITEDLENF 228 (449)
Q Consensus 154 ~~~~~~~~~v~~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~w~-----~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~ 228 (449)
-|.++.-..|.++|++.++-+...|++.++...-|...-.... ...........|+++++.+.+++.|.+....-
T Consensus 295 vYTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aT 374 (630)
T KOG0742|consen 295 VYTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIAT 374 (630)
T ss_pred heeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHh
Confidence 3566777889999999999999999998886533322100000 00011122345999999999999987655443
Q ss_pred HcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-----hHHHHHHHH---cCCCCceEEe
Q 013128 229 MNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-----NSELRFLLL---TMPSRSMLVI 300 (449)
Q Consensus 229 ~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-----~~~l~~~~~---~~~~~~Il~i 300 (449)
.+.+ ....+-|++|+|||||||||+.|+.||.+.|.++-.+..+++.. -..+..+|. +....-+|||
T Consensus 375 aNTK-----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 375 ANTK-----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred cccc-----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEe
Confidence 3322 23455689999999999999999999999999988887777642 233444443 3446779999
Q ss_pred eccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCH
Q 013128 301 EDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNT 380 (449)
Q Consensus 301 DeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~ 380 (449)
||.|+++..++... ..+.....|+.||-- .|-.| ..++++.+||+|.++|.|+-. |+|..|+||.|..
T Consensus 450 DEADAFLceRnkty------mSEaqRsaLNAlLfR-TGdqS---rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGe 517 (630)
T KOG0742|consen 450 DEADAFLCERNKTY------MSEAQRSALNALLFR-TGDQS---RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGE 517 (630)
T ss_pred hhhHHHHHHhchhh------hcHHHHHHHHHHHHH-hcccc---cceEEEeccCCccchhHHHHh--hhhheeecCCCCh
Confidence 99999987554432 123445667776643 23322 457889999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhCc
Q 013128 381 SVFKQLAFNYLGI 393 (449)
Q Consensus 381 ~~r~~l~~~~l~~ 393 (449)
++|..|+..||..
T Consensus 518 EERfkll~lYlnk 530 (630)
T KOG0742|consen 518 EERFKLLNLYLNK 530 (630)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=3.6e-19 Score=165.42 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=130.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
.-+|.+|++++|+++++..+.-.+.......+ .-.++|||||||+||||||+.||++++.++..++...+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~--------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGE--------ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCC--------CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 45899999999999999887655555443222 1357999999999999999999999999999998887877
Q ss_pred hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc-----cCC---------CCe
Q 013128 282 NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS-----CCG---------EGR 347 (449)
Q Consensus 282 ~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~-----~~~---------~~~ 347 (449)
..++..++.....+.|||||||+.+.. ....-|+..|+...- .+. ...
T Consensus 89 ~~dl~~il~~l~~~~ILFIDEIHRlnk------------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 AGDLAAILTNLKEGDILFIDEIHRLNK------------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp CHHHHHHHHT--TT-EEEECTCCC--H------------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHHHHHHHhcCCCcEEEEechhhccH------------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 888999999988999999999999843 223347777763221 111 235
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH-HHHHHHccCCCHHHHHHHH
Q 013128 348 IIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ-IEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 348 iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~~~l 420 (449)
-+|++|++...|.+.|.. ||....++.+.+.++..+|+++.....+..+.++ ..+++....=||.-..++|
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 789999999999999999 9999999999999999999998877777777554 4555566667775443333
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=4.9e-20 Score=159.14 Aligned_cols=123 Identities=33% Similarity=0.488 Sum_probs=99.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC------hHHHHHHHHcC--C-CCceEEeeccchhhhcccccchh
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------NSELRFLLLTM--P-SRSMLVIEDIDCSVKLQNRESSE 316 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------~~~l~~~~~~~--~-~~~Il~iDeiD~l~~~~~~~~~~ 316 (449)
+||+||||||||++|+++|++++.+++.+++..+.+ ...+...+... . .|+||+|||+|.+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~---- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP---- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCST----
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccc----
Confidence 689999999999999999999999999999988862 34555555553 3 4899999999999874411
Q ss_pred hhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCC
Q 013128 317 VQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 317 ~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~ 377 (449)
.........+..|++.++..... +.++++|+|||.++.++++++| +||+..|++|.
T Consensus 77 ---~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 ---SSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp ---SSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ---ccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 12345567788999999987653 3568999999999999999998 89999999874
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=173.75 Aligned_cols=179 Identities=21% Similarity=0.303 Sum_probs=136.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhh-cCCCCcceEEeCCCCCCHHHHHHHHHHHcC---------CcEEEEec
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRI-GRAWKRGYLLYGPPGTGKSSLIAAMANQLK---------FDIYDLDL 276 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---------~~~~~l~~ 276 (449)
-|+.|+.+.++|+++.++....+.-.+.-... -+.|.|-+|||||||||||+|++|+|+.|. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 47889999999999999887766544322221 257788899999999999999999999993 35677887
Q ss_pred ccccC------hHHHHHHHHcC-------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccC
Q 013128 277 SAVQS------NSELRFLLLTM-------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC 343 (449)
Q Consensus 277 s~~~~------~~~l~~~~~~~-------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~ 343 (449)
.++.+ ..-+..+|.+. ..-..++|||++.+...|....+ ...+...-++++.+|..||.+...
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S---~~EpsDaIRvVNalLTQlDrlK~~- 295 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASS---RNEPSDAIRVVNALLTQLDRLKRY- 295 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhc---CCCCchHHHHHHHHHHHHHHhccC-
Confidence 76632 22233333332 23456789999999875533221 123455678899999999999764
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 344 GEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 344 ~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.+++|.+|+|-.+.||-|+.. |-|...++++|+.+++..|++..+.
T Consensus 296 -~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 296 -PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred -CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 678999999999999999999 9999999999999999999988774
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=8.7e-18 Score=168.63 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=143.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+|.+|++++|.++.++.+...+....... ..++++|||||||||||++|+++|++++.++..++...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRG--------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcC--------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 4578899999999999998887775543321 23568999999999999999999999999988887776666
Q ss_pred hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-----cc---------CCCCe
Q 013128 282 NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-----SC---------CGEGR 347 (449)
Q Consensus 282 ~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-----~~---------~~~~~ 347 (449)
...+..++.....++||+|||||.+... ....|.+.|+... .. .-...
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~~------------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSPV------------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcchH------------------HHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 6778888888888999999999987430 0111233333211 00 01236
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH-HHHHHHccCCCHHHHHHHH
Q 013128 348 IIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ-IEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 348 iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~~~l 420 (449)
.+|++||++..++++|.+ ||+..+.+++++.++..+++++..+..+..+.++ +..+++...-+|..+...|
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 789999999999999988 9999999999999999999999888766666543 4555666666665555554
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=1.6e-17 Score=161.41 Aligned_cols=177 Identities=15% Similarity=0.183 Sum_probs=124.6
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCC---CcceEEeCCCCCCHHHHHHHHHHHc-------CCcEEEEecc
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAW---KRGYLLYGPPGTGKSSLIAAMANQL-------KFDIYDLDLS 277 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rg~LL~GPpGtGKT~la~aiA~~l-------~~~~~~l~~s 277 (449)
+++++|.+++|+.|.+.+...... ....+.|... ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999998877555433 3333455543 3458999999999999999999876 2366677766
Q ss_pred cccC------hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 278 AVQS------NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 278 ~~~~------~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
++.. ...+..++..+ .++||||||+|.+.. +.. .......+..|++.|+.. ...+++|+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~~~--------~~~~~~~i~~Ll~~~e~~----~~~~~vil 148 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--GGE--------KDFGKEAIDTLVKGMEDN----RNEFVLIL 148 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--CCc--------cchHHHHHHHHHHHHhcc----CCCEEEEe
Confidence 6532 23445555554 468999999999853 110 112234567788888763 23455666
Q ss_pred EcCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHH
Q 013128 352 TTNHK-----EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQI 402 (449)
Q Consensus 352 tTN~~-----~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i 402 (449)
+++.. ..++|+|.+ ||+.+|++|.++.+++.+++++++...+..+.++.
T Consensus 149 a~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred cCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 55432 247899999 99999999999999999999999976555555443
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=3.9e-17 Score=162.07 Aligned_cols=182 Identities=17% Similarity=0.207 Sum_probs=133.0
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHH
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELR 286 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~ 286 (449)
+|++++|.+++++.+...+......+ ..+.+++||||||||||++++++|++++.++..++.+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999999888776544432 1246799999999999999999999999998877766665556677
Q ss_pred HHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc--------------ccCCCCeEEEEE
Q 013128 287 FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW--------------SCCGEGRIIVFT 352 (449)
Q Consensus 287 ~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--------------~~~~~~~iiI~t 352 (449)
..+.....+.||||||||.+.+. ....|++.|+... .......++|++
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~------------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPA------------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHH------------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 77777778899999999988531 1122344433211 001123788899
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH-HHHHHHccCCCHHHH
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ-IEELIKEVNVTPAEV 416 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i 416 (449)
||++..+++++.+ ||...+.++.++.++..++++...+..+..+.++ +..+++...=+|..+
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchH
Confidence 9999999999998 9999999999999999999998877555555443 344444444444443
No 47
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.75 E-value=8e-17 Score=151.66 Aligned_cols=172 Identities=22% Similarity=0.309 Sum_probs=145.8
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|....|..+++|+|.+.+|+.+.+....|+.+.. .+++||||++|||||++++|+.+++ |..++.++-
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~p---------annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLP---------ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCC---------CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 6677888999999999999999999999998653 5789999999999999999999988 788999999
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
.++..-..+...+...+.+.|||+||+- +. ........|-..|||--...+++++|.+|+|+.
T Consensus 89 ~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe---------------~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 89 EDLGDLPELLDLLRDRPYKFILFCDDLS--FE---------------EGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred HHhccHHHHHHHHhcCCCCEEEEecCCC--CC---------------CCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 9999989999999988999999999964 22 123355778899998887778999999999986
Q ss_pred CCCCc-----------------------cccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 357 EKLDP-----------------------ALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 357 ~~ld~-----------------------aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
..+.. +|-. ||...|.|..|+.++..+|++.++...+..+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 44432 2223 99999999999999999999999977666654
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=4.3e-17 Score=160.18 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=126.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCc-c--eEEeCCCCCCHHHHHHHHHHHcC-------CcEEEEeccc
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKR-G--YLLYGPPGTGKSSLIAAMANQLK-------FDIYDLDLSA 278 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r-g--~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~s~ 278 (449)
++++|.+++|++|.+.+.. +.....+.+.|...+. | +||+||||||||++|+++|+.+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999887644 4455666777775542 3 89999999999999999999862 2577777655
Q ss_pred cc------ChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 279 VQ------SNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 279 ~~------~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
+. +......++..+ .++||||||+|.+...++ . .......+..|+..|+.. ...++||++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~--~-------~~~~~e~~~~L~~~me~~----~~~~~vI~a 167 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDN--E-------RDYGSEAIEILLQVMENQ----RDDLVVIFA 167 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCC--c-------cchHHHHHHHHHHHHhcC----CCCEEEEEe
Confidence 42 222334455543 568999999998854111 0 112345667788888753 245677777
Q ss_pred cCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH
Q 013128 353 TNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ 401 (449)
Q Consensus 353 TN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~ 401 (449)
++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.++
T Consensus 168 g~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred CCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 65421 34699999 9999999999999999999999998765555443
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=3.2e-17 Score=161.06 Aligned_cols=175 Identities=15% Similarity=0.190 Sum_probs=128.1
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCC---CcceEEeCCCCCCHHHHHHHHHHHcC-------CcEEEEecccc
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAW---KRGYLLYGPPGTGKSSLIAAMANQLK-------FDIYDLDLSAV 279 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~s~~ 279 (449)
+++|.+++|++|.+.+.. +..+..+.+.|... ..++||+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999887655 66666777788764 34799999999999999999999873 26788876554
Q ss_pred c------ChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 280 Q------SNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 280 ~------~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
. +......++..+ .++||||||++.+...+. ........+..|++.|+.. ..+++||+++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~---------~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~ 167 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDN---------ERDYGQEAIEILLQVMENQ----RDDLVVILAG 167 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCC---------ccchHHHHHHHHHHHHhcC----CCCEEEEEeC
Confidence 2 223344555544 569999999998853111 0112345667788888753 2456777776
Q ss_pred CCC--C---CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH
Q 013128 354 NHK--E---KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ 401 (449)
Q Consensus 354 N~~--~---~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~ 401 (449)
+.. + .++|+|.+ ||+.+|+||.++.+++..|+.+++......+.++
T Consensus 168 ~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~ 218 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE 218 (284)
T ss_pred CcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH
Confidence 542 2 35899999 9999999999999999999999998765545443
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=1.9e-16 Score=166.78 Aligned_cols=170 Identities=20% Similarity=0.320 Sum_probs=128.5
Q ss_pred cccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 194 RWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
.|.. .++|.+|++++|.++.++.+.+.+..+..+. + ++++|||||||||||++|+++|++++++++.
T Consensus 3 ~W~e----KyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~--------~-~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 3 PWVE----KYRPKTLSDVVGNEKAKEQLREWIESWLKGK--------P-KKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred Cchh----hcCCCCHHHhcCCHHHHHHHHHHHHHHhcCC--------C-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 5754 8899999999999999999999888776422 1 5789999999999999999999999999999
Q ss_pred EecccccChHHHHHHHHcC--------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCC
Q 013128 274 LDLSAVQSNSELRFLLLTM--------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGE 345 (449)
Q Consensus 274 l~~s~~~~~~~l~~~~~~~--------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 345 (449)
++.++..+...+....... ..+.||+|||+|.+.... ....+..|++.++. .
T Consensus 70 lnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------------d~~~~~aL~~~l~~------~ 129 (482)
T PRK04195 70 LNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------------DRGGARAILELIKK------A 129 (482)
T ss_pred EcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------------chhHHHHHHHHHHc------C
Confidence 9998876655454433222 257899999999885311 11234556676653 1
Q ss_pred CeEEEEEcCCCCCCCc-cccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 346 GRIIVFTTNHKEKLDP-ALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 346 ~~iiI~tTN~~~~ld~-aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
...+|+++|.+..+++ .|.+ | ...|+|+.|+.++...+++..+..++..+.
T Consensus 130 ~~~iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~ 181 (482)
T PRK04195 130 KQPIILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECD 181 (482)
T ss_pred CCCEEEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2356778899888877 5554 4 367999999999999999988866554443
No 51
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-16 Score=166.11 Aligned_cols=200 Identities=21% Similarity=0.217 Sum_probs=138.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHH--
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELR-- 286 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~-- 286 (449)
.+..|.+++|++|+++|.--...+. -.+.-++|.||||+|||||+++||..+|..|+.++++.+.++.+++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4678999999999998864433322 2234588999999999999999999999999999999999887765
Q ss_pred -------------HHHHcC-CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc----------
Q 013128 287 -------------FLLLTM-PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC---------- 342 (449)
Q Consensus 287 -------------~~~~~~-~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~---------- 342 (449)
+-+.++ ....+++|||||.+.. +-++. .-+.||..+|--...
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~rGD------------PaSALLEVLDPEQN~~F~DhYLev~ 461 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SFRGD------------PASALLEVLDPEQNNTFSDHYLEVP 461 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccC--CCCCC------------hHHHHHhhcCHhhcCchhhccccCc
Confidence 122222 3577999999999864 22222 224567666622111
Q ss_pred -CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC---CCCCHHHHHHHHHccCCCHHHHHH
Q 013128 343 -CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS---HHYLFEQIEELIKEVNVTPAEVAG 418 (449)
Q Consensus 343 -~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~ 418 (449)
.-..|++|+|+|..+.|+.+|+. ||. .|+++-.+.++..+|+++||-.. .|-|.. .+..++..-| .
T Consensus 462 yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~------~el~i~d~ai-~ 531 (782)
T COG0466 462 YDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK------GELTITDEAI-K 531 (782)
T ss_pred cchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCc------cceeecHHHH-H
Confidence 01468999999999999999999 995 59999999999999999998532 111110 1122443333 4
Q ss_pred HHhcCCCHHHHHHHHHHHHHH
Q 013128 419 ELMKSTNAEVSLNGLVKFLHA 439 (449)
Q Consensus 419 ~l~~~~~~~~al~~l~~~l~~ 439 (449)
.+++....+..+++|.+.+..
T Consensus 532 ~iI~~YTREAGVR~LeR~i~k 552 (782)
T COG0466 532 DIIRYYTREAGVRNLEREIAK 552 (782)
T ss_pred HHHHHHhHhhhhhHHHHHHHH
Confidence 445545555555555555543
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=3.2e-16 Score=173.56 Aligned_cols=159 Identities=23% Similarity=0.215 Sum_probs=116.3
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChH------
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNS------ 283 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~------ 283 (449)
+++|.+++|+.|.+.+....... ...+.++||+||||||||++|+++|+.++.+++.++++.+.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 47899999999988776443221 22234799999999999999999999999999999877654322
Q ss_pred ---------HHHHHHHcC-CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc----cc-------c
Q 013128 284 ---------ELRFLLLTM-PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL----WS-------C 342 (449)
Q Consensus 284 ---------~l~~~~~~~-~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~----~~-------~ 342 (449)
.+...+... ..+.||+|||||.+... .++ ...+.||..+|.. .. .
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~--~~~------------~~~~aLl~~ld~~~~~~f~d~~~~~~~ 459 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS--FRG------------DPASALLEVLDPEQNNAFSDHYLDVPF 459 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc--cCC------------CHHHHHHHhcCHHhcCccccccCCcee
Confidence 233344432 34559999999998641 111 1234567766631 00 0
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 343 CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 343 ~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
...++++|+|||.++.++++|++ ||+ .|+|+.++.+++.+|+++|+.
T Consensus 460 d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 460 DLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred ccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 11467899999999999999999 995 689999999999999999883
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=4.1e-16 Score=147.90 Aligned_cols=192 Identities=18% Similarity=0.218 Sum_probs=150.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
.-+|.+|++.+|.+++|+.+.=.+.....+.+ ..-++|||||||.||||||..||+++|.++-..+...+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 45789999999999999988777666555443 2357999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc----------cc----CCCCe
Q 013128 282 NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW----------SC----CGEGR 347 (449)
Q Consensus 282 ~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~----------~~----~~~~~ 347 (449)
...+..++.......|||||||+.+.+. +-.-|...|+.+. +. .-...
T Consensus 91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~~------------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 PGDLAAILTNLEEGDVLFIDEIHRLSPA------------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hhhHHHHHhcCCcCCeEEEehhhhcChh------------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 9999999999999999999999998541 1111334444211 10 00235
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH-HHHHHHHccCCCHHHHHHHHhc
Q 013128 348 IIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE-QIEELIKEVNVTPAEVAGELMK 422 (449)
Q Consensus 348 iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~i~~~l~~ 422 (449)
-+|++|.+...|...|.. ||.+..++.+.+.++..+|+.+.-..-+..+.+ ...+++.+..=||. |+..|++
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR-IAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR-IANRLLR 225 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH-HHHHHHH
Confidence 789999999999999998 999999999999999999999988776666644 45566666777774 5555553
No 54
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.1e-16 Score=162.73 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=138.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHH--
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELR-- 286 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~-- 286 (449)
++..|+.++|++|++.+.--.- .|...+.-++|+||||+|||+++++||..||..|+.++.+.+.+..+++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5678999999999998752211 1233345688999999999999999999999999999999887654443
Q ss_pred -------------HHHHcC-CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc----------
Q 013128 287 -------------FLLLTM-PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC---------- 342 (449)
Q Consensus 287 -------------~~~~~~-~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~---------- 342 (449)
+.+... ...-+++|||||.+.. +-+++. -+.||..+|--...
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g~qGDP------------asALLElLDPEQNanFlDHYLdVp 549 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--GHQGDP------------ASALLELLDPEQNANFLDHYLDVP 549 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--CCCCCh------------HHHHHHhcChhhccchhhhccccc
Confidence 333333 3577999999999862 222221 23355444421110
Q ss_pred -CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC---CCCCHHHHHHHHHccCCCHHHHHH
Q 013128 343 -CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS---HHYLFEQIEELIKEVNVTPAEVAG 418 (449)
Q Consensus 343 -~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~ 418 (449)
.-..+++|+|.|..+.|+++|+. ||.+ |+++=...++...|+.+||-.. ++-+.++ ...++-+- ..
T Consensus 550 ~DLSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e------~v~is~~a-l~ 619 (906)
T KOG2004|consen 550 VDLSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPE------QVKISDDA-LL 619 (906)
T ss_pred cchhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHH------hcCccHHH-HH
Confidence 01468999999999999999999 9965 9999999999999999998542 2222211 11233222 24
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 013128 419 ELMKSTNAEVSLNGLVKFLHAK 440 (449)
Q Consensus 419 ~l~~~~~~~~al~~l~~~l~~~ 440 (449)
.|++....+..+++|++.++.-
T Consensus 620 ~lI~~YcrEaGVRnLqk~iekI 641 (906)
T KOG2004|consen 620 ALIERYCREAGVRNLQKQIEKI 641 (906)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 4555556677777777766653
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.9e-16 Score=156.65 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=110.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN 282 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~ 282 (449)
-+|.++++++|++.+... -..|...+... .-.+++|||||||||||+|+.||+..+.+|..++...- +.
T Consensus 18 mRP~~lde~vGQ~HLlg~-~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gv 86 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGE-GKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GV 86 (436)
T ss_pred hCCCCHHHhcChHhhhCC-CchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cH
Confidence 479999999998876532 11222222222 24579999999999999999999999999999975432 33
Q ss_pred HHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE-Ec-C
Q 013128 283 SELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF-TT-N 354 (449)
Q Consensus 283 ~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~-tT-N 354 (449)
.+++..+.++ .+..|||||||+.+-. . ....||..++. +.+++|+ || |
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----~--------------QQD~lLp~vE~------G~iilIGATTEN 142 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNK----A--------------QQDALLPHVEN------GTIILIGATTEN 142 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----h--------------hhhhhhhhhcC------CeEEEEeccCCC
Confidence 4566555544 3589999999999842 1 22348888863 4567776 44 4
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
..-.|.+||++ |. ..+.+...+.++.++++++-+..
T Consensus 143 PsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 143 PSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred CCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhh
Confidence 45689999999 66 45889999999999999984443
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.2e-15 Score=159.16 Aligned_cols=157 Identities=19% Similarity=0.329 Sum_probs=115.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+. ... .+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----KNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 5789999999999988776655433 221 2467999999999999999999999864
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.+.-.....++.+.... ....||+|||+|.+.. ..+..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------------~a~~~ 136 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------------EAFNA 136 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------------HHHHH
Confidence 57777765433334444433222 2457999999998842 23466
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
||..++.. +..+++|++|+.+..+++++.+ |+ ..+++..++.++...+++..+..++
T Consensus 137 LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 137 LLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred HHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcC
Confidence 88888753 3457777777788899999998 77 4699999999998888887765443
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=7e-16 Score=162.88 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=123.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
.++|.+|++|+|.+.+++.|.+.+.. . ..+..|||+||+|||||++++.+|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~----g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ----Q--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh----C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 67999999999999998877766541 1 12467999999999999999999999975
Q ss_pred -----------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhH
Q 013128 270 -----------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENK 326 (449)
Q Consensus 270 -----------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~ 326 (449)
+++.++..+-..-.+++.++... ....|+||||+|.+..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------------ 138 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------------ 138 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------------
Confidence 45666655433344555554432 2457999999998842
Q ss_pred HHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 327 VTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 327 ~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
...+.||..|+.- ...+++|++||.+++|.+.+++ |+ .++.|..++.++..+.++.++..++....
T Consensus 139 ~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d 204 (700)
T PRK12323 139 HAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHE 204 (700)
T ss_pred HHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCC
Confidence 3457788888763 4567899999999999999998 87 67999999999999988888776554443
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.4e-15 Score=156.92 Aligned_cols=159 Identities=16% Similarity=0.298 Sum_probs=117.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+.+.+...+. .. ..+..|||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----SG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 6799999999999988887665543 11 12356999999999999999999999975
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++...-.....++.+.... ....|+||||+|.+.. ..++.
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------------~A~NA 140 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------------QSFNA 140 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH------------------HHHHH
Confidence 35555553322233344332221 2456999999998842 35677
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
||..|+.. ...+++|++|+.++.|.+++++ |+ .++.|..++.++..+.++..+..++..
T Consensus 141 LLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~ 199 (484)
T PRK14956 141 LLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQ 199 (484)
T ss_pred HHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 88888752 4578889999999999999999 88 468899999988888888877655433
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=1.9e-15 Score=151.14 Aligned_cols=163 Identities=14% Similarity=0.195 Sum_probs=116.3
Q ss_pred cccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-----
Q 013128 194 RWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK----- 268 (449)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----- 268 (449)
+|.. .++|.+|++++|.+++.+.+...+. ... ..++|||||||||||++|+++|+++.
T Consensus 2 ~w~~----kyrP~~l~~~~g~~~~~~~L~~~~~----~~~---------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~ 64 (319)
T PLN03025 2 PWVE----KYRPTKLDDIVGNEDAVSRLQVIAR----DGN---------MPNLILSGPPGTGKTTSILALAHELLGPNYK 64 (319)
T ss_pred Chhh----hcCCCCHHHhcCcHHHHHHHHHHHh----cCC---------CceEEEECCCCCCHHHHHHHHHHHHhcccCc
Confidence 4755 8899999999999988777655432 211 23699999999999999999999982
Q ss_pred CcEEEEecccccChHHHHHHH---HcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc
Q 013128 269 FDIYDLDLSAVQSNSELRFLL---LTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 269 ~~~~~l~~s~~~~~~~l~~~~---~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 339 (449)
..++.++.++......++..+ ... ....|++|||+|.+.. ...+.|+..|+..
T Consensus 65 ~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------------~aq~aL~~~lE~~ 126 (319)
T PLN03025 65 EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------------GAQQALRRTMEIY 126 (319)
T ss_pred cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------------HHHHHHHHHHhcc
Confidence 346677766654433444332 211 2467999999999843 1234466666542
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
+....+|+++|....+.++|.+ |+ ..++|+.|+.++....++..+..++..+
T Consensus 127 ----~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i 178 (319)
T PLN03025 127 ----SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPY 178 (319)
T ss_pred ----cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2334677888999999999998 76 4699999999999888888776655444
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.1e-15 Score=161.16 Aligned_cols=161 Identities=18% Similarity=0.290 Sum_probs=122.4
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-----------
Q 013128 201 VLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF----------- 269 (449)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------- 269 (449)
..++|.+|++|+|.+.+++.|...+. .. ..+..|||+||+|||||++++++|+.+++
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~----~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD----GG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 36799999999999998887766543 11 12467999999999999999999999864
Q ss_pred -------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHH
Q 013128 270 -------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLS 330 (449)
Q Consensus 270 -------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls 330 (449)
+++.++..+-....+++.++... ....|+||||+|.+.. ...+
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------------~A~N 137 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------------HAFN 137 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------------HHHH
Confidence 46666655433344555554432 2457999999998842 2456
Q ss_pred HHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 331 GLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 331 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
.||..|+.. ...+++|++||++++|.+.+++ |+ .++.|..++.++..+.++..++.++..+
T Consensus 138 ALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~i 198 (830)
T PRK07003 138 AMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAF 198 (830)
T ss_pred HHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 788888763 3568899999999999999998 87 6799999999999999988887654433
No 61
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=5e-15 Score=147.72 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=116.0
Q ss_pred cccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 192 HMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
...|.. .++|.+|++++|.++.++.+...+. . | ..+..+||+||||+|||++++++|++++.++
T Consensus 8 ~~~w~~----kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 8 EFMWEQ----KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCccee----ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 346855 8899999999999999888776654 1 1 1245677799999999999999999999999
Q ss_pred EEEecccccChHHHHH----HHHcC---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC
Q 013128 272 YDLDLSAVQSNSELRF----LLLTM---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG 344 (449)
Q Consensus 272 ~~l~~s~~~~~~~l~~----~~~~~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 344 (449)
+.++++. .....++. ..... ..+.||+|||+|.+.. .. ....|...++.. .
T Consensus 72 ~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~---~~~~L~~~le~~----~ 129 (316)
T PHA02544 72 LFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------AD---AQRHLRSFMEAY----S 129 (316)
T ss_pred eEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------HH---HHHHHHHHHHhc----C
Confidence 9999887 22222222 11111 3678999999998721 01 122344455543 2
Q ss_pred CCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 345 EGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 345 ~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
....+|+|||.+..+++++.+ |+. .+.++.|+.+++..++..++
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 456788899999999999998 884 68999999999887776543
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.1e-15 Score=158.36 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=122.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+. .. ..+.+|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~----~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE----RG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 5789999999999999888776654 11 12468999999999999999999999864
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.++-..-..++.++... .+..|++|||+|.+.. ...+.
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------------~A~NA 137 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------------HSFNA 137 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------------HHHHH
Confidence 56777766444445566555433 2456999999998742 24566
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..|+.. ...+.+|++|+.+..+.+.+++ |+ .+++|..++.++....+...+..++...
T Consensus 138 LLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~i 197 (702)
T PRK14960 138 LLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAA 197 (702)
T ss_pred HHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 88888753 3557888888889999989887 77 5799999999998888888877655444
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.3e-15 Score=149.87 Aligned_cols=160 Identities=16% Similarity=0.264 Sum_probs=116.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+..++.+...+.. . ..+..|||+||||||||++|+++|+.++.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~----~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL----G--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc----C--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 57899999999999988877655431 1 12467999999999999999999999852
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.++-.....++.+.... ....|++|||+|.+.. ...+.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------------~a~na 138 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------------HSFNA 138 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------------HHHHH
Confidence 45555544322333444444332 2356999999998742 23456
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..++.. +..+.+|++|+.++.+.+++.+ |+ ..++++.++.++....+...+..++..+
T Consensus 139 LLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i 198 (363)
T PRK14961 139 LLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDT 198 (363)
T ss_pred HHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 88888753 3456778888888999999987 77 6799999999999988888776554434
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=8.8e-15 Score=153.44 Aligned_cols=166 Identities=17% Similarity=0.267 Sum_probs=122.1
Q ss_pred cccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC--
Q 013128 192 HMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-- 269 (449)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-- 269 (449)
+..|.. ..+|.+|++++|.+.+.+.+...+. .+ ..+.++||+||||||||++|+++|+.++.
T Consensus 8 y~~la~----kyRP~~f~dliGq~~vv~~L~~ai~---~~---------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 8 YIPFAR----KYRPSNFAELQGQEVLVKVLSYTIL---ND---------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred ccchhh----hhCCCCHHHhcCcHHHHHHHHHHHH---cC---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 345654 7899999999999988876655432 11 12468999999999999999999999854
Q ss_pred --------------------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhh
Q 013128 270 --------------------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEV 317 (449)
Q Consensus 270 --------------------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~ 317 (449)
+++.++..+-.....++.++... ....|++|||+|.+..
T Consensus 72 ~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------- 142 (507)
T PRK06645 72 LITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------- 142 (507)
T ss_pred ccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------
Confidence 44555544333345555554443 2467999999998732
Q ss_pred hhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 318 ~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
..++.||..|+.. +..+++|++|+.++.+++++.+ |+ ..++|..++.++....++..+..++..
T Consensus 143 ---------~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 143 ---------GAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred ---------HHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3456788888752 4567888888899999999988 77 578999999999999998888765443
Q ss_pred C
Q 013128 398 L 398 (449)
Q Consensus 398 l 398 (449)
.
T Consensus 207 i 207 (507)
T PRK06645 207 T 207 (507)
T ss_pred C
Confidence 3
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=1.2e-14 Score=147.16 Aligned_cols=161 Identities=19% Similarity=0.325 Sum_probs=118.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK------------- 268 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------------- 268 (449)
..+|.+|++++|.+..++.+.+.+.. | ..+..+|||||||+|||++++++|+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 67899999999999998888776532 1 1246799999999999999999999974
Q ss_pred -----------CcEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 269 -----------FDIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
.+++.++.........++.++... ..+.|++|||+|.+.. ...+.
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------------~~~~~ 136 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------------SAFNA 136 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------------HHHHH
Confidence 235555554333333344444432 2456999999998732 23566
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
|+..++.. +...++|++|++++.+.+++.+ |+ ..++++.|+.++...++..++...+..+.
T Consensus 137 Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~ 197 (355)
T TIGR02397 137 LLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIE 197 (355)
T ss_pred HHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 88888753 3567788888999999999988 77 56899999999999999887766554443
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=3.7e-15 Score=164.32 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEE
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYD 273 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 273 (449)
+|-.+|+++|.++....+++.|. +. .+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~----~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC----RR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh----cC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 56789999999988887665542 11 25789999999999999999999998 788999
Q ss_pred EecccccC--------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccC
Q 013128 274 LDLSAVQS--------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC 343 (449)
Q Consensus 274 l~~s~~~~--------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~ 343 (449)
++++.+.. +..++.++... ..++||||||||.+.+.+...+.. ....+-|+..+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~---------~~~~~~L~~~l~------ 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS---------MDASNLLKPALS------ 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc---------HHHHHHHHHHHh------
Confidence 99877643 24667777654 358999999999998643211110 111223445553
Q ss_pred CCCeEEEEEcCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 344 GEGRIIVFTTNHK-----EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 344 ~~~~iiI~tTN~~-----~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
.+.+.+|++||.. -.+|+||.| ||. .|+++.|+.+++.+|++.....
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 2467888888864 357999999 997 6999999999999999976653
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=99.61 E-value=1.1e-14 Score=138.87 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=105.6
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+....+.+||++++.++.. ....+..... ....+.++||||||||||+|++|+|+++ +.....+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~~~~---------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRKNFI---------DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHHHhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 5567788999998765431 2222221111 1113458999999999999999999997 445566655
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc-CC
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT-NH 355 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT-N~ 355 (449)
+.... .....+....+..+|+||||+.+.+. ...... |++.++.... .+..++|.|+ ..
T Consensus 76 ~~~~~--~~~~~~~~~~~~dlLilDDi~~~~~~-------------~~~~~~---l~~l~n~~~~--~~~~illits~~~ 135 (229)
T PRK06893 76 SKSQY--FSPAVLENLEQQDLVCLDDLQAVIGN-------------EEWELA---IFDLFNRIKE--QGKTLLLISADCS 135 (229)
T ss_pred HHhhh--hhHHHHhhcccCCEEEEeChhhhcCC-------------hHHHHH---HHHHHHHHHH--cCCcEEEEeCCCC
Confidence 43211 11234455567789999999987531 111122 4444443322 1234545554 45
Q ss_pred CCCCC---ccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH
Q 013128 356 KEKLD---PALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE 400 (449)
Q Consensus 356 ~~~ld---~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~ 400 (449)
|..++ |+|.++.+.+..+.++.|+.+++.+++++.....+..+.+
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~ 183 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSD 183 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 65554 8899855556889999999999999999877544444433
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1e-14 Score=151.91 Aligned_cols=160 Identities=15% Similarity=0.228 Sum_probs=122.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc--------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-------------- 267 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-------------- 267 (449)
.++|.+|++++|.+.+++.+...+. .. ..+.++||+||||||||++|+.+|+.+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~----~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT----LN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 6789999999999988876654432 11 125689999999999999999999875
Q ss_pred ----------CCcEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 268 ----------KFDIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 268 ----------~~~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+.+++.++.++-.+...++.++... ...-|++|||+|.+.. ..++.
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------------~A~Na 135 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------------SAFNA 135 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------------HHHHH
Confidence 2467888877655555666555443 2467999999998742 35677
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..|+.. +..+++|++|+.++++.+.+++ |+ ..++|..++.++....+...+..++..+
T Consensus 136 LLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i 195 (491)
T PRK14964 136 LLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEH 195 (491)
T ss_pred HHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCC
Confidence 89998863 4567888888999999999998 77 5689999999998888888776655444
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.2e-15 Score=154.46 Aligned_cols=159 Identities=17% Similarity=0.288 Sum_probs=119.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+..|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~----~--------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ----Q--------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh----C--------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 67999999999999998887766632 1 12457999999999999999999999964
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++..+-..-..++.++... .+..|++|||+|.+.. ...+.
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------------~a~na 138 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------------HSFNA 138 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------------HHHHH
Confidence 36777765544445566555432 2346999999998843 24567
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
||..|+.. ++.+++|++|+.+.++.+.+++ |+ ..++|..++.++....++..+..++..
T Consensus 139 LLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 139 LLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred HHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 88888763 4567888888899999989988 76 568899998888777777777655443
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.61 E-value=1.2e-14 Score=150.23 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=110.7
Q ss_pred cCCCCCcccccCCHHHHHH---HHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc
Q 013128 202 LKHPMTFKTLALDSELKRE---ITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA 278 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~---i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 278 (449)
..+|.+|++++|.++.... +...+ ... ...++||+||||||||++|+++|+.++.+++.++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i----~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMI----EAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHH----HcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 6789999999999887554 44443 221 1357999999999999999999999999999998764
Q ss_pred ccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 279 VQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 279 ~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
.. ...++.++... ..+.||||||+|.+.. .....|+..++. ..+++|++
T Consensus 72 ~~-~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------------~~q~~LL~~le~------~~iilI~a 126 (413)
T PRK13342 72 SG-VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------------AQQDALLPHVED------GTITLIGA 126 (413)
T ss_pred cc-HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------------HHHHHHHHHhhc------CcEEEEEe
Confidence 32 23344433332 2678999999998742 123446777653 23566655
Q ss_pred c--CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 353 T--NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 353 T--N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
| |....++++|++ |+ ..+.++.++.++...+++..+..
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4 334689999999 87 67899999999999999987754
No 71
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.60 E-value=5.3e-14 Score=130.63 Aligned_cols=174 Identities=20% Similarity=0.302 Sum_probs=144.0
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+...+|..+.+|+|.+.+|+.+.+....|+.+.. -+++||+|..|||||||++|+-+++ +..++.|+-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~p---------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLP---------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCc---------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 6666778899999999999999999999998653 5789999999999999999999998 678999999
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
.++.+-..+...+...+.+.|||+||+-- . ........|-..+||--...+.+|+|.+|+|+.
T Consensus 122 ~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF--e---------------~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 122 EDLATLPDLVELLRARPEKFILFCDDLSF--E---------------EGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHhhHHHHHHHHhcCCceEEEEecCCCC--C---------------CCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 99998889999999999999999999742 1 122345567888998877778899999999987
Q ss_pred CCCCcccc--------------------CCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 357 EKLDPALL--------------------RPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 357 ~~ld~aLl--------------------rpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
..|+.... -..||+.-+.|+.|+.++..+|+..|....+..+.
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~ 247 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDIS 247 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 65542111 12399999999999999999999999976655553
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.7e-14 Score=154.08 Aligned_cols=160 Identities=17% Similarity=0.289 Sum_probs=120.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
.++|.+|++|+|.+.+++.+...+.. . ..+.+|||+||||||||++|+++|+.++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~----~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE----G--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 67899999999999998887776542 1 12568999999999999999999998753
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++..+-.....++.++... ....|+||||+|.+.. ..++.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------------~A~NA 138 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------------SAFNA 138 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------------HHHHH
Confidence 34555544433444566555432 3457999999997632 24567
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..|+.. .+.+++|++|+.+..+.+.+++ |+ ..+.|+.++.++....++..+..++..+
T Consensus 139 LLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~i 198 (709)
T PRK08691 139 MLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAY 198 (709)
T ss_pred HHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 88888753 3457888888999999999886 87 6788999999999999988887665444
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.3e-14 Score=155.90 Aligned_cols=159 Identities=19% Similarity=0.283 Sum_probs=116.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc-----------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD----------- 270 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 270 (449)
..+|.+|++++|.+.+++.+...+. .. ..+..|||+||||||||++|+++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----QQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----hC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 5789999999999998887765543 11 125678999999999999999999999653
Q ss_pred -------------EEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 271 -------------IYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 271 -------------~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
++.++..+-.....++.+.... ....|+||||+|.+.. ..++.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~------------------eAqNA 138 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR------------------SSFNA 138 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH------------------HHHHH
Confidence 2333333222223344443322 2456999999999842 35678
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
||..|+.. +..+++|++|+.+..|.+.++. |+ .+++|..++.++....+++.+..++..
T Consensus 139 LLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~ 197 (944)
T PRK14949 139 LLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLP 197 (944)
T ss_pred HHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999863 4557778888889999999998 77 679999999999998888877654433
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=152.87 Aligned_cols=161 Identities=17% Similarity=0.261 Sum_probs=119.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
.++|.+|++++|.+.+++.+...+. .. ..+..|||+||+|||||++|+++|+.++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~----~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT----QQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 6789999999999888877666543 11 12467999999999999999999999864
Q ss_pred -----------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhH
Q 013128 270 -----------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENK 326 (449)
Q Consensus 270 -----------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~ 326 (449)
+++.++..+-..-..++.++... ...-|++|||+|.+..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------------ 138 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------------ 138 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH------------------
Confidence 35555554333334555555432 1346999999999843
Q ss_pred HHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 327 VTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 327 ~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
...+.||..++.. ++.+++|++|+.+.++.+.+++ |+ .+++|..++.++....++..+..++....
T Consensus 139 ~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie 204 (618)
T PRK14951 139 TAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAE 204 (618)
T ss_pred HHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2466788888753 4567888888889999989888 76 67999999999988888887766554443
No 75
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.9e-14 Score=151.16 Aligned_cols=160 Identities=16% Similarity=0.275 Sum_probs=120.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK------------- 268 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------------- 268 (449)
..+|.+|++++|.+.+++.+...+.. . ..++.||||||+|||||++|+.+|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ----G--------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 56899999999999988877766542 1 1256799999999999999999999984
Q ss_pred -----------CcEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 269 -----------FDIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
.+++.++.++-..-..++.+.... ...-|++|||+|.+.. ...+.
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------------~a~na 138 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------------GAFNA 138 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------------HHHHH
Confidence 466777765444444555554442 2457999999998742 24667
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..++.. +..+++|++|+.++.+.+.+++ |+ ..+.|+.++.++....+...+..++..+
T Consensus 139 LLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i 198 (559)
T PRK05563 139 LLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEY 198 (559)
T ss_pred HHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 88888764 4567888888889999999988 77 4688999999998888888776554444
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.58 E-value=1.8e-14 Score=153.04 Aligned_cols=189 Identities=20% Similarity=0.268 Sum_probs=128.7
Q ss_pred cccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc------
Q 013128 194 RWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL------ 267 (449)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------ 267 (449)
+|.. ..+|.+|++++|.+...+.+...+ .. +.+.++||+||||||||++|+++++++
T Consensus 54 ~~~~----~~rp~~f~~iiGqs~~i~~l~~al----~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s 116 (531)
T TIGR02902 54 PLSE----KTRPKSFDEIIGQEEGIKALKAAL----CG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPAS 116 (531)
T ss_pred hHHH----hhCcCCHHHeeCcHHHHHHHHHHH----hC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 5655 678999999999998887776432 11 124689999999999999999998753
Q ss_pred ----CCcEEEEeccccc-ChHHHH-HH--------------------------HHcCCCCceEEeeccchhhhcccccch
Q 013128 268 ----KFDIYDLDLSAVQ-SNSELR-FL--------------------------LLTMPSRSMLVIEDIDCSVKLQNRESS 315 (449)
Q Consensus 268 ----~~~~~~l~~s~~~-~~~~l~-~~--------------------------~~~~~~~~Il~iDeiD~l~~~~~~~~~ 315 (449)
+.+++.++|+... ++..+. .+ .......++|||||||.+..
T Consensus 117 ~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~------- 189 (531)
T TIGR02902 117 PFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP------- 189 (531)
T ss_pred CcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-------
Confidence 3578999986421 111110 00 01122458999999999853
Q ss_pred hhhhccchhhHHHHHHHHHHhcCc--------ccc-----------------CCCCeEEEEEcCCCCCCCccccCCCccc
Q 013128 316 EVQATNQEENKVTLSGLLNFIDGL--------WSC-----------------CGEGRIIVFTTNHKEKLDPALLRPGRMD 370 (449)
Q Consensus 316 ~~~~~~~~~~~~~ls~LL~~ldg~--------~~~-----------------~~~~~iiI~tTN~~~~ld~aLlrpgR~d 370 (449)
...+.||..|+.- ... .-+-++|++|||.++.|+|++++ |+
T Consensus 190 -----------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~- 255 (531)
T TIGR02902 190 -----------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC- 255 (531)
T ss_pred -----------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-
Confidence 2334455555321 000 11236677788999999999999 87
Q ss_pred eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHccCCCHHHHHHHH
Q 013128 371 MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 371 ~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l 420 (449)
..|.|+.++.+++..++++.+...+..+.++..+++....++.+++.+.+
T Consensus 256 ~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~nll 305 (531)
T TIGR02902 256 VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIV 305 (531)
T ss_pred heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHHHH
Confidence 57889999999999999999887666666665555555555666655544
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.3e-14 Score=148.74 Aligned_cols=160 Identities=20% Similarity=0.320 Sum_probs=117.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+++++.+...+.. . ..+..+|||||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~----~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ----G--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 56899999999999988877766542 1 12456899999999999999999999852
Q ss_pred -----------cEEEEecccccChHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHH
Q 013128 270 -----------DIYDLDLSAVQSNSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGL 332 (449)
Q Consensus 270 -----------~~~~l~~s~~~~~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~L 332 (449)
+++.++.+.-.....++.+... ...+.|+||||+|.+. ...++.|
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------------~~a~naL 136 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------------KSAFNAL 136 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------------HHHHHHH
Confidence 3666665533333334433222 1356799999999763 1346778
Q ss_pred HHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 333 LNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 333 L~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
+..++.. +...++|++||.+..+.+++.+ |+ .+++|+.++.++....+...+..++...
T Consensus 137 Lk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i 195 (504)
T PRK14963 137 LKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREA 195 (504)
T ss_pred HHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 8888753 3457888888999999999988 76 4799999999999998888776554433
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.2e-14 Score=152.40 Aligned_cols=157 Identities=18% Similarity=0.309 Sum_probs=118.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+..|||+||+|||||++|+++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~----~--------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL----G--------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 56899999999999988877655531 1 12456999999999999999999999965
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.++-.....++.+.... ...-|+||||+|.+.. ...+.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------------~a~NA 138 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------------HSFNA 138 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------------HHHHH
Confidence 45556654322334455444332 2456999999998842 35677
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
||..|+.. ++.+++|++|+.+..|.+.+++ |+ .+++|..++.++....+.+.+..++
T Consensus 139 LLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 139 LLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred HHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 99998863 4567888888899999999998 86 7899999999999988888775443
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3e-14 Score=157.03 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=118.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
.++|.+|++|+|.+.+++.|...+.. . .....|||+||+|||||++|+.+|+.|++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~----~--------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS----G--------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh----C--------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 67999999999999988877665531 1 12457999999999999999999999953
Q ss_pred --------------cEEEEecccccChHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHH
Q 013128 270 --------------DIYDLDLSAVQSNSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTL 329 (449)
Q Consensus 270 --------------~~~~l~~s~~~~~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~l 329 (449)
+++.++..+......++.+... .....|+||||+|.+.. ...
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------------~a~ 137 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------------QGF 137 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH------------------HHH
Confidence 3555554333333444443221 13567999999999842 345
Q ss_pred HHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 330 SGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 330 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
+.||..|+.. ...+++|++|+.+++|-+.|+. |+ .++.|..++.++...++...+..++..
T Consensus 138 NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 138 NALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred HHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 6789999864 4567888888999999999988 76 678999999999988888887655443
No 80
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.7e-14 Score=150.61 Aligned_cols=192 Identities=15% Similarity=0.222 Sum_probs=131.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC----CcEEEEecccccCh--
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK----FDIYDLDLSAVQSN-- 282 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~s~~~~~-- 282 (449)
.+++..+..|+...++...+ +....++||+||+|||||.|++++++++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45566666666655433222 23346799999999999999999999985 45567888887543
Q ss_pred HH----HHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 283 SE----LRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 283 ~~----l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
.. +...|... .+|+||++||+|+++...+.++. ........+..+|+.+-..+...+..+.+|+|.+..
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~-----q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~ 551 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENG-----QDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL 551 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCC-----cchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh
Confidence 22 23333333 48999999999999872222211 122333445556654433333334557889999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC-CCCHHHHHHHHHc-cCCCHHHH
Q 013128 357 EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH-HYLFEQIEELIKE-VNVTPAEV 416 (449)
Q Consensus 357 ~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~-~~l~~~i~~l~~~-~~~tpa~i 416 (449)
..|+|-|..|++|+.++.+|.|...+|.+|++.++.... ...+++++-+..+ .++.+.|+
T Consensus 552 qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 552 QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred hhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhH
Confidence 999999999999999999999999999999999887542 2334555554333 35666666
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.57 E-value=1.1e-14 Score=139.57 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=117.0
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC---
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--- 269 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--- 269 (449)
..|.. .++|.+|++++|++.+.+.+...+.. -. -..||||||||||||+.|++.|.+++.
T Consensus 24 ~swte----KYrPkt~de~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~ 86 (346)
T KOG0989|consen 24 RSWTE----KYRPKTFDELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQL 86 (346)
T ss_pred cchHH----HhCCCcHHhhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCccc
Confidence 35654 88999999999999999988887754 11 247999999999999999999999965
Q ss_pred ---cEEEEecccccChHH-------HHHHHHcC----C----CCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ---DIYDLDLSAVQSNSE-------LRFLLLTM----P----SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ---~~~~l~~s~~~~~~~-------l~~~~~~~----~----~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
.+..++.+.....+- ...+.... . ..-|++|||.|.+.. ...+.
T Consensus 87 ~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------------daq~a 148 (346)
T KOG0989|consen 87 FPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------------DAQAA 148 (346)
T ss_pred cccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH------------------HHHHH
Confidence 233444444322211 11111111 1 125999999998853 35677
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
|...||.. .....+|+.||..+.|.+.+.. |.. .+.|+....+....-++.....++....
T Consensus 149 Lrr~mE~~----s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 149 LRRTMEDF----SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred HHHHHhcc----ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 88889873 2457889999999999999998 884 4778887777666666666665555443
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.2e-14 Score=150.51 Aligned_cols=157 Identities=18% Similarity=0.323 Sum_probs=116.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK------------- 268 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------------- 268 (449)
..+|.+|++++|.+.+++.+...+.. | ..+++|||+||||||||++|+++|+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 67999999999999988777665421 1 1246899999999999999999999984
Q ss_pred -----------CcEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 269 -----------FDIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
.+++.++.++......++.+.... ....|++|||+|.+.. ...+.
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------------~A~Na 138 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------------SAWNA 138 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------------HHHHH
Confidence 255666654433334455443322 2456999999998732 13467
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
||..|+.. +...++|++|+.+..|.+++++ |+. .++|+.++.++....+...+..++
T Consensus 139 LLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 139 LLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred HHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcC
Confidence 88888763 4567888888899999999998 774 699999999998888887765544
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8.4e-14 Score=141.94 Aligned_cols=160 Identities=18% Similarity=0.313 Sum_probs=115.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+..++.+.+.+.. . ..+.++|||||||+|||++++++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~----~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN----N--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 67899999999999988777666542 1 12568999999999999999999998743
Q ss_pred cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccC
Q 013128 270 DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC 343 (449)
Q Consensus 270 ~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~ 343 (449)
+++.++.........++.++... ..+.|++|||+|.+.. ..++.|+..++..
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------------~~~~~ll~~le~~---- 135 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------------AAFNAFLKTLEEP---- 135 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------------HHHHHHHHHHhCC----
Confidence 33444433323334555555432 2457999999997642 2356688888753
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 344 GEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 344 ~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
+...++|++|+.+..+.+++.+ |+ ..++++.++.++...++...+..++..+
T Consensus 136 ~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i 187 (367)
T PRK14970 136 PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKF 187 (367)
T ss_pred CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCC
Confidence 3456777788888999999988 65 3589999999998888887666554444
No 84
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=1.8e-14 Score=160.31 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=113.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIY 272 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 272 (449)
-+|-+++.++|.++....+++.+. ++ .+.+++|+||||||||++|+.+|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~---r~----------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL---RR----------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh---cC----------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 357789999999987666665542 11 24689999999999999999999987 35688
Q ss_pred EEecccccC--------hHHHHHHHHcC---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc
Q 013128 273 DLDLSAVQS--------NSELRFLLLTM---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS 341 (449)
Q Consensus 273 ~l~~s~~~~--------~~~l~~~~~~~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 341 (449)
.++++.+.. +..++.++... ..++|||||||+.+.+.++..++. ..-+-|+..+.
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~----------d~~n~Lkp~l~---- 313 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG----------DAANLLKPALA---- 313 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc----------cHHHHhhHHhh----
Confidence 888876542 14566666543 468999999999998643221110 01122444443
Q ss_pred cCCCCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 342 CCGEGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 342 ~~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.+.+.+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 314 --~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 314 --RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred --CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 25678888887643 48999999 995 799999999999999765554
No 85
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.7e-14 Score=151.96 Aligned_cols=157 Identities=20% Similarity=0.330 Sum_probs=115.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
.++|.+|++++|.+.+++.+...+.. . ..+.+||||||||||||++|+++|+.+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~----~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS----N--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 78999999999999988877766642 1 12567999999999999999999998853
Q ss_pred ---------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 270 ---------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 270 ---------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
+++.++...-.....++.+.... ....|++|||+|.+.. ...+.||.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------------~A~NALLK 140 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------------SAFNALLK 140 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------------HHHHHHHH
Confidence 23334332211223344443332 3467999999998742 24677888
Q ss_pred HhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 335 FIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 335 ~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.|+.. +..+++|++|+.++.|.+++++ |+ ..+.|..++.++....+...+..++
T Consensus 141 tLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 141 TLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred HhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcC
Confidence 88863 4567888888999999999998 77 4799999999998888877665443
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.8e-14 Score=148.96 Aligned_cols=162 Identities=19% Similarity=0.303 Sum_probs=119.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+. .. ..+..|||+||+|||||++|+++|+.++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~----~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD----AG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 5789999999999988887766553 11 12456999999999999999999998752
Q ss_pred --------------cEEEEecccccChHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHH
Q 013128 270 --------------DIYDLDLSAVQSNSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTL 329 (449)
Q Consensus 270 --------------~~~~l~~s~~~~~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~l 329 (449)
+++.++.++...-..++.+... ....-|++|||+|.+.. ...
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------------~A~ 135 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------------AGF 135 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------------HHH
Confidence 3555655443333444433222 13456999999998842 256
Q ss_pred HHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH
Q 013128 330 SGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE 400 (449)
Q Consensus 330 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~ 400 (449)
+.||..|+.. +..+++|++|+.+++|.+++++ |. .+++|..++.++....+..++..++..+.+
T Consensus 136 NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~ 199 (584)
T PRK14952 136 NALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDD 199 (584)
T ss_pred HHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 6788888863 4568888888999999999998 75 679999999999888888877766544433
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=4.9e-14 Score=133.56 Aligned_cols=168 Identities=16% Similarity=0.207 Sum_probs=105.8
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
.....+.+||+++.. ..+.+++.+..+... ..+++++|+||||||||++++++++++ +.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 6 VGLPDDPTFDNFYAG--GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCCCchhhcCcCcC--CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 344566789998832 234445555554331 125689999999999999999999987 467888888
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC-C
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN-H 355 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN-~ 355 (449)
+.+.... ...+.......+|+|||+|.+... .. ....|...++..... +. .+|+|++ .
T Consensus 75 ~~~~~~~--~~~~~~~~~~~lLvIDdi~~l~~~-------------~~---~~~~L~~~l~~~~~~--~~-~iIits~~~ 133 (226)
T TIGR03420 75 AELAQAD--PEVLEGLEQADLVCLDDVEAIAGQ-------------PE---WQEALFHLYNRVREA--GG-RLLIAGRAA 133 (226)
T ss_pred HHHHHhH--HHHHhhcccCCEEEEeChhhhcCC-------------hH---HHHHHHHHHHHHHHc--CC-eEEEECCCC
Confidence 8775321 233344455679999999987420 00 112344444432221 22 3444554 4
Q ss_pred CCCCC---ccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH
Q 013128 356 KEKLD---PALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ 401 (449)
Q Consensus 356 ~~~ld---~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~ 401 (449)
+..++ +.|.+ |+ ..++.+|.|+.+++..+++.+....+..+.++
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~ 182 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE 182 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 44432 67776 55 57899999999999999987765444444333
No 88
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.4e-14 Score=149.76 Aligned_cols=159 Identities=19% Similarity=0.308 Sum_probs=117.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+..|||+||||||||++|+++|+.++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~----~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ----Q--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc----C--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 56899999999999998877665542 1 12467999999999999999999999954
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.+.-.....++.++... ....|++|||+|.+.. ...+.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------------~a~na 138 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------------SAFNA 138 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------------HHHHH
Confidence 35555544333334455554432 2356999999998742 24567
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
||..|+.. ++.+++|++|++++.+.+.+++ |+ ..++|..++.++....+...+..++..
T Consensus 139 LLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 139 MLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred HHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 89988863 4567888888888889888887 76 679999999999888888777554433
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.7e-14 Score=146.88 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=115.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+..|||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~----~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET----Q--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 57899999999999998877655531 1 12457999999999999999999998853
Q ss_pred ------------cEEEEecccccChHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++...-.....++.++.. ....-|++|||+|.+.. ...+.
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------------~a~na 138 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------------QSFNA 138 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------------HHHHH
Confidence 5556655332222333333322 13567999999998742 24567
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
||..|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....+...+..++..
T Consensus 139 LLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 139 LLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred HHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 88888863 3556777777788888888888 77 679999999999888888766654433
No 90
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=9.7e-14 Score=152.96 Aligned_cols=158 Identities=22% Similarity=0.182 Sum_probs=117.3
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHH----
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSEL---- 285 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l---- 285 (449)
++.|.+++|+.|++.+....... ...+..++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN-------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc-------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 48999999999998887544321 1224469999999999999999999999999999998877554333
Q ss_pred -----------HHHHHcCC-CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc----c-------c
Q 013128 286 -----------RFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW----S-------C 342 (449)
Q Consensus 286 -----------~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~----~-------~ 342 (449)
...+.... ...||+|||||.+.... + ....+.|+..+|.-. . .
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~--~------------g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDM--R------------GDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccccc--C------------CCHHHHHHHHhccccEEEEecccccccc
Confidence 22233332 45689999999986411 1 113466888887410 0 0
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 343 CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 343 ~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.-+++++|+|+|.. .|+|+|+. ||. .|.++.++.++..+|+++||.
T Consensus 462 dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 462 DLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred cCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 12568999999988 59999999 996 588999999999999999994
No 91
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=8.7e-14 Score=139.72 Aligned_cols=163 Identities=13% Similarity=0.258 Sum_probs=109.8
Q ss_pred cccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-----
Q 013128 194 RWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK----- 268 (449)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----- 268 (449)
.|.. .+.|.+|++++|.+++++.+...+. .+. ..++|||||||||||++|+++|+++.
T Consensus 4 ~w~~----ky~P~~~~~~~g~~~~~~~L~~~~~----~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~ 66 (337)
T PRK12402 4 LWTE----KYRPALLEDILGQDEVVERLSRAVD----SPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWE 66 (337)
T ss_pred chHH----hhCCCcHHHhcCCHHHHHHHHHHHh----CCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccc
Confidence 5754 7899999999999988777765443 211 23699999999999999999999984
Q ss_pred CcEEEEecccccCh--------------------------HHHHHHHH---c----CCCCceEEeeccchhhhcccccch
Q 013128 269 FDIYDLDLSAVQSN--------------------------SELRFLLL---T----MPSRSMLVIEDIDCSVKLQNRESS 315 (449)
Q Consensus 269 ~~~~~l~~s~~~~~--------------------------~~l~~~~~---~----~~~~~Il~iDeiD~l~~~~~~~~~ 315 (449)
.+++.++++++... ..++.+.. . ...+.+|+|||+|.+..
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------- 139 (337)
T PRK12402 67 NNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------- 139 (337)
T ss_pred cceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------
Confidence 34667776553210 11111111 1 13456999999997732
Q ss_pred hhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 316 EVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 316 ~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.....|+..++.. .....+|++++.+..+.++|.+ |+ ..+.++.|+.++...++...+..++
T Consensus 140 -----------~~~~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 140 -----------DAQQALRRIMEQY----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred -----------HHHHHHHHHHHhc----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 1123355555543 1234566677777778888887 65 5689999999999999988776554
Q ss_pred CCC
Q 013128 396 HYL 398 (449)
Q Consensus 396 ~~l 398 (449)
..+
T Consensus 202 ~~~ 204 (337)
T PRK12402 202 VDY 204 (337)
T ss_pred CCC
Confidence 443
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.5e-14 Score=148.86 Aligned_cols=160 Identities=16% Similarity=0.252 Sum_probs=116.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
.++|.+|++|+|.+.+++.|...+.. . .....|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~----~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE----N--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc----C--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 67999999999999887777665531 1 11468999999999999999999999964
Q ss_pred ------------cEEEEecccccChHHHHHH---HHcC---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFL---LLTM---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~---~~~~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++...-.....++.+ +... ....||||||+|.+.. ...+.
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~------------------~a~na 138 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR------------------EAFNA 138 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH------------------HHHHH
Confidence 2556654322222333332 2222 3467999999998842 23567
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..|+.. ...+++|++||.+..+.+.+++ |+ .+++|+.++.++....+...+..++..+
T Consensus 139 LLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~i 198 (624)
T PRK14959 139 LLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDY 198 (624)
T ss_pred HHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 88888753 3457888999999999989888 77 4689999999998888887665544333
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.8e-13 Score=140.14 Aligned_cols=157 Identities=17% Similarity=0.255 Sum_probs=113.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+..+|||||||+|||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~----~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF----N--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 56899999999999888877665531 1 13567999999999999999999998842
Q ss_pred -------------cEEEEecccccChHHHHHH---HHc---CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHH
Q 013128 270 -------------DIYDLDLSAVQSNSELRFL---LLT---MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLS 330 (449)
Q Consensus 270 -------------~~~~l~~s~~~~~~~l~~~---~~~---~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls 330 (449)
+++.++.........++.+ +.. .....|++|||+|.+.. ...+
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------------~~~n 139 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------------EAFN 139 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------------HHHH
Confidence 3455553322222333322 221 24678999999998742 1346
Q ss_pred HHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 331 GLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 331 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.|+..|+.. ++.+++|++||.+..|.+++.+ |+ ..++++.++.++....+...+..++
T Consensus 140 ~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 140 SLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred HHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 688888763 3467788888989999999998 77 4689999999998888877665443
No 94
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=1.4e-13 Score=133.93 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHH-----------
Q 013128 218 KREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELR----------- 286 (449)
Q Consensus 218 k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~----------- 286 (449)
.+.+++.+..++.. .+.+||+||||||||++|+++|+.++.+++.++++.-.....+.
T Consensus 7 ~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 7 VKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred HHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 34455555555442 35799999999999999999999999999999886543222211
Q ss_pred ----------------------HHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-cc-
Q 013128 287 ----------------------FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SC- 342 (449)
Q Consensus 287 ----------------------~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~- 342 (449)
.++....++.+|+||||+.+-+ .+.+.|+..|+.-. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~------------------~~q~~Ll~~Le~~~~~i~ 137 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKP------------------ETNNVLLSVFEEGVLELP 137 (262)
T ss_pred HHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCH------------------HHHHHHHHHhcCCeEEcc
Confidence 0111223568999999998632 24556777775321 00
Q ss_pred ----------CCCCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 343 ----------CGEGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 343 ----------~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
......||+|+|... .++++|++ || ..+.+++|+.++..+|++...+.
T Consensus 138 ~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 138 GKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred CCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 012456899999763 56899999 98 78999999999999999987653
No 95
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=3.7e-14 Score=158.18 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=116.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIY 272 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 272 (449)
-+|-.++.++|.++..+.+++.|..- .+.+++|+||||||||++|+++|..+ +.+++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcC-------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 35678999999998877777665421 24689999999999999999999998 78899
Q ss_pred EEecccccC--------hHHHHHHHHc---CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc
Q 013128 273 DLDLSAVQS--------NSELRFLLLT---MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS 341 (449)
Q Consensus 273 ~l~~s~~~~--------~~~l~~~~~~---~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 341 (449)
.++++.+.. +..++.++.. ...++||||||||.+.+.++..+. . ..-+-|+..+.
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-------~---d~~~~lkp~l~---- 304 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-------M---DAGNMLKPALA---- 304 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc-------h---hHHHHhcchhh----
Confidence 998887642 2345656544 346899999999999764322111 0 01111333332
Q ss_pred cCCCCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 342 CCGEGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 342 ~~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
.+.+.+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..+++.....
T Consensus 305 --~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 305 --RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred --cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 35788899888876 48999999 997 5889999999999999876653
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=8.8e-14 Score=149.08 Aligned_cols=160 Identities=16% Similarity=0.255 Sum_probs=118.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++|+|.+++++.+...+.. . ..+..||||||+|||||++|+++|+.++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT----G--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 57899999999999998888766542 1 12567999999999999999999999853
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++..+......++.+.... ...-|++|||+|.+.. ...+.
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~------------------~a~na 138 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST------------------NAFNA 138 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH------------------HHHHH
Confidence 35556544333334444443332 2356999999998742 24577
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..|+.. .+.+++|++|+.+++|.+.+++ |+ ..++|..++.++....+...+..++..+
T Consensus 139 LLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i 198 (576)
T PRK14965 139 LLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISI 198 (576)
T ss_pred HHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 89988863 4567888899999999999998 76 4689999999888888877776554433
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=4.2e-13 Score=137.18 Aligned_cols=155 Identities=17% Similarity=0.252 Sum_probs=111.4
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc----------------
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD---------------- 270 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---------------- 270 (449)
.|++|+|.+.+++.+...+..... .+...+...+.+|||+||||+|||++|+++|+.+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998887765433 2333445567889999999999999999999987432
Q ss_pred -------EEEEecccc-cChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHh
Q 013128 271 -------IYDLDLSAV-QSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFI 336 (449)
Q Consensus 271 -------~~~l~~s~~-~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 336 (449)
++.+..... ....+++.++... ....|++|||+|.+.. ...+.||..|
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------------~aanaLLk~L 141 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------------RAANALLKAV 141 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------------HHHHHHHHHh
Confidence 333433221 1234455544432 2356999999999843 1346688888
Q ss_pred cCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 013128 337 DGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 337 dg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~ 389 (449)
+.. +.+.++|++|++++.|.|++++ |+ ..++|+.|+.++..+.+..
T Consensus 142 Eep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 142 EEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred hcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 763 3456677777779999999998 77 6899999999998877764
No 98
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-13 Score=143.86 Aligned_cols=170 Identities=16% Similarity=0.226 Sum_probs=124.3
Q ss_pred CCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC------hHHHHHHHHcC--CCCceEEeeccchhhhccc
Q 013128 240 RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQN 311 (449)
Q Consensus 240 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~ 311 (449)
+.....+||+|+||||||+++++.|.++|.+++.++|.++.. +..+...+.++ .+|+||||-++|.+.- +
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d 505 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--D 505 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--c
Confidence 334456999999999999999999999999999999988853 35566666665 4899999999999863 2
Q ss_pred ccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 312 RESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
+.+. ..-.....+..++. +|-... ....+|+|+||+..+.+++.+.+ .|-..|.+|.|+.++|.++++.|+
T Consensus 506 ~dgg-----ed~rl~~~i~~~ls-~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 506 QDGG-----EDARLLKVIRHLLS-NEDFKF-SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYL 576 (953)
T ss_pred CCCc-----hhHHHHHHHHHHHh-cccccC-CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHH
Confidence 2211 11223334444444 332222 24678999999999999999998 888999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHcc-CCCHHHHHHHH
Q 013128 392 GISHHYLFEQIEELIKEV-NVTPAEVAGEL 420 (449)
Q Consensus 392 ~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 420 (449)
......-......++.+. +|+.+++..+.
T Consensus 577 ~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 577 NHLPLNQDVNLKQLARKTSGFSFGDLEALV 606 (953)
T ss_pred hccccchHHHHHHHHHhcCCCCHHHHHHHh
Confidence 854322223344555543 58888885443
No 99
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.5e-13 Score=142.46 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=114.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+.+.+...+.. . ..+..||||||||+|||++|+.+|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~----~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL----Q--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 67899999999999988877665532 1 12467999999999999999999999852
Q ss_pred ------------cEEEEecccccChHHHHHHH---HcC---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLL---LTM---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~---~~~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.+.-.....++.+. ... ....|++|||+|.+.. ...+.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------------~a~na 138 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------------EAFNA 138 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------------HHHHH
Confidence 34455543322223333332 222 3567999999998742 23466
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..++.. +...++|++|+.++.+.+++.+ |+ ..+.++.++.++....+...+...+...
T Consensus 139 LLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 139 LLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred HHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 88888753 3456777777888889999988 76 4699999999999988888776554443
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.7e-13 Score=141.03 Aligned_cols=157 Identities=16% Similarity=0.283 Sum_probs=111.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+.+||||||||||||++|+++|+.+..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~----~--------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRM----G--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHh----C--------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 57899999999999998877665531 1 12467999999999999999999999954
Q ss_pred --------------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccch
Q 013128 270 --------------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQE 323 (449)
Q Consensus 270 --------------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~ 323 (449)
+++.++.........++.+.... ....|++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 23334332222234444443333 2457999999998742
Q ss_pred hhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 324 ENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 324 ~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
...+.|+..++.. ....++|++|+.+..+-+++.+ |.. .++++.++.++....+...+..++
T Consensus 142 ---~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 142 ---AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred ---HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcC
Confidence 2345678887643 3456777777778888888887 664 689999999888888887765443
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.7e-13 Score=145.12 Aligned_cols=161 Identities=16% Similarity=0.296 Sum_probs=118.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc-----------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD----------- 270 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 270 (449)
.++|.+|++|+|.+.+++.+...+.. | ..+.++||+||+|+|||++|+++|+.+++.
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 67999999999999988887765531 1 125689999999999999999999998642
Q ss_pred ------------------EEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhH
Q 013128 271 ------------------IYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENK 326 (449)
Q Consensus 271 ------------------~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~ 326 (449)
++.++..+...-..++.++... ....|+||||+|.+..
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------------ 146 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------------ 146 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------------
Confidence 3333333322334455443332 2467999999998742
Q ss_pred HHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 327 VTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 327 ~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
...+.||..|+.. ...+++|++|+.++++.+.+++ |+ ..++|..++.++....+...+..++..+.
T Consensus 147 ~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~ 212 (598)
T PRK09111 147 AAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVE 212 (598)
T ss_pred HHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2467788888763 4567888888888889889888 76 56999999999998888888766554443
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=6.8e-14 Score=156.53 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=113.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEE
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIY 272 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 272 (449)
-+|-.++.++|.++..+.+++.+.. ..+++++|+||||||||++++++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 3667899999999877766665532 125689999999999999999999986 67888
Q ss_pred EEecccccC--------hHHHHHHHHcC---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc
Q 013128 273 DLDLSAVQS--------NSELRFLLLTM---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS 341 (449)
Q Consensus 273 ~l~~s~~~~--------~~~l~~~~~~~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 341 (449)
.++++.+.. +..+..++... ..++||||||||.+.+.+...+. ....+-|...+.
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~----------~d~~~~Lk~~l~---- 299 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA----------MDAGNMLKPALA---- 299 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch----------hHHHHHhchhhh----
Confidence 888776532 12455555543 46899999999999753221110 011122333331
Q ss_pred cCCCCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 342 CCGEGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 342 ~~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
.+.+.+|++|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+...
T Consensus 300 --~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 300 --RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred --cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence 34678888887763 47999999 996 4899999999999999876543
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.8e-13 Score=140.70 Aligned_cols=160 Identities=18% Similarity=0.267 Sum_probs=118.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK------------- 268 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------------- 268 (449)
..+|.+|++++|.+.+++.+...+. .. ..+..||||||||+|||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~----~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD----NN--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 6789999999999999887776653 11 1356799999999999999999999973
Q ss_pred -----------CcEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 269 -----------FDIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 269 -----------~~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
.+++.++.++-..-..++.+.... ...-|++|||+|.+.. ...+.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~------------------~A~NA 136 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK------------------EAFNA 136 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------------HHHHH
Confidence 245666544322345566555432 2346999999998742 34567
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
||..|+.. +..+.+|++|+.+..|.++++. |. .+++|..++.++....+...+..++...
T Consensus 137 LLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i 196 (535)
T PRK08451 137 LLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSY 196 (535)
T ss_pred HHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 88888764 3456777788888999999998 75 5799999999998888887776654443
No 104
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.8e-13 Score=144.00 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=116.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+++++.+...+.. . ....+||||||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~----~--------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS----N--------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc----C--------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 67899999999999988887766542 1 11357999999999999999999999864
Q ss_pred --------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHH
Q 013128 270 --------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTL 329 (449)
Q Consensus 270 --------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~l 329 (449)
+++.++.........++.++... ...-|+||||+|.+.. ...
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------------~a~ 138 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------------AAF 138 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH------------------HHH
Confidence 34455543323334555554433 2356999999998732 345
Q ss_pred HHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 330 SGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 330 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
+.||..|+.. ...+++|++|++++.+-+++++ |+ ..++|+.++.++....+......++..
T Consensus 139 naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 139 NALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred HHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 7789999853 3567888888889999999988 76 568899998888777776665544333
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.8e-13 Score=143.25 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=116.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+.. . ..+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~----~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES----N--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 56899999999999998887766642 1 12567999999999999999999999853
Q ss_pred ------------cEEEEecccccChHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++...-..-..++.+... ....-|++|||+|.+.. ..++.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------------~a~na 138 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------------SAFNA 138 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------------HHHHH
Confidence 3444543322222344444321 23567999999998742 24677
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY 397 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~ 397 (449)
||..++.. +..+++|++|+.+..|.+++.+ |+. .+++..++.++....++..+..++..
T Consensus 139 LLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 139 LLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred HHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 88888753 4567888888889999999998 774 58999999999888888777544433
No 106
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.51 E-value=2.4e-13 Score=139.66 Aligned_cols=177 Identities=19% Similarity=0.213 Sum_probs=112.9
Q ss_pred cc-cccCCHHHHHHHHHHHHHHHcChhHHhh--hcC-CCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--
Q 013128 208 FK-TLALDSELKREITEDLENFMNGKEYYTR--IGR-AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-- 281 (449)
Q Consensus 208 f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~--~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (449)
++ .++|.++.|+.+...+....++-..... -+. ....++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 44 4799999999887666544332211000 011 13567999999999999999999999999999999887642
Q ss_pred ------hHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc-------
Q 013128 282 ------NSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC------- 342 (449)
Q Consensus 282 ------~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------- 342 (449)
...+..++.. ...++||||||||.+.......+ .. .+-....+.+.||..|||....
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~--~~--~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS--IT--RDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC--cC--CCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 1222333222 23689999999999975311110 00 0111234678899999875311
Q ss_pred --CCCCeEEEEEcCCCC----------------------------------------------------CCCccccCCCc
Q 013128 343 --CGEGRIIVFTTNHKE----------------------------------------------------KLDPALLRPGR 368 (449)
Q Consensus 343 --~~~~~iiI~tTN~~~----------------------------------------------------~ld~aLlrpgR 368 (449)
.....++|.|+|-.. .+.|+|+ ||
T Consensus 225 ~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gR 302 (412)
T PRK05342 225 KHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GR 302 (412)
T ss_pred CcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CC
Confidence 112346667766510 0234444 49
Q ss_pred cceEEEeCCCCHHHHHHHHHHH
Q 013128 369 MDMHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 369 ~d~~i~l~~p~~~~r~~l~~~~ 390 (449)
++..+.|..++.++...|+...
T Consensus 303 ld~iv~f~~L~~~~L~~Il~~~ 324 (412)
T PRK05342 303 LPVVATLEELDEEALVRILTEP 324 (412)
T ss_pred CCeeeecCCCCHHHHHHHHHHH
Confidence 9999999999999988888743
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=7e-13 Score=132.07 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=113.1
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC----
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---- 268 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---- 268 (449)
..|.. .++|.+|++++|.+++++.+...+. ... ..++|||||||||||++++++++++.
T Consensus 5 ~~w~~----kyrP~~~~~~~g~~~~~~~l~~~i~----~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~ 67 (319)
T PRK00440 5 EIWVE----KYRPRTLDEIVGQEEIVERLKSYVK----EKN---------MPHLLFAGPPGTGKTTAALALARELYGEDW 67 (319)
T ss_pred Cccch----hhCCCcHHHhcCcHHHHHHHHHHHh----CCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 35865 8899999999999988887776553 111 23589999999999999999999973
Q ss_pred -CcEEEEecccccChHHHH----HHHHcC----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc
Q 013128 269 -FDIYDLDLSAVQSNSELR----FLLLTM----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 269 -~~~~~l~~s~~~~~~~l~----~~~~~~----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 339 (449)
..++.++.+.......+. ...... ..+.+|+|||+|.+.. .....|+..++..
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------------~~~~~L~~~le~~ 129 (319)
T PRK00440 68 RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------------DAQQALRRTMEMY 129 (319)
T ss_pred ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------------HHHHHHHHHHhcC
Confidence 345555544433222221 111111 2356999999998742 1123466666543
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
. ....+|+++|.+..+.+++.+ |+. .++++.++.++...+++.++...+..+
T Consensus 130 ~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 130 S----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred C----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2 335677788888888888887 765 589999999999999998887655444
No 108
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=2.3e-13 Score=140.48 Aligned_cols=190 Identities=16% Similarity=0.213 Sum_probs=119.1
Q ss_pred cCCCCCcccc-cCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 013128 202 LKHPMTFKTL-ALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLD 275 (449)
Q Consensus 202 ~~~p~~f~~l-~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 275 (449)
+.+..+||+. +|.... .....+..+...+ +. ..++++||||||||||+|++++|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNR--LAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcHH--HHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4455689995 454332 2333444443332 11 13569999999999999999999998 56788888
Q ss_pred cccccCh-------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeE
Q 013128 276 LSAVQSN-------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRI 348 (449)
Q Consensus 276 ~s~~~~~-------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 348 (449)
+.++... .....+........+|+|||||.+.+.. .+...|+..++.+... +..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~----------------~~~~~l~~~~n~~~~~--~~~i 235 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE----------------RTQEEFFHTFNALHEN--GKQI 235 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCH----------------HHHHHHHHHHHHHHHC--CCCE
Confidence 7654321 0111222223456799999999875310 1122345555444332 2345
Q ss_pred EEEEcCCCC---CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHH-HHHHHccCCCHHHHHHHH
Q 013128 349 IVFTTNHKE---KLDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQI-EELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 349 iI~tTN~~~---~ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i-~~l~~~~~~tpa~i~~~l 420 (449)
||.++..|. .+++.+.+ ||. ..++++.|+.++|..+++..+...+..+.+++ +.+++...-+..++...|
T Consensus 236 iits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 236 VLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred EEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 554444554 36788888 775 58999999999999999999987766665554 444555555666655544
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.50 E-value=5.6e-13 Score=127.56 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=98.5
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~ 276 (449)
+......+||+.+-..+ +.....+..+...+. .+.++||||||||||+|++++|+++. ..+..+++
T Consensus 13 ~~~~~~~~fd~f~~~~n--~~a~~~l~~~~~~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 13 LYLPDDETFASFYPGDN--DSLLAALQNALRQEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCCCcCCccccccCcc--HHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 33556678999873321 224455554433221 35799999999999999999999874 44566665
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
...... ....+....+-.+|+||||+.+.+. ......+-.+++.+ ... +...+|+.+++.|
T Consensus 82 ~~~~~~--~~~~~~~~~~~dlliiDdi~~~~~~-------------~~~~~~lf~l~n~~---~e~-g~~~li~ts~~~p 142 (235)
T PRK08084 82 DKRAWF--VPEVLEGMEQLSLVCIDNIECIAGD-------------ELWEMAIFDLYNRI---LES-GRTRLLITGDRPP 142 (235)
T ss_pred HHHhhh--hHHHHHHhhhCCEEEEeChhhhcCC-------------HHHHHHHHHHHHHH---HHc-CCCeEEEeCCCCh
Confidence 543221 1122223333468999999987431 11122232333332 221 2224555555566
Q ss_pred CC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhC
Q 013128 357 EK---LDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 357 ~~---ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.. +.|.|.+ |+. ..+.+..|+.+++.++++....
T Consensus 143 ~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 143 RQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 55 5799998 775 7899999999999999886443
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=1.6e-13 Score=149.61 Aligned_cols=153 Identities=22% Similarity=0.293 Sum_probs=106.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+|.+|++++|.+..... ...+...+.... ..++|||||||||||++|+++|+.++.+++.+++....
T Consensus 21 k~RP~tldd~vGQe~ii~~-~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~- 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGE-GRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG- 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhh-hHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-
Confidence 5679999999999887643 112222232211 34799999999999999999999999998888865322
Q ss_pred hHHHHHH-------HHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc-
Q 013128 282 NSELRFL-------LLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT- 353 (449)
Q Consensus 282 ~~~l~~~-------~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT- 353 (449)
...++.. +.......||||||||.+.. .....|+..++. ..+++|++|
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------------~qQdaLL~~lE~------g~IiLI~aTT 145 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------------AQQDALLPWVEN------GTITLIGATT 145 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------------HHHHHHHHHhcC------ceEEEEEecC
Confidence 1122221 22234578999999998742 122346666653 335666644
Q ss_pred -CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 354 -NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 354 -N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
|....+++++++ |+ ..+.++.++.++...++++++.
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 333578999998 64 4589999999999999999886
No 111
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.1e-13 Score=142.12 Aligned_cols=158 Identities=15% Similarity=0.249 Sum_probs=113.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.+.+++.+...+. .. ..+.+|||+||||||||++|+++|+.+..
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~----~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR----MD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 5689999999999988887665442 11 22567999999999999999999999965
Q ss_pred --------------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccch
Q 013128 270 --------------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQE 323 (449)
Q Consensus 270 --------------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~ 323 (449)
+++.++.........++.+.... ...-|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 23333332222234455444333 3467999999998742
Q ss_pred hhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCC
Q 013128 324 ENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHH 396 (449)
Q Consensus 324 ~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~ 396 (449)
...+.||..|+.. +...++|++|+.+..|-+++.+ |. ..++|..++.++....+...+..++.
T Consensus 142 ---~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 142 ---AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred ---HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 2356788888763 3456777777888899999988 66 56999999999888777776654443
No 112
>PRK08727 hypothetical protein; Validated
Probab=99.49 E-value=7.9e-13 Score=126.37 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=103.1
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+......+||+.++.+.- ....+..... | .+...++|+||+|||||+|++|+|+++ +..+..+++
T Consensus 10 ~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 445566789998766543 1222222211 1 123569999999999999999998886 566677776
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC-C
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN-H 355 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN-~ 355 (449)
.... ..+...+....+..+|+|||++.+... ......+-.++|.+ .. .+.-+|+|+| .
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~-------------~~~~~~lf~l~n~~---~~---~~~~vI~ts~~~ 136 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAGQ-------------REDEVALFDFHNRA---RA---AGITLLYTARQM 136 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccCC-------------hHHHHHHHHHHHHH---HH---cCCeEEEECCCC
Confidence 5543 234455666677789999999987531 11122233344443 22 1233555554 5
Q ss_pred CCCC---CccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcC
Q 013128 356 KEKL---DPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGIS 394 (449)
Q Consensus 356 ~~~l---d~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~ 394 (449)
|..+ +|+|.+ || ...+.++.|+.+++.++++......
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 6554 799998 86 5789999999999999999765433
No 113
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.49 E-value=7.9e-13 Score=125.72 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=102.2
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
.....|.+||++++..+ +.+...+..+.. +....++++|+||||||||+|++++++++ +..++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 44567788999873322 123333443332 12235689999999999999999999986 667888887
Q ss_pred ccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 277 SAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 277 s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
...... +.......+|+|||+|.+.. ... ..|+..++.... ....++|+|++.+
T Consensus 79 ~~~~~~------~~~~~~~~~liiDdi~~l~~---------------~~~---~~L~~~~~~~~~--~~~~~vl~~~~~~ 132 (227)
T PRK08903 79 ASPLLA------FDFDPEAELYAVDDVERLDD---------------AQQ---IALFNLFNRVRA--HGQGALLVAGPAA 132 (227)
T ss_pred HHhHHH------HhhcccCCEEEEeChhhcCc---------------hHH---HHHHHHHHHHHH--cCCcEEEEeCCCC
Confidence 665321 23344578999999998632 111 224444443322 1233455555543
Q ss_pred C---CCCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH
Q 013128 357 E---KLDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHHYLFE 400 (449)
Q Consensus 357 ~---~ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~ 400 (449)
. .+.+.|.+ |+ ...+++|.|+.++...++..+....+..+.+
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~ 179 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLAD 179 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 2 35567776 66 5799999999988888887665444444433
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=1.5e-13 Score=150.44 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=107.8
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEec
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLDL 276 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~ 276 (449)
.++.++|.++..+.+++.+... .+.++||+||||||||++|+++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3667888888878777765431 14688999999999999999999875 556777766
Q ss_pred ccccC--------hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCC
Q 013128 277 SAVQS--------NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEG 346 (449)
Q Consensus 277 s~~~~--------~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~ 346 (449)
+.+.. +..+..++.. ...++||||||||.+++.+...+. .....+-|...+. .++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---------~~d~~nlLkp~L~------~g~ 315 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---------QVDAANLIKPLLS------SGK 315 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---------HHHHHHHHHHHHh------CCC
Confidence 55432 2234444432 346889999999999864321111 0011122222332 356
Q ss_pred eEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 347 RIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 347 ~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
+.+|++||.++ ..|+||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 88899988765 57999999 996 799999999999999997654
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.1e-13 Score=143.16 Aligned_cols=160 Identities=16% Similarity=0.259 Sum_probs=114.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++|+|.+.+++.+...+.. . ..+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~----~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE----G--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh----C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 57899999999999998887665542 1 12456999999999999999999998842
Q ss_pred -------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHH
Q 013128 270 -------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLS 330 (449)
Q Consensus 270 -------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls 330 (449)
+++.++.+.......++.+.... ....|+||||+|.+.. ..++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------------~a~n 138 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------------AAFN 138 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------------HHHH
Confidence 34455543333334444433221 3467999999998742 2456
Q ss_pred HHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 331 GLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 331 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
.||..++.. ....++|++++..+.+.+.+.+ |+ ..++|..++..+....+...+..++..+
T Consensus 139 aLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i 199 (585)
T PRK14950 139 ALLKTLEEP----PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINL 199 (585)
T ss_pred HHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 788888763 3456778888888888888887 66 4588999999988888887766554433
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=7.9e-13 Score=144.86 Aligned_cols=159 Identities=18% Similarity=0.276 Sum_probs=113.8
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHH
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLL 289 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~ 289 (449)
.++|.++.++.|.+.+.....+-. ..+ .+...+||+||||||||.+|+++|..++.+++.++++..........++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~-kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCC-CCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 478999998888888765432110 001 1223599999999999999999999999999999998875432222221
Q ss_pred ------------------HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-cccc-C-----C
Q 013128 290 ------------------LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-LWSC-C-----G 344 (449)
Q Consensus 290 ------------------~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~-~-----~ 344 (449)
......+||+|||||.+.+ .+.+.||+.||. .... . -
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~------------------~v~~~LLq~ld~G~ltd~~g~~vd~ 596 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP------------------DVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH------------------HHHHHHHHHHhcCeeecCCCceecC
Confidence 1123468999999998743 356778888873 2111 1 1
Q ss_pred CCeEEEEEcCCC-------------------------CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 345 EGRIIVFTTNHK-------------------------EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 345 ~~~iiI~tTN~~-------------------------~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.+.++|+|||.- ..+.|.|+. |+|..|.|++++.++..+|+..++.
T Consensus 597 rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999932 125577777 9999999999999999999988775
No 117
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.48 E-value=3.7e-12 Score=129.51 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=109.7
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---------CcEEEEeccc
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---------FDIYDLDLSA 278 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---------~~~~~l~~s~ 278 (449)
.+.++|.++..+.|...+...+.+.. +.+++|+||||||||++++++++++. ..++.++|..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~---------~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSR---------PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCC---------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 46789999999999988877665321 46799999999999999999998763 5677888765
Q ss_pred ccChHH--------------------------HH---HHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHH
Q 013128 279 VQSNSE--------------------------LR---FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTL 329 (449)
Q Consensus 279 ~~~~~~--------------------------l~---~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~l 329 (449)
..+... +. ..+....++.||+|||+|.+... ....+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------------~~~~L 149 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------------DDDLL 149 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------------CcHHH
Confidence 433211 01 11222345789999999998620 01133
Q ss_pred HHHHHHhcCccccCCCCeEEEEEcCCCC---CCCccccCCCccc-eEEEeCCCCHHHHHHHHHHHhC
Q 013128 330 SGLLNFIDGLWSCCGEGRIIVFTTNHKE---KLDPALLRPGRMD-MHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 330 s~LL~~ldg~~~~~~~~~iiI~tTN~~~---~ld~aLlrpgR~d-~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
..|+...+- ....+..+.+|+++|.++ .+++.+.+ ||. ..++|++++.++..++++..+.
T Consensus 150 ~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 150 YQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 344433111 111235678888998875 57888877 664 6799999999999999998875
No 118
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=3.4e-13 Score=141.13 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=119.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEec
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDL 276 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 276 (449)
+.+..+||+.+..+.-+ .....+..+...+ |.. .++++||||||||||+|++++|+++ +..++.+++
T Consensus 115 l~~~~tfd~fv~g~~n~-~a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNR-LAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcH-HHHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 55667899965333222 1333344443322 111 2569999999999999999999998 566888887
Q ss_pred ccccCh-------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEE
Q 013128 277 SAVQSN-------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRII 349 (449)
Q Consensus 277 s~~~~~-------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 349 (449)
.++... .....+.....+..+|+|||||.+.+.. .+...|+..++.+... +..+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~----------------~~~~~l~~~~n~l~~~--~~~ii 248 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE----------------RTQEEFFHTFNALHEA--GKQIV 248 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH----------------HHHHHHHHHHHHHHHC--CCcEE
Confidence 665321 1112233344467899999999875311 1223345555444332 22355
Q ss_pred EEEcCCCCC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHH-HHHccCCCHHHHHHHH
Q 013128 350 VFTTNHKEK---LDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEE-LIKEVNVTPAEVAGEL 420 (449)
Q Consensus 350 I~tTN~~~~---ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~-l~~~~~~tpa~i~~~l 420 (449)
|.++..|.. ++++|.+ ||. ..+++..|+.+++..+++..+...+..+.+++.. +++...-+..++...|
T Consensus 249 its~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 249 LTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred EECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHH
Confidence 544455544 6789988 885 6899999999999999999887666666555433 4444445555554444
No 119
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.4e-13 Score=142.11 Aligned_cols=161 Identities=17% Similarity=0.293 Sum_probs=121.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK------------- 268 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------------- 268 (449)
.++|.+|++++|.+.+++.+...+.. . ..+..||||||+|+|||++|+++|+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~----~--------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT----N--------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 67899999999999998887766541 1 1256799999999999999999999874
Q ss_pred ------------CcEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHH
Q 013128 269 ------------FDIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLS 330 (449)
Q Consensus 269 ------------~~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls 330 (449)
.+++.++..+......++.+.... ...-|++|||+|.+.. ...+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------------~a~n 139 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------------AAFN 139 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------------HHHH
Confidence 456666665444445566555333 2456999999998742 2456
Q ss_pred HHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 331 GLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 331 ~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
.||..|+.. +...++|++|+.+..|-++|++ |+ ..++|..++.++....+...+..++....
T Consensus 140 aLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~ 201 (614)
T PRK14971 140 AFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAE 201 (614)
T ss_pred HHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 788888864 3456788888888899999998 76 45999999999988888877766554443
No 120
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=1.4e-12 Score=133.35 Aligned_cols=175 Identities=19% Similarity=0.225 Sum_probs=111.5
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhh----hcCC-CCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC---
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTR----IGRA-WKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS--- 281 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~----~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--- 281 (449)
-++|.++.++.+...+....++-..... -++. .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3589999999887766443332110000 0111 1357999999999999999999999999999888776532
Q ss_pred -----hHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc--------
Q 013128 282 -----NSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC-------- 342 (449)
Q Consensus 282 -----~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-------- 342 (449)
...+..++.. ...++||+|||||.+....+... .. ..-....+.+.||..|||....
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s--~~--~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS--IT--RDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc--cc--ccccchhHHHHHHHHhhccceecccCCCcc
Confidence 1223333322 23678999999999875322111 00 0111124667788988876421
Q ss_pred -CCCCeEEEEEcCCC---------------------------C-----------------------CCCccccCCCccce
Q 013128 343 -CGEGRIIVFTTNHK---------------------------E-----------------------KLDPALLRPGRMDM 371 (449)
Q Consensus 343 -~~~~~iiI~tTN~~---------------------------~-----------------------~ld~aLlrpgR~d~ 371 (449)
...+.++|+|+|-. + .+.|+|+. |++.
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~ 311 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPV 311 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCe
Confidence 11345788888861 0 02244544 9999
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 013128 372 HLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 372 ~i~l~~p~~~~r~~l~~~~ 390 (449)
.+.|.+++.++..+|+..-
T Consensus 312 Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 312 IATLEKLDEEALIAILTKP 330 (413)
T ss_pred EeecCCCCHHHHHHHHHHH
Confidence 9999999999988888753
No 121
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.3e-12 Score=136.01 Aligned_cols=162 Identities=17% Similarity=0.295 Sum_probs=124.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc-----------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD----------- 270 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 270 (449)
.++|.+|++++|.+.+.+.+...+..= ....+|||.||.||||||+|+.+|..+++.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 568999999999999888887765421 114689999999999999999999999643
Q ss_pred -------------EEEEecccccChHHHHHHHHcCC------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 271 -------------IYDLDLSAVQSNSELRFLLLTMP------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 271 -------------~~~l~~s~~~~~~~l~~~~~~~~------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
++.+|..+-..-.+++.+..+.. +.-|.+|||++.+. ...++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------------~~afNA 138 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------------KQAFNA 138 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------------HHHHHH
Confidence 23333333233455666665543 35699999999874 356788
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE 400 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~ 400 (449)
||..++.- +..+++|++|..+.++++.+++ |+ .++.|...+.++....+..++..++....+
T Consensus 139 LLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~ 200 (515)
T COG2812 139 LLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEE 200 (515)
T ss_pred HhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCH
Confidence 99888763 6789999999999999999999 87 568899999999999999999877554443
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.45 E-value=6.5e-13 Score=148.26 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=109.9
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEec
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLDL 276 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~ 276 (449)
.++.++|.++..+.+++.|... .+++++|+||||||||++|+++|..+ +..++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 5778899998888888766421 25789999999999999999999987 478999998
Q ss_pred ccccC--------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCC
Q 013128 277 SAVQS--------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEG 346 (449)
Q Consensus 277 s~~~~--------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~ 346 (449)
+.+.. +..+..++... ..++||||||||.+.+.+...+. ....+-|...+. .++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~----------~~~a~lLkp~l~------rg~ 307 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA----------IDAANILKPALA------RGE 307 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc----------ccHHHHhHHHHh------CCC
Confidence 76532 23566666543 45899999999999864322111 011122334442 246
Q ss_pred eEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 347 RIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 347 ~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
+.+|++|+..+ ..||+|.+ ||.. |.++.|+.++...|++...
T Consensus 308 l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 308 LQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHH
Confidence 77888887653 47999999 9964 8999999999888887543
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=99.43 E-value=2.8e-12 Score=122.63 Aligned_cols=161 Identities=16% Similarity=0.208 Sum_probs=102.4
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCC-CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAW-KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+...+..+||+.+... .....+.+..+..... .| .+.++||||+|||||+|++|+|+++ +..+++++
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEADA-------GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhccc-------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 4556667999987332 2345555554433211 12 3678999999999999999999875 56788888
Q ss_pred cccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 276 LSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 276 ~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
..++... ...++....+.-+|+|||++.+.+. .. +...|+..++.... .+..+|+.++..
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~~-------------~~---~~~~Lf~l~n~~~~--~g~~ilits~~~ 140 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIAGK-------------AD---WEEALFHLFNRLRD--SGRRLLLAASKS 140 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhcCC-------------hH---HHHHHHHHHHHHHh--cCCEEEEeCCCC
Confidence 7766432 1223333444568999999977431 11 11234444444332 234455555555
Q ss_pred CCC---CCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHh
Q 013128 356 KEK---LDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 356 ~~~---ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l 391 (449)
|.. ..|+|.+ |+ ...+.+..|+.+++..+++...
T Consensus 141 p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 141 PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 533 3688988 77 5778899999999999998544
No 124
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=1.1e-12 Score=129.52 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=92.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHH-------------------HHHcCCCCceEEeecc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRF-------------------LLLTMPSRSMLVIEDI 303 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~-------------------~~~~~~~~~Il~iDei 303 (449)
.+.+||.||||||||++++++|..++.+++.++++......++.. +......+++|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 468999999999999999999999999999998776543221110 0011135788999999
Q ss_pred chhhhcccccchhhhhccchhhHHHHHHHHHHhcC--ccc--------cCCCCeEEEEEcCCCC------------CCCc
Q 013128 304 DCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG--LWS--------CCGEGRIIVFTTNHKE------------KLDP 361 (449)
Q Consensus 304 D~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg--~~~--------~~~~~~iiI~tTN~~~------------~ld~ 361 (449)
|..-+ .+++.|...+|. ... .......+|+|+|..+ .+++
T Consensus 144 n~a~p------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 144 DAGRP------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred hccCH------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 97632 233444444431 110 0123467899999865 3689
Q ss_pred cccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 362 ALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 362 aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
|++. ||-+.+.++||+.+...+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 9999 998889999999999999988764
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=5.1e-12 Score=139.50 Aligned_cols=155 Identities=17% Similarity=0.269 Sum_probs=110.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCC---CCc-ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRA---WKR-GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSE 284 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~ 284 (449)
+.++|.++.++.|.+.+.... .|.. .|. .+||+||||||||++|+++|..++.+++.++++.+.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~--------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR--------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh--------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 346777777777776654321 2221 133 4899999999999999999999999999999887643211
Q ss_pred -------------------HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccC--
Q 013128 285 -------------------LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC-- 343 (449)
Q Consensus 285 -------------------l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~-- 343 (449)
+...+. ....+||+|||||.+.+ ...+.||+.+|.-.-..
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~------------------~~~~~Ll~~ld~g~~~d~~ 586 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP------------------DIYNILLQVMDYATLTDNN 586 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH------------------HHHHHHHHhhccCeeecCC
Confidence 222222 34568999999998743 35567888887432110
Q ss_pred -----CCCeEEEEEcCCCC-------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 344 -----GEGRIIVFTTNHKE-------------------------KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 344 -----~~~~iiI~tTN~~~-------------------------~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
-.+.+||+|||... .+.|.|+. |||..|.|.+.+.++..+|++..+.
T Consensus 587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 13468999998631 24567766 9999999999999999999998875
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=1.6e-11 Score=126.15 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=109.3
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEecccccC
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSAVQS 281 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~~ 281 (449)
..+.+++.++..+++...+...+.+.. +.+++||||||||||++++.+++++ +..++.++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~---------~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSR---------PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 346788888888888888776654321 4579999999999999999999988 57788888764422
Q ss_pred h-----------------------HHH----HHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 282 N-----------------------SEL----RFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 282 ~-----------------------~~l----~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
. .++ ...+.....+.||+|||+|.+.. .. ....+..|+.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~--~~------------~~~~l~~l~~ 164 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE--KE------------GNDVLYSLLR 164 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc--cC------------CchHHHHHHH
Confidence 1 111 11122234568999999999862 00 1124555666
Q ss_pred HhcCccccCCCCeEEEEEcCCC---CCCCccccCCCcc-ceEEEeCCCCHHHHHHHHHHHhC
Q 013128 335 FIDGLWSCCGEGRIIVFTTNHK---EKLDPALLRPGRM-DMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 335 ~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~-d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.++... +..+.+|+++|.. +.+++.+.+ |+ ...|+|++++.++..++++..+.
T Consensus 165 ~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 165 AHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred hhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 555432 2357788888876 357777766 55 35789999999999999988774
No 127
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=2.6e-12 Score=136.22 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=121.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEec
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDL 276 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 276 (449)
+....+||+++..+.-. .....+......+ +. +.+.++|||++|||||+|++|||+++ ++.++++++
T Consensus 281 L~~~~TFDnFvvG~sN~-~A~aaa~avae~~------~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 281 LNPKYTFDTFVIGASNR-FAHAAAVAVAEAP------AK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCCCHhhhcCCCccH-HHHHHHHHHHhCc------cc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 44556899987443322 1222222222221 11 23469999999999999999999987 567888887
Q ss_pred ccccCh-------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEE
Q 013128 277 SAVQSN-------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRII 349 (449)
Q Consensus 277 s~~~~~-------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 349 (449)
.++... ..+..+.....+..+|+||||+.+.+.. .+...|++.++.+... +. -|
T Consensus 353 eef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke----------------~tqeeLF~l~N~l~e~--gk-~I 413 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE----------------STQEEFFHTFNTLHNA--NK-QI 413 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH----------------HHHHHHHHHHHHHHhc--CC-CE
Confidence 665321 1112223334567899999999875311 1122344444444332 22 34
Q ss_pred EEEcCCC----CCCCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHH-HHccCCCHHHHHHHHh
Q 013128 350 VFTTNHK----EKLDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEEL-IKEVNVTPAEVAGELM 421 (449)
Q Consensus 350 I~tTN~~----~~ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l-~~~~~~tpa~i~~~l~ 421 (449)
|+|+|.+ ..+++.|.+ || ...+++..|+.+.|..|++......+..+.+++.+. +.+..-+..++...|.
T Consensus 414 IITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 414 VLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred EEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 4566654 357889998 66 778899999999999999999888777776665554 4555556666666554
No 128
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.41 E-value=3.4e-12 Score=120.86 Aligned_cols=185 Identities=17% Similarity=0.227 Sum_probs=107.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEeccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSA 278 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~ 278 (449)
+..|||+.+-.+.-+ .....+......+. . ....++||||+|+|||+|++|+|+++ +..+++++...
T Consensus 3 ~~~tFdnfv~g~~N~-~a~~~~~~ia~~~~------~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 3 PKYTFDNFVVGESNE-LAYAAAKAIAENPG------E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp TT-SCCCS--TTTTH-HHHHHHHHHHHSTT------T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCccccCCcCCcHH-HHHHHHHHHHhcCC------C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 446899986332221 23333334444332 1 12458999999999999999999986 56788887766
Q ss_pred ccCh-------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 279 VQSN-------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 279 ~~~~-------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
+... ..+..+......--+|+|||++.+.+. ..+...|...++.+... +..+|+.
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~----------------~~~q~~lf~l~n~~~~~--~k~li~t 136 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK----------------QRTQEELFHLFNRLIES--GKQLILT 136 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH----------------HHHHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc----------------hHHHHHHHHHHHHHHhh--CCeEEEE
Confidence 5321 223344455567889999999988531 12333455555444332 3456666
Q ss_pred EcCCCCC---CCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHH-HccCCCHHHH
Q 013128 352 TTNHKEK---LDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELI-KEVNVTPAEV 416 (449)
Q Consensus 352 tTN~~~~---ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~tpa~i 416 (449)
+...|.. +++.|.. || ...+.+..|+.+.|..+++......+..+.+++...+ +...-+..++
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHH
Confidence 6566655 4677777 66 4589999999999999999988877666665554433 3333344444
No 129
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.40 E-value=1.4e-12 Score=127.52 Aligned_cols=152 Identities=20% Similarity=0.308 Sum_probs=101.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc---EEEEeccc
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD---IYDLDLSA 278 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~ 278 (449)
..+|.++++.+|.+++... ...|...+.... -.+++||||||||||+||+.|++....+ ++.++...
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 4578889988888766543 222333333221 3579999999999999999999998765 55554443
Q ss_pred ccChHHHHHHHHcC-------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 279 VQSNSELRFLLLTM-------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 279 ~~~~~~l~~~~~~~-------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
-. -.+++.+|... ..+.|||||||+.+.. . ....||..++. +.+++|+
T Consensus 201 a~-t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----s--------------QQD~fLP~VE~------G~I~lIG 255 (554)
T KOG2028|consen 201 AK-TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----S--------------QQDTFLPHVEN------GDITLIG 255 (554)
T ss_pred cc-hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----h--------------hhhcccceecc------CceEEEe
Confidence 32 24566555544 4689999999998743 1 12236666542 4566775
Q ss_pred -Ec-CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 352 -TT-NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 352 -tT-N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
|| |..-.|..||+. |+ ..+.+...+.+....|+.+-+
T Consensus 256 ATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred cccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 44 444689999999 65 336677788888888887733
No 130
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=4.2e-12 Score=110.10 Aligned_cols=115 Identities=30% Similarity=0.443 Sum_probs=81.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHH-----------HHHHcCCCCceEEeeccchhhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELR-----------FLLLTMPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~-----------~~~~~~~~~~Il~iDeiD~l~~ 308 (449)
.++++++||||||||++++.+++.+ +.+++.+++.......... ........+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4689999999999999999999999 8999999988765432222 1233345789999999998621
Q ss_pred cccccchhhhhccchhhHHHHHHHHHHhcCcccc--CCCCeEEEEEcCCCC--CCCccccCCCccceEEEeCC
Q 013128 309 LQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC--CGEGRIIVFTTNHKE--KLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~~~~iiI~tTN~~~--~ld~aLlrpgR~d~~i~l~~ 377 (449)
.....++..+...... ...+..+|+++|... .+++.+.. |++.++.+++
T Consensus 99 ------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 ------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred ------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1122344444433211 124578888888877 77888887 9988888763
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=3.2e-12 Score=132.85 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=98.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh-------HHHHHHHHcCCCCceEEeeccchhhhccccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN-------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRE 313 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~-------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~ 313 (449)
++++||||||+|||+|++|+|+++ +..+++++...+... .....+.....+..+|+||||+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k---- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK---- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC----
Confidence 579999999999999999999987 678888876554221 111122222456789999999987431
Q ss_pred chhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC-C---CCCCccccCCCccc--eEEEeCCCCHHHHHHHH
Q 013128 314 SSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH-K---EKLDPALLRPGRMD--MHLHMSYCNTSVFKQLA 387 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~-~---~~ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~ 387 (449)
.. +...|+..++.+.. .+..+|+|+|. | ..++++|.+ ||. ..+.++.|+.+.+..++
T Consensus 218 ---------~~---~qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 218 ---------GA---TQEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred ---------hh---hHHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHH
Confidence 11 11223333332222 12345555554 4 356889998 884 89999999999999999
Q ss_pred HHHhCcCCCCCHHHHHH-HHHccCCCHHHH
Q 013128 388 FNYLGISHHYLFEQIEE-LIKEVNVTPAEV 416 (449)
Q Consensus 388 ~~~l~~~~~~l~~~i~~-l~~~~~~tpa~i 416 (449)
+......+..+.+++.. ++....-+..++
T Consensus 281 ~~k~~~~~~~l~~evl~~la~~~~~dir~L 310 (445)
T PRK12422 281 ERKAEALSIRIEETALDFLIEALSSNVKSL 310 (445)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 99887766666655544 444443333333
No 132
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=1.2e-11 Score=133.40 Aligned_cols=156 Identities=20% Similarity=0.258 Sum_probs=108.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEeccc
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLDLSA 278 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~s~ 278 (449)
+.|.+.++..++|...|...+.... +...++|+||||||||.+++.+++++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsg--------pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSG--------SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCC--------CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 7788999999999988887776322 12335799999999999999999887 25678899865
Q ss_pred ccCh-----------------------HHHHHHHHcC----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 279 VQSN-----------------------SELRFLLLTM----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 279 ~~~~-----------------------~~l~~~~~~~----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+.+. ..+..++... ....||+|||||.+... .+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------------~QDV--- 888 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------------TQKV--- 888 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------------HHHH---
Confidence 4322 1122333322 23569999999998641 1122
Q ss_pred HHHHhcCccccCCCCeEEEEEcCC---CCCCCccccCCCccce-EEEeCCCCHHHHHHHHHHHhCc
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNH---KEKLDPALLRPGRMDM-HLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~---~~~ld~aLlrpgR~d~-~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
|++.++.... .+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|++.-+..
T Consensus 889 LYnLFR~~~~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 889 LFTLFDWPTK-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred HHHHHHHhhc-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHh
Confidence 3333332221 2456788898886 5677888887 6543 4888999999999999987764
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.39 E-value=7.6e-12 Score=135.13 Aligned_cols=178 Identities=19% Similarity=0.280 Sum_probs=116.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
..+|.+|++++|.....+.+...+. .+.+..++|+||||||||++|+++++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 3468999999999888877655442 1124579999999999999999998776 3468
Q ss_pred EEEecccccCh-HHH----------------HHHHHc------------CCCCceEEeeccchhhhcccccchhhhhccc
Q 013128 272 YDLDLSAVQSN-SEL----------------RFLLLT------------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQ 322 (449)
Q Consensus 272 ~~l~~s~~~~~-~~l----------------~~~~~~------------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~ 322 (449)
+.+++..+... ..+ ...+.. ....++|||||++.+-.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------- 279 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------- 279 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------
Confidence 88887665311 111 001111 12467999999998742
Q ss_pred hhhHHHHHHHHHHhcCc--------c----------------ccCCCCeEEEE-EcCCCCCCCccccCCCccceEEEeCC
Q 013128 323 EENKVTLSGLLNFIDGL--------W----------------SCCGEGRIIVF-TTNHKEKLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 323 ~~~~~~ls~LL~~ldg~--------~----------------~~~~~~~iiI~-tTN~~~~ld~aLlrpgR~d~~i~l~~ 377 (449)
.....|+..++.- + ...+..+++|+ ||+.++.++++|.+ ||. .++++.
T Consensus 280 ----~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~p 352 (615)
T TIGR02903 280 ----LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEP 352 (615)
T ss_pred ----HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCC
Confidence 1122344444210 0 00112345554 66778899999988 886 578999
Q ss_pred CCHHHHHHHHHHHhCcCCCCCHHHHHHHHHccCCCH
Q 013128 378 CNTSVFKQLAFNYLGISHHYLFEQIEELIKEVNVTP 413 (449)
Q Consensus 378 p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tp 413 (449)
++.++...|+++++...+..+.+++..++.+..+..
T Consensus 353 ls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 353 LTPEDIALIVLNAAEKINVHLAAGVEELIARYTIEG 388 (615)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCCcH
Confidence 999999999999887554455566666665555533
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=4.8e-12 Score=131.69 Aligned_cols=190 Identities=15% Similarity=0.247 Sum_probs=114.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEec
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDL 276 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 276 (449)
+.+..+||+.+..+.-. .....+..+...+. +.++++||||||||||+|++|+|+++ +..++++++
T Consensus 98 l~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNS-FAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchH-HHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 44556899987333322 23333334433222 13569999999999999999999987 456788877
Q ss_pred ccccCh-------HHHHHHHHcC-CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeE
Q 013128 277 SAVQSN-------SELRFLLLTM-PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRI 348 (449)
Q Consensus 277 s~~~~~-------~~l~~~~~~~-~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 348 (449)
.++... ..+....... .++.+|+|||++.+.+.. . +...|+..++.+... ...+
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~-------------~---~q~elf~~~n~l~~~--~k~i 230 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT-------------G---VQTELFHTFNELHDS--GKQI 230 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH-------------H---HHHHHHHHHHHHHHc--CCeE
Confidence 654321 1111122222 257899999999875410 0 112234444433332 2234
Q ss_pred EEEEcCCCCC---CCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHH-HHccCCCHHHHHHHH
Q 013128 349 IVFTTNHKEK---LDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEEL-IKEVNVTPAEVAGEL 420 (449)
Q Consensus 349 iI~tTN~~~~---ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l-~~~~~~tpa~i~~~l 420 (449)
||.+.++|.. +++.+.+ || ...+.+..|+.+.|..|+++.+...+..+.+++... ++...-+..++...|
T Consensus 231 Iitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 231 VICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred EEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHH
Confidence 4444455544 5677887 65 568899999999999999999887666666655443 344444555554444
No 135
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=7.5e-13 Score=115.97 Aligned_cols=105 Identities=29% Similarity=0.401 Sum_probs=75.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHc---------------CCCCceEEeeccchhhhc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLT---------------MPSRSMLVIEDIDCSVKL 309 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~---------------~~~~~Il~iDeiD~l~~~ 309 (449)
++||+||||||||++|+.+|..++.+++.+.++...+..++.....- ..+++|++||||+..-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~- 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP- 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH-
Confidence 48999999999999999999999999999999987776655421110 01578999999997532
Q ss_pred ccccchhhhhccchhhHHHHHHHHHHhcCcccc----------CCC-----CeEEEEEcCCCC----CCCccccCCCcc
Q 013128 310 QNRESSEVQATNQEENKVTLSGLLNFIDGLWSC----------CGE-----GRIIVFTTNHKE----KLDPALLRPGRM 369 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~----------~~~-----~~iiI~tTN~~~----~ld~aLlrpgR~ 369 (449)
.++..|++.+|.-.-. ... +..||+|+|..+ .+++||++ ||
T Consensus 80 -----------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 -----------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3455566666532110 011 379999999998 89999999 87
No 136
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=124.17 Aligned_cols=130 Identities=25% Similarity=0.294 Sum_probs=92.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHH------HHH--H----cCCC---C---ceEEeeccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELR------FLL--L----TMPS---R---SMLVIEDID 304 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~------~~~--~----~~~~---~---~Il~iDeiD 304 (449)
.+.+||.||||||||++|+++|..++.+++.++|+.-....++. ... . -.+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 56899999999999999999999999999999998664433322 110 0 0111 1 399999999
Q ss_pred hhhhcccccchhhhhccchhhHHHHHHHHHHhcC-------cc-ccCCCCeEEEEEcCC-----CCCCCccccCCCccce
Q 013128 305 CSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-------LW-SCCGEGRIIVFTTNH-----KEKLDPALLRPGRMDM 371 (449)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------~~-~~~~~~~iiI~tTN~-----~~~ld~aLlrpgR~d~ 371 (449)
...+ .+.+.||..|+. .. -......++|+|+|. ...|++|+++ ||..
T Consensus 123 ra~p------------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 123 RAPP------------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred cCCH------------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 7643 456667777764 11 122355788888893 4568999999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHHHhC
Q 013128 372 HLHMSYC-NTSVFKQLAFNYLG 392 (449)
Q Consensus 372 ~i~l~~p-~~~~r~~l~~~~l~ 392 (449)
.+.++|| ..++...+......
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 183 RIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEecCCCCchHHHHHHHHhCcc
Confidence 9999999 55555555555554
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=8.5e-12 Score=124.71 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=104.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-------Cc--EEE
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK-------FD--IYD 273 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------~~--~~~ 273 (449)
+.|.+|+.++|.++.++.+.-.+. . +...++||+||||||||++++++|+.+. .+ +..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~---~----------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAI---D----------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHh---c----------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 357889999999999887754221 1 1125799999999999999999999983 21 111
Q ss_pred Ee----cc-----c-------------------ccChHHHHHHHHc-----------CCCCceEEeeccchhhhcccccc
Q 013128 274 LD----LS-----A-------------------VQSNSELRFLLLT-----------MPSRSMLVIEDIDCSVKLQNRES 314 (449)
Q Consensus 274 l~----~s-----~-------------------~~~~~~l~~~~~~-----------~~~~~Il~iDeiD~l~~~~~~~~ 314 (449)
+. +. . +.....+...+.. .....+|+||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------ 142 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------ 142 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH------
Confidence 10 00 0 0001111111111 12357999999998743
Q ss_pred hhhhhccchhhHHHHHHHHHHhcCc---------cccCCCCeEEEEEcCCCC-CCCccccCCCccceEEEeCCCCH-HHH
Q 013128 315 SEVQATNQEENKVTLSGLLNFIDGL---------WSCCGEGRIIVFTTNHKE-KLDPALLRPGRMDMHLHMSYCNT-SVF 383 (449)
Q Consensus 315 ~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~-~ld~aLlrpgR~d~~i~l~~p~~-~~r 383 (449)
.+++.|++.|+.- ....+..+++|+|+|..+ .++++|+. ||.+.+.+++|.. +++
T Consensus 143 ------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~ 208 (334)
T PRK13407 143 ------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETR 208 (334)
T ss_pred ------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHH
Confidence 4566677777532 111234567888888655 58999999 9999999999988 888
Q ss_pred HHHHHHHhC
Q 013128 384 KQLAFNYLG 392 (449)
Q Consensus 384 ~~l~~~~l~ 392 (449)
.+++.+...
T Consensus 209 ~~il~~~~~ 217 (334)
T PRK13407 209 VEVIRRRDA 217 (334)
T ss_pred HHHHHHhhc
Confidence 999988654
No 138
>PRK06620 hypothetical protein; Validated
Probab=99.35 E-value=2.5e-11 Score=114.49 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=94.9
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCC-CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 201 VLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAW-KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
...+..+||+++..+.-. .....+..+...+ +..+ .+.++||||||||||+|++++|+..+..++. ....
T Consensus 8 ~~~~~~tfd~Fvvg~~N~-~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSND-QAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCCCchhhEecccHH-HHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 344556899986544222 2344444443211 2222 3679999999999999999999998763322 1111
Q ss_pred cChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCC-
Q 013128 280 QSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEK- 358 (449)
Q Consensus 280 ~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~- 358 (449)
.. .. .....+|+|||||.+. ...+-.++|.+.. .+..++|.++..|..
T Consensus 79 --~~---~~---~~~~d~lliDdi~~~~------------------~~~lf~l~N~~~e-----~g~~ilits~~~p~~l 127 (214)
T PRK06620 79 --NE---EI---LEKYNAFIIEDIENWQ------------------EPALLHIFNIINE-----KQKYLLLTSSDKSRNF 127 (214)
T ss_pred --ch---hH---HhcCCEEEEeccccch------------------HHHHHHHHHHHHh-----cCCEEEEEcCCCcccc
Confidence 11 11 1245799999999531 1233345554432 234566666655544
Q ss_pred -CCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 359 -LDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 359 -ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
+ |+|+. |+. ..+.+..|+.+.+..++++.....+..+
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l 167 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTI 167 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5 78888 774 4699999999999999987765433333
No 139
>PHA02244 ATPase-like protein
Probab=99.34 E-value=1.8e-11 Score=122.42 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=80.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc----c----cChHHHH--HHHHcCCCCceEEeeccchhhhccccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA----V----QSNSELR--FLLLTMPSRSMLVIEDIDCSVKLQNRE 313 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~----~----~~~~~l~--~~~~~~~~~~Il~iDeiD~l~~~~~~~ 313 (449)
..+||+||||||||++|++||..++.+++.++... + .....+. .++.......+|+||||+.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p----- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP----- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH-----
Confidence 57999999999999999999999999999887321 0 0001111 2333346789999999997643
Q ss_pred chhhhhccchhhHHHHHHHHHHhc--------CccccCCCCeEEEEEcCCC-----------CCCCccccCCCccceEEE
Q 013128 314 SSEVQATNQEENKVTLSGLLNFID--------GLWSCCGEGRIIVFTTNHK-----------EKLDPALLRPGRMDMHLH 374 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~ls~LL~~ld--------g~~~~~~~~~iiI~tTN~~-----------~~ld~aLlrpgR~d~~i~ 374 (449)
.++..|...++ +.. .....+-+|+|+|.+ ..+++|++. || .+|+
T Consensus 195 -------------~vq~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~ 257 (383)
T PHA02244 195 -------------EALIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIE 257 (383)
T ss_pred -------------HHHHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEee
Confidence 12333444443 111 113457889999973 568999999 99 6799
Q ss_pred eCCCCHH
Q 013128 375 MSYCNTS 381 (449)
Q Consensus 375 l~~p~~~ 381 (449)
++||+..
T Consensus 258 ~dyp~~~ 264 (383)
T PHA02244 258 FDYDEKI 264 (383)
T ss_pred CCCCcHH
Confidence 9999843
No 140
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=3.4e-11 Score=125.59 Aligned_cols=188 Identities=13% Similarity=0.230 Sum_probs=116.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEecccc
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSAV 279 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~ 279 (449)
+.+||+.+-.+.- +.....+..+...+ |.. .++++||||+|||||+|++|+++++ +..++++++.++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4688887643332 22334444443322 211 3579999999999999999999976 467788877665
Q ss_pred cCh---------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEE
Q 013128 280 QSN---------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIV 350 (449)
Q Consensus 280 ~~~---------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 350 (449)
... ..+........+..+|+|||++.+.+. ......+-.++|.+ ... + ..+|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k-------------~~~~e~lf~l~N~~---~~~--~-k~iI 243 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK-------------EKTNEIFFTIFNNF---IEN--D-KQLF 243 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC-------------HHHHHHHHHHHHHH---HHc--C-CcEE
Confidence 321 123333444567789999999987431 11122333344444 222 2 2456
Q ss_pred EEcCCC-C---CCCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCC--CCHHHH-HHHHHccCCCHHHHHHHHh
Q 013128 351 FTTNHK-E---KLDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHH--YLFEQI-EELIKEVNVTPAEVAGELM 421 (449)
Q Consensus 351 ~tTN~~-~---~ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~--~l~~~i-~~l~~~~~~tpa~i~~~l~ 421 (449)
+|+|.+ + .+++.|.. || +..+.+..|+.+++.+++++.+...+. .+.+++ +-+++...=++.++...|.
T Consensus 244 ltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 244 FSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred EECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 666543 3 46788888 77 578889999999999999998876442 354443 4444555556666655553
No 141
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.31 E-value=7.1e-11 Score=124.39 Aligned_cols=178 Identities=21% Similarity=0.249 Sum_probs=121.2
Q ss_pred cccccccccCCCCCcccccCCHHHHHHHHHHHHHHHc---C---------h-----hHH----hhhcCCCCcceEEeCCC
Q 013128 194 RWDANNIVLKHPMTFKTLALDSELKREITEDLENFMN---G---------K-----EYY----TRIGRAWKRGYLLYGPP 252 (449)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~---~---------~-----~~~----~~~g~~~~rg~LL~GPp 252 (449)
.|.. ...|..|.+|.+++.+-+.++-+|+.|-- + + +.+ ...+.|.++-+||+|||
T Consensus 260 LWVd----ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 260 LWVD----KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred eeec----ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 6854 88999999999999999999999886631 1 0 011 12356777889999999
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHc----------CCCCceEEeeccchhhhcccccchhhhhccc
Q 013128 253 GTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLT----------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQ 322 (449)
Q Consensus 253 GtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~----------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~ 322 (449)
|-||||||+.+|++.||.+++++.++-.+...+...+.. -.+|.+|||||||-...
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-------------- 401 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-------------- 401 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH--------------
Confidence 999999999999999999999999998876655543322 25799999999996431
Q ss_pred hhhHHHHHHHHHHhc-------Ccccc----------CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHH
Q 013128 323 EENKVTLSGLLNFID-------GLWSC----------CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQ 385 (449)
Q Consensus 323 ~~~~~~ls~LL~~ld-------g~~~~----------~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~ 385 (449)
..+..+|..+. |-... ..=.+-||+.+|..-. |||..---+...|+|+.|......+
T Consensus 402 ----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 402 ----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ----HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHH
Confidence 11222222221 11000 0012578999998544 7775211467788999998876554
Q ss_pred HHHHHhCcCC
Q 013128 386 LAFNYLGISH 395 (449)
Q Consensus 386 l~~~~l~~~~ 395 (449)
=++.....++
T Consensus 476 RL~~IC~rE~ 485 (877)
T KOG1969|consen 476 RLNEICHREN 485 (877)
T ss_pred HHHHHHhhhc
Confidence 4444444443
No 142
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.5e-10 Score=117.54 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=110.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.++++|+|.++.++.+.+.+.. | ..+.++||+||+|+||+++|.++|+.+-.
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999998888765532 1 12568999999999999999999998821
Q ss_pred ----------------------cEEEEecc--cc-------cChHHHHHHHHcC------CCCceEEeeccchhhhcccc
Q 013128 270 ----------------------DIYDLDLS--AV-------QSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNR 312 (449)
Q Consensus 270 ----------------------~~~~l~~s--~~-------~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~ 312 (449)
+++.+... +- -.-.+++.+.... ..+-|++|||+|.+-.
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~---- 155 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA---- 155 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----
Confidence 22333221 10 0113344333222 2567999999998732
Q ss_pred cchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 313 ESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
...+.||..++.. ....++|++|+.++.+.|.+.+ |+ ..+.|+.|+.++..+++.....
T Consensus 156 --------------~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 156 --------------NAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred --------------HHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcc
Confidence 3556788888753 3456888899999999999887 76 6799999999998888877543
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=2.2e-10 Score=114.34 Aligned_cols=148 Identities=14% Similarity=0.240 Sum_probs=107.5
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC--------CcEEEEecc-
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK--------FDIYDLDLS- 277 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--------~~~~~l~~s- 277 (449)
+|++++|.+.+++.+...+.. ...+..|||+||+|+|||++|+++|+.+. .+++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 689999999988888766521 12256899999999999999999999872 245555431
Q ss_pred -cccChHHHHHHHHc---C---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEE
Q 013128 278 -AVQSNSELRFLLLT---M---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIV 350 (449)
Q Consensus 278 -~~~~~~~l~~~~~~---~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 350 (449)
.-.....++.+... . ...-|++||++|.+.. ...+.||..++.. +.+.++|
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------------~a~naLLK~LEep----p~~t~~i 127 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------------QAQNAFLKTIEEP----PKGVFII 127 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH------------------HHHHHHHHHhcCC----CCCeEEE
Confidence 11123445554442 2 2467999999998732 2456789998863 4567888
Q ss_pred EEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 351 FTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 351 ~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
++|++++.+-|.+.+ |+ ..++|+.|+.++....+...+
T Consensus 128 l~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 128 LLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 888889999999998 76 579999999998877776544
No 144
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.30 E-value=1.6e-11 Score=123.18 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=104.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-------cEE----
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-------DIY---- 272 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~---- 272 (449)
...+|..++|.++.|..+...+.. + ...|+||.||+|||||++++++++.+.. +|.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~----p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVID----P---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccC----C---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 345899999999999988765532 1 2358999999999999999999888731 111
Q ss_pred ------------------------EEecccc---cChHH------HHHHHHc-----------CCCCceEEeeccchhhh
Q 013128 273 ------------------------DLDLSAV---QSNSE------LRFLLLT-----------MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 273 ------------------------~l~~s~~---~~~~~------l~~~~~~-----------~~~~~Il~iDeiD~l~~ 308 (449)
.+.+..+ .++.. +...+.. ....++|+||||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0000000 01111 1122111 12468999999998853
Q ss_pred cccccchhhhhccchhhHHHHHHHHHHhcC---------ccccCCCCeEEEEEcCCCC-CCCccccCCCccceEEEeCCC
Q 013128 309 LQNRESSEVQATNQEENKVTLSGLLNFIDG---------LWSCCGEGRIIVFTTNHKE-KLDPALLRPGRMDMHLHMSYC 378 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~~-~ld~aLlrpgR~d~~i~l~~p 378 (449)
.+.+.|++.|+. .....+..+++|+|.|..+ .+.++|+. ||.+++.+.+|
T Consensus 159 ------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~ 218 (350)
T CHL00081 159 ------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTV 218 (350)
T ss_pred ------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCC
Confidence 344557777743 2112233456667777655 59999999 99999999999
Q ss_pred C-HHHHHHHHHHHhC
Q 013128 379 N-TSVFKQLAFNYLG 392 (449)
Q Consensus 379 ~-~~~r~~l~~~~l~ 392 (449)
+ .+.+.+|+++...
T Consensus 219 ~~~~~e~~il~~~~~ 233 (350)
T CHL00081 219 KDPELRVKIVEQRTS 233 (350)
T ss_pred CChHHHHHHHHhhhc
Confidence 8 5999999988654
No 145
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.6e-10 Score=116.65 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=106.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc------------
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD------------ 270 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------ 270 (449)
.||..|+.|+|.++.++.+...+.. . ..+..+||+||+|+|||++|..+|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~----g--------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE----G--------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc----C--------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 6899999999999988877765431 1 124579999999999999999999998431
Q ss_pred ------------------EEEEecc--c-------ccChHHHHHH---HHcC---CCCceEEeeccchhhhcccccchhh
Q 013128 271 ------------------IYDLDLS--A-------VQSNSELRFL---LLTM---PSRSMLVIEDIDCSVKLQNRESSEV 317 (449)
Q Consensus 271 ------------------~~~l~~s--~-------~~~~~~l~~~---~~~~---~~~~Il~iDeiD~l~~~~~~~~~~~ 317 (449)
++.+... . .-.-..++.+ +... ...-|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 1112100 0 0001223322 2222 2456999999998842
Q ss_pred hhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHH
Q 013128 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 318 ~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~ 390 (449)
...+.||..++.. +...++|+.|+.++.+.|.++. |+ .+++++.++.++...++...
T Consensus 156 ---------~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 ---------NAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ---------HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 2456688888763 3456777777889999999988 87 68999999999999888873
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.28 E-value=8.5e-11 Score=131.44 Aligned_cols=161 Identities=16% Similarity=0.244 Sum_probs=110.7
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHH
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSE 284 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 284 (449)
++.++|.+...+.|...+.....+-. ..+ .+...+||+||||||||++|++||+.+ +..++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~~-~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DPN-RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CCC-CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 55788999988888888765432110 000 011358999999999999999999988 45788899887754322
Q ss_pred HHHHH------------------HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-cc---
Q 013128 285 LRFLL------------------LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SC--- 342 (449)
Q Consensus 285 l~~~~------------------~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~--- 342 (449)
...++ ......+||+||||+.+.+ ...+.|++.+|.-. ..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~------------------~v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP------------------DVFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH------------------HHHHHHHHHHhhCceecCCc
Confidence 22222 1122348999999997642 34566788776321 10
Q ss_pred ---CCCCeEEEEEcCCC-------------------------CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 343 ---CGEGRIIVFTTNHK-------------------------EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 343 ---~~~~~iiI~tTN~~-------------------------~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.-.+.+||+|||.. ..+.|+|+. |+|..+.+.+++.+...+|+..++.
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 01235889999972 124578887 9999999999999999999998885
No 147
>PRK09087 hypothetical protein; Validated
Probab=99.27 E-value=4.1e-11 Score=113.93 Aligned_cols=174 Identities=14% Similarity=0.209 Sum_probs=101.7
Q ss_pred cccCCCCCcccccC-CHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc
Q 013128 200 IVLKHPMTFKTLAL-DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA 278 (449)
Q Consensus 200 ~~~~~p~~f~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 278 (449)
+......+|++++. ..+. .....+..+. +. ..+.++||||+|+|||+|++++|+..+..++.. ..
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~--~a~~~l~~~~---------~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~ 77 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNR--AAVSLVDHWP---------NW-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHP--NE 77 (226)
T ss_pred CCCCCCCChhceeecCchH--HHHHHHHhcc---------cC-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HH
Confidence 34455578999875 3222 1333333221 11 123499999999999999999999877654433 22
Q ss_pred ccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCC
Q 013128 279 VQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEK 358 (449)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ 358 (449)
+... .+ ... ...+|+|||+|.+.. .. .+|...++.+... +..+||.++..|..
T Consensus 78 ~~~~-~~----~~~-~~~~l~iDDi~~~~~----------------~~---~~lf~l~n~~~~~--g~~ilits~~~p~~ 130 (226)
T PRK09087 78 IGSD-AA----NAA-AEGPVLIEDIDAGGF----------------DE---TGLFHLINSVRQA--GTSLLMTSRLWPSS 130 (226)
T ss_pred cchH-HH----Hhh-hcCeEEEECCCCCCC----------------CH---HHHHHHHHHHHhC--CCeEEEECCCChHH
Confidence 2211 11 111 125899999997521 01 1234434333221 23444444444432
Q ss_pred ---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHH-HHHccCCCHHHH
Q 013128 359 ---LDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEE-LIKEVNVTPAEV 416 (449)
Q Consensus 359 ---ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~-l~~~~~~tpa~i 416 (449)
..|+|.. |+. ..+++..|+.+.+.+++++.+...+..+.+++.. +++...-+.+++
T Consensus 131 ~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l 192 (226)
T PRK09087 131 WNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAA 192 (226)
T ss_pred hccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHH
Confidence 3688888 774 8899999999999999999987766556554433 334334333333
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.26 E-value=9.2e-11 Score=130.89 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=109.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcc-eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChH-
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRG-YLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNS- 283 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~- 283 (449)
+.++|.++..+.|.+.+.....+-.. ...|.| +||+||||||||.+|+++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~-----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED-----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC-----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh
Confidence 46789999988888888654321100 012344 8999999999999999999999 4578888887764321
Q ss_pred ------------------HHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccC--
Q 013128 284 ------------------ELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC-- 343 (449)
Q Consensus 284 ------------------~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~-- 343 (449)
.|...+. ....+||+|||||.+.+ ...+.|++.+|.-.-..
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~-~~p~svvllDEieka~~------------------~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVR-RKPYSVVLLDEVEKAHP------------------DVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred hccccCCCCCcccccccchHHHHHH-hCCCcEEEEechhhcCH------------------HHHHHHHHHhhcceeecCC
Confidence 1223332 25679999999997532 34566888887432111
Q ss_pred C-----CCeEEEEEcCCCC-----------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 013128 344 G-----EGRIIVFTTNHKE-----------------------------KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 344 ~-----~~~iiI~tTN~~~-----------------------------~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~ 389 (449)
| .+.+||+|||-.. .+.|+|+. |++ .|.|.+++.++..+|+..
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~ 778 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRL 778 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHH
Confidence 1 3578999999521 14577777 997 788999999999999998
Q ss_pred HhC
Q 013128 390 YLG 392 (449)
Q Consensus 390 ~l~ 392 (449)
.+.
T Consensus 779 ~L~ 781 (852)
T TIGR03345 779 KLD 781 (852)
T ss_pred HHH
Confidence 775
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=2e-10 Score=128.82 Aligned_cols=160 Identities=18% Similarity=0.268 Sum_probs=110.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSEL 285 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l 285 (449)
..++|.+...+.+.+.+.....+-. . ...+...+||+||||||||++|+++|..+ +.+++.++++.+......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---D-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---C-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 5688999888888887765432100 0 00112358999999999999999999988 468899998876543222
Q ss_pred HHHH------------------HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-c-c---
Q 013128 286 RFLL------------------LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-S-C--- 342 (449)
Q Consensus 286 ~~~~------------------~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~-~--- 342 (449)
..++ ......+||+|||||.+.+ .+.+.||+.+|.-. . .
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~------------------~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP------------------DVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH------------------HHHHHHHHHHhcCceecCCCe
Confidence 2211 1123457999999997743 35667888886321 1 0
Q ss_pred --CCCCeEEEEEcCCCCC-------------------------CCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 343 --CGEGRIIVFTTNHKEK-------------------------LDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 343 --~~~~~iiI~tTN~~~~-------------------------ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.-.+.+||+|||.... +.|.|+. |+|..+.|.+++.+....|+...+.
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 0135689999997311 3366666 9999999999999999999988775
No 150
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.24 E-value=3.4e-11 Score=122.09 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=51.4
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcC-CCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGR-AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
.++|.++.|+.+...+....++...-..... -.+.++||+||||||||++|+++|..++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 4789999999998777543322111111111 124789999999999999999999999999999987654
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2e-10 Score=124.16 Aligned_cols=160 Identities=20% Similarity=0.295 Sum_probs=118.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEecccccChHHH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSAVQSNSEL 285 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~~~l 285 (449)
+.++|+++..+.|.+.+..-..+-. . ...|-..+||.||+|+|||-||+++|..+. -.++.+|+|++.....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~---d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG---D-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 4578888888888877765433211 0 011123588999999999999999999996 78999999999876666
Q ss_pred HHHHHcC------------------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC---
Q 013128 286 RFLLLTM------------------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG--- 344 (449)
Q Consensus 286 ~~~~~~~------------------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~--- 344 (449)
.++.-.- ...|||+||||+..-+ .+++-||+.||.-.-..+
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp------------------dV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP------------------DVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH------------------HHHHHHHHHhcCCeeecCCCC
Confidence 5554332 2358999999998643 478889999984332222
Q ss_pred ----CCeEEEEEcCCCC----------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 345 ----EGRIIVFTTNHKE----------------------------KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 345 ----~~~iiI~tTN~~~----------------------------~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.+.|||+|||--. ...|+|+. |+|-.|.|.+.+.+...+|+...+.
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 2358999998420 12467777 9999999999999999999998885
No 152
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.23 E-value=1.2e-10 Score=116.72 Aligned_cols=153 Identities=21% Similarity=0.266 Sum_probs=101.1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-------cE--------
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-------DI-------- 271 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~-------- 271 (449)
.|..++|.++.|..+.-.+..+ ...++||.||||+|||++++++++.+.. ++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999998876544321 1357999999999999999999988721 11
Q ss_pred -------------------------EEEecc----cccChHHHHHHHH-----------cCCCCceEEeeccchhhhccc
Q 013128 272 -------------------------YDLDLS----AVQSNSELRFLLL-----------TMPSRSMLVIEDIDCSVKLQN 311 (449)
Q Consensus 272 -------------------------~~l~~s----~~~~~~~l~~~~~-----------~~~~~~Il~iDeiD~l~~~~~ 311 (449)
.++..+ .+.....+...+. ....+.+|+||||+.+..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 111100 1111112222211 123468999999998742
Q ss_pred ccchhhhhccchhhHHHHHHHHHHhcC---------ccccCCCCeEEEEEcCCCC-CCCccccCCCccceEEEeCCCCH-
Q 013128 312 RESSEVQATNQEENKVTLSGLLNFIDG---------LWSCCGEGRIIVFTTNHKE-KLDPALLRPGRMDMHLHMSYCNT- 380 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~~-~ld~aLlrpgR~d~~i~l~~p~~- 380 (449)
.+.+.|++.|+. .....+..+++|+|+|..+ .+.++|+. ||.+++.+++|..
T Consensus 146 ---------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ 208 (337)
T TIGR02030 146 ---------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDV 208 (337)
T ss_pred ---------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCH
Confidence 345667777742 2222233467777777655 68999999 9999999999986
Q ss_pred HHHHHHHHHHhC
Q 013128 381 SVFKQLAFNYLG 392 (449)
Q Consensus 381 ~~r~~l~~~~l~ 392 (449)
+++.+|+++...
T Consensus 209 eer~eIL~~~~~ 220 (337)
T TIGR02030 209 ELRVEIVERRTE 220 (337)
T ss_pred HHHHHHHHhhhh
Confidence 888899987543
No 153
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.22 E-value=6.2e-11 Score=120.19 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=51.3
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhh-cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRI-GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
-++|.++.|+.+.-.+.....+...-..+ +-..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 47899999998877666443322111111 11235789999999999999999999999999999986644
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=2.7e-10 Score=127.32 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=108.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHH-
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSE- 284 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~- 284 (449)
+.++|.++..+.|.+.+.....+-. ..++ +...+||+||||||||++|+++|+.+ +.+++.++++.+.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~---~~~~-p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK---NPNR-PIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc---CCCC-CceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5678888888888777654322100 0011 11348999999999999999999998 46788888887643222
Q ss_pred ------------------HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc----
Q 013128 285 ------------------LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC---- 342 (449)
Q Consensus 285 ------------------l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~---- 342 (449)
+...+. ....+||+|||||.+.+ ...+.|++.+|.-.-.
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~-~~p~~VvllDeieka~~------------------~v~~~Llq~le~g~~~d~~g 645 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVR-KKPYTVVLFDEIEKAHP------------------DIFNLLLQILDDGRLTDSKG 645 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHH-hCCCeEEEECChhhCCH------------------HHHHHHHHHhccCceecCCC
Confidence 222221 23358999999998743 3567788888842210
Q ss_pred ---CCCCeEEEEEcCCCCC-------------------------------------CCccccCCCccceEEEeCCCCHHH
Q 013128 343 ---CGEGRIIVFTTNHKEK-------------------------------------LDPALLRPGRMDMHLHMSYCNTSV 382 (449)
Q Consensus 343 ---~~~~~iiI~tTN~~~~-------------------------------------ld~aLlrpgR~d~~i~l~~p~~~~ 382 (449)
.-.+.++|+|||.... +.|.|+. |+|..|.|.+++.++
T Consensus 646 ~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~ 723 (821)
T CHL00095 646 RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKND 723 (821)
T ss_pred cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHH
Confidence 1145789999985311 2245666 999999999999999
Q ss_pred HHHHHHHHhC
Q 013128 383 FKQLAFNYLG 392 (449)
Q Consensus 383 r~~l~~~~l~ 392 (449)
..+|+...+.
T Consensus 724 l~~Iv~~~l~ 733 (821)
T CHL00095 724 VWEIAEIMLK 733 (821)
T ss_pred HHHHHHHHHH
Confidence 9999988775
No 155
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.22 E-value=2.1e-10 Score=105.89 Aligned_cols=123 Identities=24% Similarity=0.330 Sum_probs=88.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEecccc-cChHHHHHHHHcC-----
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF------------------------DIYDLDLSAV-QSNSELRFLLLTM----- 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~l~~s~~-~~~~~l~~~~~~~----- 292 (449)
+..||||||||+|||++++++++.+.. ++..+....- .....++.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 567999999999999999999999743 2333333221 1223443333222
Q ss_pred -CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccce
Q 013128 293 -PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDM 371 (449)
Q Consensus 293 -~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~ 371 (449)
....|++|||+|.+.. ...+.||..|+.. +...++|++||.+..+.+++.+ |+ .
T Consensus 94 ~~~~kviiide~~~l~~------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE------------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred cCCeEEEEEechhhhCH------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-E
Confidence 3467999999998743 2345688888763 3456778888888999999998 66 4
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 013128 372 HLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 372 ~i~l~~p~~~~r~~l~~~~ 390 (449)
.++++.|+.++...++...
T Consensus 149 ~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc
Confidence 7999999999988877765
No 156
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-10 Score=123.09 Aligned_cols=180 Identities=26% Similarity=0.353 Sum_probs=130.4
Q ss_pred cChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc------ChHHHHHHHHcC--CCCceEEee
Q 013128 230 NGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ------SNSELRFLLLTM--PSRSMLVIE 301 (449)
Q Consensus 230 ~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~l~~~~~~~--~~~~Il~iD 301 (449)
..++.++..+..++++++++||||||||++++++|++ +.....++..... +...++..+... ..|+|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4566778889999999999999999999999999999 5544444444332 234444444444 467999999
Q ss_pred ccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHH
Q 013128 302 DIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTS 381 (449)
Q Consensus 302 eiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~ 381 (449)
++|.+.+.+.. .........++.++..+|++. .+. ++++..||.+..+|+++.+||||+..+.++.|+..
T Consensus 84 ~~~~~~~~~~~-------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (494)
T COG0464 84 EIDALAPKRSS-------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153 (494)
T ss_pred hhhhcccCccc-------cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHH
Confidence 99999875443 123455678899999999987 456 88888999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHH
Q 013128 382 VFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGEL 420 (449)
Q Consensus 382 ~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 420 (449)
.+.+++.................++.. .+++.+++...+
T Consensus 154 ~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 154 GRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 988887765543211112223333322 345556654444
No 157
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.8e-10 Score=113.12 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=112.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc-----EEEEecccccChH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD-----IYDLDLSAVQSNS 283 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~l~~s~~~~~~ 283 (449)
+.+.+-+++.+++...+..++.+.. |.++++|||||||||.+++-++.++.-. ++++||....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 3488889999999999888877553 5569999999999999999999999543 8899988775432
Q ss_pred H-------------------------HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC
Q 013128 284 E-------------------------LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG 338 (449)
Q Consensus 284 ~-------------------------l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 338 (449)
. +...+.......||+|||+|.+.... . .++-.|+...+.
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~------------~---~~LY~L~r~~~~ 152 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD------------G---EVLYSLLRAPGE 152 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc------------c---hHHHHHHhhccc
Confidence 2 12223333457899999999997511 0 233334443332
Q ss_pred ccccCCCCeEEEEEcCCC---CCCCccccCCCcc-ceEEEeCCCCHHHHHHHHHHHhC
Q 013128 339 LWSCCGEGRIIVFTTNHK---EKLDPALLRPGRM-DMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 339 ~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~-d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
. ...+++|+.+|.. +.+||.+.+ ++ ..+|.||+.+.+|...|+..-..
T Consensus 153 ~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 153 N----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred c----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 2 3457888988886 578888876 44 35689999999999999987665
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=1.1e-10 Score=125.27 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=122.3
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
..|.. ...|.++++|++.++..+.+...+..... +....+.++|+||||||||++++.+|++++..++
T Consensus 72 ~pW~e----KyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 72 EPWVE----KYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CchHH----HhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 46865 88999999999999988887766654322 2223456999999999999999999999987654
Q ss_pred E-Ee---cc-----------------cc-cChHHHHHHHHc------------CCCCceEEeeccchhhhcccccchhhh
Q 013128 273 D-LD---LS-----------------AV-QSNSELRFLLLT------------MPSRSMLVIEDIDCSVKLQNRESSEVQ 318 (449)
Q Consensus 273 ~-l~---~s-----------------~~-~~~~~l~~~~~~------------~~~~~Il~iDeiD~l~~~~~~~~~~~~ 318 (449)
. .+ +. .. .....+..++.. ...+.||+||||+.++..
T Consensus 140 Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------- 210 (637)
T TIGR00602 140 EWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------- 210 (637)
T ss_pred HHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------
Confidence 3 11 10 00 011222222222 235679999999987530
Q ss_pred hccchhhHHHHHHHHH-HhcCccccCCCCeEEEEEcCCCC--------------CCCccccCCCccceEEEeCCCCHHHH
Q 013128 319 ATNQEENKVTLSGLLN-FIDGLWSCCGEGRIIVFTTNHKE--------------KLDPALLRPGRMDMHLHMSYCNTSVF 383 (449)
Q Consensus 319 ~~~~~~~~~~ls~LL~-~ldg~~~~~~~~~iiI~tTN~~~--------------~ld~aLlrpgR~d~~i~l~~p~~~~r 383 (449)
....+..+|. .... .+.-.+|+++|..+. .|.++++...|+ .+|.|.+.+....
T Consensus 211 ------~~~~lq~lLr~~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l 279 (637)
T TIGR00602 211 ------DTRALHEILRWKYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIM 279 (637)
T ss_pred ------hHHHHHHHHHHHhhc----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHH
Confidence 1113444554 2211 122223334442221 133677753455 4799999999998
Q ss_pred HHHHHHHhCcCCCCCHHHHHHHHHccCC-CHHHHHHHHh-cCCCHHHHHHHHHHH
Q 013128 384 KQLAFNYLGISHHYLFEQIEELIKEVNV-TPAEVAGELM-KSTNAEVSLNGLVKF 436 (449)
Q Consensus 384 ~~l~~~~l~~~~~~l~~~i~~l~~~~~~-tpa~i~~~l~-~~~~~~~al~~l~~~ 436 (449)
++.+...+..+...... ...+ ++..+..++. ..+|...|+..|+-+
T Consensus 280 ~K~L~rIl~~E~~~~~~-------~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 280 KKFLNRIVTIEAKKNGE-------KIKVPKKTSVELLCQGCSGDIRSAINSLQFS 327 (637)
T ss_pred HHHHHHHHHhhhhcccc-------ccccCCHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 88888888654221111 1112 2333433332 356888888888765
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=3.2e-10 Score=116.32 Aligned_cols=135 Identities=17% Similarity=0.256 Sum_probs=80.2
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc-----EEEEecc-----
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD-----IYDLDLS----- 277 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~l~~s----- 277 (449)
++++.+.++..+.+...+. .+++++|+||||||||++|+++|+.++.. +-.+..+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4556666655555544432 14689999999999999999999998531 1111111
Q ss_pred -cc------c------ChHHHHHHHHc----CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC--
Q 013128 278 -AV------Q------SNSELRFLLLT----MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-- 338 (449)
Q Consensus 278 -~~------~------~~~~l~~~~~~----~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-- 338 (449)
++ . ....+..+... ...++||+||||+..-. ...+..++..|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------------~kiFGel~~lLE~~~ 301 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------------SKVFGEVMMLMEHDK 301 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------------HHhhhhhhhhccccc
Confidence 00 0 01112222222 23689999999997532 1122222332221
Q ss_pred ----------------ccccCCCCeEEEEEcCCCC----CCCccccCCCccceEEEeCC
Q 013128 339 ----------------LWSCCGEGRIIVFTTNHKE----KLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 339 ----------------~~~~~~~~~iiI~tTN~~~----~ld~aLlrpgR~d~~i~l~~ 377 (449)
-.-..+.++.||+|+|..+ .+|.||+| ||.. |++.+
T Consensus 302 rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 302 RGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred cccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 0012356789999999987 79999999 9954 66653
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.17 E-value=1.2e-10 Score=111.59 Aligned_cols=155 Identities=19% Similarity=0.311 Sum_probs=94.4
Q ss_pred HHHHHHHHhCceeEEeeeccccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCC
Q 013128 173 EKAKAIKEESKVVKLHTVMHMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPP 252 (449)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPp 252 (449)
..+..+.++++..++++.- ..|.- ....++.+|+++...++..+.++..+..+..... ....+++|+|||
T Consensus 39 ~~~~~i~~~~~q~~~~~~~-~~s~i--~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~ 108 (244)
T PRK07952 39 IRSAALERENRAMKMQRTF-NRSGI--RPLHQNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKP 108 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcCC--CccccCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCC
Confidence 3334455555444443321 12222 2345678999997665555556666666664321 013589999999
Q ss_pred CCCHHHHHHHHHHHc---CCcEEEEecccccC---------hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhc
Q 013128 253 GTGKSSLIAAMANQL---KFDIYDLDLSAVQS---------NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQAT 320 (449)
Q Consensus 253 GtGKT~la~aiA~~l---~~~~~~l~~s~~~~---------~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~ 320 (449)
|||||+|+.|||+++ +..++.++..++.. +.....++....+..+|+|||+++...
T Consensus 109 GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~------------ 176 (244)
T PRK07952 109 GTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE------------ 176 (244)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC------------
Confidence 999999999999999 67788887666532 112334555666889999999988531
Q ss_pred cchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 321 NQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 321 ~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
.......+..+++.- . ....-+|+|||..
T Consensus 177 -s~~~~~~l~~Ii~~R---y---~~~~~tiitSNl~ 205 (244)
T PRK07952 177 -SRYEKVIINQIVDRR---S---SSKRPTGMLTNSN 205 (244)
T ss_pred -CHHHHHHHHHHHHHH---H---hCCCCEEEeCCCC
Confidence 112223444444432 1 1235678889875
No 161
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.16 E-value=8.9e-11 Score=106.79 Aligned_cols=109 Identities=25% Similarity=0.377 Sum_probs=77.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC----cEEEEecccccC----hHHHHHHHHcCC------CCceEEeeccchhhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF----DIYDLDLSAVQS----NSELRFLLLTMP------SRSMLVIEDIDCSVK 308 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~----~~~~l~~s~~~~----~~~l~~~~~~~~------~~~Il~iDeiD~l~~ 308 (449)
...+||.||+|||||.||+++|..+.. +++.+|++.+.. ...+..++.... ...||+|||||...+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 456999999999999999999999996 999999999987 444555554443 346999999999875
Q ss_pred cccccchhhhhccchhhHHHHHHHHHHhcCccccCC-------CCeEEEEEcCCCCC
Q 013128 309 LQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG-------EGRIIVFTTNHKEK 358 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~-------~~~iiI~tTN~~~~ 358 (449)
. .... .+.....+.+.||+.||+-.-... .+.++|+|+|--..
T Consensus 83 ~-~~~~------~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 83 S-NSGG------ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp T-TTTC------SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred c-cccc------chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 3 1111 122334567888998874322111 35789999997543
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.16 E-value=6.6e-10 Score=111.14 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=51.4
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-------cEEEEec
Q 013128 207 TFK-TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-------DIYDLDL 276 (449)
Q Consensus 207 ~f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~l~~ 276 (449)
-|+ +++|+++.++++.+.+.....+. ...++.++|+||||||||++|+++|+.++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~-------~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGL-------EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 89999999999998887666421 123567999999999999999999999976 8888866
No 163
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.16 E-value=4.2e-11 Score=102.23 Aligned_cols=106 Identities=25% Similarity=0.298 Sum_probs=62.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHH--HHc-------CC---CCceEEeeccchhhhcccc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFL--LLT-------MP---SRSMLVIEDIDCSVKLQNR 312 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~--~~~-------~~---~~~Il~iDeiD~l~~~~~~ 312 (449)
++||+|+||+|||++|+++|..++.++..+.++.-...+++.-. +.. .. -..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 48999999999999999999999999999987643222222200 000 01 136999999987643
Q ss_pred cchhhhhccchhhHHHHHHHHHHhc-------CccccCCCCeEEEEEcCCCC-----CCCccccCCCccc
Q 013128 313 ESSEVQATNQEENKVTLSGLLNFID-------GLWSCCGEGRIIVFTTNHKE-----KLDPALLRPGRMD 370 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~LL~~ld-------g~~~~~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d 370 (449)
.+.+.||..|. |.....++..+||+|.|..+ .|+.|++. ||-
T Consensus 77 --------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 77 --------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp --------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred --------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 46778888875 33334456688999999876 68889988 873
No 164
>PRK08116 hypothetical protein; Validated
Probab=99.14 E-value=1.9e-10 Score=112.07 Aligned_cols=149 Identities=18% Similarity=0.293 Sum_probs=87.7
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN 282 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~ 282 (449)
.+|++....++.. .+...+..+...- .... ..+.|++|+||||||||+|+.|+|+++ +.+++.++..++...
T Consensus 82 ~tFdnf~~~~~~~-~a~~~a~~y~~~~---~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGSE-KAYKIARKYVKKF---EEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHHH-HHHHHHHHHHHHH---Hhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4777776444432 2333444444321 1111 224689999999999999999999997 678888876654221
Q ss_pred ----------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 283 ----------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 283 ----------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
.....++....+..+|+|||+..... .......|.+.+|.... .+..+|+|
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~----------------t~~~~~~l~~iin~r~~---~~~~~IiT 217 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD----------------TEWAREKVYNIIDSRYR---KGLPTIVT 217 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC----------------CHHHHHHHHHHHHHHHH---CCCCEEEE
Confidence 11223444455677999999964211 11223445566665432 33467888
Q ss_pred cCCC-CC----CCccccCCCcc---ceEEEeCCCCH
Q 013128 353 TNHK-EK----LDPALLRPGRM---DMHLHMSYCNT 380 (449)
Q Consensus 353 TN~~-~~----ld~aLlrpgR~---d~~i~l~~p~~ 380 (449)
||.+ +. ++.++.. |+ ...|.++-++.
T Consensus 218 sN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 218 TNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred CCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 8875 22 5667776 64 34456655553
No 165
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.8e-09 Score=107.59 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=106.0
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC------------------
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK------------------ 268 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------------------ 268 (449)
.|++|+|.+++++.+...+..- ..+.+|||+||+|+||+++|.++|+.+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4889999999998887766421 1246899999999999999999999972
Q ss_pred CcEEEEeccccc-----------------------ChHHHHHH---HHcC---CCCceEEeeccchhhhcccccchhhhh
Q 013128 269 FDIYDLDLSAVQ-----------------------SNSELRFL---LLTM---PSRSMLVIEDIDCSVKLQNRESSEVQA 319 (449)
Q Consensus 269 ~~~~~l~~s~~~-----------------------~~~~l~~~---~~~~---~~~~Il~iDeiD~l~~~~~~~~~~~~~ 319 (449)
.+++.+...... .-..++.+ +... ...-|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 133433332100 01123333 2222 2467999999998742
Q ss_pred ccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 320 TNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 320 ~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
...+.||..|+.. + ..++|++|+.++.|-|.+++ |+ ..++|+.++.++..+++.....
T Consensus 139 -------~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 139 -------AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred -------HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhc
Confidence 3456799999864 3 44778888899999999998 77 6799999999998888887643
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=2.6e-09 Score=107.33 Aligned_cols=146 Identities=18% Similarity=0.299 Sum_probs=101.8
Q ss_pred CcccccC-CHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC----------------
Q 013128 207 TFKTLAL-DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF---------------- 269 (449)
Q Consensus 207 ~f~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---------------- 269 (449)
.|++|.| .+.+++.+...+. .. ..+..||||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----KN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677887 6666666655442 11 12568999999999999999999999732
Q ss_pred --------cEEEEecccc-cChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 270 --------DIYDLDLSAV-QSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 270 --------~~~~l~~s~~-~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
++..+....- .....++.+.... ...-|++|||+|.+.. ...+.||.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~------------------~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA------------------SAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH------------------HHHHHHHH
Confidence 3444433211 1123444443322 2456999999998742 34567999
Q ss_pred HhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 013128 335 FIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 335 ~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~ 389 (449)
.|+.. ++..++|++|+.++.|-|++++ |+ ..++++.|+.++..+.++.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 99863 4567888899999999999998 76 5699999999887666654
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.5e-09 Score=106.09 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=92.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC------------------------cEEEEeccc---ccChHHHHHHHHcC---
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF------------------------DIYDLDLSA---VQSNSELRFLLLTM--- 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~l~~s~---~~~~~~l~~~~~~~--- 292 (449)
+.+|||+||+|+||+++|+++|+.+.. +++.+.... .-.-..++.+....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 568999999999999999999999843 556664432 12234455443332
Q ss_pred ---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013128 293 ---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRM 369 (449)
Q Consensus 293 ---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~ 369 (449)
...-|++||++|.+.. ...+.||..++.. +++.++|++|+.++.|.|.+++ |+
T Consensus 102 ~~~~~~kv~iI~~a~~m~~------------------~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR------------------NAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred cccCCCeEEEECChhhCCH------------------HHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hc
Confidence 2456889999998843 3557799999863 4568899999999999999999 88
Q ss_pred ceEEEeCCCCHHHHHHHHHHH
Q 013128 370 DMHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 370 d~~i~l~~p~~~~r~~l~~~~ 390 (449)
. .+.|+.|+.++..+.+...
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHh
Confidence 4 4999999998877776654
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.10 E-value=6.2e-09 Score=103.78 Aligned_cols=142 Identities=19% Similarity=0.246 Sum_probs=98.3
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---------------------
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK--------------------- 268 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--------------------- 268 (449)
++++.+.....+........+ .+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-----------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-----------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-----------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 455555555555554443221 133699999999999999999999997
Q ss_pred ---CcEEEEecccccCh----HHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHH
Q 013128 269 ---FDIYDLDLSAVQSN----SELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNF 335 (449)
Q Consensus 269 ---~~~~~l~~s~~~~~----~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 335 (449)
.+++.++.++.... ..++.+.... ...-|++|||+|.+.. ...+.|+..
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------------~A~nallk~ 132 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------------DAANALLKT 132 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------------HHHHHHHHH
Confidence 68899998887652 3344333322 2457999999999853 234557777
Q ss_pred hcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHH
Q 013128 336 IDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLA 387 (449)
Q Consensus 336 ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~ 387 (449)
+..- +....+|++||.++.+-|.+.+ |+ ..+.|+.|+...+....
T Consensus 133 lEep----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 133 LEEP----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred hccC----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 7643 4567889999999999998888 76 55888776554444333
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.09 E-value=6.1e-10 Score=115.12 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=81.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC--cEEEEecc-----cccChHHHHH-----HHHc-----CCCCceEEeeccch
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF--DIYDLDLS-----AVQSNSELRF-----LLLT-----MPSRSMLVIEDIDC 305 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s-----~~~~~~~l~~-----~~~~-----~~~~~Il~iDeiD~ 305 (449)
..++||+||||||||++|++++..++. ++..+.+. ++.....+.. .+.. .....+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 457999999999999999999998753 23322221 1111111111 1111 11234999999986
Q ss_pred hhhcccccchhhhhccchhhHHHHHHHHHHhc-CccccCC-----CCeEEEEEcCCCCC---CCccccCCCccceEEEeC
Q 013128 306 SVKLQNRESSEVQATNQEENKVTLSGLLNFID-GLWSCCG-----EGRIIVFTTNHKEK---LDPALLRPGRMDMHLHMS 376 (449)
Q Consensus 306 l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~~~~~-----~~~iiI~tTN~~~~---ld~aLlrpgR~d~~i~l~ 376 (449)
+. ..+.+.||..|. +.....+ ..+++++|||.... ..+|+.. ||-+.+.+|
T Consensus 119 as------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp 178 (498)
T PRK13531 119 AG------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLD 178 (498)
T ss_pred CC------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECC
Confidence 53 256788998884 3222111 23577778885322 3358999 999999999
Q ss_pred CCC-HHHHHHHHHHH
Q 013128 377 YCN-TSVFKQLAFNY 390 (449)
Q Consensus 377 ~p~-~~~r~~l~~~~ 390 (449)
+|+ .++++.|+...
T Consensus 179 ~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 179 KVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCchHHHHHHHHcc
Confidence 997 57778888764
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=1.1e-09 Score=93.71 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=71.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc---EEEEecccccC--------------------hHHHHHHHHcC--CCCce
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD---IYDLDLSAVQS--------------------NSELRFLLLTM--PSRSM 297 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~~--------------------~~~l~~~~~~~--~~~~I 297 (449)
+..++|+||||||||++++++|..+... ++.++++.... .......+... ..+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999775 88887765422 12222222222 23699
Q ss_pred EEeeccchhhhcccccchhhhhccchhhHHHHHHH--HHHhcCccccCCCCeEEEEEcCC-CCCCCccccCCCccceEEE
Q 013128 298 LVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGL--LNFIDGLWSCCGEGRIIVFTTNH-KEKLDPALLRPGRMDMHLH 374 (449)
Q Consensus 298 l~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~L--L~~ldg~~~~~~~~~iiI~tTN~-~~~ld~aLlrpgR~d~~i~ 374 (449)
|+|||++.+..... ....... ....... .......+|+++|. ....+..+.+ |++.++.
T Consensus 82 iiiDei~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 143 (148)
T smart00382 82 LILDEITSLLDAEQ--------------EALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143 (148)
T ss_pred EEEECCcccCCHHH--------------HHHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhh--ccceEEE
Confidence 99999998864111 0000000 0000000 11245688888886 3334444444 8888888
Q ss_pred eCCC
Q 013128 375 MSYC 378 (449)
Q Consensus 375 l~~p 378 (449)
++.+
T Consensus 144 ~~~~ 147 (148)
T smart00382 144 LLLI 147 (148)
T ss_pred ecCC
Confidence 7654
No 171
>PRK08181 transposase; Validated
Probab=99.06 E-value=6.3e-10 Score=108.21 Aligned_cols=124 Identities=17% Similarity=0.299 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhCceeEEeeeccccccccccccCCCCCcccccCC--HHHHHHHH---HHHHHHHcChhHHhhh
Q 013128 164 LNLYLPHVLEKAKAIKEESKVVKLHTVMHMRWDANNIVLKHPMTFKTLALD--SELKREIT---EDLENFMNGKEYYTRI 238 (449)
Q Consensus 164 ~~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~p~~f~~l~g~--~~~k~~i~---~~l~~~~~~~~~~~~~ 238 (449)
...||..+++.....+++++..+.... ..+..+.+|+++.-. +.+.+... ..+..|+.
T Consensus 42 ~~e~L~~ll~~E~~~R~~~~~~r~lk~---------A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~~-------- 104 (269)
T PRK08181 42 AARFLAAIAEHELAERARRRIERHLAE---------AHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWLA-------- 104 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCCCCCHhhCCccCCCCCCHHHHHHHHHHHHHHh--------
Confidence 456788888877776665544322211 112233455554221 11112222 22223332
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC-------hHHHHHHHHcCCCCceEEeeccchhh
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS-------NSELRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-------~~~l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
...+++|+||||||||+|+.|+|+++ |+.++.++..++.. +..+...+....+..+|+|||++...
T Consensus 105 ---~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 ---KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred ---cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 24689999999999999999999876 67777777655432 12334456666788999999998753
No 172
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.06 E-value=1.3e-09 Score=115.65 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=98.8
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhc--CCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE----ecccccCh-
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIG--RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL----DLSAVQSN- 282 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l----~~s~~~~~- 282 (449)
.+.|.+.+|..+.-.+ +.+......-| +....++||+|+||||||++++++++......+.. ++..+...
T Consensus 204 ~i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 204 SIYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred cccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 4677788777665433 22211000001 11123599999999999999999999886554432 11112110
Q ss_pred ------H--HHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC---------ccccCCC
Q 013128 283 ------S--ELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG---------LWSCCGE 345 (449)
Q Consensus 283 ------~--~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~ 345 (449)
. .+..-........+++|||+|.+.. .+.+.|+..|+. .....+.
T Consensus 281 ~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~ 342 (509)
T smart00350 281 TRDPETREFTLEGGALVLADNGVCCIDEFDKMDD------------------SDRTAIHEAMEQQTISIAKAGITTTLNA 342 (509)
T ss_pred eEccCcceEEecCccEEecCCCEEEEechhhCCH------------------HHHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence 0 0000011123578999999998743 234556666643 2222234
Q ss_pred CeEEEEEcCCCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHHHhC
Q 013128 346 GRIIVFTTNHKE-------------KLDPALLRPGRMDMHLHM-SYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 346 ~~iiI~tTN~~~-------------~ld~aLlrpgR~d~~i~l-~~p~~~~r~~l~~~~l~ 392 (449)
...||+|+|..+ .|++++++ |||..+.+ ++|+.+..+.|+++.+.
T Consensus 343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 567899999763 58999999 99886555 88999999999998764
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.05 E-value=7.5e-10 Score=120.34 Aligned_cols=153 Identities=19% Similarity=0.212 Sum_probs=102.9
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-------------------
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL------------------- 267 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------------------- 267 (449)
.|..|+|.+..|..+.-.+. .+. ..||||.||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 57899999988876643322 111 2479999999999999999999998
Q ss_pred ----------------CCcEEEEeccccc----ChHHHHHHHH-----------cCCCCceEEeeccchhhhcccccchh
Q 013128 268 ----------------KFDIYDLDLSAVQ----SNSELRFLLL-----------TMPSRSMLVIEDIDCSVKLQNRESSE 316 (449)
Q Consensus 268 ----------------~~~~~~l~~s~~~----~~~~l~~~~~-----------~~~~~~Il~iDeiD~l~~~~~~~~~~ 316 (449)
..+++.+.++... ....+...+. ......|||||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2456665544321 1112222221 112457999999998843
Q ss_pred hhhccchhhHHHHHHHHHHhcCc---------cccCCCCeEEEEEcCCC-CCCCccccCCCccceEEEeCCCC-HHHHHH
Q 013128 317 VQATNQEENKVTLSGLLNFIDGL---------WSCCGEGRIIVFTTNHK-EKLDPALLRPGRMDMHLHMSYCN-TSVFKQ 385 (449)
Q Consensus 317 ~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~-~~ld~aLlrpgR~d~~i~l~~p~-~~~r~~ 385 (449)
.+++.|++.|+.- .......+++|+|+|.. ..+.++|+. ||+++|.++++. .+++.+
T Consensus 141 ----------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~ 208 (633)
T TIGR02442 141 ----------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVE 208 (633)
T ss_pred ----------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHH
Confidence 3556688887521 11112346888888864 358899999 999999999886 477788
Q ss_pred HHHHHhC
Q 013128 386 LAFNYLG 392 (449)
Q Consensus 386 l~~~~l~ 392 (449)
++...+.
T Consensus 209 il~~~~~ 215 (633)
T TIGR02442 209 IIRRRLA 215 (633)
T ss_pred HHHHHHh
Confidence 8876544
No 174
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-09 Score=118.10 Aligned_cols=201 Identities=19% Similarity=0.198 Sum_probs=130.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEe
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLD 275 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~ 275 (449)
-.+|.++|-++..+++++.|.+.. +++-+|.|+||+|||.++..+|... +..++.+|
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 357889999999898888875433 4678999999999999999999988 57899999
Q ss_pred cccccC--------hHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCC
Q 013128 276 LSAVQS--------NSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGE 345 (449)
Q Consensus 276 ~s~~~~--------~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 345 (449)
++.+.. +..++.++.... .+.|||||||+.+.+.....+. . .-.-+-|...+. .|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a--------~DAaNiLKPaLA-----RGe 299 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-A--------MDAANLLKPALA-----RGE 299 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-c--------cchhhhhHHHHh-----cCC
Confidence 888854 344555554432 3899999999999875443221 0 011122333332 233
Q ss_pred CeEEEEEcCCC----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC--CCC--CHHHHHHHHHccCCCHHHHH
Q 013128 346 GRIIVFTTNHK----EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS--HHY--LFEQIEELIKEVNVTPAEVA 417 (449)
Q Consensus 346 ~~iiI~tTN~~----~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~--~~~--l~~~i~~l~~~~~~tpa~i~ 417 (449)
-++|-+||-.- =.=|+||-| ||. .|.+..|+.++-..|++-.-... +|. +.++.- ...++++
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al-------~aAv~LS 369 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEAL-------VAAVTLS 369 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHH-------HHHHHHH
Confidence 34444455221 123899999 994 69999999999888887433321 222 222211 1223344
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHh
Q 013128 418 GELMKS-TNAEVSLNGLVKFLHAKMTQ 443 (449)
Q Consensus 418 ~~l~~~-~~~~~al~~l~~~l~~~~~~ 443 (449)
...+.+ .-|+.|++-+.++....+..
T Consensus 370 ~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 370 DRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 444433 36888888888877777664
No 175
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.04 E-value=1.6e-09 Score=100.64 Aligned_cols=187 Identities=16% Similarity=0.261 Sum_probs=110.2
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-C----CcEEEE
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-K----FDIYDL 274 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~----~~~~~l 274 (449)
+..++|..+.+++|.++..+.+.-. .+... -.++++.||||||||+-+.++|++| | --+..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~vi----a~~gn---------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVI----AKEGN---------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHH----HHcCC---------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 4489999999999999887665432 22111 2469999999999999999999998 3 245677
Q ss_pred ecccccChHHHH---HHHHcCC------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCC
Q 013128 275 DLSAVQSNSELR---FLLLTMP------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGE 345 (449)
Q Consensus 275 ~~s~~~~~~~l~---~~~~~~~------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 345 (449)
+.|+-....-.+ ..|+... ..-||++||.|.+.. ..+.. |-..|+ +++ .
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~---------------gAQQA---lRRtME-iyS---~ 142 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA---------------GAQQA---LRRTME-IYS---N 142 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh---------------HHHHH---HHHHHH-HHc---c
Confidence 777765544333 2333321 345999999998753 11112 222222 222 1
Q ss_pred CeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHccCCCHHHHHHHHh-cCC
Q 013128 346 GRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEVNVTPAEVAGELM-KST 424 (449)
Q Consensus 346 ~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~-~~~ 424 (449)
..-+.+++|..+++=+.+.+ |+.. +.+...+.++...-+..... .++..+|+.-+..++. ..+
T Consensus 143 ttRFalaCN~s~KIiEPIQS--RCAi-LRysklsd~qiL~Rl~~v~k-------------~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 143 TTRFALACNQSEKIIEPIQS--RCAI-LRYSKLSDQQILKRLLEVAK-------------AEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred cchhhhhhcchhhhhhhHHh--hhHh-hhhcccCHHHHHHHHHHHHH-------------HhCCCCCcchHHHhhhhccc
Confidence 23456678887777666666 5532 45555565543333332222 2334455544433333 234
Q ss_pred CHHHHHHHHHHHH
Q 013128 425 NAEVSLNGLVKFL 437 (449)
Q Consensus 425 ~~~~al~~l~~~l 437 (449)
|-.+||++|+.-+
T Consensus 207 DMRQalNnLQst~ 219 (333)
T KOG0991|consen 207 DMRQALNNLQSTV 219 (333)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666665544
No 176
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.03 E-value=4.4e-09 Score=105.53 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=105.7
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChH
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNS 283 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 283 (449)
.|++++|.....+.+++.+...... ...|||.|++||||+++|++|-... +.+++.++|..+..+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~- 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN- 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH-
Confidence 4678999988888888888777643 3579999999999999999998766 368999999987532
Q ss_pred HHHH-HH-----------------HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC
Q 013128 284 ELRF-LL-----------------LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG 344 (449)
Q Consensus 284 ~l~~-~~-----------------~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~ 344 (449)
.+.. +| ......+.|||||||.+.. .....|++.++.-. ...+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~------------------~~Q~~L~~~l~~~~~~~~g 133 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------LVQEKLLRVIEYGELERVG 133 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH------------------HHHHHHHHHHhcCcEEeCC
Confidence 2222 11 1233568899999999853 23345666665321 1111
Q ss_pred ------CCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 345 ------EGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 345 ------~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
..+-||+||+.. ..+.+.|.. |+ ..+|++|+... ++...|+..|+.
T Consensus 134 ~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 134 GSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred CCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 135677777653 345566776 77 56888888765 566777777764
No 177
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.9e-08 Score=100.96 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=90.4
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCC-------------------------cEEEEeccc------------------
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKF-------------------------DIYDLDLSA------------------ 278 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~-------------------------~~~~l~~s~------------------ 278 (449)
.+.+|||+||+|+||+++|.++|+.+.. +++.+....
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 3678999999999999999999998833 233332211
Q ss_pred -----------ccChHHHHHHHHcCC------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc
Q 013128 279 -----------VQSNSELRFLLLTMP------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS 341 (449)
Q Consensus 279 -----------~~~~~~l~~~~~~~~------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 341 (449)
.-.-.+++.+..... ..-|++||++|.+.. ..-+.||..++..
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------------~AaNaLLKtLEEP-- 159 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------------AAANALLKTLEEP-- 159 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH------------------HHHHHHHHHhcCC--
Confidence 011234444433321 345888899888743 3567799999863
Q ss_pred cCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHH
Q 013128 342 CCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 342 ~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~ 390 (449)
+.++++|++|++++.|.|.+++ |+ ..+.|+.|+.++..+.+...
T Consensus 160 --p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 --PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred --CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 5678999999999999999999 88 68999999998888777653
No 178
>PRK12377 putative replication protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=103.24 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=82.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
...+|++....++..+.+...+..+...-. . ...+++|+||||||||+|+.|||+++ +..++.+...++.
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~---~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELM---T----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHH---h----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 344788876543333334444444433211 1 13689999999999999999999998 5677777665553
Q ss_pred Ch--------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 281 SN--------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 281 ~~--------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
.. ......+....+..+|+|||++.... ..... ..|.+.+|.-.. ...-+|+|
T Consensus 142 ~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~-------------s~~~~---~~l~~ii~~R~~---~~~ptiit 202 (248)
T PRK12377 142 SRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE-------------TKNEQ---VVLNQIIDRRTA---SMRSVGML 202 (248)
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC-------------CHHHH---HHHHHHHHHHHh---cCCCEEEE
Confidence 21 12334566677889999999976421 11122 234455554322 23457889
Q ss_pred cCCC-----CCCCccccC
Q 013128 353 TNHK-----EKLDPALLR 365 (449)
Q Consensus 353 TN~~-----~~ld~aLlr 365 (449)
||.. +.++.+++.
T Consensus 203 SNl~~~~l~~~~~~ri~d 220 (248)
T PRK12377 203 TNLNHEAMSTLLGERVMD 220 (248)
T ss_pred cCCCHHHHHHHhhHHHHH
Confidence 9975 234455555
No 179
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.99 E-value=9.2e-09 Score=110.07 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=105.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
...+|+.++|.....+.+++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3457999999999999998888776542 3579999999999999999999886 5699999999885
Q ss_pred ChHHHHH-HHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc-cc
Q 013128 281 SNSELRF-LLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL-WS 341 (449)
Q Consensus 281 ~~~~l~~-~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~ 341 (449)
.. .+.. +|. .....++|||||||.+.. .....|+..++.- ..
T Consensus 260 ~~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------------------~~Q~~Ll~~l~~~~~~ 320 (534)
T TIGR01817 260 ET-LLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------------------AFQAKLLRVLQEGEFE 320 (534)
T ss_pred HH-HHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------------------HHHHHHHHHHhcCcEE
Confidence 42 2222 211 123568999999999853 2334567777532 11
Q ss_pred cCCC------CeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCC--HHHHHHHHHHHhC
Q 013128 342 CCGE------GRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCN--TSVFKQLAFNYLG 392 (449)
Q Consensus 342 ~~~~------~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~--~~~r~~l~~~~l~ 392 (449)
..++ .+-+|+||+.. ..+.+.|.. |+ ...|.+|+.. .++...|+..|+.
T Consensus 321 ~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 321 RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred ECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 1111 35567776653 123334433 44 3578888876 4667777777775
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.98 E-value=8.7e-09 Score=92.95 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=80.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC-----------------------CcEEEEecccc---cChHHHHHHHHcCC---
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK-----------------------FDIYDLDLSAV---QSNSELRFLLLTMP--- 293 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~-----------------------~~~~~l~~s~~---~~~~~l~~~~~~~~--- 293 (449)
+..+||+||+|+||+++|.++|+.+- .+++.++.... .....++.+.....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 56799999999999999999999881 35666665543 23455665555442
Q ss_pred ---CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccc
Q 013128 294 ---SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370 (449)
Q Consensus 294 ---~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d 370 (449)
..-|++|||+|.+.. ...+.||..|+.. +...++|++|+.++.|-|.+++ |+
T Consensus 99 ~~~~~KviiI~~ad~l~~------------------~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S--Rc- 153 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLTE------------------EAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS--RC- 153 (162)
T ss_dssp TTSSSEEEEEETGGGS-H------------------HHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT--TS-
T ss_pred hcCCceEEEeehHhhhhH------------------HHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh--hc-
Confidence 356999999998843 4567899999874 4678999999999999999998 77
Q ss_pred eEEEeCCC
Q 013128 371 MHLHMSYC 378 (449)
Q Consensus 371 ~~i~l~~p 378 (449)
..+.|+..
T Consensus 154 ~~i~~~~l 161 (162)
T PF13177_consen 154 QVIRFRPL 161 (162)
T ss_dssp EEEEE---
T ss_pred eEEecCCC
Confidence 55777654
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.98 E-value=1.4e-08 Score=101.93 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=106.0
Q ss_pred cCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHH-H
Q 013128 212 ALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELR-F 287 (449)
Q Consensus 212 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~-~ 287 (449)
+|.....+.+++.+...... ...+||.|++||||+++|++|.... +.+++.++|..+... .+. .
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~-~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN-LLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH-HHHHH
Confidence 45555666677766655432 3579999999999999999998776 469999999987532 222 2
Q ss_pred HH-----------------HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-cc------C
Q 013128 288 LL-----------------LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SC------C 343 (449)
Q Consensus 288 ~~-----------------~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~------~ 343 (449)
+| ......+.|||||||.+.. .....|+..++.-. .. .
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~------------------~~Q~~Ll~~l~~~~~~~~g~~~~~ 131 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL------------------LVQEKLLRVIEYGEFERVGGSQTL 131 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCH------------------HHHHHHHHHHHcCcEEecCCCcee
Confidence 22 1233578999999998843 23344666664211 11 1
Q ss_pred CCCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCC--HHHHHHHHHHHhCcC------C--CCCHHHHHHH
Q 013128 344 GEGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCN--TSVFKQLAFNYLGIS------H--HYLFEQIEEL 405 (449)
Q Consensus 344 ~~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~--~~~r~~l~~~~l~~~------~--~~l~~~i~~l 405 (449)
...+-||++||.. ..+.+.|.. |+ ...|++|+.. .++...|+..|+... . ..+.++..+.
T Consensus 132 ~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~ 209 (329)
T TIGR02974 132 QVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQ 209 (329)
T ss_pred ccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHH
Confidence 1235677777653 234566666 67 4578888877 467777777776531 1 2355555555
Q ss_pred HHccCC
Q 013128 406 IKEVNV 411 (449)
Q Consensus 406 ~~~~~~ 411 (449)
+....|
T Consensus 210 L~~y~W 215 (329)
T TIGR02974 210 LLEYHW 215 (329)
T ss_pred HHhCCC
Confidence 555544
No 182
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.98 E-value=2.7e-09 Score=105.84 Aligned_cols=97 Identities=23% Similarity=0.357 Sum_probs=67.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS 281 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 281 (449)
..+|+++...+..+..+......|+... .. + +..+|++||||||||||+|+.|||+++ |..+..+....+..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 4678888766545555555555555422 11 1 235799999999999999999999999 67777776555421
Q ss_pred -------hHHHHHHHHcCCCCceEEeeccchh
Q 013128 282 -------NSELRFLLLTMPSRSMLVIEDIDCS 306 (449)
Q Consensus 282 -------~~~l~~~~~~~~~~~Il~iDeiD~l 306 (449)
...+...+....+..+|+||||..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 1234456666778999999999864
No 183
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.97 E-value=9.1e-09 Score=108.68 Aligned_cols=210 Identities=16% Similarity=0.239 Sum_probs=123.3
Q ss_pred ccccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 191 MHMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 191 ~~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
+...|.. ...|.+.++|+......++|..++...+. +....+-+||+||||||||++++.+|+++++.
T Consensus 5 ~~~~W~~----ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 5 ESEPWVE----KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred ccCccch----hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4567865 88999999999998888888888876443 22334568899999999999999999999988
Q ss_pred EEEEe-cccc----------cC----h----H---HHHHH-HHc-------------CCCCceEEeeccchhhhcccccc
Q 013128 271 IYDLD-LSAV----------QS----N----S---ELRFL-LLT-------------MPSRSMLVIEDIDCSVKLQNRES 314 (449)
Q Consensus 271 ~~~l~-~s~~----------~~----~----~---~l~~~-~~~-------------~~~~~Il~iDeiD~l~~~~~~~~ 314 (449)
+.+-. ...+ .+ . + .+..+ +.. ..++.||+|||+-.++.
T Consensus 73 v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~------ 146 (519)
T PF03215_consen 73 VQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH------ 146 (519)
T ss_pred eEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc------
Confidence 87642 2221 00 0 0 11111 111 12467999999986653
Q ss_pred hhhhhccchhhHHHHHHHHHHhcCccccCCC-CeEEEEEc-------CCCC--------CCCccccCCCccceEEEeCCC
Q 013128 315 SEVQATNQEENKVTLSGLLNFIDGLWSCCGE-GRIIVFTT-------NHKE--------KLDPALLRPGRMDMHLHMSYC 378 (449)
Q Consensus 315 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~-~~iiI~tT-------N~~~--------~ld~aLlrpgR~d~~i~l~~p 378 (449)
......-..|..++..- .. .+|||.|- |... .+++.++.-.++ .+|.|-+.
T Consensus 147 --------~~~~~f~~~L~~~l~~~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpI 213 (519)
T PF03215_consen 147 --------RDTSRFREALRQYLRSS----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPI 213 (519)
T ss_pred --------hhHHHHHHHHHHHHHcC----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCC
Confidence 11112222233444321 22 56666661 1111 346666654444 56888888
Q ss_pred CHHHHHHHHHHHhCcCCCCCHHHHHHHHHccC-CCHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 013128 379 NTSVFKQLAFNYLGISHHYLFEQIEELIKEVN-VTPAEVAGELMK--STNAEVSLNGLVKFLH 438 (449)
Q Consensus 379 ~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~-~tpa~i~~~l~~--~~~~~~al~~l~~~l~ 438 (449)
.....+..+++.+..+ ......... -.+.++.+.+.. .+|...|+..|+=+..
T Consensus 214 a~T~mkKaL~rI~~~E-------~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 214 APTFMKKALKRILKKE-------ARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred CHHHHHHHHHHHHHHH-------hhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 8877777777665433 111111111 122443344432 3688888887775554
No 184
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.97 E-value=5.3e-09 Score=94.88 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=75.4
Q ss_pred ccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHHH
Q 013128 211 LALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELRF 287 (449)
Q Consensus 211 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~ 287 (449)
|+|.....+++++.+......+ ..|||+|++||||+.+|++|-+.. +.+|+.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-----------~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-----------LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-----------S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-----------CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 4566667777777776665533 589999999999999999999977 46899999998855433334
Q ss_pred HHHcC-----------------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-ccccCC-----
Q 013128 288 LLLTM-----------------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-LWSCCG----- 344 (449)
Q Consensus 288 ~~~~~-----------------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~~~----- 344 (449)
+|-.. ....+||||||+.+.. .....|+++|+. -....+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~------------------~~Q~~Ll~~l~~~~~~~~g~~~~~ 131 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP------------------ELQAKLLRVLEEGKFTRLGSDKPV 131 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H------------------HHHHHHHHHHHHSEEECCTSSSEE
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhHH------------------HHHHHHHHHHhhchhccccccccc
Confidence 44321 2578999999999854 244557777762 111111
Q ss_pred -CCeEEEEEcCC
Q 013128 345 -EGRIIVFTTNH 355 (449)
Q Consensus 345 -~~~iiI~tTN~ 355 (449)
-.+-||+||+.
T Consensus 132 ~~~~RiI~st~~ 143 (168)
T PF00158_consen 132 PVDVRIIASTSK 143 (168)
T ss_dssp E--EEEEEEESS
T ss_pred cccceEEeecCc
Confidence 24567777775
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.97 E-value=6.9e-09 Score=105.50 Aligned_cols=190 Identities=15% Similarity=0.212 Sum_probs=114.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEec
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDL 276 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 276 (449)
..+..|||+++..+.-.. .......+...+. . ..+.++||||.|.|||+|++|++++. +..++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~-A~aa~~~va~~~g------~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRL-AYAAAKAVAENPG------G-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchHH-HHHHHHHHHhccC------C-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 445568999865544332 2222233333221 1 24679999999999999999999998 234555554
Q ss_pred ccccC-------hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEE
Q 013128 277 SAVQS-------NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRII 349 (449)
Q Consensus 277 s~~~~-------~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii 349 (449)
..... +.....+-... +--+++||||+.+.+.. .+..+|...+..+... ++.||
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~----------------~~qeefFh~FN~l~~~--~kqIv 212 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKE----------------RTQEEFFHTFNALLEN--GKQIV 212 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCCh----------------hHHHHHHHHHHHHHhc--CCEEE
Confidence 44321 11122222223 55699999999986511 1223344444443332 23455
Q ss_pred EEEcCCCCC---CCccccCCCcc--ceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHH-HccCCCHHHHHHHH
Q 013128 350 VFTTNHKEK---LDPALLRPGRM--DMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELI-KEVNVTPAEVAGEL 420 (449)
Q Consensus 350 I~tTN~~~~---ld~aLlrpgR~--d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~-~~~~~tpa~i~~~l 420 (449)
+.+...|.. ++|.|.+ || ...+.+..|+.+.+..++.......+..+.+++...+ ....-+..++...|
T Consensus 213 ltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 213 LTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred EEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 544455554 4688888 76 4678889999999999999988777777776655443 33334444444443
No 186
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.96 E-value=2.7e-09 Score=98.87 Aligned_cols=139 Identities=22% Similarity=0.316 Sum_probs=65.8
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-cEE-EEeccccc-----
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-DIY-DLDLSAVQ----- 280 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~~-~l~~s~~~----- 280 (449)
|.+|.|++..|..+.-... | ..++||+||||||||++|+++...|.- ..- .++.+.+.
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 7899999999988754332 2 468999999999999999999998831 000 01111111
Q ss_pred ----------------ChHHHHHHHHc----------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 281 ----------------SNSELRFLLLT----------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 281 ----------------~~~~l~~~~~~----------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
.......++.. .....|||+||+-.+- ..++..|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~------------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD------------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC------------------HHHHHHHHH
Confidence 01111222222 1357899999997652 357777888
Q ss_pred HhcCcc---------ccCCCCeEEEEEcCCC-----------------------CCCCccccCCCccceEEEeCCCCHH
Q 013128 335 FIDGLW---------SCCGEGRIIVFTTNHK-----------------------EKLDPALLRPGRMDMHLHMSYCNTS 381 (449)
Q Consensus 335 ~ldg~~---------~~~~~~~iiI~tTN~~-----------------------~~ld~aLlrpgR~d~~i~l~~p~~~ 381 (449)
.++.-. -.-+-..++|+|+|.= .+|...|+. |||.++.++..+.+
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 775211 0112346788888851 235566667 88888877776554
No 187
>PRK06526 transposase; Provisional
Probab=98.96 E-value=1.4e-09 Score=105.07 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhCceeEEeeeccccccccccccCCCCCcccccCC--HHHHHHHHHHHHHHHcChhHHhhhcCC
Q 013128 164 LNLYLPHVLEKAKAIKEESKVVKLHTVMHMRWDANNIVLKHPMTFKTLALD--SELKREITEDLENFMNGKEYYTRIGRA 241 (449)
Q Consensus 164 ~~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~p~~f~~l~g~--~~~k~~i~~~l~~~~~~~~~~~~~g~~ 241 (449)
...||..+++.....+++++..+.....+.+ .+.+|+++--. +...+..+..+ ..-+|..
T Consensus 35 ~~e~l~~ll~~E~~~R~~~~~~~~lk~a~~p---------~~~~le~fd~~~~~~~~~~~~~~l----~~~~fi~----- 96 (254)
T PRK06526 35 HEEFLAACLQREVAARESHGGEGRIRAARFP---------ARKSLEEFDFDHQRSLKRDTIAHL----GTLDFVT----- 96 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCCChhhccCccCCCcchHHHHHH----hcCchhh-----
Confidence 3567888888887777766544333222222 22333333111 11122222221 1122222
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC-------hHHHHHHHHcCCCCceEEeeccchhh
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS-------NSELRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-------~~~l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
.+.+++|+||||||||+|+.+|+.++ |..++.+....+.. ...+...+.....+.+|+|||++...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 14689999999999999999999987 56666555544321 12233445556678899999999753
No 188
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.96 E-value=1.2e-08 Score=111.39 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=101.7
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEecccccChH
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSAVQSNS 283 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~~ 283 (449)
+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+... .+++.+||..+..+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 5888999888888888877766543 34699999999999999999998764 699999999886432
Q ss_pred HHHHHHH--------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCCC---
Q 013128 284 ELRFLLL--------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCGE--- 345 (449)
Q Consensus 284 ~l~~~~~--------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~~--- 345 (449)
-...+|. .....+.||||||+.+.. .....|+..++.-. ...+.
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~------------------~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP------------------ELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH------------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 2222332 123568999999998853 23344666665321 11111
Q ss_pred ---CeEEEEEcCCCCCCCccccCCCcc---------ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 346 ---GRIIVFTTNHKEKLDPALLRPGRM---------DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 346 ---~~iiI~tTN~~~~ld~aLlrpgR~---------d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
.+-||+||+..- ..+...|+| ...|.+|+... ++...|+..|+.
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 345777777531 122223344 56777877755 456677777765
No 189
>PRK04132 replication factor C small subunit; Provisional
Probab=98.94 E-value=1.3e-08 Score=112.24 Aligned_cols=127 Identities=12% Similarity=0.133 Sum_probs=98.4
Q ss_pred eEEeC--CCCCCHHHHHHHHHHHc-----CCcEEEEecccccChHHHHHHHHcC----C----CCceEEeeccchhhhcc
Q 013128 246 YLLYG--PPGTGKSSLIAAMANQL-----KFDIYDLDLSAVQSNSELRFLLLTM----P----SRSMLVIEDIDCSVKLQ 310 (449)
Q Consensus 246 ~LL~G--PpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~~~~~l~~~~~~~----~----~~~Il~iDeiD~l~~~~ 310 (449)
.+..| |++.||||+|.|+|+++ +.+++.+|.++..+...++..+... + +.-|++|||+|.+..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 45568 99999999999999998 5689999999876666666554321 1 236999999999842
Q ss_pred cccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHH
Q 013128 311 NRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~ 390 (449)
...+.|+..|+.. +..+.+|++||+++.+.+++++ |+ ..+.|+.|+.++....+...
T Consensus 645 ----------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 645 ----------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ----------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 2346688888753 3457899999999999999998 87 67999999998888888776
Q ss_pred hCcCCCC
Q 013128 391 LGISHHY 397 (449)
Q Consensus 391 l~~~~~~ 397 (449)
...++..
T Consensus 702 ~~~Egi~ 708 (846)
T PRK04132 702 AENEGLE 708 (846)
T ss_pred HHhcCCC
Confidence 6554433
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.5e-09 Score=105.11 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=95.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE-eccccc------ChHHHHHHHHcCC--CCceEEeeccchhhhccccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL-DLSAVQ------SNSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRE 313 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l-~~s~~~------~~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~ 313 (449)
-.++||+||||+|||.||..+|...+++|+.+ +..++. .-..+...|..+. .-+||++|||+.++.--
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--- 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--- 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---
Confidence 35699999999999999999999999999965 333332 2245666777664 46899999999987411
Q ss_pred chhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCC-ccccCCCccceEEEeCCCCH-HHHHHHHHH
Q 013128 314 SSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLD-PALLRPGRMDMHLHMSYCNT-SVFKQLAFN 389 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld-~aLlrpgR~d~~i~l~~p~~-~~r~~l~~~ 389 (449)
...+..+..++..|+-.+...-. .|...+|++||...+-|. -.++. +|+..+++|..+. ++...++..
T Consensus 615 -----pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 -----PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -----ccCchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 11345667788888888876432 233445556776655442 34556 8999999999877 555555553
No 191
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.92 E-value=3.4e-08 Score=98.32 Aligned_cols=64 Identities=25% Similarity=0.400 Sum_probs=44.0
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC--CcEEEEecccc
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK--FDIYDLDLSAV 279 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~ 279 (449)
.+.++|+.+.++..--.++ .++. |+-.++++||.||||||||.||-+||++|| .||..++.+++
T Consensus 23 ~~GlVGQ~~AReAagiiv~-mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVD-MIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHH-HHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHH-HHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 4789999999887654443 2322 223368999999999999999999999996 66666665555
No 192
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.7e-09 Score=100.99 Aligned_cols=95 Identities=25% Similarity=0.348 Sum_probs=68.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--------hHHHHHHHHcC------CCCceEEeeccchhhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS--------NSELRFLLLTM------PSRSMLVIEDIDCSVK 308 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--------~~~l~~~~~~~------~~~~Il~iDeiD~l~~ 308 (449)
+.++||.||.|||||.||+.+|..++.+|-.-|++.+.. +.-+.+++... .+++||+|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 457999999999999999999999999999999888853 23445566554 3689999999999976
Q ss_pred cccccchhhhhccchhhHHHHHHHHHHhcCccc
Q 013128 309 LQNRESSEVQATNQEENKVTLSGLLNFIDGLWS 341 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 341 (449)
.....+-.. +-...-+...||..|+|.-.
T Consensus 177 kSeN~SITR----DVSGEGVQQALLKiiEGTva 205 (408)
T COG1219 177 KSENPSITR----DVSGEGVQQALLKIIEGTVA 205 (408)
T ss_pred cCCCCCccc----ccCchHHHHHHHHHHcCcee
Confidence 433221111 11122345668888887643
No 193
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=4.9e-09 Score=102.44 Aligned_cols=134 Identities=25% Similarity=0.407 Sum_probs=80.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc---EEEEecccccChHHHHHHHHcC-------------CCCceEEeeccchh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD---IYDLDLSAVQSNSELRFLLLTM-------------PSRSMLVIEDIDCS 306 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~~~~~l~~~~~~~-------------~~~~Il~iDeiD~l 306 (449)
++.+||.||+|||||++++.+-..+.-+ ...++++...+...+...+... .++.|+||||+...
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4689999999999999999988777533 3456666655544454433221 24679999999875
Q ss_pred hhcccccchhhhhccchhhHHHHHHHH-HHhc--CccccCC------CCeEEEEEcCCCC---CCCccccCCCccceEEE
Q 013128 307 VKLQNRESSEVQATNQEENKVTLSGLL-NFID--GLWSCCG------EGRIIVFTTNHKE---KLDPALLRPGRMDMHLH 374 (449)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~LL-~~ld--g~~~~~~------~~~iiI~tTN~~~---~ld~aLlrpgR~d~~i~ 374 (449)
.. +. ..... ..+|| +.|| |.+.... ..+.+|+++|... .+++.|+| .| ..+.
T Consensus 113 ~~--d~----------ygtq~-~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 113 QP--DK----------YGTQP-PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp -----T----------TS--H-HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred CC--CC----------CCCcC-HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 43 11 11112 22344 3343 3333211 3467788887642 47888888 77 5689
Q ss_pred eCCCCHHHHHHHHHHHhC
Q 013128 375 MSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 375 l~~p~~~~r~~l~~~~l~ 392 (449)
+++|+.++...|+..++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999988888777665
No 194
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.90 E-value=1e-08 Score=110.52 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=90.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC--cEEEEeccccc----ChHHHHHHHH-----------cCCCCceEEeeccchh
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF--DIYDLDLSAVQ----SNSELRFLLL-----------TMPSRSMLVIEDIDCS 306 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~~~----~~~~l~~~~~-----------~~~~~~Il~iDeiD~l 306 (449)
.++||.|+||||||++++++++.+.. +++.++++... ....+...+. .....++|+||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999999864 47777653211 1111111111 1134579999999988
Q ss_pred hhcccccchhhhhccchhhHHHHHHHHHHhcCc---------cccCCCCeEEEEEcCCCC---CCCccccCCCccceEEE
Q 013128 307 VKLQNRESSEVQATNQEENKVTLSGLLNFIDGL---------WSCCGEGRIIVFTTNHKE---KLDPALLRPGRMDMHLH 374 (449)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~---~ld~aLlrpgR~d~~i~ 374 (449)
.. .+.+.|++.|+.- .......+.||+|+|..+ .+.++|+. ||++++.
T Consensus 97 ~~------------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 97 DD------------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred CH------------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 53 4566788888621 111223467888999875 78999999 9999999
Q ss_pred eCCC-CHHHHHHHHHHHh
Q 013128 375 MSYC-NTSVFKQLAFNYL 391 (449)
Q Consensus 375 l~~p-~~~~r~~l~~~~l 391 (449)
+.++ ..++|.+|+++++
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 9775 5566899998876
No 195
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.86 E-value=4.5e-08 Score=103.88 Aligned_cols=156 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHH-----------cCCcEEEE
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ-----------LKFDIYDL 274 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~-----------l~~~~~~l 274 (449)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|-+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999998888888887766543 357999999999999999999887 36799999
Q ss_pred ecccccChHHHH-HHHH------------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHH
Q 013128 275 DLSAVQSNSELR-FLLL------------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNF 335 (449)
Q Consensus 275 ~~s~~~~~~~l~-~~~~------------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 335 (449)
||+.+..+ .+. .+|. +....+.||||||+.+.. .....|+..
T Consensus 285 nCaal~e~-lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~------------------~~Q~kLl~~ 345 (538)
T PRK15424 285 NCGAIAES-LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL------------------PLQTRLLRV 345 (538)
T ss_pred ecccCChh-hHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH------------------HHHHHHHhh
Confidence 99988542 222 1221 123567999999999853 233456777
Q ss_pred hcCcc-ccCC------CCeEEEEEcCCC-CC------CCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhCc
Q 013128 336 IDGLW-SCCG------EGRIIVFTTNHK-EK------LDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLGI 393 (449)
Q Consensus 336 ldg~~-~~~~------~~~iiI~tTN~~-~~------ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~~ 393 (449)
++.-. ...| -.+-||++||.. +. +.+.|.- |+ ...|++|+... ++...|+..|+..
T Consensus 346 L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 346 LEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred hhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 65311 1111 123567776653 21 2222322 33 25677777654 5677777777754
No 196
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.86 E-value=1.2e-07 Score=93.33 Aligned_cols=64 Identities=27% Similarity=0.410 Sum_probs=46.8
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC--CcEEEEecccc
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK--FDIYDLDLSAV 279 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~ 279 (449)
=+-++|+.+.++..-=.++ .++ -|+-.++|+|+.||||||||.||-+||.+|| .||..++.+.+
T Consensus 38 ~dG~VGQ~~AReAaGvIv~-mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVK-MIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CCcccchHHHHHhhhHHHH-HHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 3678898888776432222 121 2444578999999999999999999999996 56666666665
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.2e-07 Score=94.30 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=91.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC-----------------------CcEEEEeccc---ccChHHHHHHHHc---CC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK-----------------------FDIYDLDLSA---VQSNSELRFLLLT---MP 293 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~-----------------------~~~~~l~~s~---~~~~~~l~~~~~~---~~ 293 (449)
+.++||+||.|+||+++|.++|..+- .+++.+.... .-....++.+... .+
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 56899999999999999999999872 2566665432 1223444443222 22
Q ss_pred ---CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccc
Q 013128 294 ---SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370 (449)
Q Consensus 294 ---~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d 370 (449)
..-|++||++|.+.. ..-+.||..++.- +.+.++|++|+.++.|-|.+++ |+
T Consensus 105 ~~~~~kV~iI~~ae~m~~------------------~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S--RC- 159 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNE------------------SASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS--RC- 159 (319)
T ss_pred ccCCceEEEecchhhhCH------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cc-
Confidence 356999999998843 3557799999873 5678999999999999999998 87
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 013128 371 MHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 371 ~~i~l~~p~~~~r~~l~~~ 389 (449)
..+.|+.|+.++..+.+..
T Consensus 160 q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eeEeCCCCCHHHHHHHHHH
Confidence 5799999999887776654
No 198
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.84 E-value=1.2e-07 Score=101.13 Aligned_cols=177 Identities=15% Similarity=0.174 Sum_probs=108.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
...+|++++|.....+.+++.+...... ...+||+|++||||+++|+++-... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457999999888878888877655442 3569999999999999999987665 3689999999876
Q ss_pred ChHHHHHHHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-cccc
Q 013128 281 SNSELRFLLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-LWSC 342 (449)
Q Consensus 281 ~~~~l~~~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~ 342 (449)
...--..+|. .....+.|||||||.+.. .....|++++.. ....
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~------------------~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP------------------RMQAKLLRFLNDGTFRR 329 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH------------------HHHHHHHHHHhcCCccc
Confidence 4211112221 123467899999999853 122446666642 2211
Q ss_pred CC------CCeEEEEEcCCC-C------CCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhCcC-------CCCCH
Q 013128 343 CG------EGRIIVFTTNHK-E------KLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLGIS-------HHYLF 399 (449)
Q Consensus 343 ~~------~~~iiI~tTN~~-~------~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~~~-------~~~l~ 399 (449)
.| ..+-||+||+.. . .+.+.|.. |+ ...|++|++.. ++...|+..|+... ...+.
T Consensus 330 ~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 330 VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 11 124566666553 2 23445555 54 35677777755 45666666665421 12345
Q ss_pred HHHHHHHHccCC
Q 013128 400 EQIEELIKEVNV 411 (449)
Q Consensus 400 ~~i~~l~~~~~~ 411 (449)
++..+.+....|
T Consensus 408 ~~a~~~L~~y~W 419 (520)
T PRK10820 408 ADLNTVLTRYGW 419 (520)
T ss_pred HHHHHHHhcCCC
Confidence 555555544443
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.8e-07 Score=93.36 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=91.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC------------------------CcEEEEecc--cccChHHHHHHHHcC----
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK------------------------FDIYDLDLS--AVQSNSELRFLLLTM---- 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s--~~~~~~~l~~~~~~~---- 292 (449)
+.++||+||+|+||+++|.++|..+- .+++.+... .--.-..++.+....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 56899999999999999999999982 235545431 111234455443332
Q ss_pred --CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccc
Q 013128 293 --PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370 (449)
Q Consensus 293 --~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d 370 (449)
...-|++||++|.+.. ...+.||..++.- +..+++|++|++++.|.|.+++ |+
T Consensus 104 ~~g~~KV~iI~~a~~m~~------------------~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S--RC- 158 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE------------------AAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS--RC- 158 (325)
T ss_pred ccCCceEEEEechhhhCH------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--hc-
Confidence 2346999999998843 3557799999863 5678999999999999999998 87
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q 013128 371 MHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 371 ~~i~l~~p~~~~r~~l~~~~ 390 (449)
..+.|+.|+.++..+.+...
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHH
Confidence 56899999998877766653
No 200
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.83 E-value=5.5e-08 Score=103.20 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
...+|++++|.....+.+.+.+..+... ...+||.|++||||+++|++|.+.. +.+++.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467999999998888888888766553 3579999999999999999999875 5799999999885
Q ss_pred ChHHHHH-HHH------------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-
Q 013128 281 SNSELRF-LLL------------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW- 340 (449)
Q Consensus 281 ~~~~l~~-~~~------------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~- 340 (449)
.. .+.. +|. +....+.||||||+.+.. .....|+..++.-.
T Consensus 276 e~-lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~------------------~~Q~~Ll~~L~~~~~ 336 (526)
T TIGR02329 276 ES-LLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL------------------PLQTRLLRVLEEREV 336 (526)
T ss_pred hh-HHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH------------------HHHHHHHHHHhcCcE
Confidence 42 2221 221 123467899999999853 23344666664211
Q ss_pred ccCC------CCeEEEEEcCCC-C-CC-----CccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhCc
Q 013128 341 SCCG------EGRIIVFTTNHK-E-KL-----DPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLGI 393 (449)
Q Consensus 341 ~~~~------~~~iiI~tTN~~-~-~l-----d~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~~ 393 (449)
...| -.+-+|++||.. . .+ .+.|.. |+ ...|++|+... ++...|+..|+..
T Consensus 337 ~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 337 VRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred EecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 1111 123466666553 2 12 223333 44 36788888765 5677777777754
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=8.9e-08 Score=96.24 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=91.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC------------------------CcEEEEeccc---ccChHHHHHHHHcC---
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK------------------------FDIYDLDLSA---VQSNSELRFLLLTM--- 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s~---~~~~~~l~~~~~~~--- 292 (449)
+.++||+||+|+||+++|.++|..+- .+++.+.... .-.-..++.+....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 56899999999999999999999982 2455554321 12234444443332
Q ss_pred C---CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013128 293 P---SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRM 369 (449)
Q Consensus 293 ~---~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~ 369 (449)
+ ..-|++||++|.+.. ..-+.||..|+.- +...++|.+|++++.|.|.+++ |+
T Consensus 104 ~~~g~~kV~iI~~ae~m~~------------------~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTD------------------AAANALLKTLEEP----PENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred cccCCceEEEEcchHhhCH------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cc
Confidence 2 456999999999843 3557799999873 5678999999999999999998 87
Q ss_pred ceEEEeCCCCHHHHHHHHHH
Q 013128 370 DMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 370 d~~i~l~~p~~~~r~~l~~~ 389 (449)
. .+.|+.|+.++..+.+..
T Consensus 160 q-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred c-cccCCCCCHHHHHHHHHH
Confidence 5 589999998887776654
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.82 E-value=1.9e-08 Score=97.37 Aligned_cols=95 Identities=23% Similarity=0.459 Sum_probs=65.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
....+.++-+.+...+.....+..+.. +|. .+.+++||||||||||+|+.|||+++ |..++.+...++.
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~ 145 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL 145 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 334455566666666666655555443 222 26799999999999999999999998 6778888777663
Q ss_pred Ch-------HHHH-HHHHcCCCCceEEeeccchh
Q 013128 281 SN-------SELR-FLLLTMPSRSMLVIEDIDCS 306 (449)
Q Consensus 281 ~~-------~~l~-~~~~~~~~~~Il~iDeiD~l 306 (449)
.+ .... .+.....+.-+|+|||+...
T Consensus 146 ~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 146 SKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 22 1222 23333678899999999875
No 203
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=4.8e-08 Score=99.15 Aligned_cols=203 Identities=13% Similarity=0.078 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCceeEEeeeccccccc-------cc--cccCCCCCcccccCCHHHHHHHHHHHHHHHcC
Q 013128 161 DVVLNLYLPHVLEKAKAIKEESKVVKLHTVMHMRWDA-------NN--IVLKHPMTFKTLALDSELKREITEDLENFMNG 231 (449)
Q Consensus 161 ~~v~~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~w~~-------~~--~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~ 231 (449)
...++.++..+...++..+...+++.....+...-.. .+ -.......+++|+|....-+++++.+..+-
T Consensus 21 r~~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LIG~~~~~~~~~eqik~~a-- 98 (403)
T COG1221 21 RANVSHELNGLGREGDLAKINGRPVIFLPSEAFSMSELTELQALLPQARPYLKSEALDDLIGESPSLQELREQIKAYA-- 98 (403)
T ss_pred HHHhHHHHHhhhhhhhHHHhcCCCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhhhhccCHHHHHHHHHHHhhC--
Confidence 3566788888888888888888877332221111000 00 011233468999999998888888887622
Q ss_pred hhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEecccccChHHHHHHHHc----------------
Q 013128 232 KEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSAVQSNSELRFLLLT---------------- 291 (449)
Q Consensus 232 ~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~~~~~l~~~~~~---------------- 291 (449)
+....+|++|++||||+.+|++|.... +.+++.+||..+..+.....+|--
T Consensus 99 ---------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glf 169 (403)
T COG1221 99 ---------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLF 169 (403)
T ss_pred ---------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchh
Confidence 124579999999999999999998544 568999999999877665554431
Q ss_pred -CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-cccc------CCCCeEEEEEcCC-C-CCCCc
Q 013128 292 -MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-LWSC------CGEGRIIVFTTNH-K-EKLDP 361 (449)
Q Consensus 292 -~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~------~~~~~iiI~tTN~-~-~~ld~ 361 (449)
....++||+|||..+.. .....|+.+||. .+.. ....+-+|++||. + +.+-.
T Consensus 170 e~A~GGtLfLDEI~~LP~------------------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 170 EQANGGTLFLDEIHRLPP------------------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred eecCCCEEehhhhhhCCH------------------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh
Confidence 12568999999998854 122337777873 2221 1234566666654 2 22222
Q ss_pred --cccCCCccceEEEeCCCCH--HHHHHHHHHHhCc
Q 013128 362 --ALLRPGRMDMHLHMSYCNT--SVFKQLAFNYLGI 393 (449)
Q Consensus 362 --aLlrpgR~d~~i~l~~p~~--~~r~~l~~~~l~~ 393 (449)
.|.+ -|+.+.|++|+..+ +++..|+..|+..
T Consensus 232 g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 232 GADLTR-RLNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred hcchhh-hhcCceecCCChhhchhhHHHHHHHHHHH
Confidence 3332 16778888888765 6677788888764
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=98.79 E-value=1.5e-08 Score=98.45 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=46.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh-------HHHHHHHHc-CCCCceEEeeccchh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN-------SELRFLLLT-MPSRSMLVIEDIDCS 306 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~-------~~l~~~~~~-~~~~~Il~iDeiD~l 306 (449)
..+++|+||||||||+|+.++|+.+ |..+..++..++... ..+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4579999999999999999998775 677777765544311 123334433 457789999999864
No 205
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.8e-07 Score=91.83 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=87.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC---------------------CcEEEEe--cccc-------cChHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK---------------------FDIYDLD--LSAV-------QSNSELRFLLLTM 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~---------------------~~~~~l~--~s~~-------~~~~~l~~~~~~~ 292 (449)
+.++||+||+|+||+++|.++|+.+- .|++.+. ...- -.-..++.+....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 56899999999999999999998872 2345442 2111 0123344433322
Q ss_pred ---C---CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCC
Q 013128 293 ---P---SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRP 366 (449)
Q Consensus 293 ---~---~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrp 366 (449)
+ ..-|++||++|.+.. ...+.||..|+.- +...++|.+|+.++.|-|.+++
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~------------------~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrS- 162 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR------------------AACNALLKTLEEP----SPGRYLWLISAQPARLPATIRS- 162 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH------------------HHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHh-
Confidence 2 346999999998842 3557799998863 4567899999999999999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHH
Q 013128 367 GRMDMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 367 gR~d~~i~l~~p~~~~r~~l~~~ 389 (449)
|+ ..+.|+.|+.++-.+.+..
T Consensus 163 -RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 -RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred -hh-eEeeCCCcCHHHHHHHHHH
Confidence 87 5689999998877666654
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.77 E-value=4.4e-09 Score=96.37 Aligned_cols=64 Identities=30% Similarity=0.565 Sum_probs=46.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc-------ChHHHHHHHHcCCCCceEEeeccchh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ-------SNSELRFLLLTMPSRSMLVIEDIDCS 306 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~-------~~~~l~~~~~~~~~~~Il~iDeiD~l 306 (449)
+.|++|+||||||||+||.|||+++ |+.+..++..++. ........+.......+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 5789999999999999999999987 7888888766652 12223344555567889999999753
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.76 E-value=3.5e-08 Score=98.80 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=66.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh---------HHHHHHHHcCCCCceEEeeccchhhhccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN---------SELRFLLLTMPSRSMLVIEDIDCSVKLQN 311 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~---------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~ 311 (449)
.+++||||||||||+|+.|||+++ +..++.++...+... ......+......-+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~--- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI--- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC---
Confidence 689999999999999999999998 778888876655321 11122245556778999999986532
Q ss_pred ccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC-CC----CCccccC
Q 013128 312 RESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK-EK----LDPALLR 365 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-~~----ld~aLlr 365 (449)
.....+.|.+.++.... .+.-+|+|||.+ +. +++++..
T Consensus 261 -------------t~~~~~~Lf~iin~R~~---~~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 261 -------------TEFSKSELFNLINKRLL---RQKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred -------------CHHHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 11223445555554332 123577788864 22 4555555
No 208
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.76 E-value=1.4e-07 Score=104.07 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=101.0
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS 281 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 281 (449)
..+|++++|.....+.+.+.+...... ...+||.|++|||||++|++|.... +.+++.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 357889999999999998888776542 3579999999999999999999876 57999999988743
Q ss_pred hHHHHHH-----------------HHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccC
Q 013128 282 NSELRFL-----------------LLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCC 343 (449)
Q Consensus 282 ~~~l~~~-----------------~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~ 343 (449)
..--..+ ......+++||||||+.+.. .....|++.++.-. ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~------------------~~Q~~L~~~l~~~~~~~~ 502 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL------------------ELQPKLLRVLQEQEFERL 502 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH------------------HHHHHHHHHHHhCCEEeC
Confidence 2100011 11234578999999998743 23345666665321 110
Q ss_pred C------CCeEEEEEcCCC-C------CCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 344 G------EGRIIVFTTNHK-E------KLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 344 ~------~~~iiI~tTN~~-~------~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
+ ..+-+|+||+.. + .+.+.|.. |+ ...|++|+... ++...|+..|+.
T Consensus 503 g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~ 565 (686)
T PRK15429 503 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTF 565 (686)
T ss_pred CCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHH
Confidence 1 234577777653 1 12222332 33 24577777654 456667777764
No 209
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.75 E-value=2.2e-07 Score=98.81 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=101.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChH
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNS 283 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 283 (449)
.+++++|.....+.+.+.+...... ...+||+|++||||+++|++|.... +.+++.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~- 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES- 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-
Confidence 5788999999888898888765543 3589999999999999999999886 478999999988542
Q ss_pred HHH-HHHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC
Q 013128 284 ELR-FLLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG 344 (449)
Q Consensus 284 ~l~-~~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~ 344 (449)
.+. .+|. .....+.|||||||.+.. .....|++.++.-. ...+
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~------------------~~Q~~Ll~~l~~~~~~~~g 314 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL------------------ALQAKLLRVLQYGEIQRVG 314 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH------------------HHHHHHHHHHhcCCEeeCC
Confidence 111 1211 223567899999999853 23344666664321 1101
Q ss_pred ------CCeEEEEEcCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHHhC
Q 013128 345 ------EGRIIVFTTNHK-------EKLDPALLRPGRMD-MHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 345 ------~~~iiI~tTN~~-------~~ld~aLlrpgR~d-~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
..+-||+|||.. ..+.+.|.. |+. ..|++|+... ++...|+..|+.
T Consensus 315 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 315 SDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred CCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 134567777653 224444444 443 4577887754 456666666664
No 210
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.1e-08 Score=99.35 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=85.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--------hHHHHHHHHcCC------CCceEEeeccchhhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS--------NSELRFLLLTMP------SRSMLVIEDIDCSVK 308 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--------~~~l~~~~~~~~------~~~Il~iDeiD~l~~ 308 (449)
+.++||.||+|+|||.|++.+|.-++.+|...||+.+.. ++-+..++..+. +..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 568999999999999999999999999999999999854 344566666653 689999999999874
Q ss_pred cccccchhhhhccchhhHHHHHHHHHHhcCccccC---------CCCeEEEEEc-------CCCCCCCccccCCCcc-ce
Q 013128 309 LQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC---------GEGRIIVFTT-------NHKEKLDPALLRPGRM-DM 371 (449)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~---------~~~~iiI~tT-------N~~~~ld~aLlrpgR~-d~ 371 (449)
....-.... +-...-+...||..++|.--.. .+..+.|=|| .---.||.-+.| |+ +.
T Consensus 306 ~~~~i~~~R----DVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~ 379 (564)
T KOG0745|consen 306 KAESIHTSR----DVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDK 379 (564)
T ss_pred cCccccccc----cccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcch
Confidence 222111110 0112335566888888653221 1223333333 334556666666 55 34
Q ss_pred EEEeCCC
Q 013128 372 HLHMSYC 378 (449)
Q Consensus 372 ~i~l~~p 378 (449)
.+-|+.|
T Consensus 380 slGFg~~ 386 (564)
T KOG0745|consen 380 SLGFGAP 386 (564)
T ss_pred hcccCCC
Confidence 5556666
No 211
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=5.6e-08 Score=97.32 Aligned_cols=121 Identities=13% Similarity=0.176 Sum_probs=86.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC-------------------------CcEEEEecccc----------cChHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK-------------------------FDIYDLDLSAV----------QSNSELRF 287 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~-------------------------~~~~~l~~s~~----------~~~~~l~~ 287 (449)
+.++||+||+|+|||++|+++|+.+. .+++.++...- -.-..++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 56899999999999999999999972 35666765321 12334444
Q ss_pred HHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCc
Q 013128 288 LLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDP 361 (449)
Q Consensus 288 ~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~ 361 (449)
+.... ...-|++||+++.+-. ...+.|+..++... .+..+|++|++++.+.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNL------------------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLP 158 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCH------------------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChH
Confidence 43332 2456899999998742 23455777777642 34678889999999999
Q ss_pred cccCCCccceEEEeCCCCHHHHHHHHH
Q 013128 362 ALLRPGRMDMHLHMSYCNTSVFKQLAF 388 (449)
Q Consensus 362 aLlrpgR~d~~i~l~~p~~~~r~~l~~ 388 (449)
.+.+ |+ ..+.|+.|+.++..+.+.
T Consensus 159 ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 159 TIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 9988 76 568899999888766554
No 212
>PRK06921 hypothetical protein; Provisional
Probab=98.74 E-value=4.3e-08 Score=95.53 Aligned_cols=63 Identities=29% Similarity=0.376 Sum_probs=46.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEecccccCh-----HHHHHHHHcCCCCceEEeeccch
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSAVQSN-----SELRFLLLTMPSRSMLVIEDIDC 305 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~~~-----~~l~~~~~~~~~~~Il~iDeiD~ 305 (449)
..+++|+||||||||+|+.|||+++ +..++.+...++... ..+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999987 566777765443211 11223344556788999999954
No 213
>PF13173 AAA_14: AAA domain
Probab=98.73 E-value=5e-08 Score=84.34 Aligned_cols=63 Identities=24% Similarity=0.486 Sum_probs=48.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC--CcEEEEecccccChH----HHHHHHHcC--CCCceEEeeccchh
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK--FDIYDLDLSAVQSNS----ELRFLLLTM--PSRSMLVIEDIDCS 306 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~~~~~----~l~~~~~~~--~~~~Il~iDeiD~l 306 (449)
+.++|+||+|||||++++.+++.+. .+++.+++.+..... .+...+.+. ..+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999999887 888888887764321 122333333 36799999999986
No 214
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.71 E-value=3.2e-08 Score=86.69 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC---cEEEEecccccChHHHHHHH
Q 013128 213 LDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF---DIYDLDLSAVQSNSELRFLL 289 (449)
Q Consensus 213 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~~l~~s~~~~~~~l~~~~ 289 (449)
|.....+++.+.+...... ...+||+|+|||||+++|++|....+. +++.++|.... ..++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 3445556677777666543 357999999999999999999998864 45555666543 2334
Q ss_pred HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCC------CCccc
Q 013128 290 LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEK------LDPAL 363 (449)
Q Consensus 290 ~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~------ld~aL 363 (449)
... .+..|+|+|||.+.. .....|++.++... ...-++|..++..++. +++.|
T Consensus 66 ~~a-~~gtL~l~~i~~L~~------------------~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRLSP------------------EAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp HHC-TTSEEEEECGCCS-H------------------HHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred HHc-CCCEEEECChHHCCH------------------HHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHH
Confidence 443 888999999999853 22333555554321 1233555555555544 44555
Q ss_pred cCCCccc-eEEEeCC
Q 013128 364 LRPGRMD-MHLHMSY 377 (449)
Q Consensus 364 lrpgR~d-~~i~l~~ 377 (449)
.. |+. ..|++|+
T Consensus 125 ~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 125 YY--RLSQLEIHLPP 137 (138)
T ss_dssp HH--HCSTCEEEE--
T ss_pred HH--HhCCCEEeCCC
Confidence 54 443 5666664
No 215
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.65 E-value=1.3e-07 Score=99.76 Aligned_cols=143 Identities=18% Similarity=0.214 Sum_probs=87.9
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc--EEEEecccccC-
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD--IYDLDLSAVQS- 281 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~s~~~~- 281 (449)
+..|+++.|....++.+.-.+ .....++|.||||||||+++++++..+... -..++.+.+.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 347899999887766543221 123579999999999999999999865210 00111111100
Q ss_pred -----------------------hHH-------HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 282 -----------------------NSE-------LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 282 -----------------------~~~-------l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
... .+.-.......++|||||++.+.. ..+..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~------------------~~~~~ 314 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR------------------SVLDA 314 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH------------------HHHHH
Confidence 000 000012234568999999997632 34455
Q ss_pred HHHHhcCcc---------ccCCCCeEEEEEcCCC------C-----------------CCCccccCCCccceEEEeCCCC
Q 013128 332 LLNFIDGLW---------SCCGEGRIIVFTTNHK------E-----------------KLDPALLRPGRMDMHLHMSYCN 379 (449)
Q Consensus 332 LL~~ldg~~---------~~~~~~~iiI~tTN~~------~-----------------~ld~aLlrpgR~d~~i~l~~p~ 379 (449)
|++.|+.-. ..-...+.+|+++|.- + +|...|+. |||.++.++.++
T Consensus 315 L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~ 392 (499)
T TIGR00368 315 LREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLP 392 (499)
T ss_pred HHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCC
Confidence 666664211 0112356788888852 1 57888999 999999999987
Q ss_pred HHH
Q 013128 380 TSV 382 (449)
Q Consensus 380 ~~~ 382 (449)
.++
T Consensus 393 ~~~ 395 (499)
T TIGR00368 393 PEK 395 (499)
T ss_pred HHH
Confidence 654
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.9e-07 Score=89.94 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=50.2
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhh-cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRI-GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
-++|.++.|+.+-=.|..-.++...-..+ .---|+++|..||.|+|||-+|+-+|+..+.||+.+..+.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 36788888888765555443332111111 11236899999999999999999999999999998876554
No 217
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.62 E-value=1.4e-07 Score=91.60 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=104.2
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc--
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD-- 270 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-- 270 (449)
.+|.. .++|..++++++.++....+.+ |... +.-.+.|+|||||||||+.+.+.|..+-.+
T Consensus 29 ~pwve----kyrP~~l~dv~~~~ei~st~~~----~~~~---------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 29 QPWVE----KYRPPFLGIVIKQEPIWSTENR----YSGM---------PGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred CCCcc----CCCCchhhhHhcCCchhhHHHH----hccC---------CCCCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 46865 8899999999998766554433 3221 112389999999999999999999998432
Q ss_pred ----EEEEecccccCh---HHHHHHHHcCC---------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 271 ----IYDLDLSAVQSN---SELRFLLLTMP---------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 271 ----~~~l~~s~~~~~---~~l~~~~~~~~---------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
+..++.++-..- ..-...|+.+. ..-.+++||.|++.. ...+.|-.
T Consensus 92 ~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------------~AQnALRR 153 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------------DAQNALRR 153 (360)
T ss_pred chhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH------------------HHHHHHHH
Confidence 223444433221 11112333332 567899999999753 12222334
Q ss_pred HhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 335 FIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 335 ~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
.+... ..+.-++.-+|++..+.|++.. |+.. +.+...+..+-.....+....+....
T Consensus 154 viek~----t~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~ 210 (360)
T KOG0990|consen 154 VIEKY----TANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKET 210 (360)
T ss_pred HHHHh----ccceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhc
Confidence 44433 2334556788999999999998 7743 56666776666666676666554333
No 218
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.62 E-value=6.1e-08 Score=81.22 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=40.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhh
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
|.||||||+|||++++.+|..+...+-.-....+-....-...+.......++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 57999999999999999998885333111111211111122345566678899999998754
No 219
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.61 E-value=1.9e-06 Score=83.63 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-cEEEEe--ccccc----------
Q 013128 214 DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-DIYDLD--LSAVQ---------- 280 (449)
Q Consensus 214 ~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~~~l~--~s~~~---------- 280 (449)
.....+++...+...+... +..++|+||+|+|||++++.+++.+.. .+.... .....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~----------~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~ 93 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQR----------EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAA 93 (269)
T ss_pred CCHHHHHHHHHHHHHHhcC----------CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHH
Confidence 3344455666555444311 234889999999999999999999863 222111 01110
Q ss_pred -------C--h----HHHHHHH---HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC
Q 013128 281 -------S--N----SELRFLL---LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG 344 (449)
Q Consensus 281 -------~--~----~~l~~~~---~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 344 (449)
. . ..+...+ .....+.+|+|||++.+.. .....+..|.+.... .+
T Consensus 94 ~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~l~~~~~~----~~ 154 (269)
T TIGR03015 94 DFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTP---------------ELLEELRMLSNFQTD----NA 154 (269)
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCH---------------HHHHHHHHHhCcccC----CC
Confidence 0 0 0111111 1234678999999998632 011122223332211 11
Q ss_pred CCeEEEEEcCC--CCCCC----ccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC----CCC-HHHHHHHHHccCCCH
Q 013128 345 EGRIIVFTTNH--KEKLD----PALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH----HYL-FEQIEELIKEVNVTP 413 (449)
Q Consensus 345 ~~~iiI~tTN~--~~~ld----~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~----~~l-~~~i~~l~~~~~~tp 413 (449)
..+.||++... .+.+. ..+.+ |+...++++..+.++...++...+...+ ..+ .+.++.+.+..+=.|
T Consensus 155 ~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p 232 (269)
T TIGR03015 155 KLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP 232 (269)
T ss_pred CeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc
Confidence 22233333321 11221 23445 7888999999999999999888775321 223 344555555555445
Q ss_pred HHHHHHH
Q 013128 414 AEVAGEL 420 (449)
Q Consensus 414 a~i~~~l 420 (449)
..|...+
T Consensus 233 ~~i~~l~ 239 (269)
T TIGR03015 233 RLINILC 239 (269)
T ss_pred cHHHHHH
Confidence 5554433
No 220
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.60 E-value=6.3e-07 Score=84.32 Aligned_cols=156 Identities=24% Similarity=0.303 Sum_probs=81.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc---EEEEecccccCh-------------------------------------
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD---IYDLDLSAVQSN------------------------------------- 282 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~~~------------------------------------- 282 (449)
...++|+||+|+|||+|++.+.+.+.-. .+.++.......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4679999999999999999999999421 111111110000
Q ss_pred -------HHHHHHHHcCCCCceEEeeccchhh-hcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 283 -------SELRFLLLTMPSRSMLVIEDIDCSV-KLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 283 -------~~l~~~~~~~~~~~Il~iDeiD~l~-~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
..+...+.....+.||+|||++.+. .. ......+..|.+.++.... ...+.+|+++.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~--~~~~~~v~~~S 164 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS-------------EEDKDFLKSLRSLLDSLLS--QQNVSIVITGS 164 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT-------------TTTHHHHHHHHHHHHH------TTEEEEEEES
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc-------------cchHHHHHHHHHHHhhccc--cCCceEEEECC
Confidence 1111222222345999999999986 21 1123345556666665333 23344444333
Q ss_pred CC----C--CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCC---CHHHHHHHHHccCCCHHHHH
Q 013128 355 HK----E--KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHY---LFEQIEELIKEVNVTPAEVA 417 (449)
Q Consensus 355 ~~----~--~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~---l~~~i~~l~~~~~~tpa~i~ 417 (449)
.. + .-...+.. |+.. +.+++.+.++.++++...+... .. -.++++.+..-.+=.|.-|.
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 165 SDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp SHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 21 1 12233444 7877 9999999999999999865443 32 24455666555555665554
No 221
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.58 E-value=1.8e-07 Score=98.33 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=77.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcE--EEEecccccC---------------------hHHHHHH----------H
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDI--YDLDLSAVQS---------------------NSELRFL----------L 289 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~--~~l~~s~~~~---------------------~~~l~~~----------~ 289 (449)
...++|.||||||||++++.++..+...- ..++.+.+.+ ......+ .
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 45799999999999999999998874210 1111111110 0011111 2
Q ss_pred HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc-Ccc--cc------CCCCeEEEEEcCCCC---
Q 013128 290 LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID-GLW--SC------CGEGRIIVFTTNHKE--- 357 (449)
Q Consensus 290 ~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~--~~------~~~~~iiI~tTN~~~--- 357 (449)
.......+|||||++.+- ..++..|++.|+ |.. .. ....+.+|+|+|...
T Consensus 290 l~~A~gGvLfLDEi~e~~------------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFE------------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred hhhccCCEEecCCchhCC------------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 223457899999998753 245666777774 221 11 123568899999753
Q ss_pred ------------------CCCccccCCCccceEEEeCCCCHH
Q 013128 358 ------------------KLDPALLRPGRMDMHLHMSYCNTS 381 (449)
Q Consensus 358 ------------------~ld~aLlrpgR~d~~i~l~~p~~~ 381 (449)
+|..+++. |||+++.+++++.+
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 47778999 99999999999866
No 222
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.58 E-value=6.3e-07 Score=85.39 Aligned_cols=173 Identities=19% Similarity=0.205 Sum_probs=94.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCC-CCceEEeeccchhhhcccccchhhhhcc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATN 321 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~ 321 (449)
..|-.++||+|||||.+++++|..+|..++.++|+.-.+-..+.+++.... ..+-+++||++++-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH-------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH-------------
Confidence 356789999999999999999999999999999999998888888887764 689999999998742
Q ss_pred chhhHH---HHHHHHHHhcCcc---------ccCCCCeEEEEEcCC----CCCCCccccCCCccceEEEeCCCCHHHHHH
Q 013128 322 QEENKV---TLSGLLNFIDGLW---------SCCGEGRIIVFTTNH----KEKLDPALLRPGRMDMHLHMSYCNTSVFKQ 385 (449)
Q Consensus 322 ~~~~~~---~ls~LL~~ldg~~---------~~~~~~~iiI~tTN~----~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~ 385 (449)
+.... .+..+.+.+..-. -......-++.|.|. ...||+.|.. -| +-+.|..||.....+
T Consensus 99 -~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 99 -EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHH
Confidence 11111 1112222221100 000112335556663 3578888876 33 778999999887666
Q ss_pred HHHHHhCcCC-CCCHHHHHHHHHccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 013128 386 LAFNYLGISH-HYLFEQIEELIKEVNVTPAEVAGELMKSTNAEVSLNGLVKFLHA 439 (449)
Q Consensus 386 l~~~~l~~~~-~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 439 (449)
+.-.-.+..+ ..+...+..+.+. ..+.|-+....+-.|+.+...|..
T Consensus 175 i~L~s~GF~~a~~La~kl~~l~~l-------~~~~lS~q~hydfgLRalk~vl~~ 222 (231)
T PF12774_consen 175 ILLLSQGFKDAKSLAKKLVSLFQL-------CKEQLSKQDHYDFGLRALKSVLRM 222 (231)
T ss_dssp HHHHCCCTSSHHHHHHHHHHHHHH-------HHHCS-SSTT---SHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHH-------HHHhhccCccccccHHHHHHHHHH
Confidence 6655555432 2334444433321 122222334555555555544443
No 223
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.56 E-value=3.8e-07 Score=92.01 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=104.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE-------------
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI------------- 271 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~------------- 271 (449)
...|.-++|.+..|..+.-... .|.-.|+|+-|+.|||||++++|+|.-|.--.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4568889999999987754322 12246899999999999999999999993211
Q ss_pred ---------------------------EEEecccccC----hHHHHHHHH-----------cCCCCceEEeeccchhhhc
Q 013128 272 ---------------------------YDLDLSAVQS----NSELRFLLL-----------TMPSRSMLVIEDIDCSVKL 309 (449)
Q Consensus 272 ---------------------------~~l~~s~~~~----~~~l~~~~~-----------~~~~~~Il~iDeiD~l~~~ 309 (449)
+.+.++...+ .-.+.+.+. ...++.||++||+..+-.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d- 158 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-
Confidence 1111111100 011122222 123678999999987742
Q ss_pred ccccchhhhhccchhhHHHHHHHHHHhc---------CccccCCCCeEEEEEcCCC-CCCCccccCCCccceEEEeCCC-
Q 013128 310 QNRESSEVQATNQEENKVTLSGLLNFID---------GLWSCCGEGRIIVFTTNHK-EKLDPALLRPGRMDMHLHMSYC- 378 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~~~~~iiI~tTN~~-~~ld~aLlrpgR~d~~i~l~~p- 378 (449)
.....||+.+. |+.-..+-.+++|+|+|.- ..|-|-|+. ||+.+|...+|
T Consensus 159 -----------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~ 219 (423)
T COG1239 159 -----------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPL 219 (423)
T ss_pred -----------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCC
Confidence 35566776664 3333334567899999986 468888999 99999999776
Q ss_pred CHHHHHHHHHHHhCc
Q 013128 379 NTSVFKQLAFNYLGI 393 (449)
Q Consensus 379 ~~~~r~~l~~~~l~~ 393 (449)
+.+++.++..+-+..
T Consensus 220 ~~~~rv~Ii~r~~~f 234 (423)
T COG1239 220 DLEERVEIIRRRLAF 234 (423)
T ss_pred CHHHHHHHHHHHHHh
Confidence 457788888776654
No 224
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.2e-06 Score=82.42 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=79.8
Q ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHcC----------------------CcEEEEeccc-ccChHHHHHH---HHcCC-
Q 013128 241 AWKRGYLLYGPPGTGKSSLIAAMANQLK----------------------FDIYDLDLSA-VQSNSELRFL---LLTMP- 293 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~la~aiA~~l~----------------------~~~~~l~~s~-~~~~~~l~~~---~~~~~- 293 (449)
..+.++||+||+|+||..+|.++|..+- .|++.+.... .-...+.+.+ +...+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3467899999999999999999998872 2344432211 1122333333 32222
Q ss_pred ---CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccc
Q 013128 294 ---SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMD 370 (449)
Q Consensus 294 ---~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d 370 (449)
..-|++|+++|.+.. ...+.||..++.- +...++|++|+.++.+.|.+++ |..
T Consensus 85 e~~~~KV~II~~ae~m~~------------------~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~S--RCq 140 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK------------------QSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILS--RCV 140 (261)
T ss_pred hcCCCEEEEeccHhhhCH------------------HHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhh--hee
Confidence 357999999998743 3567799999863 5678999999999999999999 874
Q ss_pred eEEEeCCC
Q 013128 371 MHLHMSYC 378 (449)
Q Consensus 371 ~~i~l~~p 378 (449)
.+.++.+
T Consensus 141 -~~~~~~~ 147 (261)
T PRK05818 141 -QYVVLSK 147 (261)
T ss_pred -eeecCCh
Confidence 4667666
No 225
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.55 E-value=2.3e-06 Score=90.19 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=97.7
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHH
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSE 284 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 284 (449)
+.+++|.....+.+.+.+..... ....+|+.|++||||+++|+++.... +.+++.++|..+... .
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~-~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD-L 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH-H
Confidence 55677777666666665544332 13579999999999999999999987 468999999988432 2
Q ss_pred HHH-HHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC-
Q 013128 285 LRF-LLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG- 344 (449)
Q Consensus 285 l~~-~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~- 344 (449)
+.. +|. ....++.|||||||.+.. .....|+.+++.-. ...+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------------~~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------------DVQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------------HHHHHHHHHHhcCcEEeCCC
Confidence 222 221 123467899999998853 12344666665321 1001
Q ss_pred -----CCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 345 -----EGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 345 -----~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
..+-||+||+.. ..+.+.|.. |+ ...|++|+... ++...|+..|+.
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 123566666542 234556665 66 57788887654 566677777765
No 226
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.52 E-value=3.4e-06 Score=81.08 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=37.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.++|..+.++..- .+...++.+. -.+|++||.||||||||.||-+|+++||
T Consensus 38 ~g~vGQ~~AReAag-iivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 38 AGFVGQENAREAAG-IIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccchhhhhhhh-HHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 45678877766532 2233333332 2368999999999999999999999995
No 227
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.52 E-value=6.1e-07 Score=98.95 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=81.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC-------cEEEEecccccC-hHHH-HHH-----HHcCCCCceEEeeccchhhhc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF-------DIYDLDLSAVQS-NSEL-RFL-----LLTMPSRSMLVIEDIDCSVKL 309 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~l~~s~~~~-~~~l-~~~-----~~~~~~~~Il~iDeiD~l~~~ 309 (449)
-.+||.|+||||||.+++++++.... +...++++.... .... ... .......++++|||+|.+..
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~- 571 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN- 571 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH-
Confidence 35999999999999999999987643 333344433211 0000 000 01123568999999998742
Q ss_pred ccccchhhhhccchhhHHHHHHHHHHhcC---------ccccCCCCeEEEEEcCCCC-------------CCCccccCCC
Q 013128 310 QNRESSEVQATNQEENKVTLSGLLNFIDG---------LWSCCGEGRIIVFTTNHKE-------------KLDPALLRPG 367 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~~-------------~ld~aLlrpg 367 (449)
...+.|+..|+. .....+...-||+|+|... .|+++|+.
T Consensus 572 -----------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS-- 632 (915)
T PTZ00111 572 -----------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT-- 632 (915)
T ss_pred -----------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--
Confidence 233456666642 2222234568899999852 36799999
Q ss_pred ccceEE-EeCCCCHHHHHHHHHHHhC
Q 013128 368 RMDMHL-HMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 368 R~d~~i-~l~~p~~~~r~~l~~~~l~ 392 (449)
|||... .++.|+.+.=+.|+.+.+.
T Consensus 633 RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 633 RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 998764 4588888777777666553
No 228
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.51 E-value=4e-06 Score=88.98 Aligned_cols=195 Identities=17% Similarity=0.210 Sum_probs=114.3
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEecccc
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLDLSAV 279 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~s~~ 279 (449)
.|...+.....|...+..++... .....+++.|-||||||.+++.+-+.| .++++.+|.-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 34445555555555555555431 113468899999999999999999977 366777776555
Q ss_pred cCh----------------------HHHHHHHH---cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 280 QSN----------------------SELRFLLL---TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 280 ~~~----------------------~~l~~~~~---~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
.+. ..|.+-|. ....++||+|||+|.+... ...-|.|
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr------------------~QdVlYn 530 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR------------------SQDVLYN 530 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc------------------cHHHHHH
Confidence 432 12223333 1236799999999999741 1122667
Q ss_pred HhcCccccCCCCeEEEEEcCCCCCC----CccccCCCccc-eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc
Q 013128 335 FIDGLWSCCGEGRIIVFTTNHKEKL----DPALLRPGRMD-MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV 409 (449)
Q Consensus 335 ~ldg~~~~~~~~~iiI~tTN~~~~l----d~aLlrpgR~d-~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~ 409 (449)
++|-.... +...+||+..|+.+.. ....-. |++ ..|.|.+.+.+|.++|+..-|....+-..+.++-..+.+
T Consensus 531 ~fdWpt~~-~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkV 607 (767)
T KOG1514|consen 531 IFDWPTLK-NSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKV 607 (767)
T ss_pred HhcCCcCC-CCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHH
Confidence 77754432 4556777767765432 222222 443 357778888999999998877755333233333222222
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 013128 410 NVTPAEVAGELMKSTNAEVSLNGLVKFLHAKMTQ 443 (449)
Q Consensus 410 ~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 443 (449)
+ .-++|...|++-...+.+.....
T Consensus 608 A----------avSGDaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 608 A----------AVSGDARRALDICRRAAEIAEER 631 (767)
T ss_pred H----------hccccHHHHHHHHHHHHHHhhhh
Confidence 1 11345566665555555544433
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.50 E-value=1.6e-06 Score=82.85 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=110.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-CCc----------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-KFD---------- 270 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~---------- 270 (449)
..+|.+++.+.+..+....+..... ..+ -.++|+|||+|+||-|.+.++-+++ |..
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~----~~d---------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS----TGD---------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc----cCC---------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 7889999999888887776654332 111 1479999999999999999999998 211
Q ss_pred ------------------EEEEecccccChHH--HHHHHHcCC-----------CCceEEeeccchhhhcccccchhhhh
Q 013128 271 ------------------IYDLDLSAVQSNSE--LRFLLLTMP-----------SRSMLVIEDIDCSVKLQNRESSEVQA 319 (449)
Q Consensus 271 ------------------~~~l~~s~~~~~~~--l~~~~~~~~-----------~~~Il~iDeiD~l~~~~~~~~~~~~~ 319 (449)
-+.++.|+....++ +..++.... .--+++|-|.|.+..
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------- 141 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------- 141 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----------
Confidence 11223333322111 122222221 224899999998843
Q ss_pred ccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH
Q 013128 320 TNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF 399 (449)
Q Consensus 320 ~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~ 399 (449)
....+|-..|+...+. .-+|..+|....+=+++.+ |. ..|.+|.|+.++.-.++...+..++..+.
T Consensus 142 -------dAQ~aLRRTMEkYs~~----~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp 207 (351)
T KOG2035|consen 142 -------DAQHALRRTMEKYSSN----CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLP 207 (351)
T ss_pred -------HHHHHHHHHHHHHhcC----ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 1223455556554333 3567788888888889988 76 56999999999999999999998887776
Q ss_pred HHH
Q 013128 400 EQI 402 (449)
Q Consensus 400 ~~i 402 (449)
.++
T Consensus 208 ~~~ 210 (351)
T KOG2035|consen 208 KEL 210 (351)
T ss_pred HHH
Confidence 554
No 230
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.49 E-value=3.4e-06 Score=88.16 Aligned_cols=154 Identities=20% Similarity=0.213 Sum_probs=92.8
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChH
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNS 283 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 283 (449)
.+..+++.....+.+.+.+..... ....++|+|++||||+++|+++.... +.+++.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~- 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN- 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH-
Confidence 345566666666666665543322 13579999999999999999998876 468999999988542
Q ss_pred HHHHH-HH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC
Q 013128 284 ELRFL-LL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG 344 (449)
Q Consensus 284 ~l~~~-~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~ 344 (449)
.+... |. ....+++||||||+.+.. .....|+..++.-. ...+
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~------------------~~q~~l~~~l~~~~~~~~~ 266 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL------------------NLQAKLLRFLQERVIERLG 266 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH------------------HHHHHHHHHHhhCeEEeCC
Confidence 22222 11 113568999999999853 23344666664211 1111
Q ss_pred ------CCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 345 ------EGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 345 ------~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
..+-+|+||+.. ..+.+.|.. |+ ...|++|+... ++...|+..|+.
T Consensus 267 ~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 267 GREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred CCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHH
Confidence 134566666553 234444443 44 35667776643 344556666654
No 231
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.47 E-value=6.3e-06 Score=89.27 Aligned_cols=50 Identities=34% Similarity=0.369 Sum_probs=40.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
.-+++++|.++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 457889999888876655443 13589999999999999999999999654
No 232
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.46 E-value=4.1e-06 Score=86.97 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=86.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccc
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSA 278 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 278 (449)
.....+|++|+|......++++.+..+... ...+||.|.+||||..+|++|-+.. +-+|+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~t-----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKT-----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCC-----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 345668999999988887777766554432 3579999999999999999999887 57999999998
Q ss_pred ccCh---HHHH----HHHH-----------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC--
Q 013128 279 VQSN---SELR----FLLL-----------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-- 338 (449)
Q Consensus 279 ~~~~---~~l~----~~~~-----------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-- 338 (449)
+-.. ++|. -.|. +..+.+-||||||..+.. .....||..+..
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl------------------~LQaKLLRVLQEke 368 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL------------------PLQAKLLRVLQEKE 368 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH------------------HHHHHHHHHHhhce
Confidence 8432 2221 1111 223567899999987742 234556766641
Q ss_pred ---c--cccCCCCeEEEEEcCCC
Q 013128 339 ---L--WSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 339 ---~--~~~~~~~~iiI~tTN~~ 356 (449)
+ ...-.-.+-||+|||..
T Consensus 369 i~rvG~t~~~~vDVRIIAATN~n 391 (560)
T COG3829 369 IERVGGTKPIPVDVRIIAATNRN 391 (560)
T ss_pred EEecCCCCceeeEEEEEeccCcC
Confidence 1 11112236789999973
No 233
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=1.3e-06 Score=77.83 Aligned_cols=134 Identities=21% Similarity=0.247 Sum_probs=73.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC---------cEEEEecccccChH---HHH------------------HHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF---------DIYDLDLSAVQSNS---ELR------------------FLLLTMP 293 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~---------~~~~l~~s~~~~~~---~l~------------------~~~~~~~ 293 (449)
|-++|+|+||+|||++++.++..+.. -++.+.+....... .+. ..+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35789999999999999999988821 12334443332211 111 1233345
Q ss_pred CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC-CCCccccCCCccceE
Q 013128 294 SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE-KLDPALLRPGRMDMH 372 (449)
Q Consensus 294 ~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~-~ld~aLlrpgR~d~~ 372 (449)
.+.+|+||.+|.+...... . ........+..+ +... ....-.++|.+..+.. .+...+.. ...
T Consensus 81 ~~~llilDglDE~~~~~~~--~-----~~~~~~~~l~~l---~~~~--~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS--Q-----ERQRLLDLLSQL---LPQA--LPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred CceEEEEechHhcccchhh--h-----HHHHHHHHHHHH---hhhc--cCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 6789999999998641111 0 001111223333 3321 1122234443332221 22222322 156
Q ss_pred EEeCCCCHHHHHHHHHHHhCc
Q 013128 373 LHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 373 i~l~~p~~~~r~~l~~~~l~~ 393 (449)
+++...+.++.++++++|+..
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 899999999999999998863
No 234
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.44 E-value=2.2e-06 Score=89.81 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=90.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHH
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSE 284 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 284 (449)
+..+++.......+.+.+...... ...+|++|++||||+++|+++.... +.+++.++|..+....-
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 345666555555555555444332 3579999999999999999998875 47899999998854321
Q ss_pred HHHHHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC--
Q 013128 285 LRFLLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG-- 344 (449)
Q Consensus 285 l~~~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~-- 344 (449)
-..+|. .....++|||||||.+.. .....|++.++.-. ...+
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~------------------~~q~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL------------------VLQAKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH------------------HHHHHHHHHHhcCcEEeCCCC
Confidence 112221 113467999999999853 23345666665321 1101
Q ss_pred ----CCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 345 ----EGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 345 ----~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
..+-||+|||.. ..+.+.|.. |+ ...|.+|+... ++...|+..|+.
T Consensus 273 ~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~~~~i~~ppLreR~~di~~l~~~~l~ 332 (457)
T PRK11361 273 QTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLNVIHLILPPLRDRREDISLLANHFLQ 332 (457)
T ss_pred ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhchhhHHHHHHHHHH
Confidence 235677777753 123333333 33 34555655542 444556666654
No 235
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1e-05 Score=79.38 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=79.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC----------------CcEEEEecccc---cChHHHHHHHHcC---C---CCce
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK----------------FDIYDLDLSAV---QSNSELRFLLLTM---P---SRSM 297 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~----------------~~~~~l~~s~~---~~~~~l~~~~~~~---~---~~~I 297 (449)
+.+|||+||+|+||+.+|.++|..+- .+++.+....- -.-..++.+.... + ..-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 56899999999999999999999882 34555533211 1233444433332 2 3469
Q ss_pred EEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCC
Q 013128 298 LVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 298 l~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~ 377 (449)
++||++|.+.. ...+.||..++.. ++.+++|..|+.++.|.|.+++ |+ ..+.|+.
T Consensus 99 ~ii~~ad~mt~------------------~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~ 153 (290)
T PRK05917 99 YIIHEADRMTL------------------DAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPM 153 (290)
T ss_pred EEEechhhcCH------------------HHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccc
Confidence 99999998853 3457799999863 5678999999999999999998 77 4567765
Q ss_pred C
Q 013128 378 C 378 (449)
Q Consensus 378 p 378 (449)
+
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.42 E-value=6.9e-06 Score=85.08 Aligned_cols=74 Identities=23% Similarity=0.379 Sum_probs=56.9
Q ss_pred cccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 192 HMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
+..|.. ...|.+.++|+-......+|.+++..+..... ....+-+||.||+|||||+.++-||.++|+.+
T Consensus 69 ~elW~e----Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 69 FELWVE----KYKPRTLEELAVHKKKISEVKQWLKQVAEFTP------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred cchhHH----hcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc------CCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 456855 88999999999988888888777773222111 11245688999999999999999999999988
Q ss_pred EEEe
Q 013128 272 YDLD 275 (449)
Q Consensus 272 ~~l~ 275 (449)
..-.
T Consensus 139 ~Ew~ 142 (634)
T KOG1970|consen 139 IEWS 142 (634)
T ss_pred eeec
Confidence 8654
No 237
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.41 E-value=5.5e-06 Score=87.05 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=97.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSEL 285 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l 285 (449)
..+++......++...+...... ...+++.|.+||||+++++++.... +.+++.++|..+..+ .+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~-~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKD-LI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH-HH
Confidence 45677766666777666543321 3579999999999999999998876 468999999987432 22
Q ss_pred HHHH-H-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc-cccCC--
Q 013128 286 RFLL-L-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL-WSCCG-- 344 (449)
Q Consensus 286 ~~~~-~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~~~~-- 344 (449)
...+ . ....++.|||||||.+.. .....|++.++.- ....+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------------~~q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------------DAQTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------------HHHHHHHHHHhcCcEEECCCC
Confidence 2222 1 123468899999998853 1234466666521 11111
Q ss_pred ----CCeEEEEEcCCC-------CCCCccccCCCccc-eEEEeCCCC--HHHHHHHHHHHhCc
Q 013128 345 ----EGRIIVFTTNHK-------EKLDPALLRPGRMD-MHLHMSYCN--TSVFKQLAFNYLGI 393 (449)
Q Consensus 345 ----~~~iiI~tTN~~-------~~ld~aLlrpgR~d-~~i~l~~p~--~~~r~~l~~~~l~~ 393 (449)
..+-||+||+.. ..+.+.|.. |+. .+|++|+.. .++...|+..|+..
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHH
Confidence 134566666543 233444444 454 588899887 57788888877653
No 238
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.41 E-value=1.6e-06 Score=96.09 Aligned_cols=188 Identities=22% Similarity=0.288 Sum_probs=122.0
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcC-hhHHhhhcCCC-Cc-ceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNG-KEYYTRIGRAW-KR-GYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~-~~~~~~~g~~~-~r-g~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
..|.. .+.|.....+.+....-..+.+.+..+-+. +..|...+... .. ..|++||||+|||+.+.++|.++++
T Consensus 308 ~~~~~----k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~ 383 (871)
T KOG1968|consen 308 AGWTE----KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF 383 (871)
T ss_pred ccccc----ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc
Confidence 35655 667777788888877777888887776322 12222222111 12 3699999999999999999999999
Q ss_pred cEEEEecccccChHHHHHHHHcCC--------------------CCceEEeeccchhhhcccccchhhhhccchhhHHHH
Q 013128 270 DIYDLDLSAVQSNSELRFLLLTMP--------------------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTL 329 (449)
Q Consensus 270 ~~~~l~~s~~~~~~~l~~~~~~~~--------------------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~l 329 (449)
.++..|.+...++..+...+.... ...||++||+|.+.. .+|+. -..+
T Consensus 384 ~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~-----------v~~l 451 (871)
T KOG1968|consen 384 KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG-----------VSKL 451 (871)
T ss_pred ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh-----------HHHH
Confidence 999999998877655554333321 134999999998865 22221 1123
Q ss_pred HHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-HHHHHHHHH
Q 013128 330 SGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-FEQIEELIK 407 (449)
Q Consensus 330 s~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~ 407 (449)
+.+... ..+-||+|+|...-.....+. |-..-++|+.|+.++...-+..++..+...+ .+.++++..
T Consensus 452 ~~l~~k---------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~ 519 (871)
T KOG1968|consen 452 SSLCKK---------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISK 519 (871)
T ss_pred HHHHHh---------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHH
Confidence 333331 235688888887765553333 4446789999999988877777776654444 234444443
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=8e-07 Score=76.40 Aligned_cols=38 Identities=34% Similarity=0.631 Sum_probs=29.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc--------CCcEEEEeccccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL--------KFDIYDLDLSAVQ 280 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l--------~~~~~~l~~s~~~ 280 (449)
++.++++||||+|||++++.++..+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4578999999999999999999998 7788888766554
No 240
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.7e-05 Score=78.40 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=87.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC-------------cEEEEe--cccccChHHHHHHHHcC-------CCCceEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF-------------DIYDLD--LSAVQSNSELRFLLLTM-------PSRSMLVI 300 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~-------------~~~~l~--~s~~~~~~~l~~~~~~~-------~~~~Il~i 300 (449)
+..|||+|+.|+||+.++.++|+.+-. ++..++ ... ....+++.+.... ...-|++|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 567999999999999999999999711 344444 221 2234455444433 25679999
Q ss_pred eccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCH
Q 013128 301 EDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNT 380 (449)
Q Consensus 301 DeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~ 380 (449)
|++|.+.. ...+.||..|+.. ++..++|++|+.++.|-|.+.+ |+ ..++++.++.
T Consensus 97 ~~~e~m~~------------------~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 97 KNIEKTSN------------------SLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ecccccCH------------------HHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 99988732 3456799999874 5667888888888999999988 66 5699999998
Q ss_pred HHHHHHHHH
Q 013128 381 SVFKQLAFN 389 (449)
Q Consensus 381 ~~r~~l~~~ 389 (449)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887766554
No 241
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.4e-05 Score=75.81 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=82.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC------------------------CcEEEEeccc-ccChHHHHHHHHcC---C-
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK------------------------FDIYDLDLSA-VQSNSELRFLLLTM---P- 293 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s~-~~~~~~l~~~~~~~---~- 293 (449)
+.+|||+|| +||+++|.++|..+- .+++.+.... .-....++.+.... +
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~ 101 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGY 101 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcc
Confidence 568999996 689999999998772 2444444322 11234455443332 2
Q ss_pred --CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccce
Q 013128 294 --SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDM 371 (449)
Q Consensus 294 --~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~ 371 (449)
..-|++||++|.+.. ...+.||..++.. +...++|.+|+.++.|-|.+++ |+ .
T Consensus 102 ~~~~kV~II~~ad~m~~------------------~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q 156 (290)
T PRK07276 102 EGKQQVFIIKDADKMHV------------------NAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-Q 156 (290)
T ss_pred cCCcEEEEeehhhhcCH------------------HHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-e
Confidence 356999999999853 3567799999873 4568999999999999999998 77 5
Q ss_pred EEEeCCCCHHHHHHHHH
Q 013128 372 HLHMSYCNTSVFKQLAF 388 (449)
Q Consensus 372 ~i~l~~p~~~~r~~l~~ 388 (449)
+|+|+. +.+...+++.
T Consensus 157 ~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 157 IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeeCCC-cHHHHHHHHH
Confidence 688876 5555444443
No 242
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.36 E-value=8.8e-07 Score=89.86 Aligned_cols=96 Identities=20% Similarity=0.389 Sum_probs=61.7
Q ss_pred CCCCcceEEeCCCCCCHHHHHHHHHHHcCC------cEEEE--e----ccccc-ChHHHHHHHHcCCCC-ceEEeeccch
Q 013128 240 RAWKRGYLLYGPPGTGKSSLIAAMANQLKF------DIYDL--D----LSAVQ-SNSELRFLLLTMPSR-SMLVIEDIDC 305 (449)
Q Consensus 240 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------~~~~l--~----~s~~~-~~~~l~~~~~~~~~~-~Il~iDeiD~ 305 (449)
.+.++|++||||+|+|||+|.-+..+.+.. ++... + +..+. ....+........+. .||+|||++.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 456899999999999999999999998854 11111 0 00111 112233333333344 4999999986
Q ss_pred hhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 306 SVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 306 l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
- +-.....+..|+..+= ..++++|+|+|.+
T Consensus 139 ~---------------DiaDAmil~rLf~~l~------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T---------------DIADAMILKRLFEALF------KRGVVLVATSNRP 168 (362)
T ss_pred c---------------chhHHHHHHHHHHHHH------HCCCEEEecCCCC
Confidence 3 2233567777777662 2578999999985
No 243
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=9.4e-06 Score=82.74 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=109.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC-----CcEEEEecccccCh
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK-----FDIYDLDLSAVQSN 282 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~~s~~~~~ 282 (449)
=.++.|.+.....+.+.+...+.... ++++++.|-||||||.+..-+-..+. ...++++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t---------~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNT---------SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhccc---------CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 36788888888888888777776543 56799999999999999887776663 35578888876432
Q ss_pred HHH---------------------HHHHHc----CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc
Q 013128 283 SEL---------------------RFLLLT----MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID 337 (449)
Q Consensus 283 ~~l---------------------~~~~~~----~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 337 (449)
..+ ...|.. ...+-|+++||+|.++. +++ +.|-.++
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t-r~~------------------~vLy~lF 280 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT-RSQ------------------TVLYTLF 280 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh-ccc------------------ceeeeeh
Confidence 111 112222 12467999999999973 111 1223333
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccccC----CCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 338 GLWSCCGEGRIIVFTTNHKEKLDPALLR----PGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 338 g~~~~~~~~~iiI~tTN~~~~ld~aLlr----pgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.+....+..+++|+..|..+.-|..|.| -+.-...+.|++.+.++..+|++.-+....
T Consensus 281 ewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 281 EWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred hcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 3333335678888999998766655432 344567799999999999999998887653
No 244
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.3e-06 Score=89.57 Aligned_cols=48 Identities=33% Similarity=0.478 Sum_probs=39.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
...|.|+.|.+..|+.+.-.. ....++|++||||||||++|+-|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999998775332 225789999999999999999988877
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=98.32 E-value=8.9e-06 Score=85.02 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=78.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHHH-HHH-----------------cCCCCceEEeec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELRF-LLL-----------------TMPSRSMLVIED 302 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~-~~~-----------------~~~~~~Il~iDe 302 (449)
..++|+|++||||+++|+++.... +.+++.++|..+... .+.. +|. .....+.|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ-LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH-HHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 569999999999999999998886 478999999987432 2222 221 123467999999
Q ss_pred cchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC------CCeEEEEEcCCCCCCCccccCCCcc------
Q 013128 303 IDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG------EGRIIVFTTNHKEKLDPALLRPGRM------ 369 (449)
Q Consensus 303 iD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~------~~~iiI~tTN~~~~ld~aLlrpgR~------ 369 (449)
||.+.. .....|+.+++.-. ...| ..+.+|+||+.. ++. +...|+|
T Consensus 237 i~~l~~------------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~l~~ 295 (444)
T PRK15115 237 IGDMPA------------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPK-AMARGEFREDLYY 295 (444)
T ss_pred cccCCH------------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHH-HHHcCCccHHHHH
Confidence 999853 12344666665321 1111 135677777752 322 2233444
Q ss_pred ---ceEEEeCCCCH--HHHHHHHHHHhC
Q 013128 370 ---DMHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 370 ---d~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
...|++|+... +....|+..|+.
T Consensus 296 ~l~~~~i~lPpLr~R~eDi~~l~~~~l~ 323 (444)
T PRK15115 296 RLNVVSLKIPALAERTEDIPLLANHLLR 323 (444)
T ss_pred hhceeeecCCChHhccccHHHHHHHHHH
Confidence 45666666543 345556666654
No 246
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.1e-06 Score=93.37 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=83.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcC-CCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh--
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGR-AWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN-- 282 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~-- 282 (449)
+.++|+++....|-+.+.....+- +. .+.-.+||.||.|+|||-||+|+|..+ .-.++.+|++++...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl------~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL------KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc------CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 356788888888877776554321 11 234459999999999999999999998 457889999874321
Q ss_pred -----------HHHHHHHH--cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC-----
Q 013128 283 -----------SELRFLLL--TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG----- 344 (449)
Q Consensus 283 -----------~~l~~~~~--~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~----- 344 (449)
.....+.. +....+||+|||||..-. ..++.|++.+|.-.-..+
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~------------------~v~n~llq~lD~GrltDs~Gr~V 697 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP------------------DVLNILLQLLDRGRLTDSHGREV 697 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH------------------HHHHHHHHHHhcCccccCCCcEe
Confidence 11112222 224569999999997532 466778888874322222
Q ss_pred --CCeEEEEEcCCC
Q 013128 345 --EGRIIVFTTNHK 356 (449)
Q Consensus 345 --~~~iiI~tTN~~ 356 (449)
.+.|||+|+|.-
T Consensus 698 d~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 698 DFKNAIFIMTSNVG 711 (898)
T ss_pred eccceEEEEecccc
Confidence 346999998863
No 247
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.30 E-value=7.9e-06 Score=80.00 Aligned_cols=143 Identities=23% Similarity=0.263 Sum_probs=76.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH--c--CCc-EEEEecccccChH------------------------HHHHHHHc--
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ--L--KFD-IYDLDLSAVQSNS------------------------ELRFLLLT-- 291 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~--l--~~~-~~~l~~s~~~~~~------------------------~l~~~~~~-- 291 (449)
.+-+.|+|++|+|||+||..+++. . .++ ++-++++...+.. .+...+.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 456899999999999999999988 3 233 2334433322111 11111111
Q ss_pred CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccce
Q 013128 292 MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDM 371 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~ 371 (449)
...+++|||||++... .+..+...+-. ...+.-||.||....-. ... +.-..
T Consensus 99 ~~~~~LlVlDdv~~~~--------------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~---~~~~~ 150 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE--------------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSL---GGTDK 150 (287)
T ss_dssp CCTSEEEEEEEE-SHH--------------------HH-------HC----HHSS-EEEEEESCGGGG-TTH---HSCEE
T ss_pred ccccceeeeeeecccc--------------------ccccccccccc----ccccccccccccccccc-ccc---ccccc
Confidence 1348999999998642 12222222211 11234566677653211 111 11157
Q ss_pred EEEeCCCCHHHHHHHHHHHhCcCC----CCCHHHHHHHHHccCCCH
Q 013128 372 HLHMSYCNTSVFKQLAFNYLGISH----HYLFEQIEELIKEVNVTP 413 (449)
Q Consensus 372 ~i~l~~p~~~~r~~l~~~~l~~~~----~~l~~~i~~l~~~~~~tp 413 (449)
.++++..+.++-.+++..+.+... ..+.+...++++..+-.|
T Consensus 151 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 151 VIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp EEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999987644 233444455555555555
No 248
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.27 E-value=8.8e-06 Score=79.59 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---------CcEEEEecccccChHHHH---
Q 013128 219 REITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---------FDIYDLDLSAVQSNSELR--- 286 (449)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---------~~~~~l~~s~~~~~~~l~--- 286 (449)
+++.+.+...+..|.. .-..++||+|++|.|||++++..+.... .+++.+.+-.--+...+-
T Consensus 43 ~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 3466777777776641 2246899999999999999999997662 356666543332222211
Q ss_pred ---------------------HHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCC
Q 013128 287 ---------------------FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGE 345 (449)
Q Consensus 287 ---------------------~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 345 (449)
.-+.+.-+.-+|+|||++.++..+. .. + ..+||.+-.+.+...=
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-----------~~-q---r~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-----------RK-Q---REFLNALKFLGNELQI 181 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-----------HH-H---HHHHHHHHHHhhccCC
Confidence 1122334677999999999764111 11 1 2233333333222122
Q ss_pred CeEEEEEcCCCC--CCCccccCCCccceEEEeCC-CCHHHHHHHHHHHhCc---C-CCCC-HHHH-HHHHHccCCCHHHH
Q 013128 346 GRIIVFTTNHKE--KLDPALLRPGRMDMHLHMSY-CNTSVFKQLAFNYLGI---S-HHYL-FEQI-EELIKEVNVTPAEV 416 (449)
Q Consensus 346 ~~iiI~tTN~~~--~ld~aLlrpgR~d~~i~l~~-p~~~~r~~l~~~~l~~---~-~~~l-~~~i-~~l~~~~~~tpa~i 416 (449)
.++.++|..-.. .-|+-+.+ ||+. +.+|. -..+++..|+..|-.. . ...+ ..++ ..+....+=+..++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 234444433222 23777877 9965 45554 2335667777665442 1 1112 2233 44555555455566
Q ss_pred HHHHh
Q 013128 417 AGELM 421 (449)
Q Consensus 417 ~~~l~ 421 (449)
..++.
T Consensus 259 ~~ll~ 263 (302)
T PF05621_consen 259 SRLLN 263 (302)
T ss_pred HHHHH
Confidence 55554
No 249
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=2.7e-05 Score=90.84 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=90.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE---EEEeccc
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI---YDLDLSA 278 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---~~l~~s~ 278 (449)
...+..+++++|.++..+++...+. .+....+-+-|+||+|+||||||+++++.+...+ +.++...
T Consensus 177 ~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~ 245 (1153)
T PLN03210 177 LTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAF 245 (1153)
T ss_pred cccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccc
Confidence 3445678899999888877766542 1122246688999999999999999999874321 1111100
Q ss_pred cc------------C-h--HHH-----HHHHH--------------c-CCCCceEEeeccchhhhcccccchhhhhccch
Q 013128 279 VQ------------S-N--SEL-----RFLLL--------------T-MPSRSMLVIEDIDCSVKLQNRESSEVQATNQE 323 (449)
Q Consensus 279 ~~------------~-~--~~l-----~~~~~--------------~-~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~ 323 (449)
+. . + ..+ ..++. . ..++.+|+|||+|...
T Consensus 246 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~---------------- 309 (1153)
T PLN03210 246 ISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD---------------- 309 (1153)
T ss_pred cccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH----------------
Confidence 00 0 0 000 01111 0 1357799999987531
Q ss_pred hhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 324 ENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 324 ~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.+..|....+ |. +.+.-||.||.+. .+++....+..++++.|+.++..+|+..+.....
T Consensus 310 ----~l~~L~~~~~--~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~ 368 (1153)
T PLN03210 310 ----VLDALAGQTQ--WF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN 368 (1153)
T ss_pred ----HHHHHHhhCc--cC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC
Confidence 1222332222 11 2334456667653 3333234677899999999999999998875443
No 250
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.24 E-value=8.7e-06 Score=92.42 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=94.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHH-----------------HHHHHcCCCCceEEeeccch
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSEL-----------------RFLLLTMPSRSMLVIEDIDC 305 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l-----------------~~~~~~~~~~~Il~iDeiD~ 305 (449)
.+++||.|.||+|||+|+.|+|+..|-.++.+++++-.+--.| ..++..+....-+++||+..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 4689999999999999999999999999999998876432111 13455556788899999975
Q ss_pred hhhcccccchhhhhccchhhHHHHHHHHHHhcC-----------ccccCCCCeEEEEEcCCC------CCCCccccCCCc
Q 013128 306 SVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-----------LWSCCGEGRIIVFTTNHK------EKLDPALLRPGR 368 (449)
Q Consensus 306 l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-----------~~~~~~~~~iiI~tTN~~------~~ld~aLlrpgR 368 (449)
.. +.++.||-..+|. ..+ +.....|++|-|.- ..|+..++. |
T Consensus 1623 aS------------------QSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n--R 1681 (4600)
T COG5271 1623 AS------------------QSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--R 1681 (4600)
T ss_pred hH------------------HHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh--h
Confidence 32 2455566555552 222 33455666676654 358999999 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhCcC
Q 013128 369 MDMHLHMSYCNTSVFKQLAFNYLGIS 394 (449)
Q Consensus 369 ~d~~i~l~~p~~~~r~~l~~~~l~~~ 394 (449)
|. .|.|...+.+....|+.+.+..-
T Consensus 1682 Fs-vV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1682 FS-VVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred hh-eEEecccccchHHHHHHhhCCcc
Confidence 94 58888888888888888777643
No 251
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.24 E-value=3e-05 Score=80.32 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=99.7
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEecccccChH
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSAVQSNS 283 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~~ 283 (449)
.+..++|.....+++.+.+...... ...||++|++||||-.+|++|-.... .+|+.+||..+-.+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567888888888888877655443 35799999999999999999998884 599999999986442
Q ss_pred HHHHHHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc-CccccCC-
Q 013128 284 ELRFLLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID-GLWSCCG- 344 (449)
Q Consensus 284 ~l~~~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~~~~~- 344 (449)
--..+|- +....+.||||||..+.. .....||..+. +-....|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl------------------~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL------------------ELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH------------------HHHHHHHHHHHcCeeEecCC
Confidence 2222222 123578999999998742 23344666664 2111112
Q ss_pred -----CCeEEEEEcCCCCCCCccccCCCccc---------eEEEeCCCCH--HHHHHHHHHHhCc
Q 013128 345 -----EGRIIVFTTNHKEKLDPALLRPGRMD---------MHLHMSYCNT--SVFKQLAFNYLGI 393 (449)
Q Consensus 345 -----~~~iiI~tTN~~~~ld~aLlrpgR~d---------~~i~l~~p~~--~~r~~l~~~~l~~ 393 (449)
-.+=||++||.. |. .....|+|- ..|++|++-+ ++.--|+.+|+..
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~-~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LE-EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred CcccceeeEEEeecCcC--HH-HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHH
Confidence 235588888873 11 122223332 3566666644 5566677777653
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.23 E-value=8.1e-06 Score=86.32 Aligned_cols=161 Identities=21% Similarity=0.272 Sum_probs=94.9
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhc-CCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec-------ccc-c
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIG-RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL-------SAV-Q 280 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~-------s~~-~ 280 (449)
++.+.+++|+.++-.| |-.....+...| ....-+|||+|.||||||.|.+.+++-+..-.|.=-- +.. .
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4667888888775332 222222233333 1112359999999999999999999998666553211 100 1
Q ss_pred ChHHHHHHHHcC-----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc---------CccccCCCC
Q 013128 281 SNSELRFLLLTM-----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID---------GLWSCCGEG 346 (449)
Q Consensus 281 ~~~~l~~~~~~~-----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~~~~ 346 (449)
.+.+-++++.+. +..+|-+|||+|.+.. .+-+.|+..|+ |+-.+.+-.
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d------------------StrSvLhEvMEQQTvSIAKAGII~sLNAR 569 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD------------------STRSVLHEVMEQQTLSIAKAGIIASLNAR 569 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH------------------HHHHHHHHHHHHhhhhHhhcceeeecccc
Confidence 111222222222 4688999999999843 12233444443 443333344
Q ss_pred eEEEEEcCCCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHHHhC
Q 013128 347 RIIVFTTNHKE-------------KLDPALLRPGRMDMHLHM-SYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 347 ~iiI~tTN~~~-------------~ld~aLlrpgR~d~~i~l-~~p~~~~r~~l~~~~l~ 392 (449)
.=|+++.|..+ .|+|.|++ |||...-+ ..|++..=+.|..+...
T Consensus 570 ~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 570 CSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred ceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 56788888532 37899999 99976544 66776644555555444
No 253
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.20 E-value=1.8e-05 Score=82.60 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=89.0
Q ss_pred ccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHHH
Q 013128 211 LALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELRF 287 (449)
Q Consensus 211 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~ 287 (449)
+++.......+.+.+..+.. ....++++|.+||||+++++++.... +.+++.++|+.+.. ..+..
T Consensus 141 lig~s~~~~~~~~~i~~~~~-----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~ 208 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLES 208 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHH
Confidence 45555555555555532221 13579999999999999999998765 47899999998753 22332
Q ss_pred HH-H-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-ccCC----
Q 013128 288 LL-L-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-SCCG---- 344 (449)
Q Consensus 288 ~~-~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~---- 344 (449)
.+ . ....+++|||||||.+.. .....|+..++.-. ...+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~------------------~~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------------MMQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH------------------HHHHHHHHHHccCcEEeCCCCce
Confidence 22 1 123478899999999853 12344666665321 1111
Q ss_pred --CCeEEEEEcCCCCCCCccccCCCcc---------ceEEEeCCCCH--HHHHHHHHHHhCc
Q 013128 345 --EGRIIVFTTNHKEKLDPALLRPGRM---------DMHLHMSYCNT--SVFKQLAFNYLGI 393 (449)
Q Consensus 345 --~~~iiI~tTN~~~~ld~aLlrpgR~---------d~~i~l~~p~~--~~r~~l~~~~l~~ 393 (449)
..+-+|+||+..- ..+..+|+| ...|.+|+... ++...|+..|+..
T Consensus 271 ~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~ 329 (441)
T PRK10365 271 ISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQR 329 (441)
T ss_pred eeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHH
Confidence 1234566665421 122334444 35667776654 4566677777653
No 254
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.19 E-value=1.5e-05 Score=85.67 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=85.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC--cEEEEeccc----ccChHHHHHHHHc-----------CCCCceEEeeccchh
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF--DIYDLDLSA----VQSNSELRFLLLT-----------MPSRSMLVIEDIDCS 306 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~----~~~~~~l~~~~~~-----------~~~~~Il~iDeiD~l 306 (449)
.|+||-|++|||||+++++++..+.. ++..+..+. +.....+...+.. .....||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 68999999999999999999999854 776654432 1222333333322 234689999999876
Q ss_pred hhcccccchhhhhccchhhHHHHHHHHHHhcC---------ccccCCCCeEEEEEcCCC---CCCCccccCCCccceEEE
Q 013128 307 VKLQNRESSEVQATNQEENKVTLSGLLNFIDG---------LWSCCGEGRIIVFTTNHK---EKLDPALLRPGRMDMHLH 374 (449)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~d~~i~ 374 (449)
- ..+++.|++.|+. .....+...++|+|.|.. ..|.++++. ||+++|.
T Consensus 106 ~------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 106 E------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred C------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 4 3578889988862 222233456778875433 458999999 9999999
Q ss_pred eCCCCHHHH
Q 013128 375 MSYCNTSVF 383 (449)
Q Consensus 375 l~~p~~~~r 383 (449)
+++++..+.
T Consensus 166 v~~~~~~~~ 174 (584)
T PRK13406 166 LDGLALRDA 174 (584)
T ss_pred cCCCChHHh
Confidence 999987653
No 255
>PHA02774 E1; Provisional
Probab=98.17 E-value=9.5e-06 Score=85.61 Aligned_cols=58 Identities=26% Similarity=0.489 Sum_probs=43.4
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEE-EecccccChHHHHHHHHcCCCCceEEeecc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYD-LDLSAVQSNSELRFLLLTMPSRSMLVIEDI 303 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-l~~s~~~~~~~l~~~~~~~~~~~Il~iDei 303 (449)
|+|.+++++||||||||||+++.+|++.++..++. ++..+ ...+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 45556789999999999999999999999755543 55321 122444456679999999
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.16 E-value=1.6e-05 Score=70.21 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=42.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC-----------------------------hHH---HHHHHH
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS-----------------------------NSE---LRFLLL 290 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-----------------------------~~~---l~~~~~ 290 (449)
++|+||||+|||+++..++..+ +.+++.++...... ... ......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999987 44555554322110 011 112344
Q ss_pred cCCCCceEEeeccchhhh
Q 013128 291 TMPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 291 ~~~~~~Il~iDeiD~l~~ 308 (449)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 456788999999998864
No 257
>PHA02624 large T antigen; Provisional
Probab=98.15 E-value=6.4e-06 Score=87.20 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=80.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhh
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQ 318 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~ 318 (449)
|+|.++.+|||||||||||+++.+|++.++-.++.++... +.+.+.+.-+...-+.+|||+-.-.-....-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~--- 499 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKDLPS--- 499 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeeccccccccccCCc---
Confidence 6677889999999999999999999999966666665322 334456666667789999998643210000000
Q ss_pred hccchhhHHHHHHHHHHhcCccccC-----CCC-----eEEEEEcCCCCCCCccccCCCccceEEEeCC
Q 013128 319 ATNQEENKVTLSGLLNFIDGLWSCC-----GEG-----RIIVFTTNHKEKLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 319 ~~~~~~~~~~ls~LL~~ldg~~~~~-----~~~-----~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~ 377 (449)
+..-.-+.-|-+.+||--.-+ ... --.|.|||+. .|+..+.- ||-.++.|..
T Consensus 500 ----G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 500 ----GQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ----ccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HHHHhccccc
Confidence 000112345778888851100 011 1356788874 46778877 8988888764
No 258
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=6.1e-06 Score=77.90 Aligned_cols=133 Identities=16% Similarity=0.214 Sum_probs=68.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE----------------ecccccChHHHHHHHHcCCCCceEEeeccchhh
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL----------------DLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l----------------~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
..++|+|+||||||++|.++|+.++..+..+ +...+. ..+...+.......+|+|||+..-.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll--~~L~~a~~~~~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL--EKIQDAIDNDYRIPLIIFDDAGIWL 95 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH--HHHHHHHhcCCCCCEEEEeCCchhh
Confidence 3799999999999999999999986433332 222211 1222223333334689999976433
Q ss_pred hcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeC-CCCHHHHHHH
Q 013128 308 KLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMS-YCNTSVFKQL 386 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~-~p~~~~r~~l 386 (449)
..-... .......-.+.+.+. + .-.++++++..++.|-..|...|=....|.=- .-....++.+
T Consensus 96 ~~~~wh---------~~~~~~yf~L~~aLr---S---R~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en~~~~~~~~~~~ 160 (226)
T PHA00729 96 SKYVWY---------EDYMKTFYKIYALIR---T---RVSAVIFTTPSPEDLAFYLREKGWYQIRVTMVNRKTMTARATL 160 (226)
T ss_pred cccchh---------hhccchHHHHHHHHH---h---hCcEEEEecCCHHHHHHHHHhCCCcHHHhhhcccCcccchhhH
Confidence 200000 000011112333331 1 12367788888887777776644433333211 1111334555
Q ss_pred HHHHhCc
Q 013128 387 AFNYLGI 393 (449)
Q Consensus 387 ~~~~l~~ 393 (449)
.+.+...
T Consensus 161 ~~~~~~~ 167 (226)
T PHA00729 161 YSKDFGR 167 (226)
T ss_pred HHHHHhh
Confidence 5544443
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.04 E-value=1.8e-06 Score=86.95 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=85.5
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc----c-----c
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA----V-----Q 280 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~----~-----~ 280 (449)
++.|.+.+|..|.-.|..-...... ........-++||.|.||||||.|.+.+++.....+|.--.+. + .
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 4678888888775433222111000 0000111235999999999999999988877766655432111 1 0
Q ss_pred Ch--H--HHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC---------ccccCCCCe
Q 013128 281 SN--S--ELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG---------LWSCCGEGR 347 (449)
Q Consensus 281 ~~--~--~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~ 347 (449)
+. . .+..-..-....+|++|||+|.+-. .....|+..|+. +....+-..
T Consensus 104 d~~~~~~~leaGalvlad~GiccIDe~dk~~~------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGGICCIDEFDKMKE------------------DDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTSEEEECTTTT--C------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred ccccceeEEeCCchhcccCceeeecccccccc------------------hHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 10 0 0000001123679999999998742 123456777763 211122335
Q ss_pred EEEEEcCCCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHHHhCc
Q 013128 348 IIVFTTNHKE-------------KLDPALLRPGRMDMHLHM-SYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 348 iiI~tTN~~~-------------~ld~aLlrpgR~d~~i~l-~~p~~~~r~~l~~~~l~~ 393 (449)
-|++++|... .+++.|+. |||..+.+ ..++.+.=+.+.++.+..
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 6888988765 47889999 99988776 667767667777766664
No 260
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.01 E-value=1.5e-05 Score=73.91 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=61.6
Q ss_pred eEEeCCCCCCHHHHHHHH-HHHc---CCcEEEEeccccc-----C---------------------hHHHHHHHHcCCCC
Q 013128 246 YLLYGPPGTGKSSLIAAM-ANQL---KFDIYDLDLSAVQ-----S---------------------NSELRFLLLTMPSR 295 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~ai-A~~l---~~~~~~l~~s~~~-----~---------------------~~~l~~~~~~~~~~ 295 (449)
++++|.||+|||+.|-.. .... |.+++. +...+. . ...+ ......+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDP-DDWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGH-HHHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhh-hhhcccCCC
Confidence 688999999999988665 4332 666654 433221 1 0111 222233478
Q ss_pred ceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEe
Q 013128 296 SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHM 375 (449)
Q Consensus 296 ~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l 375 (449)
+||||||+...++.+..... .....++.+... ...+.-||++|.++..||+.+++ ..+.++++
T Consensus 81 ~liviDEa~~~~~~r~~~~~------------~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~ 143 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGK------------KVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--LVEYHYHC 143 (193)
T ss_dssp -EEEETTGGGTSB---T-T----------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEE
T ss_pred cEEEEECChhhcCCCccccc------------cchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEE
Confidence 99999999998874433111 112234555432 23567899999999999999987 88888877
Q ss_pred CCC
Q 013128 376 SYC 378 (449)
Q Consensus 376 ~~p 378 (449)
-.+
T Consensus 144 ~k~ 146 (193)
T PF05707_consen 144 RKL 146 (193)
T ss_dssp EE-
T ss_pred Eee
Confidence 554
No 261
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.00 E-value=8.6e-06 Score=85.92 Aligned_cols=66 Identities=27% Similarity=0.324 Sum_probs=51.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEec
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDL 276 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~ 276 (449)
+-.-|+++.|.++.+++|++.+......-+ ..++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~-------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLE-------EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcC-------CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 334589999999999999988865544321 124578899999999999999999998 467887654
No 262
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.99 E-value=1.7e-05 Score=74.91 Aligned_cols=23 Identities=48% Similarity=0.846 Sum_probs=20.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
+.-+|+||+||+|||++|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34599999999999999999974
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.98 E-value=5.3e-06 Score=70.38 Aligned_cols=31 Identities=39% Similarity=0.778 Sum_probs=27.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
|+|.||||+||||+++.+|+.+++.++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 264
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.95 E-value=5.1e-05 Score=74.58 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=100.9
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHH---HcCCcEEEEeccccc-Ch---
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN---QLKFDIYDLDLSAVQ-SN--- 282 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~---~l~~~~~~l~~s~~~-~~--- 282 (449)
.+.|..+..+.+.+.+.+-.-..+ ...+++.||.|+|||.++...-. +.|-+++.+-+.... ++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 467777888888888877665554 57899999999999998765544 456677666544321 10
Q ss_pred -----------------------HHHHHHHHcC-------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHH
Q 013128 283 -----------------------SELRFLLLTM-------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGL 332 (449)
Q Consensus 283 -----------------------~~l~~~~~~~-------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~L 332 (449)
..+.+++... ..+.|.++||||...+. .+.++ |
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h---------------~rQtl--l 158 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH---------------SRQTL--L 158 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc---------------hhhHH--H
Confidence 1112222211 12456778899987641 12233 6
Q ss_pred HHHhcCccccCCCCeEEEEEcCCCC---CCCccccCCCccceE-EEeC-CCCHHHHHHHHHHHhCc
Q 013128 333 LNFIDGLWSCCGEGRIIVFTTNHKE---KLDPALLRPGRMDMH-LHMS-YCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 333 L~~ldg~~~~~~~~~iiI~tTN~~~---~ld~aLlrpgR~d~~-i~l~-~p~~~~r~~l~~~~l~~ 393 (449)
.|.+|-..+. .-.+.||+.|.+.+ .|...+.. ||... |+|+ ....++...+++..+..
T Consensus 159 YnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 159 YNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred HHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcC
Confidence 6888865543 45678888776654 45567777 88655 6664 45678999999998854
No 265
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.93 E-value=6.6e-05 Score=70.23 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=32.8
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 278 (449)
|++...-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 66777779999999999999999988654 56777777754
No 266
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.93 E-value=3.6e-05 Score=74.60 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=60.6
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-----cEEE--EecccccCh
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-----DIYD--LDLSAVQSN 282 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----~~~~--l~~s~~~~~ 282 (449)
.|.|++-+++.|...+..++.++.- ..|-.+=|||+|||||+..++.||+.+-. +++. +.....-.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 5789999999999999999987641 11223448999999999999999998822 1111 111111111
Q ss_pred -------HHHHHHHH---cCCCCceEEeeccchhh
Q 013128 283 -------SELRFLLL---TMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 283 -------~~l~~~~~---~~~~~~Il~iDeiD~l~ 307 (449)
.+|...+. ..-+.+|+++||+|.+-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 22222222 23578999999999984
No 267
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.88 E-value=0.00056 Score=69.94 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC---------------------CCCHHHHHHHHHccCCCHHH
Q 013128 357 EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH---------------------HYLFEQIEELIKEVNVTPAE 415 (449)
Q Consensus 357 ~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~---------------------~~l~~~i~~l~~~~~~tpa~ 415 (449)
..|..|| |.|.-..|.++.++++.-+..+...|.... .....++...++..+=-..|
T Consensus 197 k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltD 274 (431)
T PF10443_consen 197 KPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTD 274 (431)
T ss_pred hhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHH
Confidence 4566777 448889999999999999999998887531 13556777777765533334
Q ss_pred H--HHHHhc-CCCHHHHHHHHHHHHHHH
Q 013128 416 V--AGELMK-STNAEVSLNGLVKFLHAK 440 (449)
Q Consensus 416 i--~~~l~~-~~~~~~al~~l~~~l~~~ 440 (449)
+ --.-++ ..+|+.|++.+++.-...
T Consensus 275 Le~lvrRiksGe~p~~Av~~iI~qsa~e 302 (431)
T PF10443_consen 275 LEFLVRRIKSGESPEEAVEEIISQSASE 302 (431)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4 222233 469999999998765543
No 268
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.86 E-value=0.00013 Score=70.59 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=41.1
Q ss_pred eEEEEEcCC------------CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHH
Q 013128 347 RIIVFTTNH------------KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIK 407 (449)
Q Consensus 347 ~iiI~tTN~------------~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~ 407 (449)
.++|++||+ |..++-.|+. |+ ..|..-+.+.++.++|++.-...++..+.++...++.
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt 387 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT 387 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH
Confidence 377778875 5678888988 88 4566666667788888888777777777665555443
No 269
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.84 E-value=0.00014 Score=74.97 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=76.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe-cccccChHHH---HHHHHcCC--CCceEEeeccchhhhcccccchhhh
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD-LSAVQSNSEL---RFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQ 318 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~-~s~~~~~~~l---~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~ 318 (449)
.++|+||.+||||++++.+...+.-.++.++ +.......++ ...+.... .+..||||||+++-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----------
Confidence 7999999999999999888888865444443 3333333333 22222222 458999999998732
Q ss_pred hccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCC-CccccCCCccceEEEeCCCCHHHHHH------------
Q 013128 319 ATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKL-DPALLRPGRMDMHLHMSYCNTSVFKQ------------ 385 (449)
Q Consensus 319 ~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~l-d~aLlrpgR~d~~i~l~~p~~~~r~~------------ 385 (449)
....+-...|.. ..-++|.++|..-.+ ..+-.=+|| ...+++.+.++.++..
T Consensus 109 ---------W~~~lk~l~d~~-----~~~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~~~~~~~~~~~~ 173 (398)
T COG1373 109 ---------WERALKYLYDRG-----NLDVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKLKGEEIEPSKLE 173 (398)
T ss_pred ---------HHHHHHHHHccc-----cceEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhhcccccchhHHH
Confidence 222233334431 113555555544222 223334679 4789999999999854
Q ss_pred -HHHHHhCcC
Q 013128 386 -LAFNYLGIS 394 (449)
Q Consensus 386 -l~~~~l~~~ 394 (449)
++..|+...
T Consensus 174 ~~f~~Yl~~G 183 (398)
T COG1373 174 LLFEKYLETG 183 (398)
T ss_pred HHHHHHHHhC
Confidence 678888653
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.83 E-value=1.7e-05 Score=71.42 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=30.6
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.+..++|+||||||||++++++|..+++++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3568999999999999999999999999988654
No 271
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.83 E-value=0.00024 Score=72.70 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=40.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
..++++.||||||||+++.+++.+. -..-.......+..+... ..+.......+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~-~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST-RQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH-HHHhhhccCCEEEEEcCCCCc
Confidence 3589999999999999999998872 100011122222211111 344455678999999998753
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.0001 Score=65.32 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=22.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
--+.+.||||+|||+++.-+|+.|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458999999999999999999988
No 273
>PF14516 AAA_35: AAA-like domain
Probab=97.79 E-value=0.0005 Score=69.25 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=80.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC-----hH-------------------------------
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS-----NS------------------------------- 283 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-----~~------------------------------- 283 (449)
+.-+.++||..+||||+...+.+.+ ++..+.+++..+.. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3558899999999999999988777 78888888776532 00
Q ss_pred -H----HHH-HHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC-----CC-eEEEE
Q 013128 284 -E----LRF-LLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG-----EG-RIIVF 351 (449)
Q Consensus 284 -~----l~~-~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~-----~~-~iiI~ 351 (449)
. +.. ++....+|-||+|||||+++... .....|+..+-....... .. +++++
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----------------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~ 174 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----------------QIADDFFGLLRSWYEQRKNNPIWQKLRLILA 174 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc----------------chHHHHHHHHHHHHHhcccCcccceEEEEEe
Confidence 0 001 23334578999999999987411 011223333322111100 11 23333
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
-+..+......-..|--+...|.++..+.++-..|++.|-.
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~ 215 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL 215 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc
Confidence 22222222222245666777899999999999999987743
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=6.8e-05 Score=76.20 Aligned_cols=103 Identities=20% Similarity=0.340 Sum_probs=62.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc----C-CcEEEEecccc----------------------cChHHHHHHHHcCCCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL----K-FDIYDLDLSAV----------------------QSNSELRFLLLTMPSR 295 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l----~-~~~~~l~~s~~----------------------~~~~~l~~~~~~~~~~ 295 (449)
+..++|.||+|+|||+++..||..+ + ..+..+..... .+...+...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568999999999999999999874 3 23443433322 1223455556666778
Q ss_pred ceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccc
Q 013128 296 SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPAL 363 (449)
Q Consensus 296 ~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aL 363 (449)
.+|+||...... ....+...+..+.+.... -+.++|+-+|+..+.++..+
T Consensus 217 DlVLIDTaG~~~-----------------~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 217 HMVLIDTIGMSQ-----------------RDRTVSDQIAMLHGADTP-VQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CEEEEcCCCCCc-----------------ccHHHHHHHHHHhccCCC-CeEEEEecCccChHHHHHHH
Confidence 899999986432 112344555656543221 12345556777777665443
No 275
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.73 E-value=0.00023 Score=75.08 Aligned_cols=163 Identities=17% Similarity=0.254 Sum_probs=101.3
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCC--CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecc-c---c--
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAW--KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLS-A---V-- 279 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~--~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s-~---~-- 279 (449)
|-.+.|.+.+|.-|.-. .+.+-..+..-|.+. --++++.|.||||||.+.++.++.+...+|.---. + +
T Consensus 344 ~PsIyGhe~VK~GilL~---LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLS---LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHH---HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 55678888888887533 333333222222222 23499999999999999999999998888754211 1 1
Q ss_pred --cChHHHHHHHHcC-----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc---------CccccC
Q 013128 280 --QSNSELRFLLLTM-----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID---------GLWSCC 343 (449)
Q Consensus 280 --~~~~~l~~~~~~~-----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~ 343 (449)
..+.+-.....++ ...+|-+|||+|.+-. . -...++..|+ |+..+.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~--------------~----dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV--------------K----DQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh--------------H----hHHHHHHHHHhheehheecceEEee
Confidence 0011111111222 3688999999998732 0 0122445554 332222
Q ss_pred CCCeEEEEEcCCCC-------------CCCccccCCCccceE-EEeCCCCHHHHHHHHHHHhCc
Q 013128 344 GEGRIIVFTTNHKE-------------KLDPALLRPGRMDMH-LHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 344 ~~~~iiI~tTN~~~-------------~ld~aLlrpgR~d~~-i~l~~p~~~~r~~l~~~~l~~ 393 (449)
+-..-|++++|+.. .+++++++ |||.. |-+..|++..=..|.++.+..
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 23335778888752 36889999 99964 456889998888888888765
No 276
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=2.7e-05 Score=70.60 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=29.4
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
-|++.||||+||||+|+.|++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988763
No 277
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.72 E-value=6.1e-05 Score=64.43 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=42.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..|.|++-+++.|.+.+..++..+. -..|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4688999999999999999987652 1112235589999999999999999986
No 278
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.71 E-value=0.00021 Score=73.65 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=68.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC-
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS- 281 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~- 281 (449)
..+..++|.......+.+.++--..+ ...|||.|.+||||..+|++|-+.. +.+++.+||..+-.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 35788999988888888877644432 3579999999999999999999887 57999999998843
Q ss_pred --hHHHH----HHHHc----------CCCCceEEeeccchhh
Q 013128 282 --NSELR----FLLLT----------MPSRSMLVIEDIDCSV 307 (449)
Q Consensus 282 --~~~l~----~~~~~----------~~~~~Il~iDeiD~l~ 307 (449)
+++|. -.|.. ....+-||+|||..+.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP 330 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP 330 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC
Confidence 23332 11221 1357899999998764
No 279
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.70 E-value=0.00013 Score=67.34 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.++-++|.||+|+|||+|++.+.....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356799999999999999999998763
No 280
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.69 E-value=8.3e-05 Score=80.42 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=87.6
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCc---ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe-ccccc-----
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKR---GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD-LSAVQ----- 280 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r---g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~-~s~~~----- 280 (449)
++.|.+++|+.|.-.| +.+......-| .+-| ++||.|.||||||.|.+.+++.+...+|.-- .++-.
T Consensus 287 sIyG~e~VKkAilLqL---fgGv~k~~~~g-~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 287 SIYGHEDVKKAILLQL---FGGVKKNLPDG-TRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccCcHHHHHHHHHHh---cCCCcccCCCC-cccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 5677788887775332 22211000001 1123 4999999999999999999999987777432 11110
Q ss_pred --ChHHHHHHHHcC-----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc---------CccccCC
Q 013128 281 --SNSELRFLLLTM-----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID---------GLWSCCG 344 (449)
Q Consensus 281 --~~~~l~~~~~~~-----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~~ 344 (449)
.+........+. ..++|.+|||+|.+-. ...+.+...|+ |+....+
T Consensus 363 v~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~------------------~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 363 VVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE------------------EDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred EEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh------------------HHHHHHHHHHHhcEeeecccceeeecc
Confidence 000001111122 3689999999998732 11233444444 2222222
Q ss_pred CCeEEEEEcCCCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHH
Q 013128 345 EGRIIVFTTNHKE-------------KLDPALLRPGRMDMHLHM-SYCNTSVFKQLAFN 389 (449)
Q Consensus 345 ~~~iiI~tTN~~~-------------~ld~aLlrpgR~d~~i~l-~~p~~~~r~~l~~~ 389 (449)
-..-|++++|.+. .|+++|++ |||..+-+ ..|+.+.=+.++.+
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~h 481 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEH 481 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHH
Confidence 2335677888764 36789999 99987766 44665443333333
No 281
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.68 E-value=0.0028 Score=58.30 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=93.1
Q ss_pred eEEEEcccCCCCcchHHHHHHHhhccCCCcccchheeccccC----------------------CCCceEEeccCCCeEE
Q 013128 52 LTIVVEEFQGFSINQVFEAANYYLGNKATTTSAQRFRVGKSE----------------------KEKTFEIALDRNEETF 109 (449)
Q Consensus 52 ~ti~i~e~~~~~~n~~y~a~~~YL~t~~~~~~~~rl~~~~~~----------------------~~~~~~~~~~~~~~v~ 109 (449)
.||.|+.. +++|+.+-.+|+.......++++.+.... +...+.+.+..| ...
T Consensus 27 ~sv~I~~~-----D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPSD-----DEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECCC-----CHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 35566653 58999999999988765356776665522 356788999999 667
Q ss_pred eeecCeeeEEEEEEeecCCCCccCCCCCCCCcccCCCcceEEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCceeEEee
Q 013128 110 DVFKDVTLKWKLVYTQVPSSMEYRNPNLGDYNASLRSEVRHYELSFHKKHKDVVLNLYLPHVLEKAKAIKEESKVVKLHT 189 (449)
Q Consensus 110 D~f~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~yl~~v~~~~~~~~~~~~~~~~~~ 189 (449)
..|+| +|..+.++.+ +...+ .....+.+.++|++-.++.. ++.++|.+..+... +.....+.+|.
T Consensus 101 F~y~G---~~~~~~R~~~-~~~~~--------~~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~ 165 (187)
T PF08740_consen 101 FWYKG---RWFWFSRQRE-SNSYN--------SWTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYR 165 (187)
T ss_pred EEECC---EEEEEEEEec-ccccc--------ccCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEe
Confidence 79999 7999988875 33211 01134578999999998754 55555554444332 23334466998
Q ss_pred ecccc--ccccccccCCCCCcccc
Q 013128 190 VMHMR--WDANNIVLKHPMTFKTL 211 (449)
Q Consensus 190 ~~~~~--w~~~~~~~~~p~~f~~l 211 (449)
..+.. |.. +...++..+++|
T Consensus 166 ~~~~~~~W~~--~~~r~~RplsTV 187 (187)
T PF08740_consen 166 ADGSEYRWRR--VASRPKRPLSTV 187 (187)
T ss_pred CCCCCCCCcC--CCCcCCCCCCCC
Confidence 87766 998 777777778775
No 282
>PRK07261 topology modulation protein; Provisional
Probab=97.67 E-value=0.00017 Score=65.55 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=27.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
+++.|+||+||||+++.++..++.+++.+|.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999988776653
No 283
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.66 E-value=0.00021 Score=67.63 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=32.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
|++.+.-++++||||+|||+++..+|.+. +..++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666779999999999999999999755 6777777766
No 284
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.66 E-value=0.00036 Score=65.66 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=30.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|++.+.-++++||||||||+++..+|.++ +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666779999999999999999999776 456666654
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00065 Score=69.62 Aligned_cols=65 Identities=26% Similarity=0.398 Sum_probs=43.1
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcC-------CcEE--EEeccccc--------------------ChHHHHHHHHcC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLK-------FDIY--DLDLSAVQ--------------------SNSELRFLLLTM 292 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~--~l~~s~~~--------------------~~~~l~~~~~~~ 292 (449)
.++.++|+||+|+||||++..+|..+. ..+. .+|+-... ....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356799999999999999999998762 3333 44432221 123344444555
Q ss_pred CCCceEEeeccchh
Q 013128 293 PSRSMLVIEDIDCS 306 (449)
Q Consensus 293 ~~~~Il~iDeiD~l 306 (449)
....+|+||.+..+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 56778999988765
No 286
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.64 E-value=0.00053 Score=68.06 Aligned_cols=128 Identities=17% Similarity=0.237 Sum_probs=88.0
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+.+.+...|+.+++.....+.+.+....+.- ....+|+.|..||||-.+|+|.-... +.+|+.++|
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNC 263 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNC 263 (511)
T ss_pred cccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeec
Confidence 3455667899999888777777665544332 12468999999999999999876655 579999999
Q ss_pred ccccChHHHHHHHHc------------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHh-cCccccC
Q 013128 277 SAVQSNSELRFLLLT------------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFI-DGLWSCC 343 (449)
Q Consensus 277 s~~~~~~~l~~~~~~------------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l-dg~~~~~ 343 (449)
..+-.+..-..+|-. ..+..-+++|||..+.+ .....||.++ ||.....
T Consensus 264 A~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp------------------~lQaKLLRFL~DGtFRRV 325 (511)
T COG3283 264 ASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP------------------RLQAKLLRFLNDGTFRRV 325 (511)
T ss_pred CCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH------------------HHHHHHHHHhcCCceeec
Confidence 998654333333333 34567889999987643 2334466666 5665555
Q ss_pred CCC------eEEEEEcCCC
Q 013128 344 GEG------RIIVFTTNHK 356 (449)
Q Consensus 344 ~~~------~iiI~tTN~~ 356 (449)
|++ +-||+||..+
T Consensus 326 Gee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 326 GEDHEVHVDVRVICATQVN 344 (511)
T ss_pred CCcceEEEEEEEEeccccc
Confidence 543 5688888764
No 287
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.64 E-value=0.00025 Score=70.74 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=45.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc---------------------ChH---HHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ---------------------SNS---ELRFLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~---------------------~~~---~l~~~~~~ 291 (449)
|.+..+.++++||||||||+|+..++... +..+..++..... +.. .+...+.+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56667779999999999999988766554 4455555432210 111 11122233
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+||||-+.++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 45788999999998865
No 288
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.63 E-value=0.00033 Score=63.94 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=23.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+|++||||||||+++..++.+. |..++.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7899999999999999887765 45555544
No 289
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.63 E-value=0.00028 Score=65.74 Aligned_cols=110 Identities=20% Similarity=0.312 Sum_probs=63.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhh
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQ 318 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~ 318 (449)
|......++|.|+.|+|||++++.|+.+. +.-+.....+.. ....+...-|+.|||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd----~~~~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKD----FLEQLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcH----HHHHHHHhHheeHHHHhhcch----------
Confidence 44444568899999999999999997762 211122222222 223344568899999998642
Q ss_pred hccchhhHHHHHHHHHHhc----Ccc-------ccCCCCeEEEEEcCCCCCC-CccccCCCccceEEEeCC
Q 013128 319 ATNQEENKVTLSGLLNFID----GLW-------SCCGEGRIIVFTTNHKEKL-DPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 319 ~~~~~~~~~~ls~LL~~ld----g~~-------~~~~~~~iiI~tTN~~~~l-d~aLlrpgR~d~~i~l~~ 377 (449)
.....|-+++. ... ...+...++|+|||..+-| |+.=-| || ..|+++.
T Consensus 110 --------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 --------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 11122333322 111 1112335788999998755 555667 77 4455554
No 290
>PRK13947 shikimate kinase; Provisional
Probab=97.62 E-value=5.3e-05 Score=68.43 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=29.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
.++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999988763
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.00043 Score=66.05 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=29.8
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|++.+..++++||||||||+++.+++... +..++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67777889999999999999999997653 555555543
No 292
>PRK03839 putative kinase; Provisional
Probab=97.61 E-value=5e-05 Score=69.37 Aligned_cols=30 Identities=30% Similarity=0.626 Sum_probs=27.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987764
No 293
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.61 E-value=3.8e-05 Score=69.81 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=36.1
Q ss_pred ccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc---EEEEecccc
Q 013128 211 LALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD---IYDLDLSAV 279 (449)
Q Consensus 211 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~ 279 (449)
++|-++..+++...+. ..... .++.++|+||+|+|||+++++++..+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~---------~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSG---------SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHcC---------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4566666666666554 22222 25789999999999999999998888443 677766655
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.60 E-value=6e-05 Score=66.58 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=28.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988765
No 295
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.59 E-value=0.00021 Score=81.11 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=90.3
Q ss_pred CCCcceEEeCCCCCCHHH-HHHHHHHHcCCcEEEEecccccChH-HHHHHHHcC------------C----CCceEEeec
Q 013128 241 AWKRGYLLYGPPGTGKSS-LIAAMANQLKFDIYDLDLSAVQSNS-ELRFLLLTM------------P----SRSMLVIED 302 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~-la~aiA~~l~~~~~~l~~s~~~~~~-~l~~~~~~~------------~----~~~Il~iDe 302 (449)
...|+|+++||||+|||+ +.-++-+++-++++.++.+.-.... .+..+-..+ + +..||+.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 346899999999999998 4778899999999999988776444 444333332 1 235899999
Q ss_pred cchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC------CCeEEEEEcCCCCCC-----CccccCCCccce
Q 013128 303 IDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG------EGRIIVFTTNHKEKL-----DPALLRPGRMDM 371 (449)
Q Consensus 303 iD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------~~~iiI~tTN~~~~l-----d~aLlrpgR~d~ 371 (449)
|. +.....-.. .....+-.-|-.-.|+|++.. .++++++++|.+... ...++| | .+
T Consensus 1572 In-Lp~~~~y~~---------~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~-~v 1638 (3164)
T COG5245 1572 IN-LPYGFEYYP---------PTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K-PV 1638 (3164)
T ss_pred cC-CccccccCC---------CceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C-ce
Confidence 98 322111111 111111111122246776422 346788899987543 244554 2 46
Q ss_pred EEEeCCCCHHHHHHHHHHHhCc
Q 013128 372 HLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 372 ~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
.+++.||.-....+|...+|..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHH
Confidence 7889999999999998877753
No 296
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.59 E-value=0.0003 Score=70.22 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc---------------------ChHHH---HHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ---------------------SNSEL---RFLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~---------------------~~~~l---~~~~~~ 291 (449)
|++..+-+++|||||||||+|+..+|... +.....++...-. +..++ ...+.+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999877554 5556666542210 11111 122333
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 45788999999998875
No 297
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.59 E-value=0.00091 Score=62.20 Aligned_cols=64 Identities=25% Similarity=0.477 Sum_probs=40.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh----------HHHHHHHHc-----------CCCCceEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN----------SELRFLLLT-----------MPSRSMLV 299 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~----------~~l~~~~~~-----------~~~~~Il~ 299 (449)
+..+|.||||||||++++.++..+ +..++.+..+.-... ..+..++.. .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 568889999999999999988776 567777765543211 111222221 12347999
Q ss_pred eeccchhh
Q 013128 300 IEDIDCSV 307 (449)
Q Consensus 300 iDeiD~l~ 307 (449)
|||+..+.
T Consensus 99 VDEasmv~ 106 (196)
T PF13604_consen 99 VDEASMVD 106 (196)
T ss_dssp ESSGGG-B
T ss_pred EecccccC
Confidence 99998763
No 298
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.59 E-value=0.0004 Score=65.62 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=30.4
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---C------CcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---K------FDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~------~~~~~l~~s~ 278 (449)
|++...-+.|+||||+|||+++..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56666779999999999999999998764 2 4556665543
No 299
>PRK00625 shikimate kinase; Provisional
Probab=97.57 E-value=6.4e-05 Score=68.51 Aligned_cols=31 Identities=35% Similarity=0.545 Sum_probs=29.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999999876
No 300
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.56 E-value=0.00066 Score=61.67 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=47.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChH-----------------------HHHHHHHc-CCCCceEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNS-----------------------ELRFLLLT-MPSRSMLVI 300 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~-----------------------~l~~~~~~-~~~~~Il~i 300 (449)
-+|+.||||+|||++|..++..++.+++.+......... ++..++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 479999999999999999999998887777665543321 23344444 345678999
Q ss_pred eccchhhh
Q 013128 301 EDIDCSVK 308 (449)
Q Consensus 301 DeiD~l~~ 308 (449)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 98887753
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=4.3e-05 Score=66.66 Aligned_cols=28 Identities=39% Similarity=0.706 Sum_probs=24.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
+++.||||+||||+|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999944443
No 302
>PRK04040 adenylate kinase; Provisional
Probab=97.55 E-value=0.00045 Score=63.84 Aligned_cols=29 Identities=24% Similarity=0.566 Sum_probs=25.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc--CCcEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL--KFDIY 272 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l--~~~~~ 272 (449)
.-++++|+||||||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468999999999999999999999 55553
No 303
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.55 E-value=0.00029 Score=69.95 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=59.9
Q ss_pred CCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE-EEEecccccC--hHHHHHH----------HHc-CCCCceEEeeccch
Q 013128 240 RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI-YDLDLSAVQS--NSELRFL----------LLT-MPSRSMLVIEDIDC 305 (449)
Q Consensus 240 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-~~l~~s~~~~--~~~l~~~----------~~~-~~~~~Il~iDeiD~ 305 (449)
...++|++||||-|+|||.|.-.....+...- ..+-...+.. -.++..+ -.+ ..+--||+|||+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeee
Confidence 34678999999999999999999888774422 1111111100 0111111 111 12456999999985
Q ss_pred hhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 306 SVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 306 l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
- +-.....++.|++.+= ..++++|+|+|.+
T Consensus 142 t---------------DI~DAMiL~rL~~~Lf------~~GV~lvaTSN~~ 171 (367)
T COG1485 142 T---------------DIADAMILGRLLEALF------ARGVVLVATSNTA 171 (367)
T ss_pred c---------------ChHHHHHHHHHHHHHH------HCCcEEEEeCCCC
Confidence 2 2334567888888773 2578999999974
No 304
>PRK13949 shikimate kinase; Provisional
Probab=97.55 E-value=6.9e-05 Score=68.03 Aligned_cols=31 Identities=39% Similarity=0.561 Sum_probs=29.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.++|.||||+|||++++.+|+.+++++++.|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 305
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.54 E-value=0.00047 Score=65.58 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.2
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 278 (449)
|++...-+.|+||||||||+++..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56666679999999999999999998553 24666666543
No 306
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.51 E-value=0.0054 Score=69.83 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=84.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh--------------------------------H----HHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN--------------------------------S----ELR 286 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~--------------------------------~----~l~ 286 (449)
.+-+++.||+|.|||+++...+...+ ++.-+++..-.++ . -+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35699999999999999999888776 5555544321100 0 011
Q ss_pred HHH---HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCc-c
Q 013128 287 FLL---LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDP-A 362 (449)
Q Consensus 287 ~~~---~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~-a 362 (449)
.++ .....|.+|||||++.+-. ......+..|+..+ +..+.+|.|+.....++- .
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~--------------~~~~~~l~~l~~~~-------~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN--------------PEIHEAMRFFLRHQ-------PENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC--------------hHHHHHHHHHHHhC-------CCCeEEEEEeCCCCCCchHh
Confidence 112 2235789999999998631 11122333444432 334455556654222221 1
Q ss_pred ccCCCccceEEEeC----CCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHccCCCHHHHHHHH
Q 013128 363 LLRPGRMDMHLHMS----YCNTSVFKQLAFNYLGISHHYLFEQIEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 363 LlrpgR~d~~i~l~----~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l 420 (449)
+.-.|. .+++. ..+.++-..++...++.. .-.++++.+.+.++=-|.-+....
T Consensus 170 l~~~~~---~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 170 LRVRDQ---LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred HHhcCc---ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHHH
Confidence 111112 23444 678888888888766642 234566777776666665554433
No 307
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.49 E-value=8.1e-05 Score=67.19 Aligned_cols=32 Identities=34% Similarity=0.465 Sum_probs=30.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.+.|.|++|+||||+.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56899999999999999999999999999887
No 308
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.49 E-value=0.0012 Score=60.04 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh-----------------------HHHHHHHHcCCCCceEEeec
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN-----------------------SELRFLLLTMPSRSMLVIED 302 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~-----------------------~~l~~~~~~~~~~~Il~iDe 302 (449)
+|+.||||+|||++|..++...+.+.+++......+. .++...+...+.+.+++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999987777877765543221 23334444444567899999
Q ss_pred cchhhh
Q 013128 303 IDCSVK 308 (449)
Q Consensus 303 iD~l~~ 308 (449)
+..+..
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887654
No 309
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.47 E-value=0.00074 Score=62.98 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=41.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-----CCcEE-------------EEec-cccc--------ChHHHHHHHHcCC--
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-----KFDIY-------------DLDL-SAVQ--------SNSELRFLLLTMP-- 293 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~-------------~l~~-s~~~--------~~~~l~~~~~~~~-- 293 (449)
.+.++|.||.|+|||+++++++... |.++- .+.. ..+. .-.++..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 4678999999999999999999543 43320 1100 0000 0134556677777
Q ss_pred CCceEEeeccch
Q 013128 294 SRSMLVIEDIDC 305 (449)
Q Consensus 294 ~~~Il~iDeiD~ 305 (449)
.|.++++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999754
No 310
>PRK13948 shikimate kinase; Provisional
Probab=97.47 E-value=0.00013 Score=67.03 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.++.++|.|++|||||++++.+|+.+++++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3578999999999999999999999999999887
No 311
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.00063 Score=64.12 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=58.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHH-----HcCCcE---------EEEecccccC--------------hHHHHHHHHcCCCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMAN-----QLKFDI---------YDLDLSAVQS--------------NSELRFLLLTMPSR 295 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~-----~l~~~~---------~~l~~s~~~~--------------~~~l~~~~~~~~~~ 295 (449)
+.++|.||.|+|||++.+.++. ..|..+ ++-....+.. -..+...+.....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 233221 1111111111 12334445556789
Q ss_pred ceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccc
Q 013128 296 SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPAL 363 (449)
Q Consensus 296 ~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aL 363 (449)
++++|||+..-.. .......+..++..+-. .......+|++|...+.+....
T Consensus 110 slvllDE~~~gtd-------------~~~~~~~~~ail~~l~~---~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 110 SLVLIDEFGKGTD-------------TEDGAGLLIATIEHLLK---RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred cEEEeccccCCCC-------------HHHHHHHHHHHHHHHHh---cCCCCcEEEEEcChHHHHHhhh
Confidence 9999999976431 11122333334444411 1012347888888876554443
No 312
>PRK05973 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.00075 Score=64.53 Aligned_cols=37 Identities=22% Similarity=0.008 Sum_probs=27.8
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
|.+++.-+|+.|+||+|||+++..+|.+. |.+++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 55556679999999999999998877655 55554443
No 313
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.43 E-value=0.00012 Score=66.74 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=25.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+++.||||+|||++++.+|..+++..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998755543
No 314
>PTZ00202 tuzin; Provisional
Probab=97.43 E-value=0.014 Score=60.30 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecc
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLS 277 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s 277 (449)
|....+.+|-+.....+...+.. .....++-+.|.||+|||||++++.++..++...+.+|+.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 44566788888887777666542 1122245788999999999999999999999888888877
No 315
>PRK06217 hypothetical protein; Validated
Probab=97.43 E-value=0.00014 Score=66.84 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=28.4
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
-|+|.|+||+||||++++++..++.+++++|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999887765
No 316
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.41 E-value=0.00013 Score=64.30 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=25.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
++|.||||+|||++++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 317
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.41 E-value=0.00027 Score=70.54 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 213 LDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 213 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..++.++.+.+.++..+.... -..++..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455666666666666554332 1334567999999999999999999999999999665
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.41 E-value=0.0015 Score=68.06 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccc
Q 013128 216 ELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAV 279 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (449)
.+.+.+.+.+...+.......... ..|..++++||+|+|||+++..+|..+ +..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 445566666666555332111111 236679999999999999999999888 455665655443
No 319
>PRK14532 adenylate kinase; Provisional
Probab=97.40 E-value=0.00014 Score=66.84 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.++|.||||+||||+++.+|..+++..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 388999999999999999999999877654
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.40 E-value=0.00088 Score=65.93 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=28.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc----C-CcEEEEeccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL----K-FDIYDLDLSA 278 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l----~-~~~~~l~~s~ 278 (449)
++.++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4468899999999999999999877 3 5566565544
No 321
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.39 E-value=0.0013 Score=66.55 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
-.||.||||||||+|++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999999873
No 322
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.39 E-value=0.00048 Score=68.88 Aligned_cols=65 Identities=31% Similarity=0.420 Sum_probs=50.9
Q ss_pred cc-cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEecccc
Q 013128 208 FK-TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDLSAV 279 (449)
Q Consensus 208 f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~ 279 (449)
|+ ++.|.++...++++.+.....+-+ ..++-+||.||+|+|||++++.+.+-+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~-------~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLE-------ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccC-------ccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 899999999999988776655332 225679999999999999999999998 467777754444
No 323
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00015 Score=63.44 Aligned_cols=42 Identities=29% Similarity=0.525 Sum_probs=33.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELR 286 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~ 286 (449)
..++|+.|-||||||+++..+|..+++..+.+ +++..+.++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn~l~ 48 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNLY 48 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhhcch
Confidence 45799999999999999999999999887655 5555444443
No 324
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.39 E-value=0.00078 Score=67.19 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCce
Q 013128 218 KREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSM 297 (449)
Q Consensus 218 k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~I 297 (449)
.+.|.+.|+.... ++|.+|.+|+-||-.|||||+|+|+-+.++-....+++.. ..|.+-+.-+-..-.
T Consensus 138 ~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfm 205 (417)
T PF06431_consen 138 DDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFM 205 (417)
T ss_dssp HHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SE
T ss_pred HHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEE
Confidence 3455555655554 3466889999999999999999999999988777776643 456666666677888
Q ss_pred EEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC-----CCe-----EEEEEcCCCCCCCccccCCC
Q 013128 298 LVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG-----EGR-----IIVFTTNHKEKLDPALLRPG 367 (449)
Q Consensus 298 l~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~-----~~~-----iiI~tTN~~~~ld~aLlrpg 367 (449)
+++||+---... ++. -..+..-.-|..|-.++||.-.-+- ..+ --|.|+|+. .|+..+.-
T Consensus 206 VvFEDVKGq~~~-~~~------Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNeY-~iP~Tv~v-- 275 (417)
T PF06431_consen 206 VVFEDVKGQPSD-NKD------LPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNEY-KIPQTVKV-- 275 (417)
T ss_dssp EEEEEE--SSTT-TTT----------SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--
T ss_pred EEEEecCCCcCC-CCC------CCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeeccc-cCCcceee--
Confidence 999998532110 000 0112223345667778887532100 011 246788875 47888887
Q ss_pred ccceEEEeCC
Q 013128 368 RMDMHLHMSY 377 (449)
Q Consensus 368 R~d~~i~l~~ 377 (449)
||...+.|..
T Consensus 276 Rf~~~~~F~~ 285 (417)
T PF06431_consen 276 RFCKVLDFRP 285 (417)
T ss_dssp TEEEEEE---
T ss_pred eeEeeEeccc
Confidence 9988888764
No 325
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.37 E-value=0.00016 Score=64.89 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=26.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
|+|.||||||||++++.+++.++..++ +...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999986654 44444
No 326
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.37 E-value=0.001 Score=63.48 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=26.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
|++....+++.||||||||+++..++..+ +...+.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45666779999999999999975554433 44555444
No 327
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.36 E-value=0.00017 Score=63.03 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=28.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.+.|+||||||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999998877
No 328
>PRK14531 adenylate kinase; Provisional
Probab=97.36 E-value=0.00019 Score=65.95 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=27.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+-+++.||||+|||++++.+|..+|+..+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999876654
No 329
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.35 E-value=0.00061 Score=66.43 Aligned_cols=91 Identities=22% Similarity=0.425 Sum_probs=56.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC---cEEEEec-ccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF---DIYDLDL-SAV 279 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~~l~~-s~~ 279 (449)
.+.+++++...+...+.+.+.+....+. ...+++.||+|+|||+++++++.++.. .++.+.- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4557889988777766666666544332 357999999999999999999999843 3444321 111
Q ss_pred -------------cChHHHHHHHHcC--CCCceEEeeccch
Q 013128 280 -------------QSNSELRFLLLTM--PSRSMLVIEDIDC 305 (449)
Q Consensus 280 -------------~~~~~l~~~~~~~--~~~~Il~iDeiD~ 305 (449)
.....+..++... ..|.+|++.||..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1122333333332 4789999999964
No 330
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.35 E-value=0.0004 Score=75.40 Aligned_cols=52 Identities=27% Similarity=0.322 Sum_probs=42.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
-+|..|++++|.++.++.+...+.. ++.++|+||||||||+++++++..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3578899999999888876554431 247999999999999999999999863
No 331
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.35 E-value=0.00018 Score=66.17 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
++|.||||+|||++++.||..+++..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998876654
No 332
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.34 E-value=0.00021 Score=65.08 Aligned_cols=34 Identities=44% Similarity=0.732 Sum_probs=30.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
+..++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999988764
No 333
>PRK13946 shikimate kinase; Provisional
Probab=97.34 E-value=0.00018 Score=66.12 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=30.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
++.|+|.|+||||||++++.+|+.+|+++++.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999999877
No 334
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0046 Score=58.82 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=92.2
Q ss_pred CcceEEeCCCC-CCHHHHHHHHHHHc---------CCcEEEEeccc-------ccChHHHHHHHH---cCC---CCceEE
Q 013128 243 KRGYLLYGPPG-TGKSSLIAAMANQL---------KFDIYDLDLSA-------VQSNSELRFLLL---TMP---SRSMLV 299 (449)
Q Consensus 243 ~rg~LL~GPpG-tGKT~la~aiA~~l---------~~~~~~l~~s~-------~~~~~~l~~~~~---~~~---~~~Il~ 299 (449)
...||+.|..+ +||.-++.-++..+ +.+++.+.... .-.-.+++.+.. ..+ ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46799999998 99999988887776 34677665432 123344444333 222 456999
Q ss_pred eeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCC
Q 013128 300 IEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCN 379 (449)
Q Consensus 300 iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~ 379 (449)
|+++|.+.. ...+.||..++.. +...++|.+|..++.|.|.+++ |+ ..+.++.|.
T Consensus 95 I~~ae~mt~------------------~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~ 149 (263)
T PRK06581 95 IYSAELMNL------------------NAANSCLKILEDA----PKNSYIFLITSRAASIISTIRS--RC-FKINVRSSI 149 (263)
T ss_pred EechHHhCH------------------HHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCC
Confidence 999999853 3557799999863 5678888899999999999998 77 668899999
Q ss_pred HHHHHHHHHHHhCc
Q 013128 380 TSVFKQLAFNYLGI 393 (449)
Q Consensus 380 ~~~r~~l~~~~l~~ 393 (449)
...-.+++..++..
T Consensus 150 ~~~~~e~~~~~~~p 163 (263)
T PRK06581 150 LHAYNELYSQFIQP 163 (263)
T ss_pred HHHHHHHHHHhccc
Confidence 87777777766653
No 335
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.31 E-value=0.0013 Score=66.99 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcC
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.||.||||||||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 88999999999999999999874
No 336
>PRK08233 hypothetical protein; Provisional
Probab=97.31 E-value=0.0033 Score=57.04 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=25.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC-CcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK-FDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~-~~~~~l~~ 276 (449)
.-+.+.|+||+||||+++.++..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3467889999999999999999985 44444443
No 337
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.31 E-value=0.0002 Score=67.15 Aligned_cols=22 Identities=50% Similarity=0.908 Sum_probs=18.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l 267 (449)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998888777776
No 338
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0015 Score=72.64 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=93.9
Q ss_pred cccccCC-HHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEec
Q 013128 208 FKTLALD-SELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLDL 276 (449)
Q Consensus 208 f~~l~g~-~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~ 276 (449)
++.++|. ++..+.+++.|.. .-+++-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5777776 5555666665531 114788999999999999999999988 345677777
Q ss_pred ccccC--------hHHHHHHHHc---CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCC
Q 013128 277 SAVQS--------NSELRFLLLT---MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGE 345 (449)
Q Consensus 277 s~~~~--------~~~l~~~~~~---~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 345 (449)
..+.. +..+..+... ...+.||+|||++.+.+..... ...-...+|..+-+ .+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~-----------~~~d~~nlLkp~L~-----rg 315 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY-----------GAIDAANLLKPLLA-----RG 315 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcc-----------hHHHHHHhhHHHHh-----cC
Confidence 65532 2334444443 4577899999999997633221 01222333333321 13
Q ss_pred CeEEEEEcCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHH
Q 013128 346 GRIIVFTTNHK-----EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAF 388 (449)
Q Consensus 346 ~~iiI~tTN~~-----~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~ 388 (449)
+.-+|+||..- -.=||+|-| ||+. +.++.|+.+....++.
T Consensus 316 ~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 316 GLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILP 360 (898)
T ss_pred CeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhh
Confidence 36677655432 124899999 9975 5688888765444443
No 339
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.28 E-value=0.00071 Score=62.12 Aligned_cols=25 Identities=36% Similarity=0.777 Sum_probs=22.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
++-++|.||+|+||+++++.|+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999999987
No 340
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.27 E-value=0.0019 Score=56.13 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-++|.|+.|+|||++++++++.++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999999975
No 341
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.0022 Score=61.07 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
-+-|.||+|||||||.+.+|....
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999999883
No 342
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.26 E-value=0.0017 Score=66.41 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=45.9
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc--------------------ChHHHHHHHH--cCC
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ--------------------SNSELRFLLL--TMP 293 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~--------------------~~~~l~~~~~--~~~ 293 (449)
|+.+..-+||+||||+|||+|+..+|..+ +..+++++...-. ....+..++. ...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45556679999999999999999998776 3456666543210 0111111111 224
Q ss_pred CCceEEeeccchhhh
Q 013128 294 SRSMLVIEDIDCSVK 308 (449)
Q Consensus 294 ~~~Il~iDeiD~l~~ 308 (449)
++.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 789999999998753
No 343
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.26 E-value=0.00029 Score=63.62 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..++|.|+||||||++++.+|..+++++++.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35889999999999999999999999998775
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.25 E-value=0.0014 Score=68.65 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=47.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC--------------------hHHHHHHHHc--CC
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS--------------------NSELRFLLLT--MP 293 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~--------------------~~~l~~~~~~--~~ 293 (449)
|++....+||+||||+|||+|+..+|... +..+++++..+-.. ...+..++.. ..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666679999999999999999998876 56667666432110 0111122221 23
Q ss_pred CCceEEeeccchhhh
Q 013128 294 SRSMLVIEDIDCSVK 308 (449)
Q Consensus 294 ~~~Il~iDeiD~l~~ 308 (449)
++.+|+||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 688999999998754
No 345
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.24 E-value=0.00086 Score=60.11 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.++|.||+|||||+|.+++|+..
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 458999999999999999999987
No 346
>PRK14530 adenylate kinase; Provisional
Probab=97.24 E-value=0.00029 Score=66.37 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..++|.||||+||||+++.+|..++++++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3589999999999999999999999877754
No 347
>PRK13808 adenylate kinase; Provisional
Probab=97.24 E-value=0.002 Score=64.45 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
|+|+||||+|||++++.||..+++..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999998765544
No 348
>PRK09354 recA recombinase A; Provisional
Probab=97.24 E-value=0.0012 Score=66.39 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=45.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc---------------------ChH---HHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ---------------------SNS---ELRFLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~---------------------~~~---~l~~~~~~ 291 (449)
|++..+-+++|||||||||+|+..++... +...+.++...-. +.. .+...+.+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 46666779999999999999998776544 4455555433210 011 11122333
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+||||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 45788999999998864
No 349
>PRK06547 hypothetical protein; Provisional
Probab=97.23 E-value=0.00044 Score=62.95 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=28.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-|++.||+|||||++++.+++.++..++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 456889999999999999999999988777554
No 350
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.00028 Score=63.45 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=27.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-++|.|+||+||||+|+.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 356889999999999999999999966666665
No 351
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00028 Score=62.62 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=25.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
+-+.|||||||||+++-+|.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999885
No 352
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.22 E-value=0.0025 Score=61.47 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-++|.||+|||||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345999999999999999999998854
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.19 E-value=0.0013 Score=58.05 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=40.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc-----------EEEEecccccChHHHHH---HHHcCCCCceEEeeccchhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD-----------IYDLDLSAVQSNSELRF---LLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~-----------~~~l~~s~~~~~~~l~~---~~~~~~~~~Il~iDeiD~l~ 307 (449)
+..+.|.||+|+|||+|+++++..+... +..+. ++ +..+.++ ...-..+|.++++||-..-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~l-S~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--QL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--cC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 4568899999999999999999987321 11111 12 2222222 22234689999999987654
No 354
>PLN02674 adenylate kinase
Probab=97.19 E-value=0.00077 Score=64.73 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..++|.||||+||+|+++.||..+++..+..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 4599999999999999999999998765543
No 355
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.18 E-value=0.0003 Score=63.99 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=28.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
++-++|.||||+||||++++++..++..++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 3568999999999999999999998877665443
No 356
>PRK13764 ATPase; Provisional
Probab=97.18 E-value=0.0011 Score=71.38 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=40.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEe------cc----ccc----ChHHHHHHHHcCCCCceEEeeccch
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLD------LS----AVQ----SNSELRFLLLTMPSRSMLVIEDIDC 305 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~------~s----~~~----~~~~l~~~~~~~~~~~Il~iDeiD~ 305 (449)
..++|+.||||+||||+++|+++++. ..+..+. +. .+. +...+...+ -...|-+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~l-LR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADIL-LLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHH-HhhCCCEEEECCCCC
Confidence 46899999999999999999999985 3332331 11 110 011122222 235799999999864
No 357
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.17 E-value=0.0025 Score=65.17 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-++|.||||||||++++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999864
No 358
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.0063 Score=63.34 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=40.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEeccccc----------------------ChHHHHHHHHcCCCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSAVQ----------------------SNSELRFLLLTMPSR 295 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~----------------------~~~~l~~~~~~~~~~ 295 (449)
++.++|.||+|+||||++..+|..+ +..+..+++.... +..++...+......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4568899999999999999998765 3455555554321 122333444444556
Q ss_pred ceEEeeccch
Q 013128 296 SMLVIEDIDC 305 (449)
Q Consensus 296 ~Il~iDeiD~ 305 (449)
-+|+||..-.
T Consensus 301 DlVlIDt~G~ 310 (424)
T PRK05703 301 DVILIDTAGR 310 (424)
T ss_pred CEEEEeCCCC
Confidence 7888887643
No 359
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.16 E-value=0.0023 Score=59.63 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=40.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH-----cCCc--------------EEEEecccc-c--------ChHHHHHHHHcCCCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ-----LKFD--------------IYDLDLSAV-Q--------SNSELRFLLLTMPSR 295 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~-----l~~~--------------~~~l~~s~~-~--------~~~~l~~~~~~~~~~ 295 (449)
.-++|.||.|+|||++.++++.- .|.. +..+...+. . ....+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 46999999999999999999932 2321 111111111 0 013344555566789
Q ss_pred ceEEeeccchhh
Q 013128 296 SMLVIEDIDCSV 307 (449)
Q Consensus 296 ~Il~iDeiD~l~ 307 (449)
.++++||.-.-.
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999997643
No 360
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.16 E-value=0.0004 Score=63.45 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=26.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.-+++.||||+||||+++.+|..+|+..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3588999999999999999999998765543
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.0015 Score=58.09 Aligned_cols=98 Identities=23% Similarity=0.325 Sum_probs=55.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc--EEEEecccc-----------------cChHHHH---HHHHcCCCCceEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD--IYDLDLSAV-----------------QSNSELR---FLLLTMPSRSMLVI 300 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~s~~-----------------~~~~~l~---~~~~~~~~~~Il~i 300 (449)
...+.|.||.|+|||+|+++++..+... -+.++...+ .+..+.+ -...-..+|.++++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4568999999999999999999987432 112221111 1111111 12222357999999
Q ss_pred eccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCC
Q 013128 301 EDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLD 360 (449)
Q Consensus 301 DeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld 360 (449)
||...-++ ......+..++..+ .. .+..+|++|++.+.+.
T Consensus 105 DEp~~~lD--------------~~~~~~l~~~l~~~---~~---~~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGLD--------------PASRERLLELLREL---AE---EGRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCCC--------------HHHHHHHHHHHHHH---HH---CCCEEEEEeCCHHHHH
Confidence 99886543 12223333444433 11 1356778887765543
No 362
>PRK02496 adk adenylate kinase; Provisional
Probab=97.14 E-value=0.00038 Score=63.80 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=26.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+++.||||+|||++++.+|..+++..+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999877654
No 363
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.14 E-value=0.0017 Score=58.48 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+..+.|.||.|+|||+|++.|+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45688999999999999999998873
No 364
>PF13245 AAA_19: Part of AAA domain
Probab=97.13 E-value=0.00069 Score=53.02 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=21.2
Q ss_pred ceEEeCCCCCCHH-HHHHHHHHHc------CCcEEEEecc
Q 013128 245 GYLLYGPPGTGKS-SLIAAMANQL------KFDIYDLDLS 277 (449)
Q Consensus 245 g~LL~GPpGtGKT-~la~aiA~~l------~~~~~~l~~s 277 (449)
-+++.|||||||| ++++.++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3556999999999 5555555555 3445555443
No 365
>PRK14528 adenylate kinase; Provisional
Probab=97.13 E-value=0.00043 Score=63.76 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=26.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.+++.||||+|||++++.+|..++++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999877654
No 366
>PLN02199 shikimate kinase
Probab=97.12 E-value=0.00095 Score=65.48 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=31.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
++.++|.|++|+|||++++.+|+.+++++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 468999999999999999999999999999876
No 367
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.015 Score=55.58 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=76.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC---cEEEEeccc---------------ccChHHHH-----------HHHHcC-
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF---DIYDLDLSA---------------VQSNSELR-----------FLLLTM- 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~~l~~s~---------------~~~~~~l~-----------~~~~~~- 292 (449)
+-.+.+.||+|||||+++..+...+.. +++.+.... +.....+. ......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 446899999999999999999988743 222221100 00011111 111111
Q ss_pred ----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCc
Q 013128 293 ----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGR 368 (449)
Q Consensus 293 ----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR 368 (449)
..+++|+|||+-.- ......+..+++. | ..-.+-+|+.+...-.|||.++. =
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~--n 148 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRS--N 148 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhh--c
Confidence 23789999997421 0112234455541 1 12346788888888999999866 6
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 369 MDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 369 ~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
++..+-+. -+....+.|++++...
T Consensus 149 ~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 149 IDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred ceEEEEec-CcHHHHHHHHHhcccc
Confidence 77777776 5778888888877643
No 368
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.10 E-value=0.00055 Score=69.74 Aligned_cols=98 Identities=24% Similarity=0.417 Sum_probs=62.9
Q ss_pred cceEEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCceeEEee---------------e---ccccccccccccCCC---
Q 013128 147 EVRHYELSFHKKHKDVVLNLYLPHVLEKAKAIKEESKVVKLHT---------------V---MHMRWDANNIVLKHP--- 205 (449)
Q Consensus 147 ~~~~~~l~~~~~~~~~v~~~yl~~v~~~~~~~~~~~~~~~~~~---------------~---~~~~w~~~~~~~~~p--- 205 (449)
+.+...|+=..- .+.-++.+-.++++.|+... ...+.+-. . -...|.- .--+|
T Consensus 170 ~~k~v~l~d~pl-~~~ele~ia~eIi~~a~~~~--~sfIEi~r~GatVvQlrn~RIvIarPPfSd~~EI---TavRPvvk 243 (604)
T COG1855 170 EWKLVRLSDKPL-TREELEEIAREIIERAKRDP--DSFIEIDRPGATVVQLRNYRIVIARPPFSDRWEI---TAVRPVVK 243 (604)
T ss_pred cEEEEEcCCccC-CHHHHHHHHHHHHHHHhhCc--CceEEEccCCceEEEeccEEEEEecCCCCCceEE---EEEeeeEE
Confidence 455555543332 33457778888888876532 11111110 0 0224543 22233
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.++++..+.+.+++++.+. .+|+|+.||||.||||+|+|+|..+.
T Consensus 244 ~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred echhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 3688889999888888653 36999999999999999999999983
No 369
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00036 Score=62.66 Aligned_cols=29 Identities=24% Similarity=0.638 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+++.|.|||||||+++.++ ++|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 9999888764
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.10 E-value=0.00046 Score=65.79 Aligned_cols=31 Identities=19% Similarity=0.551 Sum_probs=27.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
-++|.||||+||||+++.+|+.++++.+.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3899999999999999999999998777653
No 371
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.09 E-value=0.00053 Score=69.04 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=66.1
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhh
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQ 318 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~ 318 (449)
|+|.++.++|||||+||||+++-++.+.++-.++..-- +.-...+.-...--|-+|||+-...=
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~N------s~ShFWLqPL~d~Ki~llDDAT~~cW---------- 321 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN------SKSHFWLQPLADAKIALLDDATYPCW---------- 321 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGG------TTSCGGGGGGCT-SSEEEEEE-HHHH----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecC------CCCcccccchhcCcEEEEcCCcccHH----------
Confidence 67888999999999999999999999999888776411 11123444455667889999864321
Q ss_pred hccchhhHHHH-HHHHHHhcCccccCC--C-------CeEEEEEcCCCCCCCcc---ccCCCccceEEEeCCC
Q 013128 319 ATNQEENKVTL-SGLLNFIDGLWSCCG--E-------GRIIVFTTNHKEKLDPA---LLRPGRMDMHLHMSYC 378 (449)
Q Consensus 319 ~~~~~~~~~~l-s~LL~~ldg~~~~~~--~-------~~iiI~tTN~~~~ld~a---LlrpgR~d~~i~l~~p 378 (449)
.-+ .-|-|.+||-.-+.. . -.-++.|||.-=.-++. |.+ |+ ..++||.+
T Consensus 322 --------~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri-~~f~F~n~ 383 (432)
T PF00519_consen 322 --------DYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RI-TCFEFPNP 383 (432)
T ss_dssp --------HHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TE-EEEE--S-
T ss_pred --------HHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eE-EEEEcCCc
Confidence 111 224588887421100 0 01466788864333443 345 77 55777654
No 372
>PRK04296 thymidine kinase; Provisional
Probab=97.08 E-value=0.004 Score=57.56 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc---CCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL---KFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l 274 (449)
-++++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999998888876 4555544
No 373
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.08 E-value=0.0026 Score=59.18 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred cceEEeCCCCCCHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMA 264 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA 264 (449)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 374
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.07 E-value=0.00049 Score=64.56 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+++.||||+|||++++.+|..+++..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877654
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.007 Score=61.82 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 215 SELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 215 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+ +..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 455666666666555543211 1224679999999999999999999887 344444444
No 376
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.07 E-value=0.0019 Score=63.07 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.++++.||||+|||++.++++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 57999999999999999999999843
No 377
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.06 E-value=0.0043 Score=62.32 Aligned_cols=131 Identities=18% Similarity=0.278 Sum_probs=77.7
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh----------------------------HHHHHHHHc--
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN----------------------------SELRFLLLT-- 291 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~----------------------------~~l~~~~~~-- 291 (449)
.|..+.|||-.|||||.+++++-++++.+.+.+++-+..+- ..+..++..
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 35678999999999999999999999888777765443210 111122222
Q ss_pred -C---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCC
Q 013128 292 -M---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPG 367 (449)
Q Consensus 292 -~---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpg 367 (449)
+ .+...|++|.+|.+-+ .....++.|+..-.-+ +...+.|...-++. .+.-+.+-|
T Consensus 109 ~~t~~d~~~~liLDnad~lrD---------------~~a~ll~~l~~L~el~----~~~~i~iils~~~~-e~~y~~n~g 168 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALRD---------------MDAILLQCLFRLYELL----NEPTIVIILSAPSC-EKQYLINTG 168 (438)
T ss_pred HhhccCceEEEEEcCHHhhhc---------------cchHHHHHHHHHHHHh----CCCceEEEEecccc-HHHhhcccC
Confidence 1 2356899999998842 1224455555433322 12233333332211 011222334
Q ss_pred ccc-eEEEeCCCCHHHHHHHHHHHhC
Q 013128 368 RMD-MHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 368 R~d-~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.++ ..++||.++.++.++|+.+--.
T Consensus 169 ~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 169 TLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CCCceEEecCCCCHHHHHHHHhcCCc
Confidence 443 5789999999998888875443
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.06 E-value=0.035 Score=55.38 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=55.1
Q ss_pred CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEE-EEEcC---CCC--CCCccccCCC
Q 013128 294 SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRII-VFTTN---HKE--KLDPALLRPG 367 (449)
Q Consensus 294 ~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ii-I~tTN---~~~--~ld~aLlrpg 367 (449)
-|.++.||++..++....-...+- .......-.....|++.+.|-..-.++.+++ +.+|. .+. .++.+|....
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~-~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~ 234 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDF-KPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKE 234 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCC-ccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhcccc
Confidence 477888999999987432221111 1112223344555667655444332333332 44432 222 4566665311
Q ss_pred c------cc-------------eEEEeCCCCHHHHHHHHHHHhCcC
Q 013128 368 R------MD-------------MHLHMSYCNTSVFKQLAFNYLGIS 394 (449)
Q Consensus 368 R------~d-------------~~i~l~~p~~~~r~~l~~~~l~~~ 394 (449)
- |. ..|+++..+.++.+.+++.|....
T Consensus 235 ~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 235 GFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred CCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 1 11 168899999999999999888653
No 379
>PLN02200 adenylate kinase family protein
Probab=97.05 E-value=0.00064 Score=65.05 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=28.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+.-+++.||||||||++++.+|.++|+.. ++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 34588999999999999999999998754 444443
No 380
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.05 E-value=0.00056 Score=64.43 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=26.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
|+++||||+|||++++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999877764
No 381
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.04 E-value=0.0034 Score=62.82 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=30.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 278 (449)
|++.+.-++++||||||||+++..+|-.. +..+++++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56666779999999999999999998663 23566666543
No 382
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.03 E-value=0.00097 Score=51.02 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=23.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc-CCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL-KFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l-~~~~~~l 274 (449)
+.+.|+||+|||++++++++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 5788999999999999999996 2444444
No 383
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.03 E-value=0.0027 Score=63.17 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEE----EecccccChHHHHHHH
Q 013128 214 DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYD----LDLSAVQSNSELRFLL 289 (449)
Q Consensus 214 ~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~----l~~s~~~~~~~l~~~~ 289 (449)
++++++-+.+.+-..+... ......++|+|+.|+|||+++..+..-+|-.... +.+.++.+. +..+
T Consensus 54 d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~ 123 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGL 123 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---Cchh
Confidence 4455555555554444332 2345679999999999999999999988854422 222222111 1234
Q ss_pred HcCCCCceEEeeccch
Q 013128 290 LTMPSRSMLVIEDIDC 305 (449)
Q Consensus 290 ~~~~~~~Il~iDeiD~ 305 (449)
.......+++.+|++.
T Consensus 124 a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQK 139 (304)
T ss_pred hhhcCCEEEEecCCCC
Confidence 4456778899999874
No 384
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.03 E-value=0.0038 Score=59.22 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=41.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH-Hc----CC---------cEE-----EEecc-cccC--------hHHHHHHHHcCCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN-QL----KF---------DIY-----DLDLS-AVQS--------NSELRFLLLTMPS 294 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~-~l----~~---------~~~-----~l~~s-~~~~--------~~~l~~~~~~~~~ 294 (449)
.+.++|.||.|+|||++.+.++. .+ |. +++ .+... ++.. -.++..++.....
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999988 32 21 111 11111 1111 1345566777889
Q ss_pred CceEEeeccch
Q 013128 295 RSMLVIEDIDC 305 (449)
Q Consensus 295 ~~Il~iDeiD~ 305 (449)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999864
No 385
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.03 E-value=0.0033 Score=62.73 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
|++...-++++||||||||+++..+|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 566667799999999999999988774
No 386
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.02 E-value=0.0025 Score=61.83 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=51.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH------HcCCcEEEEecccccChHHHHHHHHc-----------------CCCCceEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN------QLKFDIYDLDLSAVQSNSELRFLLLT-----------------MPSRSMLV 299 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~------~l~~~~~~l~~s~~~~~~~l~~~~~~-----------------~~~~~Il~ 299 (449)
...+||.||.|.|||.|++-|.. .+.-.++.++|..+..+..+..+|.. .....+||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 45799999999999999998864 34678999999999876665554433 23578999
Q ss_pred eeccchhh
Q 013128 300 IEDIDCSV 307 (449)
Q Consensus 300 iDeiD~l~ 307 (449)
+|||..+.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998764
No 387
>PF13479 AAA_24: AAA domain
Probab=97.02 E-value=0.0031 Score=59.38 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=36.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCc-EEEEeccc--c-----------cChHHHHHHHH----cCCCCceEEeeccch
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFD-IYDLDLSA--V-----------QSNSELRFLLL----TMPSRSMLVIEDIDC 305 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~-~~~l~~s~--~-----------~~~~~l~~~~~----~~~~~~Il~iDeiD~ 305 (449)
-.++||||||+|||+++..+ +-+ +++++.+. + .+-..+...+. ....--.||||-++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 35899999999999999888 222 22333331 1 12233444332 224557999998887
Q ss_pred h
Q 013128 306 S 306 (449)
Q Consensus 306 l 306 (449)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 6
No 388
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0017 Score=60.99 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=41.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC--------cEEEEeccc-ccC---------------------hHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF--------DIYDLDLSA-VQS---------------------NSELRFLLLTMP 293 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~--------~~~~l~~s~-~~~---------------------~~~l~~~~~~~~ 293 (449)
-+.|+.||||||||++.+-+|.-+.. .+..+|-++ +.. ..+-.-...+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 45899999999999999999988733 344444322 110 011112233445
Q ss_pred CCceEEeeccchh
Q 013128 294 SRSMLVIEDIDCS 306 (449)
Q Consensus 294 ~~~Il~iDeiD~l 306 (449)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 7999999999764
No 389
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.99 E-value=0.0038 Score=57.36 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=39.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHH-----cCCcE--------------EEEeccccc---------ChHHHHHHHHcCCCCce
Q 013128 246 YLLYGPPGTGKSSLIAAMANQ-----LKFDI--------------YDLDLSAVQ---------SNSELRFLLLTMPSRSM 297 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~-----l~~~~--------------~~l~~s~~~---------~~~~l~~~~~~~~~~~I 297 (449)
++|.||.|+|||++.++++-. .|..+ ..+...+-. .-.++..++.....|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 689999999999999999832 23211 112211111 01334455666678999
Q ss_pred EEeeccchhh
Q 013128 298 LVIEDIDCSV 307 (449)
Q Consensus 298 l~iDeiD~l~ 307 (449)
+++||...-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999997643
No 390
>PRK14527 adenylate kinase; Provisional
Probab=96.99 E-value=0.00057 Score=63.10 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=27.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+.-+++.||||+|||++++.+|..++...+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 45699999999999999999999998765543
No 391
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.97 E-value=0.0042 Score=60.54 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=52.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEe------
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLD------ 275 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~------ 275 (449)
+.+++++...++..+.+.+.+ ..+ ...+++.||+|+||||+++++..++. ..++.++
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~----~~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLL----EKP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHH----hcC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 346778887777666553332 111 23488999999999999999988874 2344442
Q ss_pred cccc-----cC--hHHHHHHHHc--CCCCceEEeeccch
Q 013128 276 LSAV-----QS--NSELRFLLLT--MPSRSMLVIEDIDC 305 (449)
Q Consensus 276 ~s~~-----~~--~~~l~~~~~~--~~~~~Il~iDeiD~ 305 (449)
...+ .. ...+...+.. ...|.+|+++||..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 1111 00 0112222222 24799999999964
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.97 E-value=0.0005 Score=58.37 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=21.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l 267 (449)
|+|.|+|||||||+++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 393
>PRK04182 cytidylate kinase; Provisional
Probab=96.96 E-value=0.00074 Score=61.14 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=27.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.|+|.|+||||||++++.+|..+++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 378999999999999999999999988763
No 394
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.0027 Score=59.40 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=39.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-----CCcE---------E-----EEeccc-ccC--------hHHHHHHHHcCCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-----KFDI---------Y-----DLDLSA-VQS--------NSELRFLLLTMPS 294 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~---------~-----~l~~s~-~~~--------~~~l~~~~~~~~~ 294 (449)
++-++|.||.|+|||++++.++... |..+ + .+...+ +.. -.++..++....+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 3569999999999999999987333 3221 1 111110 110 1234455555678
Q ss_pred CceEEeeccch
Q 013128 295 RSMLVIEDIDC 305 (449)
Q Consensus 295 ~~Il~iDeiD~ 305 (449)
++++++||+..
T Consensus 109 ~~lvllDE~~~ 119 (204)
T cd03282 109 DSLVLIDELGR 119 (204)
T ss_pred CcEEEeccccC
Confidence 99999999865
No 395
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.95 E-value=0.059 Score=59.37 Aligned_cols=173 Identities=23% Similarity=0.224 Sum_probs=93.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc--CCcEEEEecccccCh------------------------------------HH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL--KFDIYDLDLSAVQSN------------------------------------SE 284 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l--~~~~~~l~~s~~~~~------------------------------------~~ 284 (449)
.|-+||.-|.|.|||+++...+..+ +..+--+++++-.++ .-
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 4679999999999999999998643 444544444332211 00
Q ss_pred HHHHHH---cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCc
Q 013128 285 LRFLLL---TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDP 361 (449)
Q Consensus 285 l~~~~~---~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~ 361 (449)
+..++. ....|.++||||.+.+.. ......+..|++.. ++++.+|+||...-.+.-
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~~--------------~~l~~~l~fLl~~~-------P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLISD--------------PALHEALRFLLKHA-------PENLTLVVTSRSRPQLGL 175 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccCc--------------ccHHHHHHHHHHhC-------CCCeEEEEEeccCCCCcc
Confidence 112222 334699999999998742 33344555566643 567778887765444433
Q ss_pred cccCCCccceEEEeCC----CCHHHHHHHHHHHhCcCCCCC-HHHHHHHHHccC--CCHHHHHHHHhc-CCCHHHHHH--
Q 013128 362 ALLRPGRMDMHLHMSY----CNTSVFKQLAFNYLGISHHYL-FEQIEELIKEVN--VTPAEVAGELMK-STNAEVSLN-- 431 (449)
Q Consensus 362 aLlrpgR~d~~i~l~~----p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~~--~tpa~i~~~l~~-~~~~~~al~-- 431 (449)
|=+| -=+..++++. .+.++-.+++..-.+ .++ ..++..+.+.++ ++.-++...-.+ +.+.+.++.
T Consensus 176 a~lR--lr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L 250 (894)
T COG2909 176 ARLR--LRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL 250 (894)
T ss_pred ccee--ehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc
Confidence 3222 1123333332 455666666665443 223 345555655543 333333222223 345555555
Q ss_pred -----HHHHHHHHHH
Q 013128 432 -----GLVKFLHAKM 441 (449)
Q Consensus 432 -----~l~~~l~~~~ 441 (449)
.+.+||.+..
T Consensus 251 sG~~~~l~dYL~eeV 265 (894)
T COG2909 251 SGAASHLSDYLVEEV 265 (894)
T ss_pred cchHHHHHHHHHHHH
Confidence 5555655543
No 396
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0024 Score=60.47 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=32.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN 282 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~ 282 (449)
+.-|.+.|+||+||||+|+.|+..+ +..++.+.+.++...
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4458889999999999999999999 667777777776543
No 397
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.95 E-value=0.00065 Score=70.03 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=93.7
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhc--CCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc--cc-ChHH
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIG--RAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA--VQ-SNSE 284 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~--~~-~~~~ 284 (449)
+|.|.+++|+.++-.|. ...+.-..-| +...-+++|-|.||+.||.|.+.+.+-.-..+|.-.-++ +. +..-
T Consensus 343 EIyGheDVKKaLLLlLV---Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV---GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhh---CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 56788888887765443 2221100011 111123999999999999999999998877777543221 11 1000
Q ss_pred HHH-----HHH-----cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 285 LRF-----LLL-----TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 285 l~~-----~~~-----~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
++. +.. -....+|-+|||+|.+... +|..-.. ...++.....-. |+....+-..-|+++.|
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-DRtAIHE-VMEQQTISIaKA-------GI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-DRTAIHE-VMEQQTISIAKA-------GINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-hhHHHHH-HHHhhhhhhhhh-------ccccchhhhHHhhhhcC
Confidence 000 000 0135789999999998641 1111000 000011111111 22222222345677777
Q ss_pred CCC-------------CCCccccCCCccceEEEe-CCCCHHHHHHHHHHHhCc
Q 013128 355 HKE-------------KLDPALLRPGRMDMHLHM-SYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 355 ~~~-------------~ld~aLlrpgR~d~~i~l-~~p~~~~r~~l~~~~l~~ 393 (449)
... .|++||++ |||..+-+ ..|+.+.=+.|+++..-.
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyV 541 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYV 541 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhh
Confidence 532 47899999 99987665 668888778888876544
No 398
>PLN02459 probable adenylate kinase
Probab=96.95 E-value=0.0046 Score=59.88 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=26.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.++|.||||+|||++++.+|..+++..+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 488899999999999999999998766543
No 399
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.93 E-value=0.002 Score=62.79 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=53.6
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh----HHH
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN----SEL 285 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~----~~l 285 (449)
+|+.-++..+.|.... +-+..+ ....||.|.+|+||+++++..|.-.++.++.+..+.-.+. ..|
T Consensus 9 ~lVlf~~ai~hi~ri~-RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIARIS-RVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHHHH-HHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHH-HHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 4566677766665433 333322 3458999999999999999999999999999987764433 334
Q ss_pred HHHHHcC---CCCceEEeeccc
Q 013128 286 RFLLLTM---PSRSMLVIEDID 304 (449)
Q Consensus 286 ~~~~~~~---~~~~Il~iDeiD 304 (449)
+.++..+ .++.+++|+|-+
T Consensus 78 k~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHhccCCCeEEEecCcc
Confidence 4444433 468888888754
No 400
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.93 E-value=0.0032 Score=57.59 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=39.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc--EEEEe-------cccc-cChHH---HHHHHHcCCCCceEEeeccchhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD--IYDLD-------LSAV-QSNSE---LRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~-------~s~~-~~~~~---l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
..-+.|.||.|+|||||++.|+..+..+ -+.++ .... .+..+ +.-...-..+|.++++||--.-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4458899999999999999999987321 11111 1111 11111 11222234589999999987654
No 401
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.92 E-value=0.0016 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
++++++||+|+|||.++...+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887776
No 402
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.92 E-value=0.0062 Score=67.96 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56899999999999999999877
No 403
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.91 E-value=0.0051 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+..+.|.||+|+|||+|+++|+....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45689999999999999999999873
No 404
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.91 E-value=0.0039 Score=62.95 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=22.0
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+|+|++|||.-|||||+|.-..-..+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcC
Confidence 48999999999999999987766444
No 405
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.91 E-value=0.0042 Score=62.71 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
|++...-+.|+||||||||+|+..+|-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 566666789999999999999998874
No 406
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.90 E-value=0.00059 Score=60.44 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=23.3
Q ss_pred EeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 248 LYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 248 L~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
|.||||+|||++++.||..+++..+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998765543
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00091 Score=61.23 Aligned_cols=29 Identities=45% Similarity=0.786 Sum_probs=24.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
-++|.||||+||||+|+.||+.++. ..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEc
Confidence 3789999999999999999999554 4444
No 408
>PRK01184 hypothetical protein; Provisional
Probab=96.89 E-value=0.0009 Score=61.22 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
-++|.||||+||||+++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 889999887665
No 409
>PTZ00035 Rad51 protein; Provisional
Probab=96.89 E-value=0.0061 Score=61.52 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=23.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
|++...-+.|+||||||||+++..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 5666666899999999999999998854
No 410
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.88 E-value=0.0081 Score=67.20 Aligned_cols=97 Identities=16% Similarity=0.342 Sum_probs=55.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-----CC----------cEEE---Eeccc---ccC--------hHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-----KF----------DIYD---LDLSA---VQS--------NSELRFLLLTMP 293 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~----------~~~~---l~~s~---~~~--------~~~l~~~~~~~~ 293 (449)
.+.++|.||.+.|||++.+.++-.. |. ++++ .+.++ +.. -..+..++....
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 3568999999999999999887542 32 1111 11111 110 122334555567
Q ss_pred CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCC
Q 013128 294 SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEK 358 (449)
Q Consensus 294 ~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ 358 (449)
.+++++|||+..-.. ..........++..+-. .+..+|+||++.+.
T Consensus 407 ~~sLvLlDE~~~GtD-------------p~eg~ala~aile~l~~------~~~~vIitTH~~el 452 (782)
T PRK00409 407 KNSLVLFDELGAGTD-------------PDEGAALAISILEYLRK------RGAKIIATTHYKEL 452 (782)
T ss_pred cCcEEEecCCCCCCC-------------HHHHHHHHHHHHHHHHH------CCCEEEEECChHHH
Confidence 899999999975321 11122233345554422 23477888887543
No 411
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.87 E-value=0.00099 Score=59.83 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=26.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+.+.|++|+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999987764
No 412
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.86 E-value=0.0073 Score=63.41 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=45.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC-----------------------hHHHHHHHHcC
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS-----------------------NSELRFLLLTM 292 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-----------------------~~~l~~~~~~~ 292 (449)
|++...-+||+|+||+|||+|+..+|..+ +.++++++..+-.. -..+...+ ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i-~~ 168 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANI-EE 168 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHH-Hh
Confidence 56666779999999999999999998766 34566665432110 01111111 22
Q ss_pred CCCceEEeeccchhh
Q 013128 293 PSRSMLVIEDIDCSV 307 (449)
Q Consensus 293 ~~~~Il~iDeiD~l~ 307 (449)
.++.+++||.|..+.
T Consensus 169 ~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 169 ENPQACVIDSIQTLY 183 (454)
T ss_pred cCCcEEEEecchhhc
Confidence 468899999999874
No 413
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0036 Score=56.66 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+..+.|.||+|+|||+|++.|+..+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45689999999999999999999873
No 414
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.86 E-value=0.019 Score=57.18 Aligned_cols=29 Identities=38% Similarity=0.399 Sum_probs=25.3
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
.+..+-|+|+=|+|||++++.+-+++...
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 46779999999999999999999988544
No 415
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.83 E-value=0.00084 Score=60.21 Aligned_cols=26 Identities=35% Similarity=0.672 Sum_probs=21.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
|.|.|+||||||||+++++.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 77765
No 416
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.83 E-value=0.0024 Score=54.74 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=43.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC--------------------cEEEEecccccChHHHHHH--HHcCCCCceEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF--------------------DIYDLDLSAVQSNSELRFL--LLTMPSRSMLVI 300 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~--------------------~~~~l~~s~~~~~~~l~~~--~~~~~~~~Il~i 300 (449)
..-++|+|+=|+|||++++++|..++. +++.+|+-.+.+..++..+ .......+|.+|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 346999999999999999999999964 3455666666655554432 233356888888
Q ss_pred eccchh
Q 013128 301 EDIDCS 306 (449)
Q Consensus 301 DeiD~l 306 (449)
|=-+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 855544
No 417
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.83 E-value=0.0011 Score=61.70 Aligned_cols=35 Identities=37% Similarity=0.574 Sum_probs=27.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
-++|+||+|||||.++-++|+.+|.+++.+|--..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47899999999999999999999999999885444
No 418
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.83 E-value=0.0011 Score=65.66 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=26.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc-CCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL-KFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l 274 (449)
.-++|.|||||||||+++.++..+ +..+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 458899999999999999999999 6655543
No 419
>PRK14526 adenylate kinase; Provisional
Probab=96.80 E-value=0.0012 Score=62.14 Aligned_cols=28 Identities=29% Similarity=0.718 Sum_probs=25.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
++|.||||+|||++++.+|..++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876654
No 420
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.77 E-value=0.03 Score=55.33 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=25.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
|-.+++.||+|||||++|..+|..++.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999887
No 421
>PHA00350 putative assembly protein
Probab=96.77 E-value=0.0025 Score=65.23 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=62.3
Q ss_pred ceEEeCCCCCCHHHHHHH--HHHHc--CCcEEEEecccccCh--------------------------HHHHHHHHcCCC
Q 013128 245 GYLLYGPPGTGKSSLIAA--MANQL--KFDIYDLDLSAVQSN--------------------------SELRFLLLTMPS 294 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~a--iA~~l--~~~~~~l~~s~~~~~--------------------------~~l~~~~~~~~~ 294 (449)
-+|++|.||+|||+.+-. |-..+ |..++. ++..+.-+ ..+...+.-.+.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 368899999999998775 33333 665542 33322100 001111111346
Q ss_pred CceEEeeccchhhhcccccch-hhhh-ccchh---hHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013128 295 RSMLVIEDIDCSVKLQNRESS-EVQA-TNQEE---NKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRM 369 (449)
Q Consensus 295 ~~Il~iDeiD~l~~~~~~~~~-~~~~-~~~~~---~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~ 369 (449)
.++|||||+..+++.+..... +.-. ..... ....-..+++++..- ...+.=||++|.++..||..++. ++
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H---RH~G~DIiliTQ~~~~Id~~iR~--lv 156 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH---RHYNWDIILLTPNIRKIHSDIRA--MI 156 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh---cccCceEEEEeCCHHHhhHHHHH--hh
Confidence 789999999999875422100 0000 00000 000011233333321 12345578888898899887765 66
Q ss_pred ce
Q 013128 370 DM 371 (449)
Q Consensus 370 d~ 371 (449)
++
T Consensus 157 E~ 158 (399)
T PHA00350 157 EM 158 (399)
T ss_pred hh
Confidence 65
No 422
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.77 E-value=0.0016 Score=57.78 Aligned_cols=30 Identities=37% Similarity=0.575 Sum_probs=25.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+++.|+||+|||++++.++..+ +...+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 66666654
No 423
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.012 Score=53.82 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=41.2
Q ss_pred eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 013128 371 MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV--NVTPAEVAGELMKSTNAEVSLNGLVKFLHAKMTQ 443 (449)
Q Consensus 371 ~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~--~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 443 (449)
+.|.+-+|+.++.+.-+. ..+.+..+.|..-+... ++..++--.+.+-++|.+.|+..+...+......
T Consensus 116 v~IFi~pPs~eeL~~RL~----~Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNdd~e~a~~~l~~ii~aer~~ 186 (191)
T COG0194 116 VSIFILPPSLEELERRLK----GRGTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALEELKSIILAERLR 186 (191)
T ss_pred EEEEEcCCCHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECccHHHHHHHHHHHHHHHHHH
Confidence 557888888877554443 33444555554444332 1222222233345889999999999988876443
No 424
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.76 E-value=0.0063 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||.|+|||+|++.|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458899999999999999999986
No 425
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.76 E-value=0.029 Score=65.51 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=79.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHH----------------HHHHHcCCCCceEEeeccchhh
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSEL----------------RFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l----------------~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
-.+|+.||..+|||+++..+|.+.|-.++.++-..-.+-.+. .-+.....+.--|++||+....
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 359999999999999999999999999999985544321111 1223334566789999997542
Q ss_pred hcccccchhhhhccchhhHHHHHHHHHHhcCccc-------cCCCCeEEEEEcCCCC------CCCccccCCCccceEEE
Q 013128 308 KLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS-------CCGEGRIIVFTTNHKE------KLDPALLRPGRMDMHLH 374 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~-------~~~~~~iiI~tTN~~~------~ld~aLlrpgR~d~~i~ 374 (449)
. ..-..++.||.---.+.- .+..+..+++|-|.|. .|..|++. || ..++
T Consensus 969 T---------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 969 T---------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred H---------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 1 112234444421111110 0123345666777663 36788887 88 5677
Q ss_pred eCCCCHHHHHHHHH
Q 013128 375 MSYCNTSVFKQLAF 388 (449)
Q Consensus 375 l~~p~~~~r~~l~~ 388 (449)
|..-.+.+...|+.
T Consensus 1031 FddipedEle~ILh 1044 (4600)
T COG5271 1031 FDDIPEDELEEILH 1044 (4600)
T ss_pred cccCcHHHHHHHHh
Confidence 76666666666654
No 426
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.76 E-value=0.0013 Score=60.54 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=25.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
..+.|.||+|+||||+++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 358899999999999999999998876544
No 427
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.74 E-value=0.0042 Score=65.66 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=67.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEecc--ccc------ChHHHHHHHHc-----CCCCceEEeeccchhhhcccc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDLS--AVQ------SNSELRFLLLT-----MPSRSMLVIEDIDCSVKLQNR 312 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s--~~~------~~~~l~~~~~~-----~~~~~Il~iDeiD~l~~~~~~ 312 (449)
+||.|.||||||.+.+.+++-....++.-..+ .+. ...--+..-.+ ...++|-+|||+|.+-. ++|
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd-qDR 563 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND-QDR 563 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc-ccc
Confidence 99999999999999999999988777754321 110 01001111111 14688999999999854 222
Q ss_pred cchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC-------------CCCccccCCCccceEEEe
Q 013128 313 ESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE-------------KLDPALLRPGRMDMHLHM 375 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~-------------~ld~aLlrpgR~d~~i~l 375 (449)
..-... ..++.....-.++...+.+ ...||+|+|... .|-..+++ |||+..-+
T Consensus 564 tSIHEA-MEQQSISISKAGIVtsLqA-------rctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVv 629 (854)
T KOG0477|consen 564 TSIHEA-MEQQSISISKAGIVTSLQA-------RCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVV 629 (854)
T ss_pred chHHHH-HHhcchhhhhhhHHHHHHh-------hhhhheecCCCCCccCCccchhhccccccchhh--hcceeeee
Confidence 221110 0111112222335555432 236788888731 24445666 89986665
No 428
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.73 E-value=0.0064 Score=57.44 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=38.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH-----cCCc---------EEEEecccc------cC-h-------HHHHHHHHcCCCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ-----LKFD---------IYDLDLSAV------QS-N-------SELRFLLLTMPSR 295 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~-----l~~~---------~~~l~~s~~------~~-~-------~~l~~~~~~~~~~ 295 (449)
+-++|.||.|+|||++.+.+|.. .+.. ++.--...+ .. . ..+..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999742 2221 111000111 10 0 2345566667899
Q ss_pred ceEEeeccc
Q 013128 296 SMLVIEDID 304 (449)
Q Consensus 296 ~Il~iDeiD 304 (449)
++++|||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 429
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.73 E-value=0.005 Score=61.65 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=22.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.++++.||+|+|||+++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999874
No 430
>PRK10867 signal recognition particle protein; Provisional
Probab=96.73 E-value=0.19 Score=52.45 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEeccccc
Q 013128 216 ELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSAVQ 280 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~ 280 (449)
.+++.+.+.+...+.....--......+.-+++.||+|+||||++..+|..+ |..+..+++....
T Consensus 73 ~~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 73 QVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred HHHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 3455566566665543211011122335678999999999999999888866 5667767665544
No 431
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.71 E-value=0.0051 Score=61.58 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.++|+.||+|+||||++++++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999986
No 432
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.71 E-value=0.0076 Score=60.28 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.2
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
|++...-+.++||||+|||+++..+|.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 556666689999999999999998886
No 433
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.69 E-value=0.0079 Score=60.72 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=23.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
|++...-++++|+||+|||+++..+|-.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 4555666899999999999999988743
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.029 Score=57.93 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=26.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEeccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSA 278 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~ 278 (449)
+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 34454444433
No 435
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.67 E-value=0.0075 Score=54.16 Aligned_cols=64 Identities=25% Similarity=0.429 Sum_probs=39.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCc---------------EEEEe---------ccccc-ChHHHHHHHHcCC--CCc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFD---------------IYDLD---------LSAVQ-SNSELRFLLLTMP--SRS 296 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~---------------~~~l~---------~s~~~-~~~~l~~~~~~~~--~~~ 296 (449)
+..++.||.|+|||+++++++-.+... +-..+ ++.-. .-..+...+.... .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 478899999999999999986544211 11111 11110 1123344455444 899
Q ss_pred eEEeeccchhh
Q 013128 297 MLVIEDIDCSV 307 (449)
Q Consensus 297 Il~iDeiD~l~ 307 (449)
+++|||+..-.
T Consensus 102 llllDEp~~gl 112 (162)
T cd03227 102 LYILDEIDRGL 112 (162)
T ss_pred EEEEeCCCCCC
Confidence 99999998654
No 436
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.67 E-value=0.0059 Score=56.83 Aligned_cols=37 Identities=32% Similarity=0.353 Sum_probs=27.8
Q ss_pred ChhHHhhh--cCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 231 GKEYYTRI--GRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 231 ~~~~~~~~--g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.+.-+++ |+|.+.-+|+.|+.|||||-|.+.+|-=+
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~ 52 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGF 52 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHH
Confidence 34444555 46666668999999999999999888544
No 437
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.67 E-value=0.0019 Score=62.72 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=30.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
|++....+|++||||||||+++..+|... +.++..++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 66667779999999999999999876643 5566655543
No 438
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.65 E-value=0.0016 Score=62.68 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=26.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
++|.|+||+|||++|++++..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 456666654
No 439
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.65 E-value=0.0021 Score=63.81 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=23.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.++|+.||+|+|||++++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 440
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.64 E-value=0.0076 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
+.-+.|.||.|+|||||.++++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 445889999999999999999743
No 441
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.64 E-value=0.0021 Score=59.89 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
+.-+++.|+||+|||++++.+|.+++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999988754
No 442
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.63 E-value=0.0026 Score=60.93 Aligned_cols=39 Identities=28% Similarity=0.187 Sum_probs=29.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
|++.+..+|++||||||||+++..++.+. |...+.+...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 67777889999999999999998766542 5566665543
No 443
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.63 E-value=0.0075 Score=66.71 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=43.4
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH---cCCcEEEEeccccc---------------------ChHHHH---HHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ---LKFDIYDLDLSAVQ---------------------SNSELR---FLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~~s~~~---------------------~~~~l~---~~~~~ 291 (449)
|++..+.++++||||||||+|+..++.. .+-.+..++...-. ...... ..+.+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4666677999999999999999654433 24445554432210 111111 11223
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+|+||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 34688999999998874
No 444
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.62 E-value=0.0019 Score=61.12 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.4
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEe
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLD 275 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~ 275 (449)
|++.+..+|+.||||||||+++..++... |..++.+.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 67777789999999999999998766433 55655554
No 445
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.61 E-value=0.0027 Score=61.64 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=31.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 278 (449)
|.+..+.+|++|+||||||+++...+... |.+++.+....
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 56677889999999999999999888776 55566665443
No 446
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.60 E-value=0.01 Score=57.52 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=58.4
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEecccccChHHHH-----------------------
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLSAVQSNSELR----------------------- 286 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~~l~----------------------- 286 (449)
|++.+.-+=|+||||||||.|+-.+|-.. +..++++|...-.....+.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 34333335599999999999999887654 3347777755432211111
Q ss_pred ------HHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 287 ------FLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 287 ------~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
.++.. ..+-.+|+||-|-.++...-.... +.......+..+++.|-.+... .++.||.|
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~-----~~~~R~~~L~~~~~~L~~lA~~--~~iaVvvT 184 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRG-----DLAERQRMLARLARILKRLARK--YNIAVVVT 184 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTT-----THHHHHHHHHHHHHHHHHHHHH--TT-EEEEE
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccch-----hhHHHHHHHHHHHHHHHHHHHh--CCceEEee
Confidence 11111 135679999999998752111000 1122345566666666655443 33444443
No 447
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.60 E-value=0.0028 Score=61.87 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=33.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc----------ChHHHHHHH----Hc-CCCCceEEeeccchh
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ----------SNSELRFLL----LT-MPSRSMLVIEDIDCS 306 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~----------~~~~l~~~~----~~-~~~~~Il~iDeiD~l 306 (449)
++|+|.||+|||++|+.|+..+ +..+..++-..+. .+...+..+ .+ .....|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999986 5666666533221 122222221 11 245689999988755
No 448
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.58 E-value=0.018 Score=63.98 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---C--CcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---K--FDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~--~~~~~l~ 275 (449)
+-++|.|+||||||++++++...+ + ..++-+.
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~A 375 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAA 375 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 468899999999999999997766 3 4455444
No 449
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0029 Score=57.37 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
+..+.|.|+||+|||+++++++..+ +.++..++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 3468899999999999999999988 3445555543
No 450
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.012 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=22.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
-.+.+.||.|+|||||.+.+|.-+.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccC
Confidence 3488999999999999999999884
No 451
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0023 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44688999999999999999999985
No 452
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.56 E-value=0.0096 Score=63.05 Aligned_cols=86 Identities=19% Similarity=0.366 Sum_probs=53.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcc-eEEeCCCCCCHHHHHHHHHHHcC---CcEEEEe-----
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRG-YLLYGPPGTGKSSLIAAMANQLK---FDIYDLD----- 275 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~----- 275 (449)
+.+++++.+.++..+.+...+. . +.| +|+.||+|+||||+..++.++++ .+++.+.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~----~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR----R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh----c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 4578888888877666554332 1 345 78999999999999999988884 3344442
Q ss_pred -cccc-----cC--hHHHHHHHHc--CCCCceEEeeccch
Q 013128 276 -LSAV-----QS--NSELRFLLLT--MPSRSMLVIEDIDC 305 (449)
Q Consensus 276 -~s~~-----~~--~~~l~~~~~~--~~~~~Il~iDeiD~ 305 (449)
...+ .. .......+.. ...|-||++.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1111 00 0111112211 25799999999864
No 453
>PRK10646 ADP-binding protein; Provisional
Probab=96.56 E-value=0.019 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.-++|.|+=|+|||++++++|+.++.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999999974
No 454
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.56 E-value=0.0082 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.7
Q ss_pred cceEEeCCCCCCHHH-HHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSS-LIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~-la~aiA~~l~ 268 (449)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 579999999999999 5555555553
No 455
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.56 E-value=0.0023 Score=68.73 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=29.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
-++|.|+||+|||++.+.+|+.++++++++|
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D 38 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADAD 38 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3889999999999999999999999999987
No 456
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.55 E-value=0.0098 Score=62.04 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=40.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcc-eEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRG-YLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
..+|+.+.+.+...+.+...+. .|.| +|+.||.|+|||++..++.++++.+
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 4568999999988887766553 1456 6678999999999999999999643
No 457
>PLN02165 adenylate isopentenyltransferase
Probab=96.54 E-value=0.0023 Score=63.96 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=30.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+..+.|.||+|+|||+|+..||..++..++..|--.+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Qv 79 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQV 79 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChhee
Confidence 3458999999999999999999999988777654433
No 458
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.002 Score=56.81 Aligned_cols=167 Identities=17% Similarity=0.250 Sum_probs=84.6
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhcc
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATN 321 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~ 321 (449)
.+-.+++-|++|||||+++++++.+++.+|++- .++....+....-...+ +.|=|.+
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg--Dd~Hp~~NveKM~~Gip------LnD~DR~--------------- 67 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG--DDLHPPANVEKMTQGIP------LNDDDRW--------------- 67 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCccccc--ccCCCHHHHHHHhcCCC------CCccccc---------------
Confidence 345688899999999999999999999988754 44544444333222211 1111211
Q ss_pred chhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC----CCCCcccc--CCCccc-eEEEeCCCCHHHHHHHHHHHhCcC
Q 013128 322 QEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK----EKLDPALL--RPGRMD-MHLHMSYCNTSVFKQLAFNYLGIS 394 (449)
Q Consensus 322 ~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~----~~ld~aLl--rpgR~d-~~i~l~~p~~~~r~~l~~~~l~~~ 394 (449)
......-..+...++ .++.+|++++.-. +.|-.++- +||.++ ..++|=+... .+..|+++.....
T Consensus 68 -pWL~~i~~~~~~~l~------~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 68 -PWLKKIAVELRKALA------SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRK 139 (191)
T ss_pred -HHHHHHHHHHHHHhh------cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcc
Confidence 111222222222222 1233444444221 22222332 344444 5555555554 6678888888888
Q ss_pred CCCCHHHHHH-HHHccCCCH---HHHHHHHhcCCCHHHHHHHHHHHHHH
Q 013128 395 HHYLFEQIEE-LIKEVNVTP---AEVAGELMKSTNAEVSLNGLVKFLHA 439 (449)
Q Consensus 395 ~~~l~~~i~~-l~~~~~~tp---a~i~~~l~~~~~~~~al~~l~~~l~~ 439 (449)
+|-...++-+ -++..+... .+|..+=.++.++++.++.+.+-+..
T Consensus 140 gHFMp~~lleSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 140 GHFMPADLLESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred cccCCHHHHHHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 8776544322 111111111 11211112335677777777776654
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.53 E-value=0.0058 Score=61.16 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHcCh-hHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 216 ELKREITEDLENFMNGK-EYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~-~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
.+++.+.+.+...+... ..+. .....+.-++|.||+|+||||++..+|..+ +..+.-+++.
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred HHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34555665665555421 1111 111234568899999999999999999988 4455555443
No 460
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.52 E-value=0.0057 Score=60.93 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.8
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 278 (449)
|++.+.-++++||||||||+++..+|... +-.+++++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666678999999999999999998763 23667776544
No 461
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.52 E-value=0.003 Score=61.62 Aligned_cols=53 Identities=32% Similarity=0.523 Sum_probs=39.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcc-eEEeCCCCCCHHHHHHHHHHHcC----CcEEEE
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRG-YLLYGPPGTGKSSLIAAMANQLK----FDIYDL 274 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~----~~~~~l 274 (449)
.+..+|+.|..++-+.+ +.+ .++| ||+.||.|+|||+..+||-+++| .+++.+
T Consensus 103 ~~i~~~e~LglP~i~~~-~~~------------------~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI 160 (353)
T COG2805 103 SKIPTLEELGLPPIVRE-LAE------------------SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI 160 (353)
T ss_pred ccCCCHHHcCCCHHHHH-HHh------------------CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe
Confidence 45568999888875554 221 1567 67789999999999999999996 345544
No 462
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.52 E-value=0.0057 Score=63.38 Aligned_cols=138 Identities=19% Similarity=0.278 Sum_probs=73.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecc-cc-------cChHHHHHHHHc-----CCCCceEEeeccchhhhccc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLS-AV-------QSNSELRFLLLT-----MPSRSMLVIEDIDCSVKLQN 311 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s-~~-------~~~~~l~~~~~~-----~~~~~Il~iDeiD~l~~~~~ 311 (449)
++||.|.|||.||.|.+-+-.-.-.-+|.-.-+ +. .-++.-+....+ ....+|++|||+|.+-. .+
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre-~D 444 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE-DD 444 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc-hh
Confidence 499999999999999998877665555542211 11 001111111111 13678999999998743 01
Q ss_pred ccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC-----------CCC--CccccCCCccceEEEeCCC
Q 013128 312 RESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK-----------EKL--DPALLRPGRMDMHLHMSYC 378 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-----------~~l--d~aLlrpgR~d~~i~l~~p 378 (449)
|..- ...-.+.++|---. |+....+...-|+++.|.+ +.| .|.++. |||+.+-+..-
T Consensus 445 RVAI-----HEAMEQQTISIAKA---GITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~ 514 (729)
T KOG0481|consen 445 RVAI-----HEAMEQQTISIAKA---GITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDE 514 (729)
T ss_pred hhHH-----HHHHHhhhHHHhhh---cceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEecc
Confidence 1000 00011122221111 2222222333466777764 223 378888 99997777543
Q ss_pred -CHHHHHHHHHHHhCc
Q 013128 379 -NTSVFKQLAFNYLGI 393 (449)
Q Consensus 379 -~~~~r~~l~~~~l~~ 393 (449)
+++.=..|+++.+..
T Consensus 515 h~~~~D~~lAkHVI~v 530 (729)
T KOG0481|consen 515 HDEERDITLAKHVINV 530 (729)
T ss_pred CcchhhhHHHHHhhhh
Confidence 444455666666654
No 463
>PRK14529 adenylate kinase; Provisional
Probab=96.51 E-value=0.002 Score=61.14 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=25.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
++|.||||+||||+++.||..+++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999987653
No 464
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.51 E-value=0.1 Score=49.95 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=89.5
Q ss_pred Ccc-eEEeCCCCCCHHHHHHHHHHHcCCc---EEEEecccccC--------------------------hHHHHHHHHcC
Q 013128 243 KRG-YLLYGPPGTGKSSLIAAMANQLKFD---IYDLDLSAVQS--------------------------NSELRFLLLTM 292 (449)
Q Consensus 243 ~rg-~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~~--------------------------~~~l~~~~~~~ 292 (449)
.+| +.+.|+-|||||.+++|+..-++-+ ++.++...+.. ...|..++.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 344 6688999999999999887777432 22333222211 12334455556
Q ss_pred CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCc--------ccc
Q 013128 293 PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDP--------ALL 364 (449)
Q Consensus 293 ~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~--------aLl 364 (449)
..|.++++||.+.+.. ..-..+.-|.|.-++... .-.+++|+=. +|.+ .+-
T Consensus 130 ~r~v~l~vdEah~L~~---------------~~le~Lrll~nl~~~~~~--~l~ivL~Gqp----~L~~~lr~~~l~e~~ 188 (269)
T COG3267 130 KRPVVLMVDEAHDLND---------------SALEALRLLTNLEEDSSK--LLSIVLIGQP----KLRPRLRLPVLRELE 188 (269)
T ss_pred CCCeEEeehhHhhhCh---------------hHHHHHHHHHhhcccccC--ceeeeecCCc----ccchhhchHHHHhhh
Confidence 6789999999998753 011122223333322211 1223444421 1222 223
Q ss_pred CCCccceEEEeCCCCHHHHHHHHHHHhCcC--CCCCH--HHHHHHHHccCCCHHHHHHHHh
Q 013128 365 RPGRMDMHLHMSYCNTSVFKQLAFNYLGIS--HHYLF--EQIEELIKEVNVTPAEVAGELM 421 (449)
Q Consensus 365 rpgR~d~~i~l~~p~~~~r~~l~~~~l~~~--~~~l~--~~i~~l~~~~~~tpa~i~~~l~ 421 (449)
. |++..|++++.+.++-...++..|+.. +.+++ +.+..+-....-.|.-|.+.+.
T Consensus 189 ~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 189 Q--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred h--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 4 898889999999998888888888753 34443 2333333333447777766654
No 465
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.50 E-value=0.0027 Score=58.01 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.|.|+||+|||++++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 888877665
No 466
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.50 E-value=0.013 Score=54.84 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=19.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-+.+.||+|||||+||-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999776
No 467
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.49 E-value=0.015 Score=55.57 Aligned_cols=97 Identities=20% Similarity=0.352 Sum_probs=55.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc-----CC----c-----E-----EEEecc-cccC--------hHHHHHHHHcCCCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL-----KF----D-----I-----YDLDLS-AVQS--------NSELRFLLLTMPSR 295 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l-----~~----~-----~-----~~l~~s-~~~~--------~~~l~~~~~~~~~~ 295 (449)
+.++|.||..+|||++.+++|-.. |. . + ..+... ++.. -.++..++....++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 678999999999999999988655 31 1 1 111111 1111 14456777778899
Q ss_pred ceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCC
Q 013128 296 SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEK 358 (449)
Q Consensus 296 ~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ 358 (449)
++++|||+-.-. ...+.......++..+-.. .+..+|+||+..+-
T Consensus 124 sLvliDE~g~gT-------------~~~eg~ai~~aile~l~~~-----~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 124 SLVLIDELGRGT-------------NPEEGIAIAIAILEYLLEK-----SGCFVIIATHFHEL 168 (235)
T ss_dssp EEEEEESTTTTS-------------SHHHHHHHHHHHHHHHHHT-----TT-EEEEEES-GGG
T ss_pred eeeecccccCCC-------------ChhHHHHHHHHHHHHHHHh-----ccccEEEEeccchh
Confidence 999999996521 1122233344455555321 13467888887653
No 468
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.48 E-value=0.31 Score=50.82 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEeccccc
Q 013128 216 ELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSAVQ 280 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~ 280 (449)
.+.+.+.+.+...+.....--......+..+++.||||+|||+++..+|..+ +..+..+++....
T Consensus 72 ~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 72 QFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3455555555555543211011112235679999999999999999998875 4566666666543
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.48 E-value=0.0023 Score=58.25 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
-++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998864
No 470
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.48 E-value=0.0081 Score=58.80 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCh-hHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccc
Q 013128 217 LKREITEDLENFMNGK-EYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAV 279 (449)
Q Consensus 217 ~k~~i~~~l~~~~~~~-~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (449)
..+.+.+.+...+... ..+. .....++.++|.||||+|||+++..+|..+ +..+.-+++...
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~-~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELI-VEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred HHHHHHHHHHHHHcccchhhc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4445555555554432 1111 112234668888999999999999999887 555655555443
No 471
>PTZ00301 uridine kinase; Provisional
Probab=96.47 E-value=0.037 Score=52.02 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHccCCCHHHH-------HHH
Q 013128 347 RIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEVNVTPAEV-------AGE 419 (449)
Q Consensus 347 ~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i-------~~~ 419 (449)
.+||.--++. .-++.+.. .+|..|++..|....+.....+-....+.....-+..........-++. +..
T Consensus 108 ~ViIvEGi~~-l~~~~l~~--l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADi 184 (210)
T PTZ00301 108 SVLIVEGILL-FTNAELRN--EMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADI 184 (210)
T ss_pred cEEEEechhh-hCCHHHHH--hCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcE
Confidence 3555555554 12467766 8999999998877666655555544334443333333332211111111 112
Q ss_pred Hhc-CCCHHHHHHHHHHHHHH
Q 013128 420 LMK-STNAEVSLNGLVKFLHA 439 (449)
Q Consensus 420 l~~-~~~~~~al~~l~~~l~~ 439 (449)
++. ..+.+.++..+...++.
T Consensus 185 Ii~~~~~~~~~~~~~~~~~~~ 205 (210)
T PTZ00301 185 IVPSWKDNSVAVGVLRAKLNH 205 (210)
T ss_pred EEcCCCcchHHHHHHHHHHHH
Confidence 222 23567777777666554
No 472
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.45 E-value=0.0029 Score=58.85 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEeccccc
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDLSAVQ 280 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~~ 280 (449)
.|.-+++.|+||+|||+++..+...+ +..++.++...+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 36779999999999999999999998 7777888776664
No 473
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.45 E-value=0.0067 Score=66.89 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.3
Q ss_pred CCCCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 240 RAWKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 240 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
++++.-+-+.|++|||||||++.+.+...
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344499999999999999999999883
No 474
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.012 Score=62.32 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=41.5
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEeccc--c--------------------cChHHHHHHHHcCCC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSA--V--------------------QSNSELRFLLLTMPS 294 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~--~--------------------~~~~~l~~~~~~~~~ 294 (449)
++..+.|.||+|+|||+++..||..+ +..+..++... . .+...+...+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34568899999999999999999865 22343333221 1 112345555555566
Q ss_pred CceEEeeccch
Q 013128 295 RSMLVIEDIDC 305 (449)
Q Consensus 295 ~~Il~iDeiD~ 305 (449)
..+||||..-.
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 77888888754
No 475
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.014 Score=52.87 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+..+.|.||.|+|||+|++.||..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999976
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.42 E-value=0.0024 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+..+++.||+|+|||+++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45799999999999999999999874
No 477
>PRK12338 hypothetical protein; Provisional
Probab=96.41 E-value=0.003 Score=62.88 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
|.-+++.|+||||||++++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45789999999999999999999998754
No 478
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.40 E-value=0.0032 Score=56.23 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=30.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
..|.|.|.||+|||++|+++...| +.+++.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 357899999999999999999988 6788888766554
No 479
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.40 E-value=0.017 Score=54.62 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=42.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-----CC---------cE-----EEEecc-cccC--------hHHHHHHHHcCCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-----KF---------DI-----YDLDLS-AVQS--------NSELRFLLLTMPS 294 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~---------~~-----~~l~~s-~~~~--------~~~l~~~~~~~~~ 294 (449)
++.++|.||.|.|||++.+.++... |. ++ ..+... ++.. -.++..++.....
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999887653 21 11 111111 1111 1445567777889
Q ss_pred CceEEeeccch
Q 013128 295 RSMLVIEDIDC 305 (449)
Q Consensus 295 ~~Il~iDeiD~ 305 (449)
+++++|||+..
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999864
No 480
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.40 E-value=0.022 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 013128 246 YLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~ 266 (449)
+++.|+||+|||+|+.++++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999875
No 481
>PRK04328 hypothetical protein; Provisional
Probab=96.40 E-value=0.0044 Score=59.86 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=28.6
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH-c--CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ-L--KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~-l--~~~~~~l~~ 276 (449)
|++.+..+|++||||||||+|+..++.+ + |.+.+.++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5667778999999999999998876654 2 455555544
No 482
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.38 E-value=0.0027 Score=57.56 Aligned_cols=22 Identities=36% Similarity=0.860 Sum_probs=20.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l 267 (449)
++|.|+||+||||+++.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 483
>PRK10436 hypothetical protein; Provisional
Probab=96.36 E-value=0.016 Score=60.83 Aligned_cols=86 Identities=17% Similarity=0.419 Sum_probs=53.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcc-eEEeCCCCCCHHHHHHHHHHHcC---CcEEEEe-----
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRG-YLLYGPPGTGKSSLIAAMANQLK---FDIYDLD----- 275 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~----- 275 (449)
+.+++++.+.+...+.+.+.+. . +.| +|+.||+|+||||+..++.++++ .+++.+.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~----~-----------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ----Q-----------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH----h-----------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 3478899888877666654432 1 344 78899999999999999888874 3344432
Q ss_pred -cccc-----c--ChHHHHHHHHcC--CCCceEEeeccch
Q 013128 276 -LSAV-----Q--SNSELRFLLLTM--PSRSMLVIEDIDC 305 (449)
Q Consensus 276 -~s~~-----~--~~~~l~~~~~~~--~~~~Il~iDeiD~ 305 (449)
+..+ . ....+...+... ..|-||++.||-.
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1111 1 011222222222 4799999999863
No 484
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.35 E-value=0.0032 Score=58.55 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
|+-++|.||+|+||||++.-+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999999999888
No 485
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.35 E-value=0.013 Score=62.01 Aligned_cols=91 Identities=20% Similarity=0.407 Sum_probs=55.3
Q ss_pred cccccC-CHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC-cEEEEecccccChHHH
Q 013128 208 FKTLAL-DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF-DIYDLDLSAVQSNSEL 285 (449)
Q Consensus 208 f~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~~~l~~s~~~~~~~l 285 (449)
++++.+ +.++..-+.+.+-.-+... ..+...+.|+||-|+|||+++..|.+-+|. .+-.+..+.+.....-
T Consensus 201 L~~~~~~d~el~~ll~~i~g~~l~g~-------~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~~ 273 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIGASLTGR-------VSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRH 273 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHhheecCc-------ccceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhccC
Confidence 456655 5555444444433222221 335678999999999999999999999975 4444555544422222
Q ss_pred HHHHHcCCCCceEEeeccch
Q 013128 286 RFLLLTMPSRSMLVIEDIDC 305 (449)
Q Consensus 286 ~~~~~~~~~~~Il~iDeiD~ 305 (449)
+.-++..-...++..+|.+.
T Consensus 274 ~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 274 PFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred cchHHHhhCceEEEecCccc
Confidence 23344445667777777665
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.34 E-value=0.017 Score=59.07 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=24.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+..+.+.||.|||||++++++.+.+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 567899999999999999999999844
No 487
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.34 E-value=0.0051 Score=58.29 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=27.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
|++.+..++++||||||||+++..++.+. +..++.++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 56667779999999999999999877543 44444444
No 488
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.32 E-value=0.0094 Score=54.66 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=21.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-.+++||||+|||+++..+|..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 348899999999999999998876
No 489
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.32 E-value=0.032 Score=53.32 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=18.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 013128 246 YLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+|.||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999865
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.32 E-value=0.0046 Score=62.87 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=22.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.||+|+||||+++++++++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999987
No 491
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.31 E-value=0.0035 Score=57.21 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=27.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ 280 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (449)
.-+.|.||+|+|||+++++++..++.. .++...+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~~ 38 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDLH 38 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCcccC
Confidence 458899999999999999999999874 34444443
No 492
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.30 E-value=0.011 Score=60.15 Aligned_cols=104 Identities=24% Similarity=0.295 Sum_probs=60.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC-------CcEEEEeccccc--------------------ChHHHHHHHHcCCCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK-------FDIYDLDLSAVQ--------------------SNSELRFLLLTMPSR 295 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~s~~~--------------------~~~~l~~~~~~~~~~ 295 (449)
++-+.|.||.|+||||.++-+|..+. .-++.+|.-.+. +..++...+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56688999999999999888888774 334454433332 234444555555566
Q ss_pred ceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCcccc
Q 013128 296 SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALL 364 (449)
Q Consensus 296 ~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLl 364 (449)
-+|++|=+... ......+.+|-.+++...+ -...+++.+|...+.+...+-
T Consensus 283 d~ILVDTaGrs----------------~~D~~~i~el~~~~~~~~~--i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 283 DVILVDTAGRS----------------QYDKEKIEELKELIDVSHS--IEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred CEEEEeCCCCC----------------ccCHHHHHHHHHHHhcccc--ceEEEEEecCcchHHHHHHHH
Confidence 77777766542 2223455666666665422 122344444444444544443
No 493
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.30 E-value=0.0038 Score=57.61 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=23.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc-CCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL-KFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l-~~~~~~l 274 (449)
+.+.|+||||||++|+.++..+ +..++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 5688999999999999999998 4444433
No 494
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.30 E-value=0.0055 Score=58.47 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 276 (449)
|.+++.-++|.||||+|||+++..+|... +.+++.+++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 66666779999999999999998887665 677776653
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.29 E-value=0.0059 Score=57.09 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=27.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC-CcEEEEeccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK-FDIYDLDLSA 278 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~-~~~~~l~~s~ 278 (449)
+.-+.|.||+|||||||+++|+..++ ..+..++...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 34588999999999999999999983 3444454443
No 496
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.29 E-value=0.0072 Score=61.37 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-+++.|.||||||.|+-.+|.++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 458899999999999999999998
No 497
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.28 E-value=0.0032 Score=56.68 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.5
Q ss_pred eCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 249 YGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 249 ~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.||||||||+++++++..++..+++-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998765544
No 498
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.28 E-value=0.024 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.++|.|+||+|||++++++++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998554
No 499
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.27 E-value=0.0054 Score=55.48 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=28.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ 280 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 280 (449)
+++.||||+|||++++.+|..+ +..+..+++....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 6889999999999999999886 6677777766543
No 500
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.27 E-value=0.0098 Score=61.89 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=28.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc-EEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD-IYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~-~~~l~ 275 (449)
|.-+++.|+||||||+++..+|..++.. ++..|
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD 288 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTD 288 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehh
Confidence 6779999999999999999999999985 33433
Done!