Query 013128
Match_columns 449
No_of_seqs 397 out of 2697
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 4.5E-40 1.5E-44 332.8 22.6 214 202-421 141-363 (405)
2 4b4t_I 26S protease regulatory 100.0 1.2E-39 4.3E-44 330.5 21.9 215 201-421 174-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 4.5E-39 1.6E-43 330.1 21.5 214 202-421 174-396 (437)
4 4b4t_M 26S protease regulatory 100.0 2.1E-39 7.1E-44 332.3 18.8 234 201-440 173-422 (434)
5 4b4t_H 26S protease regulatory 100.0 2E-38 7E-43 324.5 21.6 214 202-421 202-424 (467)
6 4b4t_K 26S protease regulatory 100.0 2.4E-38 8.2E-43 324.2 20.6 214 202-421 165-388 (428)
7 3cf2_A TER ATPase, transitiona 100.0 3.3E-34 1.1E-38 313.0 9.2 213 203-421 471-692 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.3E-32 8E-37 298.4 18.3 209 204-421 199-416 (806)
9 3cf0_A Transitional endoplasmi 100.0 1.1E-28 3.8E-33 243.1 20.3 214 202-421 8-230 (301)
10 2x8a_A Nuclear valosin-contain 100.0 1.2E-28 4.3E-33 239.6 19.4 209 204-421 5-227 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.2E-27 2.1E-31 232.8 24.6 207 203-420 6-223 (322)
12 3h4m_A Proteasome-activating n 100.0 2.7E-27 9.3E-32 230.2 21.6 216 200-421 8-232 (285)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.6E-27 1.6E-31 225.3 21.8 211 205-421 2-223 (262)
14 2ce7_A Cell division protein F 99.9 7.3E-27 2.5E-31 242.8 20.8 212 203-421 10-230 (476)
15 3eie_A Vacuolar protein sortin 99.9 7.8E-27 2.7E-31 231.9 18.2 210 201-421 10-229 (322)
16 1lv7_A FTSH; alpha/beta domain 99.9 4.2E-26 1.4E-30 219.0 22.4 213 202-421 5-226 (257)
17 2qp9_X Vacuolar protein sortin 99.9 2.8E-26 9.7E-31 231.0 18.1 209 202-421 44-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 1.1E-25 3.9E-30 235.3 19.7 209 204-421 199-416 (489)
19 2zan_A Vacuolar protein sortin 99.9 2.1E-25 7.3E-30 231.1 19.2 209 202-421 127-346 (444)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 7.1E-25 2.4E-29 229.1 21.1 211 204-421 26-245 (499)
21 2r62_A Cell division protease 99.9 1.1E-26 3.7E-31 224.1 4.9 214 203-421 5-227 (268)
22 3vfd_A Spastin; ATPase, microt 99.9 1.5E-24 5E-29 221.0 20.3 212 200-421 106-327 (389)
23 1ixz_A ATP-dependent metallopr 99.9 3.2E-24 1.1E-28 205.4 20.4 213 202-421 9-230 (254)
24 3d8b_A Fidgetin-like protein 1 99.9 3.1E-24 1E-28 216.3 20.7 210 202-421 77-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 1E-23 3.5E-28 206.3 18.9 210 202-421 14-234 (297)
26 3t15_A Ribulose bisphosphate c 99.9 3.9E-24 1.3E-28 209.8 14.0 164 237-408 30-214 (293)
27 1iy2_A ATP-dependent metallopr 99.9 3.8E-23 1.3E-27 200.9 20.7 213 202-421 33-254 (278)
28 1ypw_A Transitional endoplasmi 99.9 2.6E-26 8.8E-31 253.8 -3.0 213 203-421 471-692 (806)
29 1ypw_A Transitional endoplasmi 99.9 9.4E-22 3.2E-26 217.4 18.1 209 203-420 198-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 3.1E-19 1E-23 177.6 21.7 196 193-420 17-227 (338)
31 1hqc_A RUVB; extended AAA-ATPa 99.8 3E-18 1E-22 169.0 20.6 191 202-420 5-211 (324)
32 2c9o_A RUVB-like 1; hexameric 99.8 3.3E-20 1.1E-24 192.8 6.3 169 204-380 32-226 (456)
33 3syl_A Protein CBBX; photosynt 99.8 1.9E-18 6.5E-23 169.5 13.3 177 210-403 32-229 (309)
34 1ofh_A ATP-dependent HSL prote 99.8 2.3E-17 7.7E-22 161.3 19.0 174 209-390 15-214 (310)
35 3u61_B DNA polymerase accessor 99.8 9.1E-18 3.1E-22 166.1 15.4 159 192-391 13-178 (324)
36 1g41_A Heat shock protein HSLU 99.7 5.9E-19 2E-23 181.1 5.3 163 209-387 15-188 (444)
37 2chg_A Replication factor C sm 99.7 5E-17 1.7E-21 149.9 16.7 177 202-416 10-200 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 1.9E-16 6.7E-21 152.8 17.9 167 209-389 33-210 (272)
39 1njg_A DNA polymerase III subu 99.7 4.3E-16 1.5E-20 145.2 19.1 182 202-420 16-228 (250)
40 3uk6_A RUVB-like 2; hexameric 99.7 2E-16 6.7E-21 158.9 16.9 184 204-420 38-303 (368)
41 1sxj_A Activator 1 95 kDa subu 99.7 1.8E-16 6.2E-21 167.1 17.3 177 192-395 26-226 (516)
42 3hws_A ATP-dependent CLP prote 99.7 9.1E-18 3.1E-22 169.1 5.8 176 210-391 16-269 (363)
43 1jbk_A CLPB protein; beta barr 99.7 4.9E-17 1.7E-21 146.4 8.5 154 202-387 15-194 (195)
44 3m6a_A ATP-dependent protease 99.7 2.7E-16 9.3E-21 166.6 13.5 160 208-391 80-266 (543)
45 2chq_A Replication factor C sm 99.7 3.2E-16 1.1E-20 153.6 12.8 164 193-398 5-181 (319)
46 3pvs_A Replication-associated 99.6 8.8E-16 3E-20 158.8 14.5 151 202-393 19-180 (447)
47 1iqp_A RFCS; clamp loader, ext 99.6 1.6E-15 5.4E-20 149.2 15.0 164 193-398 13-189 (327)
48 2r44_A Uncharacterized protein 99.6 1.9E-15 6.5E-20 149.9 15.4 155 204-393 22-200 (331)
49 3bos_A Putative DNA replicatio 99.6 9.3E-16 3.2E-20 143.7 11.6 165 202-398 21-194 (242)
50 4fcw_A Chaperone protein CLPB; 99.6 1.9E-15 6.6E-20 148.0 14.3 161 209-393 17-231 (311)
51 1jr3_A DNA polymerase III subu 99.6 7.1E-15 2.4E-19 147.4 18.7 160 202-398 9-198 (373)
52 1sxj_D Activator 1 41 kDa subu 99.6 1.4E-15 4.7E-20 151.5 13.1 161 193-395 25-209 (353)
53 1sxj_B Activator 1 37 kDa subu 99.6 3.8E-15 1.3E-19 146.1 15.7 161 193-395 9-183 (323)
54 1l8q_A Chromosomal replication 99.6 2.7E-15 9.3E-20 148.4 13.9 187 202-419 4-207 (324)
55 2v1u_A Cell division control p 99.6 3.8E-15 1.3E-19 149.6 14.8 160 207-392 17-215 (387)
56 1um8_A ATP-dependent CLP prote 99.6 4E-15 1.4E-19 150.4 14.1 174 210-389 22-284 (376)
57 1in4_A RUVB, holliday junction 99.6 4.7E-14 1.6E-18 140.4 21.3 191 202-420 18-223 (334)
58 2p65_A Hypothetical protein PF 99.6 1.3E-15 4.5E-20 136.8 7.6 147 202-379 15-187 (187)
59 3te6_A Regulatory protein SIR3 99.6 2.1E-14 7.3E-19 141.6 16.6 200 211-443 22-289 (318)
60 2qby_B CDC6 homolog 3, cell di 99.6 1.5E-14 5.2E-19 145.5 15.3 151 209-392 20-211 (384)
61 1sxj_E Activator 1 40 kDa subu 99.6 2.1E-14 7E-19 143.3 14.9 186 194-420 3-237 (354)
62 2z4s_A Chromosomal replication 99.6 1.9E-14 6.5E-19 148.7 14.9 188 202-419 98-305 (440)
63 2qby_A CDC6 homolog 1, cell di 99.6 5E-14 1.7E-18 141.1 17.2 159 206-392 17-211 (386)
64 3pxi_A Negative regulator of g 99.6 2.1E-14 7.2E-19 158.0 15.6 159 209-392 491-676 (758)
65 3pxg_A Negative regulator of g 99.6 4.3E-14 1.5E-18 147.1 16.5 148 202-393 173-340 (468)
66 1g8p_A Magnesium-chelatase 38 99.6 2E-14 6.7E-19 143.0 13.1 155 202-391 17-232 (350)
67 1fnn_A CDC6P, cell division co 99.6 1.4E-13 5E-18 138.3 19.3 160 207-393 15-208 (389)
68 1qvr_A CLPB protein; coiled co 99.5 6.2E-14 2.1E-18 156.2 17.4 159 202-392 163-346 (854)
69 2bjv_A PSP operon transcriptio 99.5 4.3E-14 1.5E-18 135.7 13.8 156 206-392 3-195 (265)
70 1r6b_X CLPA protein; AAA+, N-t 99.5 6.9E-14 2.4E-18 153.9 17.1 159 209-392 458-667 (758)
71 1sxj_C Activator 1 40 kDa subu 99.5 1.7E-13 5.8E-18 136.5 16.1 161 193-395 13-186 (340)
72 1r6b_X CLPA protein; AAA+, N-t 99.5 2.3E-13 8E-18 149.7 17.6 160 202-392 179-363 (758)
73 3pxi_A Negative regulator of g 99.5 2.8E-13 9.7E-18 149.0 16.4 148 202-393 173-340 (758)
74 3n70_A Transport activator; si 99.5 9.8E-14 3.3E-18 121.3 8.3 132 210-378 2-144 (145)
75 1a5t_A Delta prime, HOLB; zinc 99.4 4.2E-12 1.4E-16 126.3 18.9 124 243-391 24-180 (334)
76 1ojl_A Transcriptional regulat 99.4 1.2E-12 4.1E-17 128.6 13.4 153 209-392 2-191 (304)
77 1qvr_A CLPB protein; coiled co 99.4 1.2E-12 4.2E-17 145.7 13.2 159 209-392 558-771 (854)
78 3co5_A Putative two-component 99.4 2.5E-13 8.6E-18 118.4 4.7 132 210-378 5-142 (143)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 4.1E-12 1.4E-16 132.7 13.6 146 210-392 23-197 (500)
80 2gno_A DNA polymerase III, gam 99.3 5.9E-12 2E-16 123.7 11.3 123 243-392 18-153 (305)
81 3f9v_A Minichromosome maintena 99.3 3.3E-13 1.1E-17 144.4 2.1 127 245-393 329-492 (595)
82 4akg_A Glutathione S-transfera 99.3 1.7E-11 5.8E-16 148.2 15.2 137 243-392 1267-1432(2695)
83 3ec2_A DNA replication protein 99.3 4.5E-12 1.6E-16 114.3 7.6 130 203-357 4-144 (180)
84 1w5s_A Origin recognition comp 99.3 6.4E-11 2.2E-15 120.0 15.7 164 207-392 20-229 (412)
85 2w58_A DNAI, primosome compone 99.1 4.8E-11 1.6E-15 109.4 7.0 97 204-306 20-127 (202)
86 1tue_A Replication protein E1; 99.0 5.1E-10 1.8E-14 102.8 9.1 114 239-378 54-179 (212)
87 1svm_A Large T antigen; AAA+ f 99.0 2.2E-10 7.4E-15 115.6 5.3 121 238-377 164-284 (377)
88 2qgz_A Helicase loader, putati 99.0 3.5E-10 1.2E-14 111.2 6.0 97 204-306 119-226 (308)
89 3k1j_A LON protease, ATP-depen 99.0 9.2E-10 3.2E-14 118.0 9.5 53 202-269 34-86 (604)
90 3cmw_A Protein RECA, recombina 99.0 7E-10 2.4E-14 129.2 8.5 147 206-356 1017-1218(1706)
91 2kjq_A DNAA-related protein; s 98.9 1.8E-09 6.1E-14 94.7 7.5 58 243-307 36-96 (149)
92 2fna_A Conserved hypothetical 98.9 3.4E-08 1.2E-12 97.4 15.7 174 206-418 10-248 (357)
93 3vkg_A Dynein heavy chain, cyt 98.8 2.4E-08 8.2E-13 121.9 15.7 135 243-392 1304-1470(3245)
94 2r2a_A Uncharacterized protein 98.8 7.4E-09 2.5E-13 95.2 8.3 120 244-381 6-156 (199)
95 2qen_A Walker-type ATPase; unk 98.8 9.3E-07 3.2E-11 86.8 22.9 180 204-418 7-244 (350)
96 1u0j_A DNA replication protein 98.7 4.4E-08 1.5E-12 93.7 11.2 119 241-388 102-248 (267)
97 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.3E-09 1.5E-13 103.2 4.1 113 239-363 119-242 (331)
98 4akg_A Glutathione S-transfera 98.7 8.4E-08 2.9E-12 116.4 15.4 133 243-389 645-791 (2695)
99 1ny5_A Transcriptional regulat 98.7 2.6E-07 8.8E-12 93.6 16.5 174 208-412 136-353 (387)
100 3dzd_A Transcriptional regulat 98.7 4.8E-07 1.6E-11 91.0 17.3 152 210-392 130-317 (368)
101 3f8t_A Predicted ATPase involv 98.4 2.1E-07 7E-12 95.5 7.1 139 211-382 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.3 1.8E-06 6E-11 105.8 13.1 132 244-393 605-755 (3245)
103 3cmu_A Protein RECA, recombina 98.3 5.9E-07 2E-11 106.1 7.1 112 240-355 1424-1562(2050)
104 1jr3_D DNA polymerase III, del 98.1 2E-05 6.7E-10 78.0 11.3 126 243-395 18-159 (343)
105 1ye8_A Protein THEP1, hypothet 98.0 1.7E-05 5.9E-10 71.2 9.3 28 245-272 2-29 (178)
106 1z6t_A APAF-1, apoptotic prote 98.0 8.9E-05 3E-09 78.5 16.1 162 207-414 122-322 (591)
107 3sfz_A APAF-1, apoptotic pepti 97.8 0.00017 5.9E-09 82.4 15.2 164 204-413 119-321 (1249)
108 3upu_A ATP-dependent DNA helic 97.8 0.00013 4.3E-09 75.3 12.1 68 193-277 12-83 (459)
109 2cvh_A DNA repair and recombin 97.7 0.00017 5.7E-09 65.9 10.4 40 239-278 16-55 (220)
110 3trf_A Shikimate kinase, SK; a 97.7 2.1E-05 7.3E-10 70.2 3.8 33 243-275 5-37 (185)
111 1qhx_A CPT, protein (chloramph 97.6 4.2E-05 1.4E-09 67.7 5.0 35 243-277 3-37 (178)
112 3vaa_A Shikimate kinase, SK; s 97.6 3.2E-05 1.1E-09 70.2 3.9 33 243-275 25-57 (199)
113 3hr8_A Protein RECA; alpha and 97.6 0.00016 5.5E-09 72.0 9.2 70 239-308 57-153 (356)
114 2z43_A DNA repair and recombin 97.6 0.00012 4.2E-09 71.9 8.3 40 239-278 103-151 (324)
115 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00038 1.3E-08 63.8 10.9 37 239-275 19-58 (235)
116 3kb2_A SPBC2 prophage-derived 97.6 6.1E-05 2.1E-09 66.0 5.2 32 245-276 3-34 (173)
117 1v5w_A DMC1, meiotic recombina 97.6 0.00023 7.7E-09 70.6 9.9 40 239-278 118-166 (343)
118 1n0w_A DNA repair protein RAD5 97.6 0.0002 6.9E-09 66.4 8.9 40 239-278 20-68 (243)
119 2rhm_A Putative kinase; P-loop 97.6 3.6E-05 1.2E-09 69.0 3.5 33 242-274 4-36 (193)
120 2zr9_A Protein RECA, recombina 97.6 0.00017 6E-09 71.6 8.7 69 239-307 57-152 (349)
121 4a74_A DNA repair and recombin 97.5 0.00023 7.8E-09 65.4 8.4 29 239-267 21-49 (231)
122 3cmu_A Protein RECA, recombina 97.5 0.00018 6E-09 85.4 9.1 70 239-308 1077-1173(2050)
123 1pzn_A RAD51, DNA repair and r 97.5 0.00027 9.2E-09 70.3 9.2 29 239-267 127-155 (349)
124 1u94_A RECA protein, recombina 97.5 0.00014 4.8E-09 72.5 7.0 70 239-308 59-155 (356)
125 3iij_A Coilin-interacting nucl 97.5 5.6E-05 1.9E-09 67.2 3.6 33 243-275 11-43 (180)
126 1via_A Shikimate kinase; struc 97.5 5.7E-05 1.9E-09 66.9 3.4 30 245-274 6-35 (175)
127 2ehv_A Hypothetical protein PH 97.5 0.00047 1.6E-08 64.1 9.9 26 239-264 26-51 (251)
128 1xp8_A RECA protein, recombina 97.4 0.00043 1.5E-08 69.3 10.0 70 239-308 70-166 (366)
129 2iyv_A Shikimate kinase, SK; t 97.4 6.8E-05 2.3E-09 66.9 3.8 32 244-275 3-34 (184)
130 1kag_A SKI, shikimate kinase I 97.4 7.5E-05 2.6E-09 65.8 3.8 31 244-274 5-35 (173)
131 1y63_A LMAJ004144AAA protein; 97.4 7E-05 2.4E-09 67.1 3.7 33 243-275 10-43 (184)
132 1zuh_A Shikimate kinase; alpha 97.4 7.4E-05 2.5E-09 65.7 3.7 32 244-275 8-39 (168)
133 2orw_A Thymidine kinase; TMTK, 97.4 5E-05 1.7E-09 68.5 2.5 31 244-274 4-37 (184)
134 2a5y_B CED-4; apoptosis; HET: 97.4 0.0044 1.5E-07 65.1 17.2 160 212-415 131-332 (549)
135 1gvn_B Zeta; postsegregational 97.4 0.00026 9E-09 68.4 7.0 34 243-276 33-66 (287)
136 2ze6_A Isopentenyl transferase 97.4 0.00011 3.7E-09 69.7 4.2 32 245-276 3-34 (253)
137 1e6c_A Shikimate kinase; phosp 97.3 9.7E-05 3.3E-09 64.9 3.4 32 244-275 3-34 (173)
138 2cdn_A Adenylate kinase; phosp 97.3 0.00012 4.2E-09 66.3 4.1 32 244-275 21-52 (201)
139 3lw7_A Adenylate kinase relate 97.3 0.00011 3.8E-09 64.1 3.4 29 245-274 3-31 (179)
140 3e1s_A Exodeoxyribonuclease V, 97.3 0.0005 1.7E-08 72.9 9.0 51 211-277 188-241 (574)
141 1tev_A UMP-CMP kinase; ploop, 97.3 0.00011 3.9E-09 65.6 3.5 32 243-274 3-34 (196)
142 1nlf_A Regulatory protein REPA 97.3 0.00046 1.6E-08 66.0 8.0 29 239-267 26-54 (279)
143 3t61_A Gluconokinase; PSI-biol 97.3 0.00016 5.5E-09 65.6 4.1 33 243-275 18-50 (202)
144 2c95_A Adenylate kinase 1; tra 97.3 0.00013 4.4E-09 65.4 3.4 33 243-275 9-41 (196)
145 3be4_A Adenylate kinase; malar 97.3 0.00012 4E-09 67.5 3.0 31 244-274 6-36 (217)
146 2pt5_A Shikimate kinase, SK; a 97.3 0.00015 5.1E-09 63.5 3.5 31 245-275 2-32 (168)
147 2i1q_A DNA repair and recombin 97.3 0.0005 1.7E-08 67.2 7.7 28 239-266 94-121 (322)
148 1qf9_A UMP/CMP kinase, protein 97.2 0.00014 4.8E-09 64.8 3.4 33 243-275 6-38 (194)
149 3cm0_A Adenylate kinase; ATP-b 97.2 0.00012 4.1E-09 65.2 2.8 31 244-274 5-35 (186)
150 1kht_A Adenylate kinase; phosp 97.2 0.00013 4.4E-09 65.1 2.9 30 244-273 4-38 (192)
151 1ly1_A Polynucleotide kinase; 97.2 9.9E-05 3.4E-09 65.1 2.1 29 244-272 3-32 (181)
152 1vt4_I APAF-1 related killer D 97.2 0.0018 6E-08 72.6 12.3 55 212-278 131-191 (1221)
153 3dl0_A Adenylate kinase; phosp 97.2 0.00017 5.8E-09 66.0 3.7 29 246-274 3-31 (216)
154 1zp6_A Hypothetical protein AT 97.2 0.00015 5.2E-09 64.8 3.3 36 241-276 7-42 (191)
155 2bwj_A Adenylate kinase 5; pho 97.2 0.00015 5E-09 65.3 3.1 33 243-275 12-44 (199)
156 1aky_A Adenylate kinase; ATP:A 97.2 0.00019 6.4E-09 66.1 3.8 31 244-274 5-35 (220)
157 2p5t_B PEZT; postsegregational 97.2 0.0004 1.4E-08 65.5 6.2 37 243-279 32-68 (253)
158 1zd8_A GTP:AMP phosphotransfer 97.2 0.00016 5.3E-09 67.0 3.2 32 243-274 7-38 (227)
159 3fb4_A Adenylate kinase; psych 97.2 0.00019 6.4E-09 65.7 3.6 29 246-274 3-31 (216)
160 3lda_A DNA repair protein RAD5 97.2 0.00086 2.9E-08 67.8 8.6 28 239-266 174-201 (400)
161 1knq_A Gluconate kinase; ALFA/ 97.2 0.00024 8.4E-09 62.6 4.0 31 244-274 9-39 (175)
162 1ukz_A Uridylate kinase; trans 97.1 0.00023 8E-09 64.4 3.8 32 244-275 16-47 (203)
163 2vli_A Antibiotic resistance p 97.1 0.00022 7.5E-09 63.2 3.5 29 244-272 6-34 (183)
164 1ak2_A Adenylate kinase isoenz 97.1 0.00025 8.5E-09 66.0 3.9 31 244-274 17-47 (233)
165 3io5_A Recombination and repai 97.1 0.0013 4.4E-08 64.3 8.7 69 239-308 25-125 (333)
166 1zak_A Adenylate kinase; ATP:A 97.1 0.00016 5.4E-09 66.7 2.2 32 243-274 5-36 (222)
167 4eun_A Thermoresistant glucoki 97.1 0.00037 1.3E-08 63.1 4.5 31 243-273 29-59 (200)
168 2pez_A Bifunctional 3'-phospho 97.0 0.0005 1.7E-08 61.0 4.8 34 243-276 5-41 (179)
169 3crm_A TRNA delta(2)-isopenten 97.0 0.00038 1.3E-08 68.3 4.3 34 243-276 5-38 (323)
170 2pbr_A DTMP kinase, thymidylat 97.0 0.00046 1.6E-08 61.5 4.6 30 246-275 3-35 (195)
171 3umf_A Adenylate kinase; rossm 97.0 0.00042 1.4E-08 64.2 4.4 30 243-272 29-58 (217)
172 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00024 8.3E-09 70.5 2.8 51 214-273 4-54 (359)
173 3tlx_A Adenylate kinase 2; str 97.0 0.00034 1.2E-08 65.7 3.7 33 243-275 29-61 (243)
174 1e4v_A Adenylate kinase; trans 97.0 0.00028 9.7E-09 64.6 3.1 29 246-274 3-31 (214)
175 3cmw_A Protein RECA, recombina 97.0 0.0005 1.7E-08 80.6 5.7 70 239-308 30-126 (1706)
176 2xb4_A Adenylate kinase; ATP-b 96.9 0.00039 1.3E-08 64.3 3.4 29 246-274 3-31 (223)
177 3sr0_A Adenylate kinase; phosp 96.9 0.00055 1.9E-08 62.8 4.1 28 246-273 3-30 (206)
178 2jaq_A Deoxyguanosine kinase; 96.9 0.00056 1.9E-08 61.5 3.9 29 245-273 2-30 (205)
179 2if2_A Dephospho-COA kinase; a 96.9 0.00042 1.4E-08 62.7 3.0 30 245-275 3-32 (204)
180 2bbw_A Adenylate kinase 4, AK4 96.9 0.00063 2.2E-08 63.7 4.2 31 243-273 27-57 (246)
181 3nwj_A ATSK2; P loop, shikimat 96.9 0.00053 1.8E-08 64.9 3.6 33 243-275 48-80 (250)
182 2v54_A DTMP kinase, thymidylat 96.9 0.00066 2.3E-08 61.2 4.1 33 244-276 5-38 (204)
183 1g5t_A COB(I)alamin adenosyltr 96.9 0.0028 9.5E-08 57.6 8.1 109 244-376 29-178 (196)
184 2z0h_A DTMP kinase, thymidylat 96.8 0.00082 2.8E-08 60.1 4.6 30 246-275 3-35 (197)
185 1cke_A CK, MSSA, protein (cyti 96.8 0.00068 2.3E-08 62.2 4.1 31 244-274 6-36 (227)
186 1nks_A Adenylate kinase; therm 96.8 0.00042 1.4E-08 61.7 2.4 24 245-268 3-26 (194)
187 3uie_A Adenylyl-sulfate kinase 96.8 0.00099 3.4E-08 60.3 4.9 33 243-275 25-60 (200)
188 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00076 2.6E-08 63.9 4.2 33 244-276 5-40 (260)
189 3ake_A Cytidylate kinase; CMP 96.8 0.00065 2.2E-08 61.3 3.6 31 245-275 4-34 (208)
190 1jjv_A Dephospho-COA kinase; P 96.8 0.00057 2E-08 62.0 3.1 30 245-275 4-33 (206)
191 3r20_A Cytidylate kinase; stru 96.8 0.00091 3.1E-08 62.6 4.3 32 243-274 9-40 (233)
192 2r8r_A Sensor protein; KDPD, P 96.8 0.0011 3.8E-08 61.6 4.7 33 244-276 7-42 (228)
193 2b8t_A Thymidine kinase; deoxy 96.7 0.0033 1.1E-07 58.3 8.0 62 245-306 14-101 (223)
194 2plr_A DTMP kinase, probable t 96.7 0.0011 3.8E-08 59.8 4.7 31 244-274 5-37 (213)
195 2grj_A Dephospho-COA kinase; T 96.7 0.00075 2.6E-08 61.2 3.4 31 245-275 14-44 (192)
196 2fz4_A DNA repair protein RAD2 96.6 0.0078 2.7E-07 56.1 9.8 32 245-276 110-141 (237)
197 1uf9_A TT1252 protein; P-loop, 96.6 0.0009 3.1E-08 60.1 3.2 31 244-275 9-39 (203)
198 4b3f_X DNA-binding protein smu 96.6 0.0033 1.1E-07 67.5 8.1 60 205-279 182-244 (646)
199 2c9o_A RUVB-like 1; hexameric 96.6 0.0079 2.7E-07 61.7 10.5 75 295-395 296-383 (456)
200 2r6a_A DNAB helicase, replicat 96.6 0.0054 1.8E-07 63.0 9.1 37 239-275 199-239 (454)
201 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.3E-08 60.2 3.8 32 244-275 4-35 (219)
202 2qor_A Guanylate kinase; phosp 96.6 0.0013 4.5E-08 59.7 3.9 27 242-268 11-37 (204)
203 2wwf_A Thymidilate kinase, put 96.6 0.0005 1.7E-08 62.4 1.0 28 243-270 10-37 (212)
204 3a8t_A Adenylate isopentenyltr 96.6 0.00099 3.4E-08 65.6 3.1 36 244-279 41-76 (339)
205 1kgd_A CASK, peripheral plasma 96.5 0.0014 4.9E-08 58.2 3.9 26 243-268 5-30 (180)
206 2iut_A DNA translocase FTSK; n 96.5 0.021 7.3E-07 60.0 13.1 73 296-387 345-419 (574)
207 4e22_A Cytidylate kinase; P-lo 96.5 0.0019 6.5E-08 60.9 4.8 30 244-273 28-57 (252)
208 1vht_A Dephospho-COA kinase; s 96.5 0.0013 4.4E-08 60.2 3.4 31 244-275 5-35 (218)
209 3foz_A TRNA delta(2)-isopenten 96.5 0.0018 6.3E-08 63.0 4.3 34 243-276 10-43 (316)
210 2dr3_A UPF0273 protein PH0284; 96.5 0.0019 6.6E-08 59.7 4.4 38 239-276 19-59 (247)
211 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 5.7E-08 60.4 3.8 33 243-275 16-48 (236)
212 1ltq_A Polynucleotide kinase; 96.4 0.0011 3.7E-08 63.8 2.6 31 244-274 3-34 (301)
213 2yvu_A Probable adenylyl-sulfa 96.4 0.0028 9.5E-08 56.4 5.1 33 243-275 13-48 (186)
214 2bdt_A BH3686; alpha-beta prot 96.4 0.0019 6.5E-08 57.6 4.0 25 245-269 4-28 (189)
215 2qmh_A HPR kinase/phosphorylas 96.4 0.0014 4.8E-08 59.7 3.0 33 243-276 34-66 (205)
216 2qt1_A Nicotinamide riboside k 96.4 0.0012 4E-08 60.0 2.4 32 244-275 22-54 (207)
217 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6.1E-08 60.9 3.7 27 244-270 23-49 (252)
218 1nn5_A Similar to deoxythymidy 96.4 0.00081 2.8E-08 61.0 1.2 26 243-268 9-34 (215)
219 1g41_A Heat shock protein HSLU 96.4 0.023 7.7E-07 58.1 12.1 91 290-388 246-346 (444)
220 1kao_A RAP2A; GTP-binding prot 96.4 0.013 4.4E-07 49.9 8.9 23 245-267 5-27 (167)
221 2j41_A Guanylate kinase; GMP, 96.4 0.0017 5.9E-08 58.4 3.3 25 243-267 6-30 (207)
222 3d3q_A TRNA delta(2)-isopenten 96.3 0.002 6.7E-08 63.6 3.6 32 244-275 8-39 (340)
223 1rz3_A Hypothetical protein rb 96.3 0.0066 2.2E-07 54.9 6.9 36 244-279 23-61 (201)
224 2zts_A Putative uncharacterize 96.3 0.0032 1.1E-07 58.2 4.9 38 239-276 26-67 (251)
225 3tau_A Guanylate kinase, GMP k 96.3 0.0021 7.1E-08 58.6 3.4 27 243-269 8-34 (208)
226 3c8u_A Fructokinase; YP_612366 96.3 0.0041 1.4E-07 56.6 5.2 26 243-268 22-47 (208)
227 1qde_A EIF4A, translation init 96.3 0.036 1.2E-06 50.3 11.7 59 206-267 14-76 (224)
228 1m7g_A Adenylylsulfate kinase; 96.2 0.003 1E-07 57.5 4.2 33 243-275 25-61 (211)
229 1z0j_A RAB-22, RAS-related pro 96.2 0.0076 2.6E-07 51.7 6.6 23 245-267 8-30 (170)
230 3zvl_A Bifunctional polynucleo 96.2 0.0015 5E-08 66.5 2.2 32 243-274 258-289 (416)
231 2v3c_C SRP54, signal recogniti 96.2 0.0085 2.9E-07 61.2 7.8 59 217-276 73-135 (432)
232 2px0_A Flagellar biosynthesis 96.2 0.011 3.9E-07 57.1 8.2 59 216-277 80-143 (296)
233 2gxq_A Heat resistant RNA depe 96.2 0.021 7.3E-07 51.1 9.7 25 243-267 38-63 (207)
234 2ius_A DNA translocase FTSK; n 96.2 0.035 1.2E-06 57.7 12.4 41 346-388 332-374 (512)
235 1ex7_A Guanylate kinase; subst 96.2 0.0034 1.1E-07 56.6 4.1 27 244-270 2-28 (186)
236 2f6r_A COA synthase, bifunctio 96.2 0.0022 7.4E-08 61.6 3.0 31 244-275 76-106 (281)
237 3tr0_A Guanylate kinase, GMP k 96.2 0.0031 1.1E-07 56.7 3.9 25 244-268 8-32 (205)
238 3b9q_A Chloroplast SRP recepto 96.2 0.0047 1.6E-07 60.0 5.3 53 215-267 70-124 (302)
239 3exa_A TRNA delta(2)-isopenten 96.1 0.0028 9.5E-08 61.8 3.6 33 244-276 4-36 (322)
240 3kl4_A SRP54, signal recogniti 96.1 0.0064 2.2E-07 62.0 6.4 60 215-275 69-132 (433)
241 3fdi_A Uncharacterized protein 96.1 0.003 1E-07 57.5 3.4 30 244-273 7-36 (201)
242 1t6n_A Probable ATP-dependent 96.1 0.073 2.5E-06 48.2 12.9 60 204-266 12-74 (220)
243 3a00_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 56.2 3.5 25 244-268 2-26 (186)
244 3dm5_A SRP54, signal recogniti 96.0 0.0078 2.7E-07 61.5 6.4 62 215-277 73-137 (443)
245 1r8s_A ADP-ribosylation factor 96.0 0.061 2.1E-06 45.7 11.4 22 246-267 3-24 (164)
246 1ek0_A Protein (GTP-binding pr 96.0 0.0094 3.2E-07 51.0 6.1 23 245-267 5-27 (170)
247 3t1o_A Gliding protein MGLA; G 96.0 0.042 1.4E-06 48.2 10.4 24 244-267 15-38 (198)
248 1lvg_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 56.6 3.3 26 243-268 4-29 (198)
249 2ce2_X GTPase HRAS; signaling 96.0 0.018 6E-07 48.9 7.6 23 245-267 5-27 (166)
250 1w4r_A Thymidine kinase; type 96.0 0.01 3.6E-07 53.7 6.3 32 244-275 21-55 (195)
251 1vma_A Cell division protein F 96.0 0.0089 3E-07 58.1 6.2 59 217-276 79-140 (306)
252 3ney_A 55 kDa erythrocyte memb 95.9 0.0049 1.7E-07 56.1 4.0 26 243-268 19-44 (197)
253 2og2_A Putative signal recogni 95.9 0.0064 2.2E-07 60.5 5.3 53 215-267 127-181 (359)
254 2efe_B Small GTP-binding prote 95.9 0.017 5.7E-07 50.2 7.4 23 244-266 13-35 (181)
255 1u8z_A RAS-related protein RAL 95.9 0.025 8.4E-07 48.1 8.2 24 244-267 5-28 (168)
256 1htw_A HI0065; nucleotide-bind 95.9 0.0057 2E-07 53.5 4.0 25 243-267 33-57 (158)
257 3asz_A Uridine kinase; cytidin 95.9 0.0033 1.1E-07 57.0 2.5 25 244-268 7-31 (211)
258 2v9p_A Replication protein E1; 95.9 0.0048 1.7E-07 60.0 3.8 33 239-271 122-154 (305)
259 1vec_A ATP-dependent RNA helic 95.8 0.23 7.8E-06 44.2 14.8 19 243-261 40-58 (206)
260 4dsu_A GTPase KRAS, isoform 2B 95.8 0.019 6.6E-07 50.1 7.5 23 245-267 6-28 (189)
261 1z6g_A Guanylate kinase; struc 95.8 0.0051 1.7E-07 56.6 3.7 25 243-267 23-47 (218)
262 3thx_B DNA mismatch repair pro 95.8 0.018 6.1E-07 64.1 8.6 100 242-359 672-799 (918)
263 2a9k_A RAS-related protein RAL 95.8 0.029 9.9E-07 48.8 8.5 24 244-267 19-42 (187)
264 1znw_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 55.8 3.7 26 243-268 20-45 (207)
265 3tkl_A RAS-related protein RAB 95.8 0.015 5.1E-07 51.3 6.6 24 244-267 17-40 (196)
266 3q72_A GTP-binding protein RAD 95.8 0.012 4.1E-07 50.4 5.8 21 245-265 4-24 (166)
267 2yhs_A FTSY, cell division pro 95.8 0.007 2.4E-07 62.6 4.9 25 243-267 293-317 (503)
268 1r2q_A RAS-related protein RAB 95.8 0.014 4.8E-07 49.9 6.2 23 244-266 7-29 (170)
269 3bc1_A RAS-related protein RAB 95.8 0.025 8.4E-07 49.5 7.9 23 244-266 12-34 (195)
270 3thx_A DNA mismatch repair pro 95.8 0.025 8.4E-07 63.1 9.4 23 243-265 662-684 (934)
271 1cr0_A DNA primase/helicase; R 95.7 0.0047 1.6E-07 59.3 3.2 29 239-267 31-59 (296)
272 1hv8_A Putative ATP-dependent 95.7 0.07 2.4E-06 51.7 11.8 58 206-266 6-67 (367)
273 2bov_A RAla, RAS-related prote 95.7 0.035 1.2E-06 49.3 8.8 24 244-267 15-38 (206)
274 3eph_A TRNA isopentenyltransfe 95.7 0.0049 1.7E-07 62.1 3.4 32 244-275 3-34 (409)
275 3con_A GTPase NRAS; structural 95.7 0.023 7.7E-07 50.0 7.5 23 245-267 23-45 (190)
276 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.043 1.5E-06 47.3 9.1 24 244-267 8-31 (177)
277 1z0f_A RAB14, member RAS oncog 95.7 0.02 6.8E-07 49.5 6.8 24 244-267 16-39 (179)
278 1c1y_A RAS-related protein RAP 95.7 0.023 7.9E-07 48.4 7.2 22 245-266 5-26 (167)
279 2oil_A CATX-8, RAS-related pro 95.7 0.014 4.8E-07 51.6 6.0 24 244-267 26-49 (193)
280 2nzj_A GTP-binding protein REM 95.7 0.021 7.3E-07 49.1 7.0 23 244-266 5-27 (175)
281 1zu4_A FTSY; GTPase, signal re 95.7 0.013 4.5E-07 57.3 6.2 61 217-277 74-142 (320)
282 3gmt_A Adenylate kinase; ssgci 95.7 0.0056 1.9E-07 57.0 3.3 29 246-274 11-39 (230)
283 1x6v_B Bifunctional 3'-phospho 95.7 0.0082 2.8E-07 64.0 4.9 33 243-275 52-87 (630)
284 2xau_A PRE-mRNA-splicing facto 95.7 0.033 1.1E-06 61.0 9.9 23 244-266 110-132 (773)
285 1s96_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 56.0 3.7 27 243-269 16-42 (219)
286 1x3s_A RAS-related protein RAB 95.6 0.031 1E-06 49.1 8.0 24 244-267 16-39 (195)
287 2eyu_A Twitching motility prot 95.6 0.0076 2.6E-07 57.2 4.1 25 243-267 25-49 (261)
288 3bh0_A DNAB-like replicative h 95.6 0.011 3.8E-07 57.6 5.2 38 239-276 64-104 (315)
289 2gk6_A Regulator of nonsense t 95.5 0.01 3.4E-07 63.5 5.2 33 244-276 196-232 (624)
290 1p9r_A General secretion pathw 95.5 0.019 6.5E-07 58.3 6.9 50 205-268 143-192 (418)
291 2pl3_A Probable ATP-dependent 95.5 0.043 1.5E-06 50.4 8.7 54 204-260 23-79 (236)
292 4eaq_A DTMP kinase, thymidylat 95.5 0.0072 2.5E-07 56.1 3.3 30 244-273 27-58 (229)
293 3e70_C DPA, signal recognition 95.5 0.018 6.3E-07 56.4 6.4 52 216-267 98-153 (328)
294 4gp7_A Metallophosphoesterase; 95.5 0.0055 1.9E-07 54.0 2.4 20 243-262 9-28 (171)
295 1odf_A YGR205W, hypothetical 3 95.4 0.0091 3.1E-07 57.6 3.9 27 243-269 31-57 (290)
296 1gtv_A TMK, thymidylate kinase 95.4 0.0029 1E-07 57.3 0.4 25 245-269 2-26 (214)
297 2atv_A RERG, RAS-like estrogen 95.4 0.04 1.4E-06 48.8 7.9 24 243-266 28-51 (196)
298 3dz8_A RAS-related protein RAB 95.4 0.019 6.5E-07 50.8 5.7 23 245-267 25-47 (191)
299 1c9k_A COBU, adenosylcobinamid 95.4 0.0086 3E-07 53.6 3.3 33 246-279 2-34 (180)
300 3hdt_A Putative kinase; struct 95.4 0.0075 2.6E-07 55.9 3.0 30 244-273 15-44 (223)
301 2erx_A GTP-binding protein DI- 95.3 0.017 5.7E-07 49.5 4.9 22 245-266 5-26 (172)
302 3ice_A Transcription terminati 95.3 0.024 8.2E-07 56.8 6.6 66 243-308 174-275 (422)
303 2i3b_A HCR-ntpase, human cance 95.3 0.0088 3E-07 53.9 3.2 23 245-267 3-25 (189)
304 3clv_A RAB5 protein, putative; 95.3 0.036 1.2E-06 48.7 7.3 23 244-266 8-30 (208)
305 2ewv_A Twitching motility prot 95.3 0.011 3.7E-07 59.1 4.1 28 241-268 134-161 (372)
306 1zd9_A ADP-ribosylation factor 95.3 0.072 2.4E-06 46.9 9.2 23 245-267 24-46 (188)
307 2fn4_A P23, RAS-related protei 95.3 0.045 1.5E-06 47.3 7.6 23 244-266 10-32 (181)
308 3jvv_A Twitching mobility prot 95.3 0.0093 3.2E-07 59.3 3.5 23 245-267 125-147 (356)
309 3kkq_A RAS-related protein M-R 95.2 0.028 9.7E-07 48.9 6.3 24 244-267 19-42 (183)
310 1wb9_A DNA mismatch repair pro 95.2 0.043 1.5E-06 60.2 8.9 24 243-266 607-630 (800)
311 2j37_W Signal recognition part 95.2 0.021 7.3E-07 59.3 6.1 59 216-276 74-137 (504)
312 1zbd_A Rabphilin-3A; G protein 95.1 0.031 1.1E-06 49.7 6.3 24 244-267 9-32 (203)
313 2jeo_A Uridine-cytidine kinase 95.1 0.012 4.1E-07 54.9 3.6 26 245-270 27-52 (245)
314 2hxs_A RAB-26, RAS-related pro 95.1 0.026 8.9E-07 48.8 5.6 22 245-266 8-29 (178)
315 3oes_A GTPase rhebl1; small GT 95.1 0.03 1E-06 50.0 6.0 24 244-267 25-48 (201)
316 3tqc_A Pantothenate kinase; bi 95.1 0.026 8.8E-07 55.2 6.0 24 245-268 94-117 (321)
317 2hup_A RAS-related protein RAB 95.1 0.041 1.4E-06 49.2 6.9 23 244-266 30-52 (201)
318 2wjy_A Regulator of nonsense t 95.1 0.017 5.9E-07 63.5 5.2 24 244-267 372-395 (800)
319 3tqf_A HPR(Ser) kinase; transf 95.1 0.01 3.5E-07 52.8 2.7 29 243-272 16-44 (181)
320 2b6h_A ADP-ribosylation factor 95.1 0.063 2.1E-06 47.6 8.1 23 243-265 29-51 (192)
321 1z06_A RAS-related protein RAB 95.1 0.051 1.8E-06 47.7 7.5 23 244-266 21-43 (189)
322 3lnc_A Guanylate kinase, GMP k 95.0 0.0066 2.3E-07 56.0 1.6 26 243-268 27-53 (231)
323 2axn_A 6-phosphofructo-2-kinas 95.0 0.014 4.6E-07 61.1 4.0 33 243-275 35-70 (520)
324 1a7j_A Phosphoribulokinase; tr 95.0 0.0051 1.7E-07 59.3 0.7 37 244-280 6-45 (290)
325 1np6_A Molybdopterin-guanine d 95.0 0.014 4.8E-07 51.9 3.5 25 243-267 6-30 (174)
326 2ged_A SR-beta, signal recogni 95.0 0.022 7.5E-07 50.2 4.9 25 243-267 48-72 (193)
327 2fg5_A RAB-22B, RAS-related pr 95.0 0.025 8.4E-07 50.1 5.2 24 244-267 24-47 (192)
328 1fzq_A ADP-ribosylation factor 95.0 0.14 4.7E-06 44.8 10.1 23 244-266 17-39 (181)
329 2f7s_A C25KG, RAS-related prot 95.0 0.054 1.8E-06 48.8 7.6 22 245-266 27-48 (217)
330 3iuy_A Probable ATP-dependent 95.0 0.079 2.7E-06 48.2 8.8 53 205-260 18-74 (228)
331 3pey_A ATP-dependent RNA helic 95.0 0.3 1E-05 47.7 13.6 54 206-262 5-63 (395)
332 2q6t_A DNAB replication FORK h 94.9 0.02 6.8E-07 58.5 4.9 38 239-276 196-237 (444)
333 1rj9_A FTSY, signal recognitio 94.9 0.016 5.5E-07 56.2 3.9 25 243-267 102-126 (304)
334 2xxa_A Signal recognition part 94.9 0.029 1E-06 57.2 5.9 62 217-278 74-139 (433)
335 1xjc_A MOBB protein homolog; s 94.9 0.026 9E-07 49.9 4.9 32 244-275 5-39 (169)
336 3kw6_A 26S protease regulatory 94.9 0.022 7.4E-07 43.4 3.8 66 376-441 1-74 (78)
337 2oap_1 GSPE-2, type II secreti 94.8 0.0089 3.1E-07 62.3 2.0 32 243-274 260-293 (511)
338 3fe2_A Probable ATP-dependent 94.8 0.35 1.2E-05 44.4 12.8 53 205-260 28-83 (242)
339 2p5s_A RAS and EF-hand domain 94.7 0.033 1.1E-06 49.6 5.3 24 244-267 29-52 (199)
340 1zj6_A ADP-ribosylation factor 94.7 0.092 3.1E-06 46.0 8.2 23 243-265 16-38 (187)
341 4dkx_A RAS-related protein RAB 94.7 0.046 1.6E-06 50.1 6.4 22 245-266 15-36 (216)
342 4f4c_A Multidrug resistance pr 94.7 0.1 3.5E-06 60.5 10.6 29 241-269 442-470 (1321)
343 3aez_A Pantothenate kinase; tr 94.7 0.017 5.9E-07 56.2 3.6 26 243-268 90-115 (312)
344 2ocp_A DGK, deoxyguanosine kin 94.7 0.018 6.1E-07 53.4 3.6 25 244-268 3-27 (241)
345 2bcg_Y Protein YP2, GTP-bindin 94.7 0.026 8.8E-07 50.5 4.4 24 244-267 9-32 (206)
346 2ffh_A Protein (FFH); SRP54, s 94.6 0.053 1.8E-06 55.0 7.1 59 216-276 73-134 (425)
347 3kta_A Chromosome segregation 94.6 0.017 5.7E-07 50.9 3.0 25 245-269 28-52 (182)
348 4edh_A DTMP kinase, thymidylat 94.6 0.027 9.2E-07 51.7 4.5 31 244-274 7-40 (213)
349 2fu5_C RAS-related protein RAB 94.6 0.022 7.7E-07 49.6 3.8 23 244-266 9-31 (183)
350 3ly5_A ATP-dependent RNA helic 94.6 0.41 1.4E-05 44.8 12.9 18 244-261 92-109 (262)
351 2bme_A RAB4A, RAS-related prot 94.6 0.023 7.8E-07 49.7 3.9 24 244-267 11-34 (186)
352 2xzl_A ATP-dependent helicase 94.6 0.023 7.8E-07 62.5 4.6 35 244-278 376-414 (802)
353 1j8m_F SRP54, signal recogniti 94.6 0.04 1.4E-06 53.2 5.8 61 216-278 71-136 (297)
354 1m8p_A Sulfate adenylyltransfe 94.6 0.019 6.6E-07 60.6 3.9 33 244-276 397-433 (573)
355 1sq5_A Pantothenate kinase; P- 94.6 0.016 5.6E-07 56.1 3.1 36 244-279 81-121 (308)
356 1p5z_B DCK, deoxycytidine kina 94.6 0.0085 2.9E-07 56.5 1.0 29 244-272 25-54 (263)
357 2f9l_A RAB11B, member RAS onco 94.5 0.018 6.3E-07 51.4 3.1 23 245-267 7-29 (199)
358 1w36_D RECD, exodeoxyribonucle 94.5 0.025 8.4E-07 60.3 4.6 25 243-267 164-188 (608)
359 2dyk_A GTP-binding protein; GT 94.5 0.02 6.8E-07 48.6 3.2 23 245-267 3-25 (161)
360 4a1f_A DNAB helicase, replicat 94.5 0.028 9.5E-07 55.4 4.6 38 239-276 42-82 (338)
361 2zj8_A DNA helicase, putative 94.5 0.15 5.2E-06 55.1 10.9 18 243-260 39-56 (720)
362 2h57_A ADP-ribosylation factor 94.5 0.014 4.9E-07 51.4 2.3 23 245-267 23-45 (190)
363 3tif_A Uncharacterized ABC tra 94.5 0.015 5E-07 54.3 2.5 27 243-269 31-57 (235)
364 2gf0_A GTP-binding protein DI- 94.5 0.036 1.2E-06 48.9 4.9 23 244-266 9-31 (199)
365 1sky_E F1-ATPase, F1-ATP synth 94.5 0.038 1.3E-06 56.7 5.7 23 245-267 153-175 (473)
366 3v9p_A DTMP kinase, thymidylat 94.4 0.025 8.5E-07 52.5 3.8 23 245-267 27-49 (227)
367 1g8f_A Sulfate adenylyltransfe 94.4 0.041 1.4E-06 57.2 5.8 26 244-269 396-421 (511)
368 1oix_A RAS-related protein RAB 94.4 0.018 6.2E-07 51.2 2.7 23 245-267 31-53 (191)
369 2cbz_A Multidrug resistance-as 94.4 0.015 5.3E-07 54.2 2.3 25 243-267 31-55 (237)
370 3llu_A RAS-related GTP-binding 94.4 0.065 2.2E-06 47.6 6.4 24 244-267 21-44 (196)
371 3b85_A Phosphate starvation-in 94.4 0.018 6.2E-07 52.6 2.7 23 244-266 23-45 (208)
372 2ew1_A RAS-related protein RAB 94.3 0.03 1E-06 50.4 4.1 24 244-267 27-50 (201)
373 2fh5_B SR-beta, signal recogni 94.3 0.04 1.4E-06 49.5 5.0 24 244-267 8-31 (214)
374 1z2a_A RAS-related protein RAB 94.3 0.022 7.6E-07 48.6 3.0 24 244-267 6-29 (168)
375 1nrj_B SR-beta, signal recogni 94.3 0.026 8.8E-07 51.0 3.6 25 243-267 12-36 (218)
376 2o8b_B DNA mismatch repair pro 94.3 0.13 4.5E-06 57.9 10.0 22 243-264 789-810 (1022)
377 4i1u_A Dephospho-COA kinase; s 94.3 0.025 8.5E-07 51.9 3.5 31 245-276 11-41 (210)
378 2pcj_A ABC transporter, lipopr 94.3 0.013 4.6E-07 54.1 1.6 27 243-269 30-56 (224)
379 3bgw_A DNAB-like replicative h 94.3 0.034 1.1E-06 56.9 4.7 38 239-276 193-233 (444)
380 2il1_A RAB12; G-protein, GDP, 94.2 0.029 9.9E-07 49.7 3.7 22 245-266 28-49 (192)
381 1b0u_A Histidine permease; ABC 94.2 0.018 6.3E-07 54.5 2.5 27 243-269 32-58 (262)
382 1ewq_A DNA mismatch repair pro 94.2 0.079 2.7E-06 57.8 7.8 25 243-267 576-600 (765)
383 2z0m_A 337AA long hypothetical 94.2 0.26 8.9E-06 47.0 10.8 31 244-274 32-62 (337)
384 2onk_A Molybdate/tungstate ABC 94.2 0.022 7.5E-07 53.3 3.0 26 244-269 25-50 (240)
385 1sgw_A Putative ABC transporte 94.2 0.017 6E-07 53.0 2.2 27 243-269 35-61 (214)
386 1lw7_A Transcriptional regulat 94.2 0.023 7.8E-07 56.4 3.1 28 243-270 170-197 (365)
387 1bif_A 6-phosphofructo-2-kinas 94.2 0.014 4.6E-07 60.2 1.5 26 243-268 39-64 (469)
388 1mv5_A LMRA, multidrug resista 94.1 0.019 6.4E-07 53.8 2.3 26 243-268 28-53 (243)
389 2pze_A Cystic fibrosis transme 94.1 0.018 6.1E-07 53.4 2.1 26 243-268 34-59 (229)
390 2wji_A Ferrous iron transport 94.1 0.026 8.8E-07 48.7 3.0 22 245-266 5-26 (165)
391 1z08_A RAS-related protein RAB 94.1 0.028 9.7E-07 48.1 3.2 24 244-267 7-30 (170)
392 3tmk_A Thymidylate kinase; pho 94.1 0.035 1.2E-06 51.1 3.9 28 244-271 6-33 (216)
393 2olj_A Amino acid ABC transpor 94.0 0.021 7.3E-07 54.2 2.5 27 243-269 50-76 (263)
394 1ky3_A GTP-binding protein YPT 94.0 0.029 1E-06 48.5 3.2 24 244-267 9-32 (182)
395 1g6h_A High-affinity branched- 94.0 0.019 6.4E-07 54.2 2.1 25 244-268 34-58 (257)
396 1ls1_A Signal recognition part 94.0 0.096 3.3E-06 50.4 7.1 34 243-276 98-134 (295)
397 2wsm_A Hydrogenase expression/ 94.0 0.046 1.6E-06 49.4 4.6 26 243-268 30-55 (221)
398 2ixe_A Antigen peptide transpo 94.0 0.022 7.5E-07 54.3 2.5 26 243-268 45-70 (271)
399 2zu0_C Probable ATP-dependent 94.0 0.025 8.6E-07 53.7 2.9 25 243-267 46-70 (267)
400 1q57_A DNA primase/helicase; d 94.0 0.032 1.1E-06 57.8 3.9 38 239-276 238-279 (503)
401 1g16_A RAS-related protein SEC 93.9 0.026 8.9E-07 48.3 2.7 23 244-266 4-26 (170)
402 3sop_A Neuronal-specific septi 93.9 0.024 8.1E-07 54.0 2.6 25 245-269 4-28 (270)
403 2ghi_A Transport protein; mult 93.9 0.022 7.5E-07 53.9 2.3 26 243-268 46-71 (260)
404 2ff7_A Alpha-hemolysin translo 93.9 0.02 7E-07 53.7 2.1 26 243-268 35-60 (247)
405 2zej_A Dardarin, leucine-rich 93.9 0.024 8.3E-07 49.8 2.5 22 245-266 4-25 (184)
406 2www_A Methylmalonic aciduria 93.9 0.08 2.7E-06 52.2 6.5 24 244-267 75-98 (349)
407 2gza_A Type IV secretion syste 93.8 0.018 6.2E-07 57.2 1.7 26 243-268 175-200 (361)
408 2d2e_A SUFC protein; ABC-ATPas 93.8 0.024 8.2E-07 53.3 2.5 24 243-266 29-52 (250)
409 1vpl_A ABC transporter, ATP-bi 93.8 0.025 8.5E-07 53.5 2.5 26 243-268 41-66 (256)
410 3gfo_A Cobalt import ATP-bindi 93.8 0.022 7.5E-07 54.5 2.1 25 244-268 35-59 (275)
411 1ji0_A ABC transporter; ATP bi 93.8 0.022 7.5E-07 53.2 2.1 26 244-269 33-58 (240)
412 3fvq_A Fe(3+) IONS import ATP- 93.8 0.024 8.3E-07 56.3 2.5 25 244-268 31-55 (359)
413 3p32_A Probable GTPase RV1496/ 93.8 0.048 1.6E-06 53.9 4.7 32 244-275 80-114 (355)
414 2it1_A 362AA long hypothetical 93.8 0.029 1E-06 55.8 3.0 25 244-268 30-54 (362)
415 2qi9_C Vitamin B12 import ATP- 93.8 0.02 6.8E-07 53.9 1.7 27 243-269 26-52 (249)
416 2wjg_A FEOB, ferrous iron tran 93.7 0.029 9.8E-07 49.2 2.7 23 244-266 8-30 (188)
417 1upt_A ARL1, ADP-ribosylation 93.7 0.035 1.2E-06 47.5 3.2 23 244-266 8-30 (171)
418 3q85_A GTP-binding protein REM 93.7 0.033 1.1E-06 47.7 3.0 21 245-265 4-24 (169)
419 2yyz_A Sugar ABC transporter, 93.7 0.03 1E-06 55.6 3.0 25 244-268 30-54 (359)
420 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.034 1.1E-06 47.9 2.9 23 245-267 25-47 (149)
421 1v43_A Sugar-binding transport 93.7 0.031 1.1E-06 55.7 3.0 25 244-268 38-62 (372)
422 2ihy_A ABC transporter, ATP-bi 93.6 0.024 8.3E-07 54.2 2.1 25 244-268 48-72 (279)
423 2yz2_A Putative ABC transporte 93.6 0.027 9.3E-07 53.4 2.5 26 243-268 33-58 (266)
424 3rlf_A Maltose/maltodextrin im 93.6 0.032 1.1E-06 55.9 3.0 25 244-268 30-54 (381)
425 1z47_A CYSA, putative ABC-tran 93.6 0.028 9.6E-07 55.7 2.6 25 244-268 42-66 (355)
426 2nq2_C Hypothetical ABC transp 93.6 0.025 8.4E-07 53.4 2.1 26 243-268 31-56 (253)
427 2y8e_A RAB-protein 6, GH09086P 93.6 0.032 1.1E-06 48.1 2.7 22 245-266 16-37 (179)
428 3lv8_A DTMP kinase, thymidylat 93.6 0.034 1.2E-06 51.9 3.0 24 244-267 28-51 (236)
429 1tf7_A KAIC; homohexamer, hexa 93.5 0.029 9.9E-07 58.6 2.7 29 239-267 277-305 (525)
430 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.025 8.5E-07 55.5 2.0 63 243-305 171-251 (330)
431 2lkc_A Translation initiation 93.5 0.041 1.4E-06 47.5 3.2 24 243-266 8-31 (178)
432 3cr8_A Sulfate adenylyltranfer 93.5 0.021 7.3E-07 60.0 1.5 25 244-268 370-394 (552)
433 1g29_1 MALK, maltose transport 93.4 0.031 1.1E-06 55.8 2.6 25 244-268 30-54 (372)
434 4g1u_C Hemin import ATP-bindin 93.4 0.03 1E-06 53.2 2.3 26 243-268 37-62 (266)
435 4f4c_A Multidrug resistance pr 93.4 0.045 1.5E-06 63.5 4.2 27 242-268 1104-1130(1321)
436 1svi_A GTP-binding protein YSX 93.3 0.023 7.7E-07 50.2 1.3 24 243-266 23-46 (195)
437 3l0o_A Transcription terminati 93.3 0.1 3.5E-06 52.2 6.1 63 246-308 178-276 (427)
438 2g6b_A RAS-related protein RAB 93.3 0.045 1.5E-06 47.3 3.2 24 244-267 11-34 (180)
439 1m7b_A RND3/RHOE small GTP-bin 93.3 0.037 1.3E-06 48.5 2.7 23 244-266 8-30 (184)
440 2obl_A ESCN; ATPase, hydrolase 93.3 0.057 2E-06 53.3 4.3 29 244-272 72-100 (347)
441 2gf9_A RAS-related protein RAB 93.3 0.045 1.5E-06 48.1 3.2 24 244-267 23-46 (189)
442 3d31_A Sulfate/molybdate ABC t 93.3 0.027 9.3E-07 55.7 1.9 25 244-268 27-51 (348)
443 1yrb_A ATP(GTP)binding protein 93.3 0.073 2.5E-06 49.5 4.8 33 244-276 15-49 (262)
444 3ld9_A DTMP kinase, thymidylat 93.3 0.044 1.5E-06 50.7 3.2 26 244-269 22-47 (223)
445 3t34_A Dynamin-related protein 93.3 0.34 1.2E-05 47.7 9.9 22 245-266 36-57 (360)
446 2f1r_A Molybdopterin-guanine d 93.3 0.02 6.9E-07 50.7 0.8 25 244-268 3-27 (171)
447 2qm8_A GTPase/ATPase; G protei 93.3 0.048 1.6E-06 53.6 3.6 24 244-267 56-79 (337)
448 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.046 1.6E-06 47.5 3.2 22 245-266 7-28 (186)
449 3b1v_A Ferrous iron uptake tra 93.3 0.12 4E-06 49.2 6.2 23 244-266 4-26 (272)
450 3tw8_B RAS-related protein RAB 93.2 0.043 1.5E-06 47.4 2.9 23 244-266 10-32 (181)
451 1tf7_A KAIC; homohexamer, hexa 93.2 0.034 1.2E-06 58.0 2.6 28 240-267 36-65 (525)
452 1tq4_A IIGP1, interferon-induc 93.2 0.064 2.2E-06 54.3 4.4 23 245-267 71-93 (413)
453 4tmk_A Protein (thymidylate ki 93.2 0.04 1.4E-06 50.5 2.7 24 244-267 4-27 (213)
454 2gj8_A MNME, tRNA modification 93.2 0.034 1.2E-06 48.5 2.1 22 245-266 6-27 (172)
455 3c5c_A RAS-like protein 12; GD 93.1 0.05 1.7E-06 48.0 3.2 23 245-267 23-45 (187)
456 3iby_A Ferrous iron transport 93.1 0.099 3.4E-06 49.1 5.5 22 245-266 3-24 (256)
457 2pjz_A Hypothetical protein ST 93.1 0.032 1.1E-06 52.9 2.0 25 243-267 30-54 (263)
458 3bwd_D RAC-like GTP-binding pr 93.1 0.051 1.7E-06 47.1 3.2 24 244-267 9-32 (182)
459 2dpy_A FLII, flagellum-specifi 93.1 0.072 2.5E-06 54.3 4.7 29 244-272 158-186 (438)
460 2iwr_A Centaurin gamma 1; ANK 93.0 0.039 1.3E-06 47.8 2.3 22 245-266 9-30 (178)
461 3ihw_A Centg3; RAS, centaurin, 93.0 0.053 1.8E-06 47.8 3.2 23 245-267 22-44 (184)
462 2krk_A 26S protease regulatory 93.0 0.05 1.7E-06 42.4 2.6 68 374-441 7-82 (86)
463 1vg8_A RAS-related protein RAB 93.0 0.053 1.8E-06 48.2 3.2 24 244-267 9-32 (207)
464 4djt_A GTP-binding nuclear pro 93.0 0.022 7.5E-07 51.4 0.6 22 244-265 12-33 (218)
465 1m2o_B GTP-binding protein SAR 93.0 0.045 1.5E-06 48.5 2.7 23 244-266 24-46 (190)
466 2a5j_A RAS-related protein RAB 93.0 0.053 1.8E-06 47.8 3.1 23 245-267 23-45 (191)
467 4ag6_A VIRB4 ATPase, type IV s 92.9 0.1 3.5E-06 52.0 5.6 34 243-276 35-71 (392)
468 4hlc_A DTMP kinase, thymidylat 92.9 0.084 2.9E-06 48.0 4.5 30 245-274 4-35 (205)
469 2hf9_A Probable hydrogenase ni 92.9 0.086 3E-06 47.8 4.5 24 244-267 39-62 (226)
470 1oxx_K GLCV, glucose, ABC tran 92.9 0.027 9.3E-07 55.8 1.1 25 244-268 32-56 (353)
471 3reg_A RHO-like small GTPase; 92.9 0.057 1.9E-06 47.7 3.2 24 244-267 24-47 (194)
472 2bbs_A Cystic fibrosis transme 92.9 0.032 1.1E-06 53.8 1.5 26 243-268 64-89 (290)
473 3cph_A RAS-related protein SEC 92.9 0.056 1.9E-06 48.3 3.2 23 244-266 21-43 (213)
474 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.05 1.7E-06 55.9 3.1 27 241-267 136-162 (460)
475 2cxx_A Probable GTP-binding pr 92.8 0.043 1.5E-06 48.0 2.3 22 245-266 3-24 (190)
476 1ko7_A HPR kinase/phosphatase; 92.8 0.061 2.1E-06 52.3 3.5 29 243-272 144-172 (314)
477 1pui_A ENGB, probable GTP-bind 92.8 0.025 8.6E-07 50.6 0.7 25 243-267 26-50 (210)
478 3t5g_A GTP-binding protein RHE 92.7 0.051 1.8E-06 47.2 2.7 23 244-266 7-29 (181)
479 2gks_A Bifunctional SAT/APS ki 92.7 0.12 4E-06 54.3 5.9 32 244-275 373-407 (546)
480 3gd7_A Fusion complex of cysti 92.6 0.049 1.7E-06 54.7 2.7 25 243-267 47-71 (390)
481 1ksh_A ARF-like protein 2; sma 92.6 0.045 1.5E-06 47.8 2.1 25 243-267 18-42 (186)
482 3gj0_A GTP-binding nuclear pro 92.6 0.045 1.5E-06 49.6 2.2 23 245-267 17-40 (221)
483 3pqc_A Probable GTP-binding pr 92.6 0.049 1.7E-06 47.7 2.3 24 244-267 24-47 (195)
484 3k53_A Ferrous iron transport 92.5 0.046 1.6E-06 51.7 2.1 24 244-267 4-27 (271)
485 3lxx_A GTPase IMAP family memb 92.5 0.056 1.9E-06 49.8 2.7 24 244-267 30-53 (239)
486 3nh6_A ATP-binding cassette SU 92.4 0.035 1.2E-06 53.9 1.2 27 242-268 79-105 (306)
487 3tui_C Methionine import ATP-b 92.4 0.066 2.3E-06 53.2 3.2 26 243-268 54-79 (366)
488 2cjw_A GTP-binding protein GEM 92.4 0.076 2.6E-06 47.2 3.3 22 245-266 8-29 (192)
489 2db3_A ATP-dependent RNA helic 92.4 2.3 8E-05 42.6 14.9 51 206-259 56-109 (434)
490 1qhl_A Protein (cell division 92.4 0.022 7.7E-07 52.8 -0.2 23 246-268 30-52 (227)
491 2rcn_A Probable GTPase ENGC; Y 92.4 0.064 2.2E-06 53.2 3.1 25 244-268 216-240 (358)
492 1gwn_A RHO-related GTP-binding 92.4 0.06 2.1E-06 48.5 2.7 23 244-266 29-51 (205)
493 1u0l_A Probable GTPase ENGC; p 92.3 0.051 1.8E-06 52.4 2.2 26 244-269 170-195 (301)
494 2qag_B Septin-6, protein NEDD5 92.3 0.063 2.2E-06 54.5 3.0 22 246-267 45-66 (427)
495 2vp4_A Deoxynucleoside kinase; 92.3 0.069 2.4E-06 49.1 3.0 28 245-273 22-49 (230)
496 1moz_A ARL1, ADP-ribosylation 92.3 0.064 2.2E-06 46.5 2.7 23 243-265 18-40 (183)
497 1knx_A Probable HPR(Ser) kinas 92.3 0.059 2E-06 52.4 2.6 30 243-273 147-176 (312)
498 3hjn_A DTMP kinase, thymidylat 92.2 0.12 4.1E-06 46.6 4.5 29 246-274 3-34 (197)
499 2atx_A Small GTP binding prote 92.1 0.071 2.4E-06 46.9 2.7 23 245-267 20-42 (194)
500 2qe7_A ATP synthase subunit al 92.0 0.34 1.2E-05 49.9 8.1 61 246-306 165-231 (502)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-40 Score=332.84 Aligned_cols=214 Identities=24% Similarity=0.325 Sum_probs=182.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+..+|++++|.+++|++|.+.+..++.+|+.|++.|+++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988853
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
+..++.+|..+ .+||||||||||++++.+...... .......++++||+.|||+.+ ..+++||+||
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~----~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaAT 294 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG----GDSEVQRTMLELLNQLDGFET--SKNIKIIMAT 294 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG----GGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC----CcHHHHHHHHHHHHhhhccCC--CCCeEEEecc
Confidence 45677776655 589999999999998755433221 234556789999999999976 4679999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|+|+.|||||+||||||++|++|.|+.++|++||+.++......-.-+++.+++.. ++|+|||..++.
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999765433222456666654 699999988774
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=330.52 Aligned_cols=215 Identities=25% Similarity=0.298 Sum_probs=181.6
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc
Q 013128 201 VLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ 280 (449)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (449)
...+..+|++|+|.+++|++|.+.+..++.+++.|.+.|+++++|||||||||||||++|+|+|++++.+++.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred C------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 281 S------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 281 ~------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
+ +..++.+|..+ .+||||||||||+++..+...... .......++++||+.|||..+ .++++||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~----~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaA 327 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG----GEREIQRTMLELLNQLDGFDD--RGDVKVIMA 327 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS----SCCHHHHHHHHHHHHHHHCCC--SSSEEEEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC----ccHHHHHHHHHHHHHhhCcCC--CCCEEEEEe
Confidence 3 34566666554 589999999999998755433221 234556789999999999865 467999999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
||+++.|||||+||||||++|+||+|+.++|++||+.++......-.-+++.+++.. ++|+|||..++.
T Consensus 328 TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 328 TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999764332222456666554 699999988774
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-39 Score=330.11 Aligned_cols=214 Identities=25% Similarity=0.307 Sum_probs=181.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+..+|++|+|.+++|+.|.+.+..++.+++.|.+.|+++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999988853
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...++.+|..+ .+||||||||||+++..+...+.. .......++++||+.|||+.+ .++++||+||
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~----~~~~~~~~l~~lL~~lDg~~~--~~~vivI~AT 327 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS----ADREIQRTLMELLTQMDGFDN--LGQTKIIMAT 327 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS----STTHHHHHHHHHHHHHHSSSC--TTSSEEEEEE
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC----cchHHHHHHHHHHHHhhcccC--CCCeEEEEec
Confidence 34456665544 589999999999998755333221 234456789999999999876 3679999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|+|+.|||||+||||||.+|+||+|+.++|++||+.++......-.-++..+++.+ ++|+|||..++.
T Consensus 328 Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998754332222456666654 699999988774
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-39 Score=332.34 Aligned_cols=234 Identities=21% Similarity=0.254 Sum_probs=188.8
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc
Q 013128 201 VLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ 280 (449)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (449)
...++.+|++|+|.+++|++|.+.+..|+.+++.|++.|+++++|||||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred C------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 281 S------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 281 ~------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
+ ...++.+|..+ ..||||||||||+++..+...... .......+++.||+.|||+.+ .++++||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~----~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaa 326 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS----GDREVQRTMLELLNQLDGFSS--DDRVKVLAA 326 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGG----TTHHHHHHHHHHHHHHTTSCS--SCSSEEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCC----CchHHHHHHHHHHHHhhccCC--CCCEEEEEe
Confidence 3 35566666544 489999999999998754332211 224456789999999999976 467999999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHhc-------CC
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELMK-------ST 424 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~~ 424 (449)
||+|+.|||||+||||||++|++|+|+.++|++||+.++......-.-+++.+++.. ++|+|||..++.. ..
T Consensus 327 TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999998754322112345555554 6999999887742 12
Q ss_pred CHHHHHHHHHHHHHHH
Q 013128 425 NAEVSLNGLVKFLHAK 440 (449)
Q Consensus 425 ~~~~al~~l~~~l~~~ 440 (449)
......+.+.+++++.
T Consensus 407 ~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 407 QSSVKHEDFVEGISEV 422 (434)
T ss_dssp CSSBCHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHH
Confidence 2223345566665543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=324.49 Aligned_cols=214 Identities=23% Similarity=0.260 Sum_probs=180.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+..+|++|+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||++|+|+|++++.+++.++++.+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999988854
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
+..++.+|..+ .+||||||||||.++..+...... .......+++.||+.|||... .++++||+||
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~----~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaAT 355 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG----GDNEVQRTMLELITQLDGFDP--RGNIKVMFAT 355 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG----GGGHHHHHHHHHHHHHHSSCC--TTTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC----ccHHHHHHHHHHHHHhhccCC--CCcEEEEeCC
Confidence 35566666654 589999999999998755433221 234556789999999999866 4679999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|+|+.|||||+||||||++|+||.|+.++|++||+.++......-.-+++.+++.. ++|+|||..++.
T Consensus 356 Nrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 356 NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp SCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999864332222345555543 699999988774
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=324.24 Aligned_cols=214 Identities=26% Similarity=0.341 Sum_probs=180.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+..+|++++|.+++|+.|.+.+..++.+++.|.++|+++++|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...++.+|..+ ..||||||||+|+++..+...... .......++++||+.|||+.+. .+++||+||
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~----~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aT 318 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG----SDREVQRILIELLTQMDGFDQS--TNVKVIMAT 318 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC----CCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCC----CChHHHHHHHHHHHHhhCCCCC--CCEEEEEec
Confidence 35567776654 589999999999998755332211 2345578899999999999774 679999999
Q ss_pred CCCCCCCccccCCCccceEEEeC-CCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMS-YCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~-~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|+++.|||||+||||||++|+|| +|+.++|+.|++.++......-.-+++.++... ++|+|||..++.
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999997 899999999999998754322222355666554 699999988874
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.3e-34 Score=313.02 Aligned_cols=213 Identities=21% Similarity=0.327 Sum_probs=159.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc---
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV--- 279 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 279 (449)
.+..+|++++|.+++|+.+.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ---cChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 280 ---QSNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 280 ---~~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
.++..++.+|..+ ..||||||||||++++.++....+ ......+++++||+.|||+.+ ..+++||+|||
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~----~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN 624 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD----GGGAADRVINQILTEMDGMST--KKNVFIIGATN 624 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------CHHHHHHHHHHHSSCS--SSSEEEECC-C
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC----CchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCC
Confidence 3467788888765 579999999999998755432211 124456789999999999976 46799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
+|+.||||++||||||++|++|+|+.++|++||+.++......-.-+++.+++.. ++|+|||..++-
T Consensus 625 ~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred CchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999765433334566666654 599999988873
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=2.3e-32 Score=298.42 Aligned_cols=209 Identities=23% Similarity=0.290 Sum_probs=178.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-- 281 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (449)
+..+|++|+|.+++|++|.+.+..++.+++.|..+|..+++|+|||||||||||+||+++|++++.+++.++++++.+
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred ----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 282 ----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 282 ----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
+..++.+|..+ .+||||||||||.+++.++... ......++++||..|||+.+. .+++||+|||+
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-------~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~ 349 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-------GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNR 349 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-------CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSS
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-------ChHHHHHHHHHHHHHhccccc--CCEEEEEecCC
Confidence 45677777765 4799999999999987543321 234567899999999999764 56999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
++.|||||+|||||+.+|+++.|+.++|++|++.++.........++..++.. .+++++|+..++-
T Consensus 350 ~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred hhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999876533333345666655 4699999987763
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.1e-28 Score=243.08 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=172.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc-
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ- 280 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (449)
..++.+|++++|.+++|+.+.+.+..++.+++.|...|..+++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3466789999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred -----ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 281 -----SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 281 -----~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
....++.+|... ..|+||||||||.+...+...... ........++.||..||++.. ..+++||+||
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~----~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~at 161 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD----GGGAADRVINQILTEMDGMST--KKNVFIIGAT 161 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC----SSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC----cchHHHHHHHHHHHHhhcccC--CCCEEEEEec
Confidence 234455555554 468999999999987643321110 112334677889999998754 4579999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
|+++.||++++|||||+..++++.|+.++|.+|++.++..........++.+... .+++++||..++-
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999976532211223334433 4699999987763
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=239.64 Aligned_cols=209 Identities=20% Similarity=0.299 Sum_probs=162.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-- 281 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (449)
+..+|++++|.+++|+.+.+.+..++.+++.++.++...++|++|+||||||||+|++++|++++..++.++...+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred ----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 282 ----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 282 ----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
...+..+|... ..|+|+++||+|.+...+.... .......++.++..|||... ...++++++||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~ 155 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEA--RQQVFIMAATNR 155 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------CTTHHHHHHHHHHTCCS--TTCEEEEEEESC
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccc--cCCEEEEeecCC
Confidence 23455666653 5799999999999865322110 11234567889999998754 356788999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcC-CCCC--HHHHHHHHHc---cCCCHHHHHHHHh
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGIS-HHYL--FEQIEELIKE---VNVTPAEVAGELM 421 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~-~~~l--~~~i~~l~~~---~~~tpa~i~~~l~ 421 (449)
|+.||+|++||||||.+|++++|+.++|++|++.++... ..++ .-+++.+... .++|+|||..++-
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999998642 1122 2234555553 3899999987763
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=232.80 Aligned_cols=207 Identities=21% Similarity=0.270 Sum_probs=170.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEecccccC
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDLSAVQS 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~~~ 281 (449)
.++.+|++|+|.+++|+.+.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 45678999999999999999999999999998874 35567899999999999999999999999 89999999887642
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...++.+|... .+|+||||||||.+.+.+... ........+++||..+|++... ..+++||+||
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-------~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~at 156 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-------ESEAARRIKTEFLVQMQGVGVD-NDGILVLGAT 156 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-------CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-------cchHHHHHHHHHHHHHhccccc-CCCEEEEEec
Confidence 34555555443 579999999999997643322 1233456788999999997542 4679999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-HHHHHHHHHcc-CCCHHHHHHHH
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-FEQIEELIKEV-NVTPAEVAGEL 420 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l 420 (449)
|+++.+|++++| ||+..++++.|+.++|..|++.++......+ ...++.+.+.. +++++||..++
T Consensus 157 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 157 NIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp SCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999 9999999999999999999999998765554 45667777664 69999998776
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.7e-27 Score=230.25 Aligned_cols=216 Identities=24% Similarity=0.275 Sum_probs=173.3
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+...++.+|++++|.+++++.+.+.+..++..++.|...|...++++||+||||||||++|+++|++++.+++.++++.+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 33456778999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cCh------HHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 280 QSN------SELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 280 ~~~------~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
... ..+..++.. ...|+||||||+|.+...+..... .........+..+++.+++... ...++||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~----~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ 161 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT----GGDREVQRTLMQLLAEMDGFDA--RGDVKIIG 161 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC----GGGGHHHHHHHHHHHHHHTTCS--SSSEEEEE
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC----CccHHHHHHHHHHHHHhhCCCC--CCCEEEEE
Confidence 431 233334433 347899999999999763322111 1123456678889999987754 35789999
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|||.++.+|++++|||||+..++++.|+.+++.+|++.++..........+..+.... ++++++|..++.
T Consensus 162 ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp ECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred eCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765433333345555443 589999987664
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=225.33 Aligned_cols=211 Identities=25% Similarity=0.350 Sum_probs=154.0
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC---
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS--- 281 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--- 281 (449)
+.+|++++|.+++|+.+.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999988765 577888899999999999999999999999999999999999999999987643
Q ss_pred ---hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 282 ---NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 282 ---~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
...+..++... ..|+||+|||+|.+...+....... ........+..|++.+++... ...+++|+|||.+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~---~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF---SNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRA 155 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCc---cchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCCh
Confidence 23344444443 3689999999999875332211100 123345678889999998644 4578999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHH--HHHHHc-cCCCHHHHHHHHh
Q 013128 357 EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQI--EELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 357 ~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i--~~l~~~-~~~tpa~i~~~l~ 421 (449)
+.+|++++|||||+..++++.|+.++|.+|++.++..........+ ..+... .++++++|...+-
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999876555444332 445544 3699999977764
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=7.3e-27 Score=242.80 Aligned_cols=212 Identities=27% Similarity=0.366 Sum_probs=167.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS- 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (449)
....+|++++|.++.|+++.+.+. ++..+..|.++|...++|+||+||||||||++++++|++++.+++.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 345689999999999999988765 577888999999999999999999999999999999999999999999887643
Q ss_pred -----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 282 -----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 282 -----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
...++.+|..+ ..|+||||||||.+...+..... ........+++.||..||++.. ..+++||+|||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~----g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn 162 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG----GGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATN 162 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEES
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC----cCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecC
Confidence 23455555554 47999999999999753321110 1223456788999999998754 35799999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
+++.|||+++|||||+..|.++.|+.++|++|++.++......-...+..+... .+++++||..++-
T Consensus 163 ~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999875432211124444444 3689999977664
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=7.8e-27 Score=231.94 Aligned_cols=210 Identities=20% Similarity=0.247 Sum_probs=170.1
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc
Q 013128 201 VLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ 280 (449)
Q Consensus 201 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 280 (449)
...++.+|++++|.+++|+.+.+.+..++..++.+.. +..+++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3567789999999999999999999999999988877 445578999999999999999999999999999999987763
Q ss_pred C------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 281 S------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 281 ~------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
+ ...++.+|... .+|+||||||||.+...+... .........+.|+..+|++... ...++||+|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-------~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~a 160 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-------ESEASRRIKTELLVQMNGVGND-SQGVLVLGA 160 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-------cchHHHHHHHHHHHHhcccccc-CCceEEEEe
Confidence 2 23344444433 578999999999997633221 1233456788999999988543 467899999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-HHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-FEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
||+++.||++++| ||+..++++.|+.++|.+|++.++......+ ...++.+.... +++++||..++-
T Consensus 161 tn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 161 TNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp ESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999998766554 44667777665 599999987763
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=4.2e-26 Score=218.97 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=162.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..++.+|++++|.+++|+.+.+.+. ++..++.|+..|...++|+||+||||||||++++++|++++.+++.++++.+..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 4567899999999999999988664 577788888899989999999999999999999999999999999999887642
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...+..++... ..|+|++|||+|.+...+..... .........++.+|..+|+... ...++||+||
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~----~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~t 157 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG----GGHDEREQTLNQMLVEMDGFEG--NEGIIVIAAT 157 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSC----CTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcC----CCchHHHHHHHHHHHHhhCccc--CCCEEEEEee
Confidence 34455555543 46899999999998753221110 0122344678899999998754 4568999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
|+++.+|++++|||||+..++++.|+.++|++|++.++......-...+..+... .+++++|+...+.
T Consensus 158 n~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 158 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp SCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999875322111123333443 3589999987764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=2.8e-26 Score=231.04 Aligned_cols=209 Identities=21% Similarity=0.252 Sum_probs=166.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc-
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ- 280 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 280 (449)
..++.+|++|+|.+++|+.+.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 445778999999999999999999999999998887 556678999999999999999999999999999999987653
Q ss_pred -----ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 281 -----SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 281 -----~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
....++.+|... ..|+||||||||.+...+... .........+.||..||++... ...++||+||
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-------~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~at 194 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-------ESEASRRIKTELLVQMNGVGND-SQGVLVLGAT 194 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------------CTHHHHHHHHHHHHHHHCC----CCEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-------cchHHHHHHHHHHHHhhccccc-CCCeEEEeec
Confidence 234455555443 479999999999987633221 1234456788899999987542 3568999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-HHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-FEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|.++.||++++| ||+..++++.|+.++|..|++.++......+ ...++.++... +++++||..++-
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999 9999999999999999999999998765544 44667776655 599999987763
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=1.1e-25 Score=235.31 Aligned_cols=209 Identities=23% Similarity=0.292 Sum_probs=172.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-- 281 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (449)
.+.+|++++|.+..++.+.+.+..++..++.|..+|.+.++++|||||||||||++|+++|++++.+++.++|+.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred ----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 282 ----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 282 ----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
...++.+|..+ ..|+||||||||.+.+.+.... ......+++.||..||+... ...++||+|||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~-------~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-------GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC-------CHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc-------chHHHHHHHHHHHHhhcccc--CCceEEEEecCC
Confidence 23445555544 4689999999999986432211 23345678889999998754 457899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
++.||++++++|||+..++++.|+.++|.++++.++..........+..+... .+++++++..++-
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999875433333334555554 4699999977653
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=2.1e-25 Score=231.10 Aligned_cols=209 Identities=21% Similarity=0.260 Sum_probs=166.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEeccccc
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDLSAVQ 280 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~~ 280 (449)
..++.+|++|+|.+++|+.+.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456789999999999999999999999998888764 34556899999999999999999999999 8999999988764
Q ss_pred C------hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 281 S------NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 281 ~------~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
+ ...++.+|.. ...|+||||||||.+.+.+... ........++.||..||++... ..+++||+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-------~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~a 277 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-------ESEAARRIKTEFLVQMQGVGVD-NDGILVLGA 277 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-------CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-------cccHHHHHHHHHHHHHhCcccC-CCCEEEEec
Confidence 2 2334444443 3579999999999987643222 1233456788999999997542 467899999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-HHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-FEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
||.++.||++++| ||+..++++.|+.++|..|++.++......+ ...++.++... +++++||..++-
T Consensus 278 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 278 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp ESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999998765444 34566666654 699999987763
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=7.1e-25 Score=229.11 Aligned_cols=211 Identities=26% Similarity=0.342 Sum_probs=165.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC--
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS-- 281 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 281 (449)
++.+|++++|.++.|+.+.+.+. ++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999988664 567788899999999999999999999999999999999999999999887743
Q ss_pred ----hHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 282 ----NSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 282 ----~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
...++.+|.... .|+|+||||||.+...+..... ........+++.||..|||... ...++++++||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~----~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~ 178 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG----GGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNR 178 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT----TSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC----CCcHHHHHHHHHHHHHhccccc--CccEEEEEecCC
Confidence 234566676654 5899999999998653321100 0123445788999999998754 356899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 356 KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 356 ~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
|+.||++++|||||+.+|+++.|+.++|++|++.++......-...+..+... .+++++|+.+++-
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999988764321111123334443 3588888877654
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=1.1e-26 Score=224.13 Aligned_cols=214 Identities=29% Similarity=0.371 Sum_probs=157.7
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS- 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (449)
.++.+|++++|.++.++.+.+.+. ++..++.|...|...++|+|||||||||||++|+++|++++.+++.++++.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 456789999999999999988665 578889999999999999999999999999999999999999999998876532
Q ss_pred -----hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 282 -----NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 282 -----~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
...++.++.. ...|+||||||+|.+...+...+... ........++.|++.+++.... ...++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn 159 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS---GNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATN 159 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBS
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC---CchhHHHHHHHHHHHhhCcccC-CCCEEEEEecC
Confidence 1112222222 24689999999999875332111100 1122234567788888876442 34589999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
.++.+|++++|+|||+..++++.|+.++|.++++.++......-...++.+... .+++++||...+-
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999865322111112333333 3588888877654
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=221.04 Aligned_cols=212 Identities=21% Similarity=0.269 Sum_probs=164.9
Q ss_pred cccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 200 IVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 200 ~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+...+|.+|++++|.+.+++.+.+.+..+...++.|...+. .++++|||||||||||++|+++|++++.+++.++++.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 33678899999999999999999999999998888887774 46899999999999999999999999999999999887
Q ss_pred cC------hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 280 QS------NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 280 ~~------~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
.. ...+..++.. ...++||||||||.++..+... ........+..|+..+++........++||+
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~-------~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG-------EHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc-------cchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 43 2334444433 3478999999999997633211 1233456778899999987665556789999
Q ss_pred EcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH-HHHHHHHHcc-CCCHHHHHHHHh
Q 013128 352 TTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 352 tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|||.++.||++++| ||+..++++.|+.+++..+++.++...+..+. +.+..+.... +++++++..++-
T Consensus 258 atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 258 ATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999 99999999999999999999999987666554 4455555543 588888866653
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=3.2e-24 Score=205.43 Aligned_cols=213 Identities=26% Similarity=0.336 Sum_probs=160.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..++.+|++++|.++.+.++.+... .+..+..+..++...++|++|+||||||||+|++++|+.++..++.++...+..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 3456799999999999999887655 456778889999999999999999999999999999999999999998765421
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...+..++... ..|++++|||||.+...+..... .........++.+++.++|... ...++++++|
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~----~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t 161 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG----GGNDEREQTLNQLLVEMDGFEK--DTAIVVMAAT 161 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc----ccchHHHHHHHHHHHHHhCCCC--CCCEEEEEcc
Confidence 23455566654 36899999999998653321100 0123345678889999998644 3457888999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|+|+.||++++|||||+.+++++.|+.++|.+|++.++......-...+..+.... +++++|+...+.
T Consensus 162 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999887543221111244444443 588899977764
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=216.32 Aligned_cols=210 Identities=22% Similarity=0.318 Sum_probs=165.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..++.+|++++|.+++++.+.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999998888887765 45789999999999999999999999999999999988743
Q ss_pred h------HHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 N------SELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ~------~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
. ..++.++.. ..+++||||||||.+...+... ........++.||..+++.....+..++||+||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~-------~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-------EHESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------------CHHHHHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC-------cchHHHHHHHHHHHHHhcccccCCCCEEEEEec
Confidence 2 233444433 3578999999999997533211 123445678889999998765545678999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC-HHHHHHHHHcc-CCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL-FEQIEELIKEV-NVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l~ 421 (449)
|.++.+|+++++ ||+..++++.|+.+++..++..++......+ .+.++.+.... +++++++..++-
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999 9999999999999999999999987655555 34566666654 589999977654
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=1e-23 Score=206.27 Aligned_cols=210 Identities=21% Similarity=0.266 Sum_probs=161.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..++.+|++++|.+++++.+.+.+..+..+++.|..++ .+++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45678999999999999999999999888888887766 34689999999999999999999999999999999987643
Q ss_pred ------hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc-CCCCeEEEEE
Q 013128 282 ------NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC-CGEGRIIVFT 352 (449)
Q Consensus 282 ------~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-~~~~~iiI~t 352 (449)
...++.++.. ..+|+||||||+|.+...+.... ........+.||..+|+.... .+..++||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-------HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------------CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-------chHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 1223333332 35789999999999976332211 122345667889999876542 2356899999
Q ss_pred cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH-HHHHHHHHc-cCCCHHHHHHHHh
Q 013128 353 TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 353 TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
||.++.+|+++++ ||+..++++.|+.+++..+++.++......+. +.++.+... .+++++++..++-
T Consensus 166 tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 166 TNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp ESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999 99999999999999999999999876555443 345555544 3688888866553
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=3.9e-24 Score=209.80 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=114.9
Q ss_pred hhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC------hHHHHHHHHc------CCCCceEEeeccc
Q 013128 237 RIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------NSELRFLLLT------MPSRSMLVIEDID 304 (449)
Q Consensus 237 ~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------~~~l~~~~~~------~~~~~Il~iDeiD 304 (449)
..+..+++|+|||||||||||++|+++|++++.+++.++++++.+ ...++..|.. ...|+||+|||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346677899999999999999999999999999999999887743 2334445543 3479999999999
Q ss_pred hhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc---------cCCCCeEEEEEcCCCCCCCccccCCCccceEEEe
Q 013128 305 CSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS---------CCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHM 375 (449)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~---------~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l 375 (449)
.+.+..+.... .......+.+.|++.||+... .....++||+|||+++.||++|+|||||+.+|++
T Consensus 110 ~~~~~~~~~~~-----~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~ 184 (293)
T 3t15_A 110 AGAGRMGGTTQ-----YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184 (293)
T ss_dssp -------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC
T ss_pred hhcCCCCCCcc-----ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC
Confidence 98762221111 112344567889999885431 1235689999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc
Q 013128 376 SYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE 408 (449)
Q Consensus 376 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~ 408 (449)
|+.++|.+|++.++...+.. .+.+..+...
T Consensus 185 --P~~~~r~~Il~~~~~~~~~~-~~~l~~~~~~ 214 (293)
T 3t15_A 185 --PTREDRIGVCTGIFRTDNVP-AEDVVKIVDN 214 (293)
T ss_dssp --CCHHHHHHHHHHHHGGGCCC-HHHHHHHHHH
T ss_pred --cCHHHHHHHHHHhccCCCCC-HHHHHHHhCC
Confidence 59999999999988754322 3444444443
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=3.8e-23 Score=200.91 Aligned_cols=213 Identities=26% Similarity=0.333 Sum_probs=159.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..++.+|++++|.++.++++.+... .+..+..+..++...++|++|+||||||||+|++++|+.++..++.+++..+..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3467899999999999999887655 456677888999999999999999999999999999999999999998765421
Q ss_pred ------hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 282 ------NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 282 ------~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
...+..++... ..|+++++||+|.+...+..... .........+..+++.++|... ...++++++|
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~----~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t 185 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG----GGNDEREQTLNQLLVEMDGFEK--DTAIVVMAAT 185 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC------------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccC----CcchHHHHHHHHHHHHHhCCCC--CCCEEEEEec
Confidence 23344555553 46899999999988653221100 0122345677889999998643 3457888999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 354 NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 354 N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
|+|+.||++++|||||+.+|+++.|+.++|.+|++.++......-...+..+... .+++++||...+.
T Consensus 186 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp SCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998764321111123444444 3588888876664
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=2.6e-26 Score=253.80 Aligned_cols=213 Identities=21% Similarity=0.318 Sum_probs=165.7
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc--
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ-- 280 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 280 (449)
.+..+|++++|.+++|+.+.+.+..++.++..+...+..++.++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 356789999999999999999988888888888899999999999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 281 ----SNSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 281 ----~~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
....++.+|... ..||||||||||.+...+...... .......+++.||+.||+... ...++||+|||
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~----~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN 624 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD----GGGAADRVINQILTEMDGMST--KKNVFIIGATN 624 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH----HHHHHHHHHHHHHTTCC--------CCBCCCCCB
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC----cchhHHHHHHHHHHHHhcccc--cCCeEEEEecC
Confidence 235566666654 468999999999997644322111 123456789999999999865 46789999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHHh
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGELM 421 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 421 (449)
+++.||+|++|||||+.+|++|+|+.+++..|++.++..........+..+.+. .++|+++|..++-
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred CcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999865321111112223332 3588888877663
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=9.4e-22 Score=217.39 Aligned_cols=209 Identities=23% Similarity=0.290 Sum_probs=168.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS- 281 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 281 (449)
..+.+|++|+|.+++++.+.+.+..++.+++.|..++...+.++||+||||||||++++++|++++.+++.+++.++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999876643
Q ss_pred -----hHHHHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcC
Q 013128 282 -----NSELRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTN 354 (449)
Q Consensus 282 -----~~~l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN 354 (449)
...+..+|... ..|+|+||||||.+...+.... .......+..|+..+++... ...+++|+|||
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-------~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn 348 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-------GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATN 348 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC-------SHHHHHHHHHHHHHHHSSCT--TSCCEEEEECS
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc-------chHHHHHHHHHHHHhhhhcc--cccEEEecccC
Confidence 23444555543 3689999999999876432211 22345677889999998865 35689999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHc-cCCCHHHHHHHH
Q 013128 355 HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKE-VNVTPAEVAGEL 420 (449)
Q Consensus 355 ~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 420 (449)
+++.+|+++.++|||+..+.++.|+.++|.++++.++..........+..+... .+++++++...+
T Consensus 349 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 999999999999999999999999999999999988765422222223444443 368888876654
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=3.1e-19 Score=177.61 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=147.8
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
..|.. ..+|.+|++++|.+..++.+...+....... ....++||+||||||||++|+++|+.++.+++
T Consensus 17 ~~~~~----~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 17 ETYET----SLRPSNFDGYIGQESIKKNLNVFIAAAKKRN--------ECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT--------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred hhhhh----ccCCCCHHHhCChHHHHHHHHHHHHHHHhcC--------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 35654 6788899999999999999988887654321 23568999999999999999999999999999
Q ss_pred EEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc-----------
Q 013128 273 DLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS----------- 341 (449)
Q Consensus 273 ~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~----------- 341 (449)
.+++..+.....+...+.....+++|||||||.+.. .....|+..++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------------~~~~~Ll~~l~~~~~~~~~~~~~~~~ 146 (338)
T 3pfi_A 85 TTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP------------------AIEEVLYPAMEDYRLDIIIGSGPAAQ 146 (338)
T ss_dssp EEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH------------------HHHHHHHHHHHTSCC---------CC
T ss_pred EecchhccchhHHHHHHHhccCCCEEEEechhhcCH------------------HHHHHHHHHHHhccchhhcccCcccc
Confidence 999998888888888888888999999999998742 234456666654210
Q ss_pred ---cCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH-HHHHHHccCCCHHHHH
Q 013128 342 ---CCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ-IEELIKEVNVTPAEVA 417 (449)
Q Consensus 342 ---~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~ 417 (449)
.....+++|++||....++++|++ ||+..++++.|+.+++..++..++...+..+.++ ++.++....-++.++.
T Consensus 147 ~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 147 TIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHH
T ss_pred ceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 001137899999999999999999 9999999999999999999999887655444433 3444443344555554
Q ss_pred HHH
Q 013128 418 GEL 420 (449)
Q Consensus 418 ~~l 420 (449)
+.+
T Consensus 225 ~~l 227 (338)
T 3pfi_A 225 RLL 227 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=3e-18 Score=169.05 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=146.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
..+|.+|++++|.+..++.+...+....... ..+.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHC--------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccC--------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 4578899999999999998888776543211 12478999999999999999999999999999999998888
Q ss_pred hHHHHHHHHc-CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc--------------cCCCC
Q 013128 282 NSELRFLLLT-MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS--------------CCGEG 346 (449)
Q Consensus 282 ~~~l~~~~~~-~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~--------------~~~~~ 346 (449)
...+...+.. ...+++|||||||.+.. .....|+..++.... .....
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~------------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSR------------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCH------------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred hHHHHHHHHHhccCCCEEEEECCccccc------------------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 7788877777 67899999999998742 122345555543210 00124
Q ss_pred eEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH-HHHHHHHccCCCHHHHHHHH
Q 013128 347 RIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE-QIEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 347 ~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~i~~~l 420 (449)
+++|++||.+..++++|.+ ||+..+.++.|+.+++..++..++...+..+.+ .++.++....-.|.++.+.+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 7899999999999999998 998899999999999999999988765555544 34555554455666665554
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=3.3e-20 Score=192.82 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=117.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC--CcEEEEecccccC
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK--FDIYDLDLSAVQS 281 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~~~ 281 (449)
+...|++++|.++.++.+...+..+. .|..+++++|||||||||||++|+++|++++ .+++.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 34568999999999998887665433 2455678999999999999999999999999 9999999888753
Q ss_pred h-----HHHHHHHHcC-----CCCceEEeeccchhhhcccccchhhhh------------ccchhhHHHHHHHHHHhcCc
Q 013128 282 N-----SELRFLLLTM-----PSRSMLVIEDIDCSVKLQNRESSEVQA------------TNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 282 ~-----~~l~~~~~~~-----~~~~Il~iDeiD~l~~~~~~~~~~~~~------------~~~~~~~~~ls~LL~~ldg~ 339 (449)
. ..+...|..+ ..|+||||||||.++..+......... .+........+.++..++..
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 1 3366777665 479999999999998754332110000 00011112334466666522
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccce--EEEeCCCCH
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDM--HLHMSYCNT 380 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~--~i~l~~p~~ 380 (449)
....++.++|++|||+++.+|+++.||||||. .+.+|.|+.
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 22224445666899999999999999999998 566677743
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=1.9e-18 Score=169.48 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=132.4
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCC---cceEEeCCCCCCHHHHHHHHHHHcC-------CcEEEEecccc
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWK---RGYLLYGPPGTGKSSLIAAMANQLK-------FDIYDLDLSAV 279 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~s~~ 279 (449)
+++|.+++|+.|.+.+..+.. +..+.+.|...+ .++||+||||||||++|+++|+.++ .+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999988876553 555666665443 3599999999999999999999983 38999998877
Q ss_pred cC------hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc
Q 013128 280 QS------NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT 353 (449)
Q Consensus 280 ~~------~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT 353 (449)
.. ...+...+... .++||||||+|.+...+.. .......++.|++.++.. ...+++|+||
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~---------~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~ 176 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNE---------RDYGQEAIEILLQVMENN----RDDLVVILAG 176 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC------------CCTHHHHHHHHHHHHHC----TTTCEEEEEE
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCc---------ccccHHHHHHHHHHHhcC----CCCEEEEEeC
Confidence 43 23344444443 5789999999998742211 112345677788888753 3467888888
Q ss_pred CCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHHH
Q 013128 354 NHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQIE 403 (449)
Q Consensus 354 N~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~ 403 (449)
|..+ .++|+|++ ||+.+++|+.|+.+++..|++.++...+..+.++..
T Consensus 177 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~ 229 (309)
T 3syl_A 177 YADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAE 229 (309)
T ss_dssp CHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHH
T ss_pred ChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8653 35799999 999999999999999999999999866555544443
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=2.3e-17 Score=161.31 Aligned_cols=174 Identities=15% Similarity=0.233 Sum_probs=124.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhh-cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC------
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRI-GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------ 281 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------ 281 (449)
+.++|.++.++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999988887654332211111 1123578999999999999999999999999999999987643
Q ss_pred --hHHHHHHHHcC-------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc------CCCC
Q 013128 282 --NSELRFLLLTM-------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC------CGEG 346 (449)
Q Consensus 282 --~~~l~~~~~~~-------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------~~~~ 346 (449)
...+..++... ..++||||||+|.+........ .........+.|+..+++.... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~------~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 168 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS------SHHHHHHHHHHHHHHHHCCEEEETTEEEECTT
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc------cchhHHHHHHHHHHHhcCCeEecccccccCCc
Confidence 23355555443 2479999999999865322111 1112233467788888864210 1235
Q ss_pred eEEEEE----cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHH
Q 013128 347 RIIVFT----TNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNY 390 (449)
Q Consensus 347 ~iiI~t----TN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~ 390 (449)
+++|++ ++.+..++++|++ ||+..++|+.|+.+++..+++..
T Consensus 169 ~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 169 ILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp CEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred EEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 778887 5677889999998 99999999999999999999853
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=9.1e-18 Score=166.05 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=121.1
Q ss_pred cccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 192 HMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
...|.. ..+|.+|++++|.++.++.+.+.+. . | ..+..+|++||||||||++++++|++++.++
T Consensus 13 ~~~~~~----k~rP~~~~~ivg~~~~~~~l~~~l~----~-------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~ 76 (324)
T 3u61_B 13 EHILEQ----KYRPSTIDECILPAFDKETFKSITS----K-------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADM 76 (324)
T ss_dssp CSSHHH----HSCCCSTTTSCCCHHHHHHHHHHHH----T-------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE
T ss_pred cchHHH----hhCCCCHHHHhCcHHHHHHHHHHHH----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE
Confidence 346765 7889999999999999888776664 1 1 2246789999999999999999999999999
Q ss_pred EEEecccccChHHHHHH----HHcCC---CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC
Q 013128 272 YDLDLSAVQSNSELRFL----LLTMP---SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG 344 (449)
Q Consensus 272 ~~l~~s~~~~~~~l~~~----~~~~~---~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 344 (449)
+.++++... ...++.. ....+ .+.||+|||+|.+.+ ......|+..++.. .
T Consensus 77 ~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------------~~~~~~L~~~le~~----~ 134 (324)
T 3u61_B 77 MFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------------AESQRHLRSFMEAY----S 134 (324)
T ss_dssp EEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------------HHHHHHHHHHHHHH----G
T ss_pred EEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------------HHHHHHHHHHHHhC----C
Confidence 999987754 3333332 22222 688999999998851 11234566666643 2
Q ss_pred CCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 345 EGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 345 ~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
..+.+|+|||.+..++++|.+ |+. .++|+.|+.+++..++..++
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 346888999999999999999 885 69999999999887776654
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=5.9e-19 Score=181.14 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=71.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcC-CCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC------
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGR-AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------ 281 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------ 281 (449)
+.++|.++.|+.+...+..+.++...+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999998888776655544444333 35689999999999999999999999999999999876532
Q ss_pred --hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE-cCCCCC
Q 013128 282 --NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT-TNHKEK 358 (449)
Q Consensus 282 --~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t-TN~~~~ 358 (449)
...++.++... ..++.+||+|.+.... .......+++.||+.|||+.+. .. + +++ ||+++.
T Consensus 95 d~e~~lr~lf~~a--~~~~~~De~d~~~~~~----------~~~~e~rvl~~LL~~~dg~~~~--~~-v-~a~~TN~~~~ 158 (444)
T 1g41_A 95 EVDSIIRDLTDSA--MKLVRQQEIAKNRARA----------EDVAEERILDALLPPAKNQWGE--VE-N-HDSHSSTRQA 158 (444)
T ss_dssp CTHHHHHHHHHHH--HHHHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHH--Hhcchhhhhhhhhccc----------hhhHHHHHHHHHHHHhhccccc--cc-c-ccccccCHHH
Confidence 23444554433 2234578887654211 1233467899999999998663 22 3 444 999999
Q ss_pred CCccccCCCccceEEEeCCCCHH-HHHHHH
Q 013128 359 LDPALLRPGRMDMHLHMSYCNTS-VFKQLA 387 (449)
Q Consensus 359 ld~aLlrpgR~d~~i~l~~p~~~-~r~~l~ 387 (449)
||+||+||||||.+|+++.|+.. .+.+++
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------------------
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999999987 455554
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.73 E-value=5e-17 Score=149.85 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=125.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEec
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDL 276 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 276 (449)
...|.+|++++|.++.++.+.+.+.. . ...++||+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~----~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER----K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT----T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC----C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 67889999999999888877766532 1 12459999999999999999999986 456888888
Q ss_pred ccccChHHHHHHH---Hc-----CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeE
Q 013128 277 SAVQSNSELRFLL---LT-----MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRI 348 (449)
Q Consensus 277 s~~~~~~~l~~~~---~~-----~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 348 (449)
+.......+...+ .. ...+.||+|||+|.+.. .....|+..++.. .....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~l~~~l~~~----~~~~~ 134 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------DAQAALRRTMEMY----SKSCR 134 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------------HHHHHHHHHHHHT----TTTEE
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------------HHHHHHHHHHHhc----CCCCe
Confidence 7765544443322 22 24689999999998743 1234455555542 34578
Q ss_pred EEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHH-HHHHHHHccCCCHHHH
Q 013128 349 IVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFE-QIEELIKEVNVTPAEV 416 (449)
Q Consensus 349 iI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~i 416 (449)
+|+|||.++.+++++.+ |+. .++++.++.++...++..++...+..+.+ .++.+.+...-.+..+
T Consensus 135 ~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l 200 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKA 200 (226)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred EEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 88999999999999999 887 89999999999999999877544333332 3333333333344433
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=1.9e-16 Score=152.77 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=113.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC-------
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------- 281 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------- 281 (449)
+.+++.....+.++.....+.. .....+...++++||+||||||||++|+++|+.++.+++.+++.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~---~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHH---HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH---HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4566766666666654222211 122223455789999999999999999999999999999998765321
Q ss_pred hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCC
Q 013128 282 NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKL 359 (449)
Q Consensus 282 ~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~l 359 (449)
...+...+.. ...++||+|||||.+++.+... .......+..|+..+++... .+..++||+|||.++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--------~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--------PRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--------TBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--------hhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhc
Confidence 1234445544 3568999999999987532111 11234456667777776532 24567899999999988
Q ss_pred Cc-cccCCCccceEEEeCCCCH-HHHHHHHHH
Q 013128 360 DP-ALLRPGRMDMHLHMSYCNT-SVFKQLAFN 389 (449)
Q Consensus 360 d~-aLlrpgR~d~~i~l~~p~~-~~r~~l~~~ 389 (449)
++ .+.+ ||+..|++|.++. ++...++..
T Consensus 181 ~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 181 QEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp HHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred chhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 88 5555 9999999988776 666666654
No 39
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=4.3e-16 Score=145.19 Aligned_cols=182 Identities=18% Similarity=0.268 Sum_probs=129.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
...|.+|++++|.+..++.+...+.. + ..++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 56788999999999988888776642 1 11357999999999999999999998843
Q ss_pred ------------cEEEEecccccChHHHHHHHHcCC------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTMP------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~~------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++.........+..++.... .+.+|+|||+|.+.. ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------------~~~~~ 145 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------HSFNA 145 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------------HHHHH
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------------HHHHH
Confidence 345555443333344555655532 578999999998632 23455
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH-HHHHHHHHccC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKEVN 410 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~ 410 (449)
|+..++.. +..+.+|++||.++.+++++.+ |+ ..++++.++.++..+++..++...+..+. +.++.+.+...
T Consensus 146 l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 218 (250)
T 1njg_A 146 LLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 218 (250)
T ss_dssp HHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 77777643 3567899999999999999988 75 68999999999999999988865444433 23444444444
Q ss_pred CCHHHHHHHH
Q 013128 411 VTPAEVAGEL 420 (449)
Q Consensus 411 ~tpa~i~~~l 420 (449)
-.|.++...+
T Consensus 219 G~~~~~~~~~ 228 (250)
T 1njg_A 219 GSLRDALSLT 228 (250)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555554443
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=2e-16 Score=158.91 Aligned_cols=184 Identities=18% Similarity=0.125 Sum_probs=123.9
Q ss_pred CCCC-cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC--cEEEEeccccc
Q 013128 204 HPMT-FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--DIYDLDLSAVQ 280 (449)
Q Consensus 204 ~p~~-f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~~~ 280 (449)
+|.. |++++|.+..++.+...+..... |..+++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 4555 99999999998876554433322 3334579999999999999999999999975 67777654421
Q ss_pred C-------------------------------------------------------hHHHHHHHHcC-----------CC
Q 013128 281 S-------------------------------------------------------NSELRFLLLTM-----------PS 294 (449)
Q Consensus 281 ~-------------------------------------------------------~~~l~~~~~~~-----------~~ 294 (449)
. ...++..+... ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 1 11222222111 12
Q ss_pred CceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEc-----------CCCCCCCccc
Q 013128 295 RSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTT-----------NHKEKLDPAL 363 (449)
Q Consensus 295 ~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tT-----------N~~~~ld~aL 363 (449)
|+||||||+|.+.. ..++.|+..++.. ...+++++|. |.+..++++|
T Consensus 190 ~~vl~IDEi~~l~~------------------~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l 247 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI------------------ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDL 247 (368)
T ss_dssp BCEEEEESGGGSBH------------------HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHH
T ss_pred CceEEEhhccccCh------------------HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHH
Confidence 68999999998742 2445677777643 2234444443 3578899999
Q ss_pred cCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH-HHHHHHccC-CCHHHHHHHH
Q 013128 364 LRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ-IEELIKEVN-VTPAEVAGEL 420 (449)
Q Consensus 364 lrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~-~tpa~i~~~l 420 (449)
++ ||.. ++|++|+.+++..+++..+...+..+.++ ++.++.... -++.++...|
T Consensus 248 ~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 248 LD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred Hh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99 9976 89999999999999999887665555444 344444443 5666665544
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.8e-16 Score=167.07 Aligned_cols=177 Identities=18% Similarity=0.281 Sum_probs=121.9
Q ss_pred cccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcC-hhHHhhhcC---CCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 192 HMRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNG-KEYYTRIGR---AWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 192 ~~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~-~~~~~~~g~---~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
...|.. ..+|.+|++++|.++.++.+.+.+..+... +..++..|. +.++++||+||||||||++|+++|+++
T Consensus 26 ~~lW~e----kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 26 DKLWTV----KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCCHHH----HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCccc----ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346865 789999999999999999999888765432 222333333 256799999999999999999999999
Q ss_pred CCcEEEEecccccChHHHHHHHH-------------c-------CCCCceEEeeccchhhhcccccchhhhhccchhhHH
Q 013128 268 KFDIYDLDLSAVQSNSELRFLLL-------------T-------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKV 327 (449)
Q Consensus 268 ~~~~~~l~~s~~~~~~~l~~~~~-------------~-------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~ 327 (449)
+.+++.++++.......+...+. . ...++||+|||+|.+.... ..
T Consensus 102 ~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------------~~ 166 (516)
T 1sxj_A 102 GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------------RG 166 (516)
T ss_dssp TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------------TT
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------------HH
Confidence 99999999988766443332221 1 2467899999999986410 11
Q ss_pred HHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 328 TLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 328 ~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.+..|++.++.. +..+|+|+++.....++ .+. |+...+.|+.|+.+++..++...+..++
T Consensus 167 ~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 167 GVGQLAQFCRKT----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp HHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 244566666531 12233333333333443 354 4456899999999999999988765443
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=9.1e-18 Score=169.08 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=119.5
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhh-hcC-CCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC------
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTR-IGR-AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS------ 281 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~-~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------ 281 (449)
.++|.+..++.+...+............ .+. ..+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999998888654432211000 111 24678999999999999999999999999999999987753
Q ss_pred --hHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc-----------
Q 013128 282 --NSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC----------- 342 (449)
Q Consensus 282 --~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~----------- 342 (449)
...+..++... ..++||||||||.+...+...... .......+.+.||..|||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~----~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSIT----RDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-------CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccc----cccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 22344455443 357899999999987643222111 1122234788899999954210
Q ss_pred ------CCCCeEEEEEcCCC----------CC-----------------------------------CCccccCCCccce
Q 013128 343 ------CGEGRIIVFTTNHK----------EK-----------------------------------LDPALLRPGRMDM 371 (449)
Q Consensus 343 ------~~~~~iiI~tTN~~----------~~-----------------------------------ld~aLlrpgR~d~ 371 (449)
...++++|+|+|.. .. +.|+|+. ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 11334555555532 11 6788887 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q 013128 372 HLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 372 ~i~l~~p~~~~r~~l~~~~l 391 (449)
.+.+++|+.+.+..|+...+
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPK 269 (363)
T ss_dssp EEECCCCCHHHHHHHHHSST
T ss_pred eeecCCCCHHHHHHHHHHHH
Confidence 99999999999999998633
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=4.9e-17 Score=146.40 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=107.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
...|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34577899999999888777665421 225789999999999999999999997 7888
Q ss_pred EEEecccccCh--------HHHHHHHH---cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc
Q 013128 272 YDLDLSAVQSN--------SELRFLLL---TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW 340 (449)
Q Consensus 272 ~~l~~s~~~~~--------~~l~~~~~---~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 340 (449)
+.+++..+... ..+..++. ....++||+|||+|.+...+.... ... ....|...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-------~~~---~~~~l~~~~~~-- 149 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-------AMD---AGNMLKPALAR-- 149 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------------CCC---CHHHHHHHHHT--
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-------hHH---HHHHHHHhhcc--
Confidence 88887665311 12333332 456788999999999865321100 011 12223333322
Q ss_pred ccCCCCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHH
Q 013128 341 SCCGEGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLA 387 (449)
Q Consensus 341 ~~~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~ 387 (449)
..+.+|++||.++ .+++++.+ ||+ .++++.|+.+++.+++
T Consensus 150 ----~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ----GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ----CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 3567888888776 78999999 998 6999999999988764
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.67 E-value=2.7e-16 Score=166.61 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=113.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChH----
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNS---- 283 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~---- 283 (449)
.++++|.+++++.+.+.+........ ..+..+||+||||||||++++++|+.++.++..++++.+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~-------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS-------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS-------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc-------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 45689999999988766543322221 1355799999999999999999999999999999987754322
Q ss_pred -----------HHHHHHHcCC-CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc---------
Q 013128 284 -----------ELRFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC--------- 342 (449)
Q Consensus 284 -----------~l~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--------- 342 (449)
.+...+.... ...||||||||.+..... ....+.||..||.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~--------------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFR--------------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhc--------------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 1223444442 445999999999864211 11345578888753211
Q ss_pred --CCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHh
Q 013128 343 --CGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 343 --~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l 391 (449)
.-..++||+|||.++.++|+|++ ||+ .|+++.|+.+++..|++.++
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 01457999999999999999999 996 69999999999999999887
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=3.2e-16 Score=153.57 Aligned_cols=164 Identities=14% Similarity=0.194 Sum_probs=119.8
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----- 267 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----- 267 (449)
..|.. ..+|.+|++++|.++.++.+.+.+. . +. ..++|||||||||||++++++|+.+
T Consensus 5 ~~~~~----k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 67 (319)
T 2chq_A 5 EIWVE----KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENW 67 (319)
T ss_dssp -CTTT----TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCH
T ss_pred ccHHH----hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcc
Confidence 35754 7889999999999988887765442 1 11 2349999999999999999999997
Q ss_pred CCcEEEEecccccChHHH---HHHHH-cC----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc
Q 013128 268 KFDIYDLDLSAVQSNSEL---RFLLL-TM----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 268 ~~~~~~l~~s~~~~~~~l---~~~~~-~~----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 339 (449)
+.+++.++++.......+ ...+. .. ..+.||+|||+|.+.. ...+.|+..++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~L~~~le~~ 129 (319)
T 2chq_A 68 RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------DAQAALRRTMEMY 129 (319)
T ss_dssp HHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------------HHHHTTGGGTSSS
T ss_pred cCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------------HHHHHHHHHHHhc
Confidence 346788888765332222 22222 21 3578999999998742 1234466666642
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
+..+++|++||.+..+++++.+ |+. .+.++.|+.++...++..++...+..+
T Consensus 130 ----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 130 ----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp ----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred ----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3567889999999999999999 775 799999999999999998876554444
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=8.8e-16 Score=158.81 Aligned_cols=151 Identities=21% Similarity=0.287 Sum_probs=111.1
Q ss_pred cCCCCCcccccCCHHHH---HHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc
Q 013128 202 LKHPMTFKTLALDSELK---REITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA 278 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k---~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 278 (449)
..+|.+|++++|.+.++ +.+...+.. |. ..++|||||||||||++|+++|+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 57899999999999887 455544431 11 258999999999999999999999999999998765
Q ss_pred ccChHHHHHHHHc------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEE
Q 013128 279 VQSNSELRFLLLT------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFT 352 (449)
Q Consensus 279 ~~~~~~l~~~~~~------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~t 352 (449)
.. ...++..+.. ...++||||||||.+.. .....||..++. ..+++|++
T Consensus 86 ~~-~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------~~q~~LL~~le~------~~v~lI~a 140 (447)
T 3pvs_A 86 SG-VKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------SQQDAFLPHIED------GTITFIGA 140 (447)
T ss_dssp CC-HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------CCHHHHHT------TSCEEEEE
T ss_pred CC-HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------------HHHHHHHHHHhc------CceEEEec
Confidence 43 2334333332 34789999999998843 122347777764 23566655
Q ss_pred c--CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 353 T--NHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 353 T--N~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
| |....++++|++ |+. .+.++.|+.++...++.+++..
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 5 444689999999 885 6789999999999999998865
No 47
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.6e-15 Score=149.15 Aligned_cols=164 Identities=14% Similarity=0.200 Sum_probs=120.0
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC----
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---- 268 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---- 268 (449)
..|.. ..+|.+|++++|.++.++.+...+.. |. ..++||+||||||||++|+++|+.+.
T Consensus 13 ~~~~~----k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~ 75 (327)
T 1iqp_A 13 KPWVE----KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENW 75 (327)
T ss_dssp SCHHH----HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred Cchhh----ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 46755 68999999999999998888766542 11 23599999999999999999999973
Q ss_pred -CcEEEEecccccChHH----HHHHHHcC----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc
Q 013128 269 -FDIYDLDLSAVQSNSE----LRFLLLTM----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 269 -~~~~~l~~s~~~~~~~----l~~~~~~~----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 339 (449)
..++.+++++...... +....... ..+.||+|||+|.+.. ...+.|+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~L~~~le~~ 137 (327)
T 1iqp_A 76 RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------------DAQQALRRTMEMF 137 (327)
T ss_dssp HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------------HHHHHHHHHHHHT
T ss_pred cCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------------HHHHHHHHHHHhc
Confidence 3477888765432222 22222222 3578999999998742 1344566666642
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
...+.+|++||.++.+++++.+ |+. .+.++.++.++...++..++...+..+
T Consensus 138 ----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 138 ----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred ----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 3457888899999999999988 775 799999999999999988876554433
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=1.9e-15 Score=149.86 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChH
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNS 283 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~ 283 (449)
.|..+++++|.++.++.+...+.. ++++||+||||||||++|+++|+.++.+++.++++......
T Consensus 22 ~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 22 IDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred HHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 344567899999988877665532 35899999999999999999999999999999875333222
Q ss_pred HHHHH---------HHcCCC---CceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc-------cccCC
Q 013128 284 ELRFL---------LLTMPS---RSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL-------WSCCG 344 (449)
Q Consensus 284 ~l~~~---------~~~~~~---~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-------~~~~~ 344 (449)
.+... +..... .+||+|||+|.+.. .+.+.|+..|+.. ....+
T Consensus 87 ~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~------------------~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 87 DLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA------------------KVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp HHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH------------------HHHHHHHHHHHHSEEEETTEEEECC
T ss_pred hcCCceeecCCCCceEeccCcccccEEEEEccccCCH------------------HHHHHHHHHHhcCceeeCCEEEECC
Confidence 22100 000011 37999999998642 2345566666521 11223
Q ss_pred CCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 345 EGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 345 ~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
..+++|+|+|..+ .++++|++ ||+.++++++|+.+++.++++..+..
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 4567888888554 38999999 99999999999999999999998865
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=9.3e-16 Score=143.75 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=107.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEeccc
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSA 278 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~ 278 (449)
+.++.+|+++++.+ ..+.+++.+..+...+ .++++||+||||||||++++++|+++. ..++.++++.
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAA-GNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC---CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCC-CCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44557999999832 1233444555544422 257899999999999999999999884 7888888877
Q ss_pred ccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCe-EEEEEcCCCC
Q 013128 279 VQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGR-IIVFTTNHKE 357 (449)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~-iiI~tTN~~~ 357 (449)
+... +...+.....+.+|+|||+|.+... . .....|+..++..... ... +|+.++..++
T Consensus 91 ~~~~--~~~~~~~~~~~~vliiDe~~~~~~~-------------~---~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 91 HASI--STALLEGLEQFDLICIDDVDAVAGH-------------P---LWEEAIFDLYNRVAEQ--KRGSLIVSASASPM 150 (242)
T ss_dssp GGGS--CGGGGTTGGGSSEEEEETGGGGTTC-------------H---HHHHHHHHHHHHHHHH--CSCEEEEEESSCTT
T ss_pred HHHH--HHHHHHhccCCCEEEEeccccccCC-------------H---HHHHHHHHHHHHHHHc--CCCeEEEEcCCCHH
Confidence 6432 1122233456899999999987431 0 0122344444433221 223 4444444444
Q ss_pred ---CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 358 ---KLDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 358 ---~ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
.+++++.+ |+. ..++++.|+.+++.+++..++...+..+
T Consensus 151 ~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~ 194 (242)
T 3bos_A 151 EAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL 194 (242)
T ss_dssp TTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC
T ss_pred HHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 45688888 775 8999999999999999998876444333
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=1.9e-15 Score=148.00 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=116.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSEL 285 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l 285 (449)
+.++|.+..++.+...+......-. . ...+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4578999999988888876542210 0 01122469999999999999999999998 566999999877554322
Q ss_pred HHHH------------------HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC---
Q 013128 286 RFLL------------------LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG--- 344 (449)
Q Consensus 286 ~~~~------------------~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~--- 344 (449)
..++ ......+||+|||+|.+.. ...+.|+..|+......+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------------~~~~~Ll~~le~~~~~~~~~~ 154 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------------------DVFNILLQMLDDGRLTDSHGR 154 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH------------------HHHHHHHHHHHHSEEECTTSC
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH------------------HHHHHHHHHHhcCEEEcCCCC
Confidence 2222 1112458999999998742 245667777764321111
Q ss_pred ----CCeEEEEEcCC--------------------------CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 345 ----EGRIIVFTTNH--------------------------KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 345 ----~~~iiI~tTN~--------------------------~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
..+++|+|||. ...++|+|+. ||+..+.+++|+.+++..|+..++..
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 35789999998 4578899998 99999999999999999999988753
No 51
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.63 E-value=7.1e-15 Score=147.39 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=118.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.++.++.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 67899999999999998888776642 1 12457999999999999999999999854
Q ss_pred ------------cEEEEecccccChHHHHHHHHcC------CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 270 ------------DIYDLDLSAVQSNSELRFLLLTM------PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 270 ------------~~~~l~~s~~~~~~~l~~~~~~~------~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+++.++...-.....++.++... ..+.||+|||+|.+.. ...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------------~~~~~ 138 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------HSFNA 138 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------------HHHHH
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH------------------HHHHH
Confidence 34555544322223344444433 2468999999998732 23456
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYL 398 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l 398 (449)
|+..++.. +..+++|++|+.+..+++++.+ |+ ..++++.|+.++...++..++...+..+
T Consensus 139 Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~ 198 (373)
T 1jr3_A 139 LLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH 198 (373)
T ss_dssp HHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred HHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 77777653 4568889999999999999998 76 6899999999999999998875443333
No 52
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=1.4e-15 Score=151.48 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=117.1
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC----
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---- 268 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---- 268 (449)
..|.. ..+|.+|++++|.+++++.+...+. .. . ..++||+||||||||++++++|+.++
T Consensus 25 ~~~~~----k~~p~~~~~i~g~~~~~~~l~~~l~----~~-------~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 87 (353)
T 1sxj_D 25 QPWVE----KYRPKNLDEVTAQDHAVTVLKKTLK----SA-------N--LPHMLFYGPPGTGKTSTILALTKELYGPDL 87 (353)
T ss_dssp -CHHH----HTCCSSTTTCCSCCTTHHHHHHHTT----CT-------T--CCCEEEECSTTSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHH----hcCCCCHHHhhCCHHHHHHHHHHHh----cC-------C--CCEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46765 6799999999999988877765542 11 1 23499999999999999999999964
Q ss_pred --CcEEEEecccccChHHHHH---HHHc---------------CCCCceEEeeccchhhhcccccchhhhhccchhhHHH
Q 013128 269 --FDIYDLDLSAVQSNSELRF---LLLT---------------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVT 328 (449)
Q Consensus 269 --~~~~~l~~s~~~~~~~l~~---~~~~---------------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 328 (449)
..++.+++++......++. .+.. ...+.||+|||+|.+.. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------------~~ 149 (353)
T 1sxj_D 88 MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------------DA 149 (353)
T ss_dssp HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------------HH
T ss_pred cccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------------HH
Confidence 4688888877544332221 1111 23457999999998743 12
Q ss_pred HHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 329 LSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 329 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.+.|+..++.. .....+|++||+++.+++++.+ |+. .+.++.++.++...++...+...+
T Consensus 150 ~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 150 QSALRRTMETY----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp HHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhc----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhC
Confidence 35566766643 2345677788999999999998 885 799999999999999988775443
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.8e-15 Score=146.12 Aligned_cols=161 Identities=14% Similarity=0.227 Sum_probs=118.5
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----- 267 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----- 267 (449)
..|.. ...|.+|++++|.++.++.+.+.+.. +. ...+||+||||||||++++++|+.+
T Consensus 9 ~~~~~----~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 71 (323)
T 1sxj_B 9 LPWVE----KYRPQVLSDIVGNKETIDRLQQIAKD-----------GN--MPHMIISGMPGIGKTTSVHCLAHELLGRSY 71 (323)
T ss_dssp CCHHH----HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGH
T ss_pred CcHHH----hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 35654 67899999999999988877766531 11 1239999999999999999999997
Q ss_pred CCcEEEEecccccChHHHHHHHHc---------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC
Q 013128 268 KFDIYDLDLSAVQSNSELRFLLLT---------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG 338 (449)
Q Consensus 268 ~~~~~~l~~s~~~~~~~l~~~~~~---------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 338 (449)
+.+++.+++++......++..+.. ...+.||+|||+|.+.. ...+.|+..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------------~~~~~L~~~le~ 133 (323)
T 1sxj_B 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------------GAQQALRRTMEL 133 (323)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------------HHHHTTHHHHHH
T ss_pred cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------------HHHHHHHHHHhc
Confidence 456888887765444444433321 22478999999998743 123345666653
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 339 LWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 339 ~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
. ....++|++||.++.+++++.+ |+. .++++.|+.++...++...+...+
T Consensus 134 ~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~ 183 (323)
T 1sxj_B 134 Y----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLED 183 (323)
T ss_dssp T----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT
T ss_pred c----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcC
Confidence 2 3457888899999999999998 764 799999999999999988765433
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=2.7e-15 Score=148.40 Aligned_cols=187 Identities=15% Similarity=0.233 Sum_probs=118.2
Q ss_pred cCCCCCccccc-CCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 202 LKHPMTFKTLA-LDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 202 ~~~p~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
+.+..+|++++ |.... . ....+......+. ...++++||||||||||++++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~-~-a~~~~~~~~~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-L-AYEVVKEALENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-H-HHHHHHHHHHTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-H-HHHHHHHHHhCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44566899997 43322 2 2233444443321 124689999999999999999999999 8999999987
Q ss_pred cccCh--H-----HHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEE
Q 013128 278 AVQSN--S-----ELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIV 350 (449)
Q Consensus 278 ~~~~~--~-----~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI 350 (449)
.+... . ...........+.||+|||+|.+...+ .....++..++.... .+.++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~----------------~~~~~l~~~l~~~~~--~~~~iii 136 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKE----------------RTQIEFFHIFNTLYL--LEKQIIL 136 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCH----------------HHHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCCh----------------HHHHHHHHHHHHHHH--CCCeEEE
Confidence 65321 0 011112222358999999999975310 112234444433222 2345666
Q ss_pred EEcCCCC---CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHHH-HHHHHccCCCHHHHHHH
Q 013128 351 FTTNHKE---KLDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQI-EELIKEVNVTPAEVAGE 419 (449)
Q Consensus 351 ~tTN~~~---~ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~i-~~l~~~~~~tpa~i~~~ 419 (449)
++++.+. .++++|.+ ||. ..+++++ +.+++..+++.++...+..+.++. +.++... -+..++...
T Consensus 137 ~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 137 ASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp EESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHH
T ss_pred EecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHH
Confidence 6766665 68999998 886 7899999 999999999998875555554443 3334444 444444333
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.62 E-value=3.8e-15 Score=149.59 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=115.1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEecc
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLS 277 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s 277 (449)
.+++++|.++..+.+.+.+...+.. ..+++++|+||||||||++++++++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4588999999888887766544322 225789999999999999999999999 8888999987
Q ss_pred cccCh----------------------HH-HHH---HHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 278 AVQSN----------------------SE-LRF---LLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 278 ~~~~~----------------------~~-l~~---~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
...+. .. +.. .+.....++||+|||+|.+.... .....+..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------------~~~~~l~~ 154 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------------GGQDLLYR 154 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------------THHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------------CCChHHHh
Confidence 64321 11 111 22223458899999999985310 02345556
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCC---CCCCccccCCCccce-EEEeCCCCHHHHHHHHHHHhC
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHK---EKLDPALLRPGRMDM-HLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~d~-~i~l~~p~~~~r~~l~~~~l~ 392 (449)
+++.++.... +..+++|++||.+ +.+++++.+ ||.. .++|++++.++...++...+.
T Consensus 155 l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 155 ITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred HhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 6666554310 3467899999987 788999998 8875 899999999999999998875
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.61 E-value=4e-15 Score=150.39 Aligned_cols=174 Identities=17% Similarity=0.224 Sum_probs=112.4
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHh-----------------hhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYT-----------------RIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~-----------------~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.++|.++.|+.+...+.........-. .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999887754433221100 011223568999999999999999999999999999
Q ss_pred EEecccccC--------hHHHHHHHHcCC------CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC
Q 013128 273 DLDLSAVQS--------NSELRFLLLTMP------SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG 338 (449)
Q Consensus 273 ~l~~s~~~~--------~~~l~~~~~~~~------~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 338 (449)
.++++.+.. ...+..++.... .++||||||||.+...+...... .........+.|+..||+
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~----~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT----RDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------------CHHHHHHHHHHHHC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCcee----cccchHHHHHHHHHHhhc
Confidence 999887642 223444444332 67999999999987532111100 011122367788888886
Q ss_pred ccc-----------------cCCCCeEEEEEcCCC-----------------------------------------CCCC
Q 013128 339 LWS-----------------CCGEGRIIVFTTNHK-----------------------------------------EKLD 360 (449)
Q Consensus 339 ~~~-----------------~~~~~~iiI~tTN~~-----------------------------------------~~ld 360 (449)
..- -...++++|+|||.. ..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (376)
T 1um8_A 178 SLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLI 257 (376)
T ss_dssp CEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCC
T ss_pred cceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCC
Confidence 420 001345777877720 1245
Q ss_pred ccccCCCccceEEEeCCCCHHHHHHHHHH
Q 013128 361 PALLRPGRMDMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 361 ~aLlrpgR~d~~i~l~~p~~~~r~~l~~~ 389 (449)
|+|+. |++..+.|+.++.++...++..
T Consensus 258 p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 258 PELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred hHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 66766 8989999999999999988874
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.60 E-value=4.7e-14 Score=140.44 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=131.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQS 281 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 281 (449)
...|.+|+.++|.+.+++.+...+..-.. .| ..+..++|+||||||||+|++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 56788999999998777766555433211 11 12367999999999999999999999999888777666655
Q ss_pred hHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc------cc--------CCCCe
Q 013128 282 NSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW------SC--------CGEGR 347 (449)
Q Consensus 282 ~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~------~~--------~~~~~ 347 (449)
...+...+.....+.|++|||++.+... ....|+..++... .. .-..+
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~~------------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNKA------------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCHH------------------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCHH------------------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 6666666666667889999999987530 1111233332110 00 01235
Q ss_pred EEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCCCCCH-HHHHHHHHccCCCHHHHHHHH
Q 013128 348 IIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISHHYLF-EQIEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 348 iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~~~l~-~~i~~l~~~~~~tpa~i~~~l 420 (449)
.++.+|+++..|++++++ ||...+.+++++.+++.+++++.....+..+. +.+..++....=+|..+...|
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 677899999999999999 99989999999999999999987654433343 334445555555565544433
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=1.3e-15 Score=136.77 Aligned_cols=147 Identities=19% Similarity=0.218 Sum_probs=101.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
...|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34577899999999887777665421 225689999999999999999999998 7888
Q ss_pred EEEecccccC--------hHHHHHH---HHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc
Q 013128 272 YDLDLSAVQS--------NSELRFL---LLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW 340 (449)
Q Consensus 272 ~~l~~s~~~~--------~~~l~~~---~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 340 (449)
+.+++..+.. ...+..+ +.....+.||+|||+|.+.+.+... .........|+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---------~~~~~~~~~l~~~~~~-- 150 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA---------EGALDAGNILKPMLAR-- 150 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC---------TTSCCTHHHHHHHHHT--
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc---------ccchHHHHHHHHHHhc--
Confidence 8888765421 1122222 3334568899999999986422100 0011223334444432
Q ss_pred ccCCCCeEEEEEcCCCC-----CCCccccCCCccceEEEeCCCC
Q 013128 341 SCCGEGRIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCN 379 (449)
Q Consensus 341 ~~~~~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~ 379 (449)
..+++|++||.++ .+|+++.+ ||+. ++++.|+
T Consensus 151 ----~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 ----GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ----TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ----CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4567888888765 68999999 9985 9999885
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.1e-14 Score=141.58 Aligned_cols=200 Identities=12% Similarity=0.141 Sum_probs=131.3
Q ss_pred ccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcEEEEeccccc
Q 013128 211 LALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDIYDLDLSAVQ 280 (449)
Q Consensus 211 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~s~~~ 280 (449)
|.+.++..+.|...+...+... .+.++|||||||||||++++++++++ ++.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~---------~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSS---------QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---------CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 4455566667776666666533 26789999999999999999999999 4567888887653
Q ss_pred Ch----------------------HHHHHHHHcC----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHH
Q 013128 281 SN----------------------SELRFLLLTM----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLN 334 (449)
Q Consensus 281 ~~----------------------~~l~~~~~~~----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 334 (449)
+. ..+...|... ..++||+|||+|.+.. +..+-.|++
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~-----------------q~~L~~l~~ 155 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-----------------EKILQYFEK 155 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC-----------------THHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc-----------------chHHHHHHh
Confidence 32 2345555543 4678999999999851 123444554
Q ss_pred HhcCccccCCCCeEEEEEcCCCCC----CCccccCCCccc-eEEEeCCCCHHHHHHHHHHHhCcCCCC------------
Q 013128 335 FIDGLWSCCGEGRIIVFTTNHKEK----LDPALLRPGRMD-MHLHMSYCNTSVFKQLAFNYLGISHHY------------ 397 (449)
Q Consensus 335 ~ldg~~~~~~~~~iiI~tTN~~~~----ld~aLlrpgR~d-~~i~l~~p~~~~r~~l~~~~l~~~~~~------------ 397 (449)
... .....++||+++|..+. |++++.+ ||. ..|+|++++.++...|+++-+......
T Consensus 156 ~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~ 229 (318)
T 3te6_A 156 WIS----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMT 229 (318)
T ss_dssp HHH----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEE
T ss_pred ccc----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 332 12356889999999865 3555666 886 589999999999999999877542111
Q ss_pred ----CHH-HHHHHHH-----ccCCCHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHh
Q 013128 398 ----LFE-QIEELIK-----EVNVTPAEVAGELMK-----STNAEVSLNGLVKFLHAKMTQ 443 (449)
Q Consensus 398 ----l~~-~i~~l~~-----~~~~tpa~i~~~l~~-----~~~~~~al~~l~~~l~~~~~~ 443 (449)
+.+ .-+..-. ...+++.-| +++.+ ++|...||+-+..+++....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ai-~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 230 IYNNIREGQNQKIPDNVIVINHKINNKIT-QLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp ECCCC--------CTTEEEECEECCHHHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCHHHH-HHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 000 0000000 012555444 44443 589999999999888876554
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.5e-14 Score=145.54 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=111.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----------CCcEEEEecc
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----------KFDIYDLDLS 277 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----------~~~~~~l~~s 277 (449)
++++|.++..+.+.+.+..+.... .+++++|+||||||||++++++++++ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~---------~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNE---------VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTC---------CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC---------CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 789999999999998887766532 25689999999999999999999998 8999999876
Q ss_pred ccc-Ch-----------------------HH-HHHHHHcCC-CCceEEeeccchhhhcccccchhhhhccchhhHHH-HH
Q 013128 278 AVQ-SN-----------------------SE-LRFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVT-LS 330 (449)
Q Consensus 278 ~~~-~~-----------------------~~-l~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~-ls 330 (449)
... +. .. +..+..... .+.||+|||+|.+.... .... +.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~--------------~~~~~l~ 156 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR--------------GGDIVLY 156 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHST--------------TSHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCC--------------CCceeHH
Confidence 544 21 11 112222112 23399999999985411 0112 33
Q ss_pred HHHHHhcCccccCCCCeEEEEEcCCC---CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 331 GLLNFIDGLWSCCGEGRIIVFTTNHK---EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 331 ~LL~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.|+... ..+.+|+|||.+ +.+++++.+ ||...++|++++.++..+++..++.
T Consensus 157 ~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 157 QLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 344322 457889999987 788999988 8877999999999999999998874
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=2.1e-14 Score=143.34 Aligned_cols=186 Identities=14% Similarity=0.170 Sum_probs=119.7
Q ss_pred cccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-CC---
Q 013128 194 RWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-KF--- 269 (449)
Q Consensus 194 ~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~--- 269 (449)
.|.. ..+|.+|++++|.++.++.+...+. .. |. .+. ++|+||||||||++++++|+++ +.
T Consensus 3 ~w~~----kyrP~~~~~~vg~~~~~~~l~~~~~---~~-------~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 3 LWVD----KYRPKSLNALSHNEELTNFLKSLSD---QP-------RD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp -CTT----TTCCCSGGGCCSCHHHHHHHHTTTT---CT-------TC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred cchh----ccCCCCHHHhcCCHHHHHHHHHHHh---hC-------CC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 4755 7899999999999887766654330 11 11 133 9999999999999999999964 21
Q ss_pred -------------------------cEEEEecccccChH--HHHHHHHc----------------CCCCceEEeeccchh
Q 013128 270 -------------------------DIYDLDLSAVQSNS--ELRFLLLT----------------MPSRSMLVIEDIDCS 306 (449)
Q Consensus 270 -------------------------~~~~l~~s~~~~~~--~l~~~~~~----------------~~~~~Il~iDeiD~l 306 (449)
+++.++.+...... .++..+.. ..++.||+|||++.+
T Consensus 67 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L 146 (354)
T 1sxj_E 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL 146 (354)
T ss_dssp C------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS
T ss_pred eEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc
Confidence 23344433322111 23332221 225679999999985
Q ss_pred hhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHH
Q 013128 307 VKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQL 386 (449)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l 386 (449)
-. ...+.|+..++.. ..+..+|++||.++.+.+++.+ |+ ..+.|+.|+.++...+
T Consensus 147 ~~------------------~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~ 201 (354)
T 1sxj_E 147 TK------------------DAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTI 201 (354)
T ss_dssp CH------------------HHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred CH------------------HHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHH
Confidence 21 1234466666543 2457888999999999999998 87 7899999999999999
Q ss_pred HHHHhCcCCCCCH--HHHHHHHHccCCCHHHHHHHH
Q 013128 387 AFNYLGISHHYLF--EQIEELIKEVNVTPAEVAGEL 420 (449)
Q Consensus 387 ~~~~l~~~~~~l~--~~i~~l~~~~~~tpa~i~~~l 420 (449)
+...+..++..+. +.++.+++..+=++.++...|
T Consensus 202 l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 202 LSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 9988765443333 234444444444444444443
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.57 E-value=1.9e-14 Score=148.68 Aligned_cols=188 Identities=16% Similarity=0.252 Sum_probs=116.2
Q ss_pred cCCCCCccccc-CCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEe
Q 013128 202 LKHPMTFKTLA-LDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLD 275 (449)
Q Consensus 202 ~~~p~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 275 (449)
+.+..+|++++ |..... ....+..+...+ +. .++++||||||||||+|++++|+++ +..++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44456899987 544332 233344444332 11 5689999999999999999999999 88899998
Q ss_pred cccccCh-------HHHHHHHHcCC-CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCe
Q 013128 276 LSAVQSN-------SELRFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGR 347 (449)
Q Consensus 276 ~s~~~~~-------~~l~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 347 (449)
+..+... .....+..... ++.||+|||+|.+.+.. .+...|+..++.+.. .+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~----------------~~q~~l~~~l~~l~~--~~~~ 229 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT----------------GVQTELFHTFNELHD--SGKQ 229 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH----------------HHHHHHHHHHHHHHT--TTCE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh----------------HHHHHHHHHHHHHHH--CCCe
Confidence 8765321 00111222234 78999999999885310 112234444443322 1234
Q ss_pred EEEEEcCCCCC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHHhCcCCCCCHHH-HHHHHHccCCCHHHHHHH
Q 013128 348 IIVFTTNHKEK---LDPALLRPGRMD--MHLHMSYCNTSVFKQLAFNYLGISHHYLFEQ-IEELIKEVNVTPAEVAGE 419 (449)
Q Consensus 348 iiI~tTN~~~~---ld~aLlrpgR~d--~~i~l~~p~~~~r~~l~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~~~ 419 (449)
+||.|.+.+.. ++++|++ ||. ..+.++.|+.+++..+++..+...+..+.++ ++.++....-++.++...
T Consensus 230 iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 230 IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp EEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 55545454544 8899999 886 7899999999999999998875433333322 333333334444444433
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=5e-14 Score=141.12 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=114.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc------CCcEEEEecccc
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL------KFDIYDLDLSAV 279 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~l~~s~~ 279 (449)
..+++++|.++..+.+.+.+...+.. ..++.++|+||||||||++++++++.+ +..++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34588999998888887766443322 225689999999999999999999999 888999886543
Q ss_pred cC----------------------hHH----HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHH
Q 013128 280 QS----------------------NSE----LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLL 333 (449)
Q Consensus 280 ~~----------------------~~~----l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL 333 (449)
.+ ... +...+.....+.||+|||+|.+.... ....+..|+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~--------------~~~~l~~l~ 153 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY--------------NDDILYKLS 153 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS--------------CSTHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC--------------cCHHHHHHh
Confidence 21 111 22233344458999999999986411 123466677
Q ss_pred HHhcCccccCCCCeEEEEEcCCC---CCCCccccCCCccc-eEEEeCCCCHHHHHHHHHHHhC
Q 013128 334 NFIDGLWSCCGEGRIIVFTTNHK---EKLDPALLRPGRMD-MHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 334 ~~ldg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~d-~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
..++.. .+..+.+|++||.+ +.+++++.+ |+. ..+++++++.++..+++...+.
T Consensus 154 ~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 154 RINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred hchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 777654 13467888899877 567888887 664 4899999999999999998764
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=2.1e-14 Score=158.03 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=114.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh---
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN--- 282 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~--- 282 (449)
+.++|.++.++.+.+.+........ . ...+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 4688999998888887765442110 0 00111269999999999999999999998 688999999988642
Q ss_pred --HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc-------CCCCeEEEEEc
Q 013128 283 --SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC-------CGEGRIIVFTT 353 (449)
Q Consensus 283 --~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-------~~~~~iiI~tT 353 (449)
..+...+. ...++||||||||.+.. ..++.|++.||.-.-. ....++||+||
T Consensus 567 ~~~~l~~~~~-~~~~~vl~lDEi~~~~~------------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 567 SGGQLTEKVR-RKPYSVVLLDAIEKAHP------------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp C---CHHHHH-HCSSSEEEEECGGGSCH------------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccchhhHHHH-hCCCeEEEEeCccccCH------------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 22333332 24578999999998732 3566788888742111 12356899999
Q ss_pred CCCCC------------CCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 354 NHKEK------------LDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 354 N~~~~------------ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
|.+.. +.|+|+. ||+..|.|++|+.+++..|+..++.
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 97654 7888888 9999999999999999999998875
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.56 E-value=4.3e-14 Score=147.15 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=106.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
..+|.+|+.++|.++..+.+++.+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 45778899999999998888776542 125689999999999999999999997 7889
Q ss_pred EEEeccccc-C--hHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCC
Q 013128 272 YDLDLSAVQ-S--NSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEG 346 (449)
Q Consensus 272 ~~l~~s~~~-~--~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~ 346 (449)
+.++++.-. . ...+..++.. ...++||||| .. . ...+.|+..|+ .+.
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---~--------------~a~~~L~~~L~------~g~ 291 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---I--------------DASNILKPSLA------RGE 291 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------------CCCTT------SSS
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---h--------------hHHHHHHHhhc------CCC
Confidence 988886211 1 1234444433 2468999999 10 0 01223444443 246
Q ss_pred eEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 347 RIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 347 ~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
+.+|++||..+ .+|++|.+ ||.. |.++.|+.+++..|++.++..
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred EEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 88999999987 69999999 9975 999999999999999988875
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=2e-14 Score=143.03 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=101.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC------------
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF------------ 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 269 (449)
..+|.+|++++|.++.++.+...+ . .+ ...++||+||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~---~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA---V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH---H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHh---h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 456788999999998776543221 1 11 1357999999999999999999999863
Q ss_pred ---------------------cEEEEecccccChHHH------HHHHHcC-----------CCCceEEeeccchhhhccc
Q 013128 270 ---------------------DIYDLDLSAVQSNSEL------RFLLLTM-----------PSRSMLVIEDIDCSVKLQN 311 (449)
Q Consensus 270 ---------------------~~~~l~~s~~~~~~~l------~~~~~~~-----------~~~~Il~iDeiD~l~~~~~ 311 (449)
+++.+..+. +...+ ...+... ..++||||||||.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--- 158 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--- 158 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---
T ss_pred ccccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---
Confidence 122221111 11111 1111111 1378999999998743
Q ss_pred ccchhhhhccchhhHHHHHHHHHHhcCc---ccc------CCCCeEEEEEcCCCC-CCCccccCCCccceEEEeCCC-CH
Q 013128 312 RESSEVQATNQEENKVTLSGLLNFIDGL---WSC------CGEGRIIVFTTNHKE-KLDPALLRPGRMDMHLHMSYC-NT 380 (449)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~---~~~------~~~~~iiI~tTN~~~-~ld~aLlrpgR~d~~i~l~~p-~~ 380 (449)
.....|+..++.- ... .+..+++|+|||..+ .++++|++ ||+.++++++| +.
T Consensus 159 ---------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 159 ---------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDV 221 (350)
T ss_dssp ---------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSH
T ss_pred ---------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcH
Confidence 2344566666531 111 112578889999755 89999999 99999999999 67
Q ss_pred HHHHHHHHHHh
Q 013128 381 SVFKQLAFNYL 391 (449)
Q Consensus 381 ~~r~~l~~~~l 391 (449)
+.+..|+...+
T Consensus 222 ~~~~~il~~~~ 232 (350)
T 1g8p_A 222 ETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77778887643
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=1.4e-13 Score=138.35 Aligned_cols=160 Identities=15% Similarity=0.087 Sum_probs=116.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEecccccCh
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSAVQSN 282 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~~~ 282 (449)
.+++++|.++..+.+.+.+........ +..+.++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 348899999999999988877665421 112379999999999999999999999 678888987665432
Q ss_pred HH--------------------------HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHh
Q 013128 283 SE--------------------------LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFI 336 (449)
Q Consensus 283 ~~--------------------------l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 336 (449)
.. +...+.....+.||+|||+|.+. ...+..|+..+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~------------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA------------------PDILSTFIRLG 149 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc------------------hHHHHHHHHHH
Confidence 11 11222334568899999999872 12455566766
Q ss_pred cCccccCCCCeEEEEEcCCC---CCCCccccCCCccce-EEEeCCCCHHHHHHHHHHHhCc
Q 013128 337 DGLWSCCGEGRIIVFTTNHK---EKLDPALLRPGRMDM-HLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 337 dg~~~~~~~~~iiI~tTN~~---~~ld~aLlrpgR~d~-~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
+.........+.+|++||.+ +.+++.+.+ |+.. .+++++++.++...++...+..
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 54321101367888999988 778888888 8875 8999999999999999887653
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=6.2e-14 Score=156.21 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=105.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
..+|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +..+
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 34577899999999888877765521 125689999999999999999999998 8899
Q ss_pred EEEecccccCh--------HHHHHHHHc---CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc
Q 013128 272 YDLDLSAVQSN--------SELRFLLLT---MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW 340 (449)
Q Consensus 272 ~~l~~s~~~~~--------~~l~~~~~~---~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 340 (449)
+.++++.+... ..+..++.. ...++||||||+|.+.+.....+ .....+.|...++.
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g----------~~~~~~~L~~~l~~-- 297 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG----------AVDAGNMLKPALAR-- 297 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------------HHHHHT--
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc----------hHHHHHHHHHHHhC--
Confidence 99998877421 234444443 24689999999999875322211 11122334444432
Q ss_pred ccCCCCeEEEEEcCCCC----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 341 SCCGEGRIIVFTTNHKE----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 341 ~~~~~~~iiI~tTN~~~----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
.++.+|++||.++ .+|++|.+ ||+. |.++.|+.+++.++++.++.
T Consensus 298 ----~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 298 ----GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp ----TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred ----CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 3567888888764 47999999 9986 99999999999999987664
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=4.3e-14 Score=135.66 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEecccccCh
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSAVQSN 282 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~ 282 (449)
.+|++++|.....+.+.+.+...... +.++||+||||||||++|+++++.+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~-----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS-----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 47999999999988888877665432 46899999999999999999999985 68999999887432
Q ss_pred HHHHHHHH-----------------cCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-c---
Q 013128 283 SELRFLLL-----------------TMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-S--- 341 (449)
Q Consensus 283 ~~l~~~~~-----------------~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~--- 341 (449)
.-...++. ....+++|||||||.+.. .....|+..++... .
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------~~q~~Ll~~l~~~~~~~~g 133 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------MVQEKLLRVIEYGELERVG 133 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------HHHHHHHHHHHHCEECCCC
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------HHHHHHHHHHHhCCeecCC
Confidence 11111111 012468999999998743 12344666665211 0
Q ss_pred ---cCCCCeEEEEEcCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHHhC
Q 013128 342 ---CCGEGRIIVFTTNHK-------EKLDPALLRPGRMD-MHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 342 ---~~~~~~iiI~tTN~~-------~~ld~aLlrpgR~d-~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
.....+.+|+|||.. ..++++|.. ||. ..|.+|.... ++...++..++.
T Consensus 134 ~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp C--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 011346788899874 357888988 885 5778887765 667777776654
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=6.9e-14 Score=153.89 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=114.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccCh------
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSN------ 282 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~------ 282 (449)
+.++|.++.++.+...+.....+-. .. ..+..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~-~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l 533 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HE-HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 533 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CT-TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CC-CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhh
Confidence 3477888888877776654322100 00 0122369999999999999999999999999999999887431
Q ss_pred -------------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc--C----
Q 013128 283 -------------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC--C---- 343 (449)
Q Consensus 283 -------------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~---- 343 (449)
..+...+.. ..++||||||||.+.+ .+++.|++.||.-.-. .
T Consensus 534 ~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~------------------~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 534 IGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHP------------------DVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp CCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCH------------------HHHHHHHHHHHHSEEEETTTEEE
T ss_pred cCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCH------------------HHHHHHHHHhcCcEEEcCCCCEE
Confidence 122333333 4579999999998642 3667788888732111 0
Q ss_pred -CCCeEEEEEcCCCC-------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 344 -GEGRIIVFTTNHKE-------------------------KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 344 -~~~~iiI~tTN~~~-------------------------~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
-.+++||+|||... .++|+|++ ||+..|.|++++.+++..|+..++.
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 13578999999854 57888988 9999999999999999999998875
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.7e-13 Score=136.52 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=115.1
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC----
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---- 268 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---- 268 (449)
..|.. ..+|.+|++++|.+++++.+...+. . |. ..++||+||||||||++++++|+.+.
T Consensus 13 ~~~~~----k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 13 LPWVE----KYRPETLDEVYGQNEVITTVRKFVD----E-------GK--LPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCHHH----HTCCSSGGGCCSCHHHHHHHHHHHH----T-------TC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CchHH----HhCCCcHHHhcCcHHHHHHHHHHHh----c-------CC--CceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 46755 6899999999999887776655543 1 11 12399999999999999999999973
Q ss_pred -CcEEEEecccccChHHHHHH---HHc-C----CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCc
Q 013128 269 -FDIYDLDLSAVQSNSELRFL---LLT-M----PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGL 339 (449)
Q Consensus 269 -~~~~~l~~s~~~~~~~l~~~---~~~-~----~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 339 (449)
..+..++.++......++.. +.. . ..+.|++|||+|.+.. ...+.|+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------------~~~~~L~~~le~~ 137 (340)
T 1sxj_C 76 SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------------AAQNALRRVIERY 137 (340)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------------HHHHHHHHHHHHT
T ss_pred cceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------------HHHHHHHHHHhcC
Confidence 34677777654433333322 221 1 2478999999998742 1234566666643
Q ss_pred cccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 340 WSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 340 ~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.....+|++||.+..+.+++.+ |+. .+.++.++.++....+...+..++
T Consensus 138 ----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 138 ----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred ----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 2456778889999999999999 875 689999999988888887774433
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=2.3e-13 Score=149.66 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=112.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
...|..|++++|.++..+.+++.+.. ..+.++||+||||||||++|+++|+.+ +..+
T Consensus 179 ~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 179 LARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 34677899999999888887765531 235789999999999999999999997 6778
Q ss_pred EEEecccccC--------hHHHHHHHHcCC--CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccc
Q 013128 272 YDLDLSAVQS--------NSELRFLLLTMP--SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWS 341 (449)
Q Consensus 272 ~~l~~s~~~~--------~~~l~~~~~~~~--~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 341 (449)
+.++++.+.. ...+..++.... .++||||||+|.+.+....... ... ..+.+..+..
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~---------~~~----~~~~L~~~l~ 312 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---------QVD----AANLIKPLLS 312 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC---------HHH----HHHHHSSCSS
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc---------hHH----HHHHHHHHHh
Confidence 8888766542 234555554443 5799999999998753221100 111 2222322222
Q ss_pred cCCCCeEEEEEcCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 342 CCGEGRIIVFTTNHK-----EKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 342 ~~~~~~iiI~tTN~~-----~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
...+.+|++||.+ -.+|++|.+ ||+ .+.++.|+.+++.++++.+..
T Consensus 313 --~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 313 --SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp --SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred --CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 2457788888864 357899999 998 699999999999999987654
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=2.8e-13 Score=149.02 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=106.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----------CCcE
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----------KFDI 271 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~ 271 (449)
...|..|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +..+
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 45677899999999999888776532 225689999999999999999999997 7888
Q ss_pred EEEecccc-c--ChHHHHHHHHc--CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCC
Q 013128 272 YDLDLSAV-Q--SNSELRFLLLT--MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEG 346 (449)
Q Consensus 272 ~~l~~s~~-~--~~~~l~~~~~~--~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~ 346 (449)
+.+++..- . ....+..++.. ...++||||| .. ....+.|+..++ ...
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-----------------~~~~~~L~~~l~------~~~ 291 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-----------------IDASNILKPSLA------RGE 291 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------------CCCTT------SSS
T ss_pred EEecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-----------------hhHHHHHHHHHh------cCC
Confidence 88887221 1 12234444443 2578999999 10 001223444443 246
Q ss_pred eEEEEEcCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCc
Q 013128 347 RIIVFTTNHKE-----KLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 347 ~iiI~tTN~~~-----~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
+.+|+|||..+ .+|++|.| ||. .|.++.|+.+++..|++.++..
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 88999999988 79999999 995 5999999999999999987765
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=9.8e-14 Score=121.28 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=89.9
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHH
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELR 286 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~ 286 (449)
+++|.....+.+.+.+..... ....+||+||||||||++|+++++.. +.+++ ++|+.+.......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 467878888888877765533 24579999999999999999999987 67888 9999887654444
Q ss_pred HHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC-------CCC
Q 013128 287 FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK-------EKL 359 (449)
Q Consensus 287 ~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-------~~l 359 (449)
..+... .+++|||||||.+.. .....|+..|... ...+.+|+|||.+ ..+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~------------------~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~ 126 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR------------------EQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHI 126 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH------------------HHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCC
T ss_pred cHHHHc-CCcEEEEcChHHCCH------------------HHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCC
Confidence 444433 568999999998743 1234466666432 2345678888864 234
Q ss_pred CccccCCCccc-eEEEeCCC
Q 013128 360 DPALLRPGRMD-MHLHMSYC 378 (449)
Q Consensus 360 d~aLlrpgR~d-~~i~l~~p 378 (449)
++.|.. |+. ..|++|+.
T Consensus 127 ~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 127 IAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp CHHHHH--HHHHHEEECCCC
T ss_pred CHHHHH--HhcCCEEeCCCC
Confidence 555554 442 35777764
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.43 E-value=4.2e-12 Score=126.29 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=95.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC------------------------CcEEEEecc---cccChHHHHHHHHcC---
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK------------------------FDIYDLDLS---AVQSNSELRFLLLTM--- 292 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s---~~~~~~~l~~~~~~~--- 292 (449)
+.+||||||||||||++|+++|+.+. .+++.++.. .-.....++.+....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 56799999999999999999999874 356666653 222334455554443
Q ss_pred ---CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q 013128 293 ---PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRM 369 (449)
Q Consensus 293 ---~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~ 369 (449)
..+.|++|||+|.+.. ...+.||..++.. +...++|++||.++.+.|++++ |+
T Consensus 104 ~~~~~~kvviIdead~l~~------------------~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc 159 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLTD------------------AAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC 159 (334)
T ss_dssp CTTSSCEEEEESCGGGBCH------------------HHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred cccCCcEEEEECchhhcCH------------------HHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cc
Confidence 2468999999998742 2346688888753 4568888999999999999999 77
Q ss_pred ceEEEeCCCCHHHHHHHHHHHh
Q 013128 370 DMHLHMSYCNTSVFKQLAFNYL 391 (449)
Q Consensus 370 d~~i~l~~p~~~~r~~l~~~~l 391 (449)
..++|+.|+.++...++....
T Consensus 160 -~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 160 -RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp -EEEECCCCCHHHHHHHHHHHC
T ss_pred -eeeeCCCCCHHHHHHHHHHhc
Confidence 469999999999998888775
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.41 E-value=1.2e-12 Score=128.64 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=103.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHH
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSEL 285 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l 285 (449)
++++|.....+.+.+.+..... ...++||+||||||||++|+++++.. +.+++.++|+.+....-.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 3577888888888887765532 24689999999999999999999976 578999999887432111
Q ss_pred HHHHHc-----------------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcc-c------
Q 013128 286 RFLLLT-----------------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLW-S------ 341 (449)
Q Consensus 286 ~~~~~~-----------------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~------ 341 (449)
..+|.. ...+++|||||||.+.. .....|+..++... .
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~------------------~~q~~Ll~~l~~~~~~~~g~~~ 132 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------------LMQVRLLRAIQEREVQRVGSNQ 132 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH------------------HHHHHHHHHHHSSBCCBTTBCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH------------------HHHHHHHHHHhcCEeeecCCcc
Confidence 111111 11357999999998843 13345677766432 0
Q ss_pred cCCCCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCC--HHHHHHHHHHHhC
Q 013128 342 CCGEGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCN--TSVFKQLAFNYLG 392 (449)
Q Consensus 342 ~~~~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~--~~~r~~l~~~~l~ 392 (449)
.....+.||+|||.. ..++++|.. || ...|++|++. .++...|+..|+.
T Consensus 133 ~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 133 TISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp CCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred cccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 011346788899875 246677777 77 4567888877 4667777777664
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=1.2e-12 Score=145.73 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=114.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChH--
Q 013128 209 KTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNS-- 283 (449)
Q Consensus 209 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~-- 283 (449)
+.++|.++.++.+...+........ . ...+..++||+||||||||++|+++|+.+ +.+++.++|+.+....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~---~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCS---C-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 5678888888888777765432100 0 00112479999999999999999999999 7899999998775421
Q ss_pred -----------------HHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccC---
Q 013128 284 -----------------ELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCC--- 343 (449)
Q Consensus 284 -----------------~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~--- 343 (449)
.+...+.. ...+||||||||.+.. .+++.|+..||.-.-..
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~~------------------~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAHP------------------DVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp GGC--------------CHHHHHHH-CSSEEEEESSGGGSCH------------------HHHHHHHHHHTTTEECCSSS
T ss_pred HHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccCH------------------HHHHHHHHHhccCceECCCC
Confidence 12222222 3468999999998632 36677889888432110
Q ss_pred ----CCCeEEEEEcCC--------------------------CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 344 ----GEGRIIVFTTNH--------------------------KEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 344 ----~~~~iiI~tTN~--------------------------~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
-.+.+||+|||. ...+.|+|+. |++..+.+++|+.++...|+..++.
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 135789999997 2346777877 9999999999999999999998875
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.37 E-value=2.5e-13 Score=118.43 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=87.0
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHH
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLL 289 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~ 289 (449)
+++|.....+.+.+.+..+... ..++||+||||||||++|+++++..+ +++.++|+.+.... ....+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-PMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-HHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-hhhHH
Confidence 4678888888888888766432 35799999999999999999999988 99999988764321 23334
Q ss_pred HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC-CCC----Ccccc
Q 013128 290 LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK-EKL----DPALL 364 (449)
Q Consensus 290 ~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~-~~l----d~aLl 364 (449)
.. ..+++|||||||.+.. .....|+..++... ...+.+|+|||.+ +.+ ++.|.
T Consensus 72 ~~-a~~~~l~lDei~~l~~------------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~ 129 (143)
T 3co5_A 72 QK-AEGGVLYVGDIAQYSR------------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLA 129 (143)
T ss_dssp HH-TTTSEEEEEECTTCCH------------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHH
T ss_pred Hh-CCCCeEEEeChHHCCH------------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHH
Confidence 33 3478999999998743 12233555555321 2346677777754 332 23333
Q ss_pred CCCcc-ceEEEeCCC
Q 013128 365 RPGRM-DMHLHMSYC 378 (449)
Q Consensus 365 rpgR~-d~~i~l~~p 378 (449)
. |+ ...|++|+.
T Consensus 130 ~--rl~~~~i~lPpL 142 (143)
T 3co5_A 130 G--LFSESVVRIPPL 142 (143)
T ss_dssp H--HSSSEEEEECCC
T ss_pred H--HhcCcEEeCCCC
Confidence 3 43 346777764
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.35 E-value=4.1e-12 Score=132.75 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=94.7
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC--cEEEEecccccChHHH--
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF--DIYDLDLSAVQSNSEL-- 285 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~~~~~~~l-- 285 (449)
.++|.+++++.+...+. . +.++||+||||||||++|+++|+.++. ++..+.+.- .+...+
T Consensus 23 ~ivGq~~~i~~l~~al~---~------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---S------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---H------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---c------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46788877776654432 1 358999999999999999999999953 444444432 111111
Q ss_pred ---------HHHHHcCC-----CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-------ccccCC
Q 013128 286 ---------RFLLLTMP-----SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-------LWSCCG 344 (449)
Q Consensus 286 ---------~~~~~~~~-----~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------~~~~~~ 344 (449)
...+.... .++|||||||+.+.+ .+.+.|+..|+. .... -
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~------------------~~q~~LL~~lee~~v~i~G~~~~-~ 147 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP------------------AILNTLLTAINERQFRNGAHVEK-I 147 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCCH------------------HHHHHHHHHHHSSEEECSSSEEE-C
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH------------------HHHHHHHHHHHHHhccCCCCcCC-c
Confidence 11122111 356899999986532 355668887752 2111 1
Q ss_pred CCeEEEEEcCCCCC---CCccccCCCccceEEEeCCCCH-HHHHHHHHHHhC
Q 013128 345 EGRIIVFTTNHKEK---LDPALLRPGRMDMHLHMSYCNT-SVFKQLAFNYLG 392 (449)
Q Consensus 345 ~~~iiI~tTN~~~~---ld~aLlrpgR~d~~i~l~~p~~-~~r~~l~~~~l~ 392 (449)
..+++|+|||.... ..+++++ ||..++++|+|+. +++..|+.....
T Consensus 148 ~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 148 PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 23467888886422 4469999 9999999999997 778888887653
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=5.9e-12 Score=123.73 Aligned_cols=123 Identities=15% Similarity=0.228 Sum_probs=94.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc------CCcEEEEeccc-ccChHHHHHHHHcC---C---CCceEEeeccchhhhc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL------KFDIYDLDLSA-VQSNSELRFLLLTM---P---SRSMLVIEDIDCSVKL 309 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~l~~s~-~~~~~~l~~~~~~~---~---~~~Il~iDeiD~l~~~ 309 (449)
...||||||||||||++|+++|+.+ +.+++.++.++ -.....++.++... + ...|++|||+|.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 3589999999999999999999974 56888888764 23333444444332 2 357999999998842
Q ss_pred ccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 013128 310 QNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFN 389 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~ 389 (449)
...+.||..|+.. +...++|++||.++++.|++++ | .++|+.|+.++..+.+..
T Consensus 97 -----------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 97 -----------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp -----------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHH
Confidence 2356688888753 4567888888999999999999 7 789999999998888887
Q ss_pred HhC
Q 013128 390 YLG 392 (449)
Q Consensus 390 ~l~ 392 (449)
.++
T Consensus 151 ~~~ 153 (305)
T 2gno_A 151 KIG 153 (305)
T ss_dssp HHT
T ss_pred HhC
Confidence 764
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=3.3e-13 Score=144.35 Aligned_cols=127 Identities=18% Similarity=0.248 Sum_probs=87.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe----cccccC---hHHHH-------HHHHcCCCCceEEeeccchhhhcc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD----LSAVQS---NSELR-------FLLLTMPSRSMLVIEDIDCSVKLQ 310 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~----~s~~~~---~~~l~-------~~~~~~~~~~Il~iDeiD~l~~~~ 310 (449)
++||+||||||||++|+++|+.++..++... +..+.. ..... ..+. ...++|++|||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-LADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-HHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-ecCCCcEEeehhhhCCH--
Confidence 7999999999999999999999987666432 122110 00000 0000 12468999999998742
Q ss_pred cccchhhhhccchhhHHHHHHHHHHhcCc---------cccCCCCeEEEEEcCCCC-------------CCCccccCCCc
Q 013128 311 NRESSEVQATNQEENKVTLSGLLNFIDGL---------WSCCGEGRIIVFTTNHKE-------------KLDPALLRPGR 368 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~iiI~tTN~~~-------------~ld~aLlrpgR 368 (449)
...+.|+..|+.- ....+..+.||+|||.+. .|+++|++ |
T Consensus 406 ----------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--R 467 (595)
T 3f9v_A 406 ----------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--R 467 (595)
T ss_dssp ----------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--G
T ss_pred ----------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--h
Confidence 2345577777632 122234578999999986 89999999 9
Q ss_pred cc-eEEEeCCCCHHHHHHHHHHHhCc
Q 013128 369 MD-MHLHMSYCNTSVFKQLAFNYLGI 393 (449)
Q Consensus 369 ~d-~~i~l~~p~~~~r~~l~~~~l~~ 393 (449)
|| ..+..++|+.+ ...|+++.+..
T Consensus 468 FDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 468 FDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 98 45666788888 88898888764
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.29 E-value=1.7e-11 Score=148.20 Aligned_cols=137 Identities=23% Similarity=0.354 Sum_probs=96.7
Q ss_pred CcceEEeCCCCCCHHHHH-HHHHHHcCCcEEEEecccccChHHHHHHHHcC-----------------CCCceEEeeccc
Q 013128 243 KRGYLLYGPPGTGKSSLI-AAMANQLKFDIYDLDLSAVQSNSELRFLLLTM-----------------PSRSMLVIEDID 304 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la-~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~-----------------~~~~Il~iDeiD 304 (449)
++++||+||||||||++| +++++..++.++.++++...+...+...+... .+++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 479999999999999999 55555558889999999888776666555421 235799999999
Q ss_pred hhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCC------CCeEEEEEcCCCC-----CCCccccCCCccceEE
Q 013128 305 CSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCG------EGRIIVFTTNHKE-----KLDPALLRPGRMDMHL 373 (449)
Q Consensus 305 ~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------~~~iiI~tTN~~~-----~ld~aLlrpgR~d~~i 373 (449)
.... ++-+. ......+.+++. ..|++.... ..+.+|+|||++. .|+|+|+| || ..+
T Consensus 1347 mp~~--d~yg~-------q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1347 LPKL--DKYGS-------QNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp CSCC--CSSSC-------CHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred cccc--cccCc-------hhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 6432 11110 111223333332 224443211 2478999999995 79999999 99 679
Q ss_pred EeCCCCHHHHHHHHHHHhC
Q 013128 374 HMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 374 ~l~~p~~~~r~~l~~~~l~ 392 (449)
.++.|+.++++.|+..++.
T Consensus 1414 ~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999988774
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=4.5e-12 Score=114.28 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEeccc
Q 013128 203 KHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSA 278 (449)
Q Consensus 203 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~ 278 (449)
..+.+|++++......+.+.+.+..+...- ..+.+.+++|+||||||||+|++++|+.+ |..++.+++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 356799999886555666667776666532 22336789999999999999999999988 66666666554
Q ss_pred ccChH-------HHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEE
Q 013128 279 VQSNS-------ELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVF 351 (449)
Q Consensus 279 ~~~~~-------~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~ 351 (449)
+...- .....+....++.+|+|||++.... .......+..+++.. .. .+..+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~-------------~~~~~~~l~~ll~~~---~~---~~~~ii~ 138 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL-------------SDWQRELISYIITYR---YN---NLKSTII 138 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC-------------CHHHHHHHHHHHHHH---HH---TTCEEEE
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC-------------CHHHHHHHHHHHHHH---HH---cCCCEEE
Confidence 42110 0002233334789999999985421 122223444444433 11 3457788
Q ss_pred EcCCCC
Q 013128 352 TTNHKE 357 (449)
Q Consensus 352 tTN~~~ 357 (449)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 888764
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=6.4e-11 Score=119.99 Aligned_cols=164 Identities=10% Similarity=0.103 Sum_probs=106.6
Q ss_pred CcccccCCHHHHHHHHHHH-HHHHcChhHHhhhcCCCCcceEE--eCCCCCCHHHHHHHHHHHc---------CCcEEEE
Q 013128 207 TFKTLALDSELKREITEDL-ENFMNGKEYYTRIGRAWKRGYLL--YGPPGTGKSSLIAAMANQL---------KFDIYDL 274 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l-~~~~~~~~~~~~~g~~~~rg~LL--~GPpGtGKT~la~aiA~~l---------~~~~~~l 274 (449)
..+.++|.++..+.+.+.+ ........ ..++.++| +||||||||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~-------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAG-------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSC-------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCC-------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3478899999888888877 65544300 11467999 9999999999999999987 4567778
Q ss_pred ecccccCh----------------------HH----HHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHH
Q 013128 275 DLSAVQSN----------------------SE----LRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVT 328 (449)
Q Consensus 275 ~~s~~~~~----------------------~~----l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 328 (449)
++....+. .. +...+.....+.||+|||+|.+...+. .....
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~------------~~~~~ 160 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR------------IAAED 160 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT------------SCHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC------------cchHH
Confidence 76432211 11 112222234688999999998853100 01234
Q ss_pred HHHHHHHhcCccccCC--CCeEEEEEcCCCC---CCC---ccccCCCccceEEEeCCCCHHHHHHHHHHHhC
Q 013128 329 LSGLLNFIDGLWSCCG--EGRIIVFTTNHKE---KLD---PALLRPGRMDMHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 329 ls~LL~~ldg~~~~~~--~~~iiI~tTN~~~---~ld---~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
+..|+..++.... .+ ..+.+|+|||.++ .++ +.+.+ ++...++++.++.++..+++...+.
T Consensus 161 l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 161 LYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 4445555543210 02 4577888887664 344 56666 5555599999999999999987654
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.14 E-value=4.8e-11 Score=109.36 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=64.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCC-CCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRA-WKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAV 279 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (449)
.+.+|+++++.+...+.+.+.+..++.... .. .+++++|+||||||||++++++++++ +..++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 456899998866555556666666654221 11 12789999999999999999999998 677877776543
Q ss_pred cCh-------HHHHHHHHcCCCCceEEeeccchh
Q 013128 280 QSN-------SELRFLLLTMPSRSMLVIEDIDCS 306 (449)
Q Consensus 280 ~~~-------~~l~~~~~~~~~~~Il~iDeiD~l 306 (449)
... ..+...+.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 210 001112222234569999999765
No 86
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.04 E-value=5.1e-10 Score=102.78 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=68.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhh
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQ 318 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~ 318 (449)
++|.++++|||||||||||++|.++|+.+...++.+..+. +. ..+.......||+|||+|.-..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~~~~---------- 117 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATTTCW---------- 117 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECHHHH----------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCchhH----------
Confidence 3566778999999999999999999999976554332111 10 1122223456999999984311
Q ss_pred hccchhhHHHHHHHHHHhcCccc----cCC-----CCeEEEEEcCCC---CCCCccccCCCccceEEEeCCC
Q 013128 319 ATNQEENKVTLSGLLNFIDGLWS----CCG-----EGRIIVFTTNHK---EKLDPALLRPGRMDMHLHMSYC 378 (449)
Q Consensus 319 ~~~~~~~~~~ls~LL~~ldg~~~----~~~-----~~~iiI~tTN~~---~~ld~aLlrpgR~d~~i~l~~p 378 (449)
...-..+-+.+||... ... ...-+|.|||.. +..-+.|.+ |+ ..+.++.|
T Consensus 118 -------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~ 179 (212)
T 1tue_A 118 -------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNA 179 (212)
T ss_dssp -------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSC
T ss_pred -------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCC
Confidence 1111235567777421 000 124678899974 222346666 77 46777644
No 87
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.99 E-value=2.2e-10 Score=115.59 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=86.8
Q ss_pred hcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhh
Q 013128 238 IGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEV 317 (449)
Q Consensus 238 ~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~ 317 (449)
.+++.+..++|+||||+||||+++++++.++..++.++... ......+....+..++++||++.......+...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~-- 237 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLPS-- 237 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCC--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhccc--
Confidence 36777889999999999999999999999987766543222 122333555567888999999987642111000
Q ss_pred hhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCC
Q 013128 318 QATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSY 377 (449)
Q Consensus 318 ~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~ 377 (449)
.......+.+.+.+||. +.++++||+++.+ +++++|||++..+...+
T Consensus 238 -----~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 238 -----GQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -----CSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -----cCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 00111456678888873 4568889999999 89999999999888766
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.98 E-value=3.5e-10 Score=111.21 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=61.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC----CcEEEEecccc
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK----FDIYDLDLSAV 279 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~s~~ 279 (449)
.+.+|+++.+....+..+.+.+..|+... +.....+++||||||||||+|+.++|+++. ..++.+.+..+
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 35789999876544455555555555421 111257899999999999999999999765 77777765543
Q ss_pred cC-------hHHHHHHHHcCCCCceEEeeccchh
Q 013128 280 QS-------NSELRFLLLTMPSRSMLVIEDIDCS 306 (449)
Q Consensus 280 ~~-------~~~l~~~~~~~~~~~Il~iDeiD~l 306 (449)
.. ...+...+.......+|+|||++..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11 1111111111234679999999754
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=9.2e-10 Score=117.97 Aligned_cols=53 Identities=32% Similarity=0.266 Sum_probs=43.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 202 LKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 202 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
..+|.+|++++|.+.+++.+...+. ....++|+||||||||+++++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4578899999999888766654442 1358999999999999999999999853
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=7e-10 Score=129.20 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=91.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcC----------hhHHhh------hc------------CCCCcceEEeCCCCCCHH
Q 013128 206 MTFKTLALDSELKREITEDLENFMNG----------KEYYTR------IG------------RAWKRGYLLYGPPGTGKS 257 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~----------~~~~~~------~g------------~~~~rg~LL~GPpGtGKT 257 (449)
.+|+++.+..+.|+.+++.+..++.+ ++.++. .| .|..+.+|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 67999999999999999999988844 445555 22 333444999999999999
Q ss_pred HHHHHHHHHcC---CcEEEEeccc----------------cc------ChHHHHHHHH--cCCCCceEEeeccchhhhcc
Q 013128 258 SLIAAMANQLK---FDIYDLDLSA----------------VQ------SNSELRFLLL--TMPSRSMLVIEDIDCSVKLQ 310 (449)
Q Consensus 258 ~la~aiA~~l~---~~~~~l~~s~----------------~~------~~~~l~~~~~--~~~~~~Il~iDeiD~l~~~~ 310 (449)
+||.++|.+.. -+...++... +. ++..++.++. +...+++|++|++|++.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 99999999873 3333333322 11 2334443333 34579999999999998753
Q ss_pred cccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCC
Q 013128 311 NRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHK 356 (449)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~ 356 (449)
..++. ....+.....+.++++|..||++... .+++|| +||+.
T Consensus 1177 ~~~g~-~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGE-IGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHSC-TTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred ccccc-cccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 31111 10001234456799999999987653 345555 77764
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.92 E-value=1.8e-09 Score=94.75 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=47.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhh
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
...++|+||+|+|||+|++++++.+ |..++.++...+... ....++.||+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccC
Confidence 5679999999999999999999998 777888887776544 113468999999998753
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.87 E-value=3.4e-08 Score=97.35 Aligned_cols=174 Identities=17% Similarity=0.113 Sum_probs=102.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc-----c
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV-----Q 280 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~-----~ 280 (449)
..-+.++|-++..+.+.+ +. . +.++|+||+|+|||+|++.+++.++..++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345678888777666654 32 1 479999999999999999999999877777776542 0
Q ss_pred Ch--------------------------------------------------HHHHHHHHcCC-CCceEEeeccchhhhc
Q 013128 281 SN--------------------------------------------------SELRFLLLTMP-SRSMLVIEDIDCSVKL 309 (449)
Q Consensus 281 ~~--------------------------------------------------~~l~~~~~~~~-~~~Il~iDeiD~l~~~ 309 (449)
+. ..+...+.... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 10 11222233322 3889999999987531
Q ss_pred ccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC---------CCCccccCCCccceEEEeCCCCH
Q 013128 310 QNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE---------KLDPALLRPGRMDMHLHMSYCNT 380 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~---------~ld~aLlrpgR~d~~i~l~~p~~ 380 (449)
.. ......+..+. +.. .++.+|+|+.... .....+ .||+...++++..+.
T Consensus 153 ~~-----------~~~~~~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~ 211 (357)
T 2fna_A 153 RG-----------VNLLPALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSR 211 (357)
T ss_dssp TT-----------CCCHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCH
T ss_pred Cc-----------hhHHHHHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCH
Confidence 00 01111222222 211 2355666665432 111222 247667899999999
Q ss_pred HHHHHHHHHHhCcCCCCCHHHHHHHHHccCCCHHHHHH
Q 013128 381 SVFKQLAFNYLGISHHYLFEQIEELIKEVNVTPAEVAG 418 (449)
Q Consensus 381 ~~r~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~ 418 (449)
++..+++...++..+....+. ..+....+=.|.-+..
T Consensus 212 ~e~~~~l~~~~~~~~~~~~~~-~~i~~~t~G~P~~l~~ 248 (357)
T 2fna_A 212 EEAIEFLRRGFQEADIDFKDY-EVVYEKIGGIPGWLTY 248 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCCH-HHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcH-HHHHHHhCCCHHHHHH
Confidence 999999987654211111111 4455555555654443
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.83 E-value=2.4e-08 Score=121.87 Aligned_cols=135 Identities=18% Similarity=0.332 Sum_probs=94.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEecccccChHHHHHHHHc------C------------CCCceEEeecc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDLSAVQSNSELRFLLLT------M------------PSRSMLVIEDI 303 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~~~~~~l~~~~~~------~------------~~~~Il~iDei 303 (449)
++++||+||||||||++++.....+ +.+++.++++.-.+...+...+.. . .+..|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 4689999999999998886655544 778889999998887777666542 1 12469999999
Q ss_pred chhhhcccccchhhhhccchhhHHHHHHHHHHhc--CccccCC------CCeEEEEEcCCC-----CCCCccccCCCccc
Q 013128 304 DCSVKLQNRESSEVQATNQEENKVTLSGLLNFID--GLWSCCG------EGRIIVFTTNHK-----EKLDPALLRPGRMD 370 (449)
Q Consensus 304 D~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld--g~~~~~~------~~~iiI~tTN~~-----~~ld~aLlrpgR~d 370 (449)
+.... +. ...+..+.-|...+| |.+.... ..+.+|+|+|++ ..|+++|+| ||.
T Consensus 1384 Nmp~~--D~----------yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1384 NLPST--DK----------YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp TCCCC--CT----------TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred CCCCc--cc----------cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 86422 11 111223444445555 2222111 346789999988 358999999 995
Q ss_pred eEEEeCCCCHHHHHHHHHHHhC
Q 013128 371 MHLHMSYCNTSVFKQLAFNYLG 392 (449)
Q Consensus 371 ~~i~l~~p~~~~r~~l~~~~l~ 392 (449)
+ +.+++|+.++...|+..++.
T Consensus 1450 v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 I-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp E-EECCCCCHHHHHHHHHHHHH
T ss_pred E-EEeCCCCHHHHHHHHHHHHH
Confidence 5 99999999999999876653
No 94
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.82 E-value=7.4e-09 Score=95.25 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=78.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc--------C-CcEEEEecccccC---------------------hHHHHHHHH-cC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL--------K-FDIYDLDLSAVQS---------------------NSELRFLLL-TM 292 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l--------~-~~~~~l~~s~~~~---------------------~~~l~~~~~-~~ 292 (449)
-.+|++|+||||||++|.+++... | .+++..++..+.. ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 468999999999999998875443 3 6676665543321 012222210 12
Q ss_pred CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceE
Q 013128 293 PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMH 372 (449)
Q Consensus 293 ~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~ 372 (449)
..++||+|||++.+.+.+... . +. ..++..+..- .....-||++|++++.|+.++.. |++.+
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~-~-------e~-----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--ri~~~ 147 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAG-S-------KI-----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--LVRKH 147 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTT-C-------CC-----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--TEEEE
T ss_pred cCceEEEEEChhhhccCcccc-c-------hh-----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--HhheE
Confidence 358999999999986532111 0 00 1255555432 23456788888889999999988 99999
Q ss_pred EEeCCCCHH
Q 013128 373 LHMSYCNTS 381 (449)
Q Consensus 373 i~l~~p~~~ 381 (449)
++++.+...
T Consensus 148 ~~l~~~~~~ 156 (199)
T 2r2a_A 148 YHIASNKMG 156 (199)
T ss_dssp EEEEECSSC
T ss_pred EEEcCcccC
Confidence 999876543
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.78 E-value=9.3e-07 Score=86.79 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=105.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccccc---
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQ--- 280 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 280 (449)
++..-+.++|.++..+.+.+.+.. ++.++|+||+|+|||+|++.+++..+ .+.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344456789988888877765532 15799999999999999999999986 5556553321
Q ss_pred ---Ch---------------------------------------HHHHHHHHcC---CCCceEEeeccchhhhcccccch
Q 013128 281 ---SN---------------------------------------SELRFLLLTM---PSRSMLVIEDIDCSVKLQNRESS 315 (449)
Q Consensus 281 ---~~---------------------------------------~~l~~~~~~~---~~~~Il~iDeiD~l~~~~~~~~~ 315 (449)
+. ..+...+... ..|.+|+|||++.+.....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---- 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---- 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----
Confidence 10 1111111111 1389999999998753100
Q ss_pred hhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC---------CCCccccCCCccceEEEeCCCCHHHHHHH
Q 013128 316 EVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE---------KLDPALLRPGRMDMHLHMSYCNTSVFKQL 386 (449)
Q Consensus 316 ~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~---------~ld~aLlrpgR~d~~i~l~~p~~~~r~~l 386 (449)
......+..|-..++.. ..+.+|+|+.... .....+. ||....+++++.+.++..++
T Consensus 146 -------~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~ 211 (350)
T 2qen_A 146 -------RGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEF 211 (350)
T ss_dssp -------TTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHH
T ss_pred -------cchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHH
Confidence 00111222222333321 2455566654321 1122232 46667899999999999999
Q ss_pred HHHHhCcCCCCC-HHHHHHHHHccCCCHHHHHH
Q 013128 387 AFNYLGISHHYL-FEQIEELIKEVNVTPAEVAG 418 (449)
Q Consensus 387 ~~~~l~~~~~~l-~~~i~~l~~~~~~tpa~i~~ 418 (449)
+...+...+... .+.+..+....+=.|.-+..
T Consensus 212 l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~ 244 (350)
T 2qen_A 212 LKRGFREVNLDVPENEIEEAVELLDGIPGWLVV 244 (350)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 988765433333 34555666666666655543
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.74 E-value=4.4e-08 Score=93.73 Aligned_cols=119 Identities=17% Similarity=0.251 Sum_probs=69.8
Q ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhc
Q 013128 241 AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQAT 320 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~ 320 (449)
+++++++||||||||||+++.|+|+.+.. .-.++.+. . ...+.....+.|++.||....-.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~---~f~l~~~~~k~i~l~Ee~~~~~d------------ 162 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---E---NFPFNDCVDKMVIWWEEGKMTAK------------ 162 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---S---SCTTGGGSSCSEEEECSCCEETT------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---c---ccccccccccEEEEeccccchhH------------
Confidence 44678999999999999999999998755 22223221 1 11344445667777777765321
Q ss_pred cchhhHHHHHHHHHHhcCcccc----CC-----CCeEEEEEcCC-C----------CCCCccccCCCccceEEEeC----
Q 013128 321 NQEENKVTLSGLLNFIDGLWSC----CG-----EGRIIVFTTNH-K----------EKLDPALLRPGRMDMHLHMS---- 376 (449)
Q Consensus 321 ~~~~~~~~ls~LL~~ldg~~~~----~~-----~~~iiI~tTN~-~----------~~ld~aLlrpgR~d~~i~l~---- 376 (449)
.... +-+.++|-.-. .. ....+|+|||. + +...++|.+ |+ ..+.|+
T Consensus 163 ----~~~~---lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p 232 (267)
T 1u0j_A 163 ----VVES---AKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLD 232 (267)
T ss_dssp ----THHH---HHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCC
T ss_pred ----HHHH---HHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCC
Confidence 0011 22233421110 00 23467788886 2 245578888 87 668887
Q ss_pred ----CCCHHHHHHHHH
Q 013128 377 ----YCNTSVFKQLAF 388 (449)
Q Consensus 377 ----~p~~~~r~~l~~ 388 (449)
..+.++-+..+.
T Consensus 233 ~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFR 248 (267)
T ss_dssp TTSCCCCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHH
Confidence 456666666555
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.73 E-value=4.3e-09 Score=103.20 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=63.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc--EEEEecc----ccc-C-hHHH---HHHHHcCCCCceEEeeccchhh
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD--IYDLDLS----AVQ-S-NSEL---RFLLLTMPSRSMLVIEDIDCSV 307 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~s----~~~-~-~~~l---~~~~~~~~~~~Il~iDeiD~l~ 307 (449)
|.+.++.++|+||||||||+|+.++|...+.. ++.+... ... + +..+ ...+.+. + +||||+++.+.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVI 195 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEecccccc
Confidence 44445668999999999999999999876544 4444111 111 1 1112 2223322 3 99999999985
Q ss_pred hcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccc
Q 013128 308 KLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPAL 363 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aL 363 (449)
......+ ........+.+++..|+++... .++.+|++|| +...|+++
T Consensus 196 ~~~~~~s------~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 196 GAAGGNT------TSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ccccccc------ccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 4221100 0011133455666666555332 3467788888 56666664
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.72 E-value=8.4e-08 Score=116.44 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=95.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCC-CCceEEeeccchhhhcccccchhhhhcc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATN 321 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~ 321 (449)
..|.+++||||||||++++++|+.+|.+++.++|+.-.+...+...|.... .++.+++|||+.+-.. .
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~e-------v---- 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEK-------V---- 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHH-------H----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChH-------H----
Confidence 468999999999999999999999999999999999888888887776654 4799999999986420 0
Q ss_pred chhhHHHHHHHHHHhc---------CccccCCCCeEEEEEcC----CCCCCCccccCCCccceEEEeCCCCHHHHHHHHH
Q 013128 322 QEENKVTLSGLLNFID---------GLWSCCGEGRIIVFTTN----HKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAF 388 (449)
Q Consensus 322 ~~~~~~~ls~LL~~ld---------g~~~~~~~~~iiI~tTN----~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~ 388 (449)
-......+..+++.+. |..-.......|++|.| ....|+++|.+ || +.|.|.+|+.+...++..
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHH
Confidence 0000111111222221 11111123456788888 34679999998 88 689999999988777754
Q ss_pred H
Q 013128 389 N 389 (449)
Q Consensus 389 ~ 389 (449)
.
T Consensus 791 ~ 791 (2695)
T 4akg_A 791 Q 791 (2695)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.71 E-value=2.6e-07 Score=93.56 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=107.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEecccccChHH
Q 013128 208 FKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSAVQSNSE 284 (449)
Q Consensus 208 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~~~ 284 (449)
++.++|.....+.+.+.+..... ....+||+|++||||+++|+++..... .+++.++|+.+..+.-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC-----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT-----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC-----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 44567776666777776655322 135689999999999999999998874 6899999998754322
Q ss_pred HHHHHHc-----------------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-ccccCC--
Q 013128 285 LRFLLLT-----------------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-LWSCCG-- 344 (449)
Q Consensus 285 l~~~~~~-----------------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~~~-- 344 (449)
-..+|.. ....++||||||+.+.. .....||..++. .....|
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------~~q~~Ll~~l~~~~~~~~g~~ 266 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL------------------EAQAKLLRVIESGKFYRLGGR 266 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH------------------HHHHHHHHHHHHSEECCBTCC
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH------------------HHHHHHHHHHhcCcEEeCCCC
Confidence 2223321 12467999999998843 233446666652 111111
Q ss_pred ----CCeEEEEEcCCC-------CCCCccccCCCcc-ceEEEeCCCCH--HHHHHHHHHHhCcC-------CCCCHHHHH
Q 013128 345 ----EGRIIVFTTNHK-------EKLDPALLRPGRM-DMHLHMSYCNT--SVFKQLAFNYLGIS-------HHYLFEQIE 403 (449)
Q Consensus 345 ----~~~iiI~tTN~~-------~~ld~aLlrpgR~-d~~i~l~~p~~--~~r~~l~~~~l~~~-------~~~l~~~i~ 403 (449)
-.+-||+|||.. ..+.+.|.- |+ ...|++|+... ++...|+..|+... ...+.++..
T Consensus 267 ~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 344 (387)
T 1ny5_A 267 KEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQ 344 (387)
T ss_dssp SBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHH
T ss_pred ceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 235688888863 233444443 44 35688888754 77777887777431 112445555
Q ss_pred HHHHccCCC
Q 013128 404 ELIKEVNVT 412 (449)
Q Consensus 404 ~l~~~~~~t 412 (449)
+.+....|.
T Consensus 345 ~~l~~~~wp 353 (387)
T 1ny5_A 345 ELLLSYPWY 353 (387)
T ss_dssp HHHHHSCCT
T ss_pred HHHHhCCCC
Confidence 555555553
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.68 E-value=4.8e-07 Score=90.98 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=98.0
Q ss_pred cccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCc--EEEEecccccChHHHHH
Q 013128 210 TLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFD--IYDLDLSAVQSNSELRF 287 (449)
Q Consensus 210 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~s~~~~~~~l~~ 287 (449)
.++|.......+.+.+...... ...+|++|++||||+.+++++....+.. ++.++|+.+..+.-...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhcc-----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4667666666666655443321 3469999999999999999999887543 99999998865433333
Q ss_pred HHHc-----------------CCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcC-ccccCCC----
Q 013128 288 LLLT-----------------MPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDG-LWSCCGE---- 345 (449)
Q Consensus 288 ~~~~-----------------~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~~~~---- 345 (449)
+|.. ....+.||||||+.+.. .....||..++. .....|+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ------------------RVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH------------------HHHHHHHHHHHHSEECCBTCCCBE
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH------------------HHHHHHHHHHHhCCcccCCCCcce
Confidence 3321 12457899999999843 234456777652 1111111
Q ss_pred --CeEEEEEcCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHHhC
Q 013128 346 --GRIIVFTTNHK-------EKLDPALLRPGRMD-MHLHMSYCNT--SVFKQLAFNYLG 392 (449)
Q Consensus 346 --~~iiI~tTN~~-------~~ld~aLlrpgR~d-~~i~l~~p~~--~~r~~l~~~~l~ 392 (449)
.+-+|+|||.. ..+.+.|.. |+. ..|++|+... ++...|+..|+.
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 34577777753 223334443 443 3688998877 778888887774
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.45 E-value=2.1e-07 Score=95.46 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=83.0
Q ss_pred ccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHH-HHHcCCcEEEEecccccChHHHHHH-
Q 013128 211 LALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAM-ANQLKFDIYDLDLSAVQSNSELRFL- 288 (449)
Q Consensus 211 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~ai-A~~l~~~~~~l~~s~~~~~~~l~~~- 288 (449)
+.|.+++|+.+.-.+ ..+-.. ....-++||.|+||| ||++++++ ++.+....|..... .+...+...
T Consensus 215 I~G~e~vK~aLll~L---~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL---FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHH---TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHH---cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 788888887775443 221100 011226999999999 99999999 77766555432211 111111000
Q ss_pred -----------HHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhc-------CccccCCCCeEEE
Q 013128 289 -----------LLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFID-------GLWSCCGEGRIIV 350 (449)
Q Consensus 289 -----------~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-------g~~~~~~~~~iiI 350 (449)
........|++||||+.+.. .+.+.|+..|+ |. ..+....||
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~------------------~~qsaLlEaMEe~~VtI~G~--~lparf~VI 343 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAPE------------------PHRWALMEAMDKGTVTVDGI--ALNARCAVL 343 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCCH------------------HHHHHHHHHHHHSEEEETTE--EEECCCEEE
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCCH------------------HHHHHHHHHHhCCcEEECCE--EcCCCeEEE
Confidence 00013468999999998742 35566777765 22 223457899
Q ss_pred EEcCCCC-----------CCCccccCCCccceEEE-eCCCCHHH
Q 013128 351 FTTNHKE-----------KLDPALLRPGRMDMHLH-MSYCNTSV 382 (449)
Q Consensus 351 ~tTN~~~-----------~ld~aLlrpgR~d~~i~-l~~p~~~~ 382 (449)
+|+|..+ .|+++++. |||..+. +++|+.+.
T Consensus 344 AA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 344 AAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred EEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 9999875 78899999 9987554 56776543
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.35 E-value=1.8e-06 Score=105.80 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=94.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHcCC-CCceEEeeccchhhhcccccchhhhhccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAVQSNSELRFLLLTMP-SRSMLVIEDIDCSVKLQNRESSEVQATNQ 322 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~~~~~~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~~ 322 (449)
.|..+.||+|||||.+++.+|+.+|..++.++|+.-.+...+.++|.... .++..++|||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~-------------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE-------------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH--------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH--------------
Confidence 46689999999999999999999999999999999888877877776654 578899999998732
Q ss_pred hhhHHHHHHHHH----Hh---------c-CccccCCCCeEEEEEcCC----CCCCCccccCCCccceEEEeCCCCHHHHH
Q 013128 323 EENKVTLSGLLN----FI---------D-GLWSCCGEGRIIVFTTNH----KEKLDPALLRPGRMDMHLHMSYCNTSVFK 384 (449)
Q Consensus 323 ~~~~~~ls~LL~----~l---------d-g~~~~~~~~~iiI~tTN~----~~~ld~aLlrpgR~d~~i~l~~p~~~~r~ 384 (449)
+.. ..+++.+. .+ + |-.-......-|++|.|. ...|+++|.. || +.|.|+.|+.+...
T Consensus 671 ~vL-Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 RIL-SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 111 11111111 11 1 211111234567888884 4689999999 88 66999999998887
Q ss_pred HHHHHHhCc
Q 013128 385 QLAFNYLGI 393 (449)
Q Consensus 385 ~l~~~~l~~ 393 (449)
++.-.-.|.
T Consensus 747 ei~L~s~Gf 755 (3245)
T 3vkg_A 747 QVMLYSQGF 755 (3245)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHccc
Confidence 776544443
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.30 E-value=5.9e-07 Score=106.05 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=69.0
Q ss_pred CCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc---------------------ChHHHHH---HHHcC
Q 013128 240 RAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ---------------------SNSELRF---LLLTM 292 (449)
Q Consensus 240 ~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~---------------------~~~~l~~---~~~~~ 292 (449)
++.+++++||||||||||+||.++|.+. |..+..++..... ....+.. .+.+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7778899999999999999999998876 4556666554321 1112222 23334
Q ss_pred CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC
Q 013128 293 PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH 355 (449)
Q Consensus 293 ~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~ 355 (449)
.++++||||+++.+.+....++. ..........+.++++|..|++.... .+ ++|.+||.
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~-~~~~~~~~~~R~lsqlL~~L~~~~~~--~~-v~VI~tNq 1562 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGE-IGDSHMGLAARMMSQAMRKLAGNLKQ--SN-TLLIFINQ 1562 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSC-TTCCCTTHHHHHHHHHHHHHHHHHHT--TT-CEEEEEEC
T ss_pred CCCCEEEEcChhHhccccccccc-ccccccchHHHHHHHHHHHHHHHHHh--CC-cEEEEEcc
Confidence 68999999999988763211110 00001111345678888888877653 33 44555554
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.05 E-value=2e-05 Score=77.96 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=81.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CC-c--EEEEecccccChHHHHHHHHc---CCCCceEEeeccch-hhhcccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KF-D--IYDLDLSAVQSNSELRFLLLT---MPSRSMLVIEDIDC-SVKLQNR 312 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~-~--~~~l~~s~~~~~~~l~~~~~~---~~~~~Il~iDeiD~-l~~~~~~ 312 (449)
...||||||+|+||++.++++++.+ +. + ++.++ .-.+-.++...... ....-|++|||++. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~---- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID--PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA---- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC--TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT----
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec--CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh----
Confidence 5689999999999999999999876 33 2 33333 21222233222221 24678999999987 521
Q ss_pred cchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC------CCCccccCCCccceEEEeCCCCHHHHHHH
Q 013128 313 ESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE------KLDPALLRPGRMDMHLHMSYCNTSVFKQL 386 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~------~ld~aLlrpgR~d~~i~l~~p~~~~r~~l 386 (449)
...+.|+..++.. +...++|++++.++ .+-+++.. |. ..+.+..++.++....
T Consensus 92 --------------~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 92 --------------AINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp --------------THHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred --------------HHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 2345578888753 34456666555533 45567777 54 5688999998888888
Q ss_pred HHHHhCcCC
Q 013128 387 AFNYLGISH 395 (449)
Q Consensus 387 ~~~~l~~~~ 395 (449)
++..+..++
T Consensus 151 l~~~~~~~g 159 (343)
T 1jr3_D 151 VAARAKQLN 159 (343)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 877765443
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.02 E-value=1.7e-05 Score=71.23 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=23.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.+.|.||+|+|||||++.|++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999999865443
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.01 E-value=8.9e-05 Score=78.55 Aligned_cols=162 Identities=21% Similarity=0.233 Sum_probs=90.7
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHH-------cCCcEEEEecccc
Q 013128 207 TFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQ-------LKFDIYDLDLSAV 279 (449)
Q Consensus 207 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~-------l~~~~~~l~~s~~ 279 (449)
....++|.+...+.|.+.+..- ....+-++|+||+|+|||+||..+++. +...++.++++..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 3456889888888777655321 012456899999999999999998753 2223454444322
Q ss_pred cCh-------------------------------HHHHHHHHcCCCCceEEeeccchhhhcccccchhhhhccchhhHHH
Q 013128 280 QSN-------------------------------SELRFLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVT 328 (449)
Q Consensus 280 ~~~-------------------------------~~l~~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ 328 (449)
... ..+...+....++.+|||||++...
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------- 249 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------- 249 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------------------
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------------------
Confidence 100 1122223333368999999997421
Q ss_pred HHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEe-CCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHH
Q 013128 329 LSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHM-SYCNTSVFKQLAFNYLGISHHYLFEQIEELIK 407 (449)
Q Consensus 329 ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l-~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~ 407 (449)
.+..+ +.+..||+||........ .. |.. ..+.. ...+.++-.+++....+.......+...++++
T Consensus 250 ---~l~~l-------~~~~~ilvTsR~~~~~~~--~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~ 315 (591)
T 1z6t_A 250 ---VLKAF-------DSQCQILLTTRDKSVTDS--VM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIK 315 (591)
T ss_dssp ---HHHTT-------CSSCEEEEEESCGGGGTT--CC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHH
T ss_pred ---HHHHh-------cCCCeEEEECCCcHHHHh--cC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 12222 123466667765432111 11 222 22332 46888888999998886532223344555555
Q ss_pred ccCCCHH
Q 013128 408 EVNVTPA 414 (449)
Q Consensus 408 ~~~~tpa 414 (449)
..+--|.
T Consensus 316 ~~~G~PL 322 (591)
T 1z6t_A 316 ECKGSPL 322 (591)
T ss_dssp HHTTCHH
T ss_pred HhCCCcH
Confidence 5554453
No 107
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.82 E-value=0.00017 Score=82.40 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc-------CCcEEEEec
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL-------KFDIYDLDL 276 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-------~~~~~~l~~ 276 (449)
.|.....++|.++..++|.+.+... . ...+-+.|+|++|+|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~--~---------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL--N---------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT--T---------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc--c---------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 3455567899998888887766321 0 113568899999999999999988762 223445555
Q ss_pred ccccC---------------------------hHHHH----HHHHcCCCCceEEeeccchhhhcccccchhhhhccchhh
Q 013128 277 SAVQS---------------------------NSELR----FLLLTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEEN 325 (449)
Q Consensus 277 s~~~~---------------------------~~~l~----~~~~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~ 325 (449)
+.... ...+. ..+....++.+|||||++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 44211 01111 111122348999999998531
Q ss_pred HHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCC-CCHHHHHHHHHHHhCcCCCCCHHHHHH
Q 013128 326 KVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSY-CNTSVFKQLAFNYLGISHHYLFEQIEE 404 (449)
Q Consensus 326 ~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~-p~~~~r~~l~~~~l~~~~~~l~~~i~~ 404 (449)
.+..+ +.+.-||.||..+.-... .. .....+.++. ++.++-.+|+..+.......+.+...+
T Consensus 250 ------~~~~~-------~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~ 312 (1249)
T 3sfz_A 250 ------VLKAF-------DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHS 312 (1249)
T ss_dssp ------HHTTT-------CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHH
T ss_pred ------HHHhh-------cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHH
Confidence 11111 123457777776543321 11 1234577775 888888999988876554444444555
Q ss_pred HHHccCCCH
Q 013128 405 LIKEVNVTP 413 (449)
Q Consensus 405 l~~~~~~tp 413 (449)
+++..+--|
T Consensus 313 i~~~~~glP 321 (1249)
T 3sfz_A 313 IIKECKGSP 321 (1249)
T ss_dssp HHHHTTTCH
T ss_pred HHHHhCCCH
Confidence 555544334
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=0.00013 Score=75.32 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=40.3
Q ss_pred ccccccccccCCCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CC
Q 013128 193 MRWDANNIVLKHPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KF 269 (449)
Q Consensus 193 ~~w~~~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~ 269 (449)
..|.. ...|.+|++| .+++++.+.. +..++... ...++|.||||||||+++.+++..+ +.
T Consensus 12 ~~~~~----~~~p~~~~~L--n~~Q~~av~~-~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 12 SGLVP----RGSHMTFDDL--TEGQKNAFNI-VMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp -------------CCSSCC--CHHHHHHHHH-HHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCcc----ccCCCccccC--CHHHHHHHHH-HHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 45654 7888999886 4556555443 33344322 2379999999999999999999888 33
Q ss_pred -cEEEEecc
Q 013128 270 -DIYDLDLS 277 (449)
Q Consensus 270 -~~~~l~~s 277 (449)
.++.+..+
T Consensus 75 ~~il~~a~T 83 (459)
T 3upu_A 75 TGIILAAPT 83 (459)
T ss_dssp CCEEEEESS
T ss_pred ceEEEecCc
Confidence 45555433
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.71 E-value=0.00017 Score=65.88 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=31.9
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 278 (449)
|++.+.-++|+||||+|||+++..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555667999999999999999999985566777776543
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.68 E-value=2.1e-05 Score=70.19 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=29.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
++.++|.||||||||++++.+|..+++++++.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999988754
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.63 E-value=4.2e-05 Score=67.71 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLS 277 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s 277 (449)
+..++|.||||+||||+++++|..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35689999999999999999999999988877654
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=3.2e-05 Score=70.24 Aligned_cols=33 Identities=36% Similarity=0.458 Sum_probs=29.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
...++|.|||||||||+++++|..+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 457999999999999999999999999887654
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.60 E-value=0.00016 Score=72.04 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=47.4
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC---------------------hHHHH---HHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS---------------------NSELR---FLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~---------------------~~~l~---~~~~~ 291 (449)
|++...-++|+||||+|||+|+..+|..+ +..++.++...... ..++. ..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45556679999999999999999999875 55666666543211 11111 11223
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 35688999999988764
No 114
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=0.00012 Score=71.85 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=31.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 278 (449)
|++.+.-++|+||||+|||+++..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 55666679999999999999999999875 45666666544
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=0.00038 Score=63.80 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=27.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
|++.+..++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34445668999999999999999999765 34444443
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.58 E-value=6.1e-05 Score=66.01 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=28.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
-++|.||||+||||+++.++..+++.+++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47899999999999999999999999887663
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.57 E-value=0.00023 Score=70.61 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=31.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---------CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---------KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 278 (449)
|++.+.-++|+||||+|||+++..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 55666669999999999999999999873 45666666544
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=0.0002 Score=66.39 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=30.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH--c-------CCcEEEEeccc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ--L-------KFDIYDLDLSA 278 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~--l-------~~~~~~l~~s~ 278 (449)
|++.+.-++|+||||+|||+|+..+|.. + +...+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4555667999999999999999999995 3 34566665543
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.56 E-value=3.6e-05 Score=68.96 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.0
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.+.-++|.|+||+||||+++.++..+++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 355689999999999999999999999887764
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.55 E-value=0.00017 Score=71.65 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=46.9
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC---------------------hHHHH---HHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS---------------------NSELR---FLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~---------------------~~~l~---~~~~~ 291 (449)
|++.++.++|+||||+|||+|+..+|..+ +..+..++...... ..++. ..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556679999999999999999998765 45666665433211 11111 22333
Q ss_pred CCCCceEEeeccchhh
Q 013128 292 MPSRSMLVIEDIDCSV 307 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~ 307 (449)
...+.+||||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 4568999999999886
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.51 E-value=0.00023 Score=65.36 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.6
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
|++...-+.|.||+|+|||+|++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555669999999999999999999855
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.50 E-value=0.00018 Score=85.37 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=53.1
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccCh------------------------HHHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQSN------------------------SELRFLLLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~------------------------~~l~~~~~~ 291 (449)
|++.++.+||+||||||||+|+.+++.+. |.....+++...... ..+...+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57777889999999999999999998765 677777776654221 123334555
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 67899999999999854
No 123
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.50 E-value=0.00027 Score=70.27 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.6
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
|++.+.-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55666679999999999999999999987
No 124
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.48 E-value=0.00014 Score=72.51 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=48.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccccc---------------------ChHHHHHHH---Hc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQ---------------------SNSELRFLL---LT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~---------------------~~~~l~~~~---~~ 291 (449)
|++.++.++|+||||+|||+||..+|..+ +..++.++..... +...+...+ ..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45566779999999999999999998775 5667777653221 112222222 22
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 35688999999998863
No 125
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.48 E-value=5.6e-05 Score=67.22 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=29.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
++.++|.||||+|||++++++|..+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 456999999999999999999999998887653
No 126
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.46 E-value=5.7e-05 Score=66.95 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=27.4
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.++|.||||+||||+++++|..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887764
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.46 E-value=0.00047 Score=64.07 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMA 264 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA 264 (449)
|++.+.-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44455669999999999999999998
No 128
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.45 E-value=0.00043 Score=69.26 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=47.9
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC---------------------hHHHHHH---HHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS---------------------NSELRFL---LLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~---------------------~~~l~~~---~~~ 291 (449)
|++.++.++|+||||+|||+|+..+|..+ +..+..++...-.. ...+... +..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45556679999999999999999988775 56666666543211 1122222 223
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+||||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 35688999999998863
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.45 E-value=6.8e-05 Score=66.85 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=28.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..|+|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999987654
No 130
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.43 E-value=7.5e-05 Score=65.75 Aligned_cols=31 Identities=42% Similarity=0.735 Sum_probs=27.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..+.|.|||||||||+++.+|..++..+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4689999999999999999999999876653
No 131
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.43 E-value=7e-05 Score=67.15 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=28.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH-cCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ-LKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~-l~~~~~~l~ 275 (449)
+..++|.|+||||||++++.+|.. +|+++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 346999999999999999999999 788877654
No 132
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.42 E-value=7.4e-05 Score=65.67 Aligned_cols=32 Identities=38% Similarity=0.564 Sum_probs=29.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..++|.|+|||||||+++.+|..+++++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999988754
No 133
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.42 E-value=5e-05 Score=68.49 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=23.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l 274 (449)
.-++++||||+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999997676654 5554433
No 134
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.37 E-value=0.0044 Score=65.11 Aligned_cols=160 Identities=13% Similarity=0.085 Sum_probs=89.9
Q ss_pred cCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHH----HcC--Cc-EEEEeccccc----
Q 013128 212 ALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMAN----QLK--FD-IYDLDLSAVQ---- 280 (449)
Q Consensus 212 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~----~l~--~~-~~~l~~s~~~---- 280 (449)
+|.++.+++|.+.+..-- ....+.+.|+|++|+|||+||+.+++ ... ++ .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 488888888888774311 11245688999999999999999997 232 22 2233433311
Q ss_pred --------------------------ChHHHHHHHH-c-CC-CCceEEeeccchhhhcccccchhhhhccchhhHHHHHH
Q 013128 281 --------------------------SNSELRFLLL-T-MP-SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSG 331 (449)
Q Consensus 281 --------------------------~~~~l~~~~~-~-~~-~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (449)
+...+...+. . .. ++.+|||||++.... + .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--------------------~-~ 259 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--------------------I-R 259 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--------------------H-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--------------------h-c
Confidence 0011122221 1 13 389999999986321 0 1
Q ss_pred HHHHhcCccccCCCCeEEEEEcCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC--CCCHHHHHHHHHcc
Q 013128 332 LLNFIDGLWSCCGEGRIIVFTTNHKEKLDPALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH--HYLFEQIEELIKEV 409 (449)
Q Consensus 332 LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~--~~l~~~i~~l~~~~ 409 (449)
+.. . .+..||.||....-. ..- +.....+.++..+.++-.+|+........ ..+.+...++++.-
T Consensus 260 ~~~-~--------~gs~ilvTTR~~~v~---~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c 326 (549)
T 2a5y_B 260 WAQ-E--------LRLRCLVTTRDVEIS---NAA-SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS 326 (549)
T ss_dssp HHH-H--------TTCEEEEEESBGGGG---GGC-CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH
T ss_pred ccc-c--------CCCEEEEEcCCHHHH---HHc-CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 111 1 223566777653221 110 11335689999999999999998854332 12223345555555
Q ss_pred CCCHHH
Q 013128 410 NVTPAE 415 (449)
Q Consensus 410 ~~tpa~ 415 (449)
+--|--
T Consensus 327 ~GlPLA 332 (549)
T 2a5y_B 327 SGNPAT 332 (549)
T ss_dssp TTCHHH
T ss_pred CCChHH
Confidence 555533
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00026 Score=68.36 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
+..++|.||||+||||+++.++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4568999999999999999999998545566654
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.36 E-value=0.00011 Score=69.66 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=29.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
-++|.||||||||++++++|..+++.++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 137
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.34 E-value=9.7e-05 Score=64.93 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=28.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..++|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999999877643
No 138
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.00012 Score=66.30 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=28.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..|+|.||||+||||+++.++..+++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 45889999999999999999999999887663
No 139
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=0.00011 Score=64.14 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=26.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
-++|.||||+||||+++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 9999987765
No 140
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.31 E-value=0.0005 Score=72.90 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 211 LALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 211 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
....+++++.+...+ . .+.+++.||||||||+++.+++..+ +..+..+..+
T Consensus 188 ~~L~~~Q~~Av~~~~----~------------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 188 KGLSEEQASVLDQLA----G------------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp TTCCHHHHHHHHHHT----T------------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCHHHHHHHHHHH----h------------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 345667776664432 1 3568999999999999999999866 5666655443
No 141
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=0.00011 Score=65.55 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=28.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+.-|+|.|+|||||||+++.++..++..+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 35689999999999999999999999877654
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.30 E-value=0.00046 Score=65.99 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=24.1
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44445669999999999999999999755
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.27 E-value=0.00016 Score=65.55 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=28.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-++|.||||+||||+++.++..+++.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346999999999999999999999988776543
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=0.00013 Score=65.42 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=29.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-++|.||||+||||+++.+|..++..+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999998877654
No 145
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.26 E-value=0.00012 Score=67.50 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=28.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..++|.|+||+||||+++.+|..+++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999888765
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.25 E-value=0.00015 Score=63.47 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.++|.|+||+||||+++.++..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999999887654
No 147
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.25 E-value=0.0005 Score=67.21 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.2
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
|++.+.-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666999999999999999999976
No 148
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.24 E-value=0.00014 Score=64.81 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=28.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-++|.|+|||||||+++.++..+++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 456899999999999999999999998777653
No 149
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00012 Score=65.22 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=27.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..++|.||||+||||+++.+|..+++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999999876654
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.23 E-value=0.00013 Score=65.06 Aligned_cols=30 Identities=17% Similarity=0.436 Sum_probs=26.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC-----CcEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK-----FDIYD 273 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~ 273 (449)
.-++|.||||+||||+++.++..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4689999999999999999999997 66554
No 151
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.22 E-value=9.9e-05 Score=65.14 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHH-HcCCcEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMAN-QLKFDIY 272 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~-~l~~~~~ 272 (449)
.-++|.||||+||||+++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999999 4655444
No 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.22 E-value=0.0018 Score=72.56 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc------CCcEEEEeccc
Q 013128 212 ALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL------KFDIYDLDLSA 278 (449)
Q Consensus 212 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~l~~s~ 278 (449)
+|.++..+.|.+.+... ...+-+.|+||.|+|||+||+.+++.. ...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 78888888887766421 113578899999999999999998643 33455555443
No 153
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00017 Score=66.03 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=26.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999888766
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00015 Score=64.84 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=28.9
Q ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 241 AWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
..+..+.|.||||+||||+++.++..++...+.++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 334568999999999999999999987666655554
No 155
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.21 E-value=0.00015 Score=65.25 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=28.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-|+|.||||+||||+++.+|..+++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999998776653
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.20 E-value=0.00019 Score=66.08 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..++|.||||+||||+++.+|..++..+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4589999999999999999999999877765
No 157
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.0004 Score=65.55 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+..++|.||||+||||+++.++..++...+.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4568999999999999999999999866666665544
No 158
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00016 Score=67.01 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=28.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+.-++|.||||+||||+++.+|..++..+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35689999999999999999999999877765
No 159
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00019 Score=65.71 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=26.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999888766
No 160
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.17 E-value=0.00086 Score=67.84 Aligned_cols=28 Identities=32% Similarity=0.256 Sum_probs=23.2
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
|++...-++|+||||+|||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5566666999999999999999977644
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.16 E-value=0.00024 Score=62.63 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=26.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..++|.||||+||||+++.++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4588999999999999999999998766543
No 162
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00023 Score=64.38 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=28.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.-|+|.|||||||||+++.++..+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45889999999999999999999998777654
No 163
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.14 E-value=0.00022 Score=63.20 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=22.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.-++|.|+||+||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999999999877
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.13 E-value=0.00025 Score=66.00 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=27.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
..|+|.|+|||||||+++.+|..+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999887765
No 165
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0013 Score=64.28 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=44.6
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEeccccc---------------------ChHHH-H---HH
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSAVQ---------------------SNSEL-R---FL 288 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~---------------------~~~~l-~---~~ 288 (449)
|++.. -++++||||+|||+|+..++..+ +..+..++...-. +..++ . ..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 48899999999999987766554 4556666643221 11122 1 11
Q ss_pred H--HcCCCCceEEeeccchhhh
Q 013128 289 L--LTMPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 289 ~--~~~~~~~Il~iDeiD~l~~ 308 (449)
+ .....+.+|+||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2 2335789999999999864
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.10 E-value=0.00016 Score=66.68 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=27.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+..|+|.||||+||||+++.+|..++..++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45689999999999999999999999765543
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00037 Score=63.15 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=26.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
+.-+.|.||+|+||||+++.++..+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999765543
No 168
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.0005 Score=60.97 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=29.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+.-+.|.|++|+||||+++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3458899999999999999999998 888887763
No 169
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.04 E-value=0.00038 Score=68.33 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=30.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
+..++|.||+|||||+++..+|..++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3578999999999999999999999998888864
No 170
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.04 E-value=0.00046 Score=61.50 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=27.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+.|.|+||+||||+++.+++.+ |++++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999998 89888775
No 171
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.03 E-value=0.00042 Score=64.16 Aligned_cols=30 Identities=20% Similarity=0.513 Sum_probs=26.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
++.++|.||||+||+|.|+.||..+++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 567889999999999999999999987654
No 172
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.02 E-value=0.00024 Score=70.48 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 214 DSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 214 ~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
.+.+.+.+.+.+...+...+ ...++|.||||+|||++++++|+.++++++.
T Consensus 4 ~~~L~~~il~~l~~~i~~g~---------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNY---------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCS---------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC---------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 35566667766665543221 2469999999999999999999999887743
No 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.02 E-value=0.00034 Score=65.68 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=28.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+.-++|.||||+||||+++.+++.++..+++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 456899999999999999999999998877653
No 174
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.02 E-value=0.00028 Score=64.61 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=26.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
++|.||||+||||+++.+|..+++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999888765
No 175
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.01 E-value=0.0005 Score=80.64 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=51.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccccC---------------------hHHHHHH---HHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAVQS---------------------NSELRFL---LLT 291 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~---------------------~~~l~~~---~~~ 291 (449)
|++.++.++|+||||||||+||.++|... +..++.++...... ...+..+ +.+
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 56777889999999999999999988763 67778877665322 1222222 222
Q ss_pred CCCCceEEeeccchhhh
Q 013128 292 MPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 292 ~~~~~Il~iDeiD~l~~ 308 (449)
...+.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 35789999999998865
No 176
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.95 E-value=0.00039 Score=64.28 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=26.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
++|.||||+||||+++.++..+++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999999876654
No 177
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.92 E-value=0.00055 Score=62.84 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=25.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
++|.||||+||+|.|+.||..+++..+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6889999999999999999999887654
No 178
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.90 E-value=0.00056 Score=61.49 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=25.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
-+.|.|+||+||||+++.+|+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.88 E-value=0.00042 Score=62.72 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=26.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
-+.|.||+||||||+++.+|+ +|+.+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 898887765
No 180
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.88 E-value=0.00063 Score=63.71 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=26.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
+.-+.|.||||+||||+++.||..++...++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999876543
No 181
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.86 E-value=0.00053 Score=64.91 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=29.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+..+.|.||+|+||||+++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 356999999999999999999999999888754
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.86 E-value=0.00066 Score=61.15 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~ 276 (449)
.-|.|.||||+||||+++.++..+ +++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 458899999999999999999999 588877653
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.86 E-value=0.0028 Score=57.56 Aligned_cols=109 Identities=11% Similarity=0.152 Sum_probs=67.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccc--cC-h---------------------------------HH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAV--QS-N---------------------------------SE 284 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~--~~-~---------------------------------~~ 284 (449)
..+++|+++|.||||+|-++|-.. |..+..+..-.- .. + ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358899999999999999999887 777777743221 00 0 01
Q ss_pred HHHHHHcC--CCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCCCcc
Q 013128 285 LRFLLLTM--PSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKLDPA 362 (449)
Q Consensus 285 l~~~~~~~--~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~ld~a 362 (449)
+....... ....+|+|||+-...... -.....++..+.. .++..-||+|+|.+ +++
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g---------------~l~~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~ 166 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD---------------YLPLEEVISALNA----RPGHQTVIITGRGC---HRD 166 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT---------------SSCHHHHHHHHHT----SCTTCEEEEECSSC---CHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC---------------CCCHHHHHHHHHh----CcCCCEEEEECCCC---cHH
Confidence 11222222 456899999997653210 1122346666653 24667889999885 566
Q ss_pred ccCCCccceEEEeC
Q 013128 363 LLRPGRMDMHLHMS 376 (449)
Q Consensus 363 LlrpgR~d~~i~l~ 376 (449)
|+. .-|.+-+|.
T Consensus 167 l~e--~AD~VTem~ 178 (196)
T 1g5t_A 167 ILD--LADTVSELR 178 (196)
T ss_dssp HHH--HCSEEEECC
T ss_pred HHH--hCcceeeec
Confidence 666 666666654
No 184
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.00082 Score=60.12 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+.|.||+||||||+++.+++.+ |++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6789999999999999999999 99887654
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00068 Score=62.24 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=27.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
.-+.|.||+||||||+++.++..+++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3588999999999999999999999877653
No 186
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.00042 Score=61.66 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=22.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
-|+|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 187
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.82 E-value=0.00099 Score=60.28 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=26.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+.-+.|.||+|+||||+++++|..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568899999999999999999998 55434444
No 188
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00076 Score=63.94 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=28.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH---cCCcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ---LKFDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~~ 276 (449)
.-|+|.|+||+||||+++.++.. .|+.++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 45889999999999999999998 6888775543
No 189
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.80 E-value=0.00065 Score=61.33 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=28.4
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.+.|.||+|+|||++++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999888764
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00057 Score=61.96 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.+.|.||+||||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 477999999999999999998 888887654
No 191
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.77 E-value=0.00091 Score=62.59 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=28.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+..+.|.||||+||||+++.+|..+++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999999887654
No 192
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.75 E-value=0.0011 Score=61.60 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=27.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
-.+++.|+||||||+++-++|..+ |+++..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999999999999887 777665544
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0033 Score=58.32 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=40.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc-------ccc-------------ChHHHHHHHHcC---CCCceE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS-------AVQ-------------SNSELRFLLLTM---PSRSML 298 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s-------~~~-------------~~~~l~~~~~~~---~~~~Il 298 (449)
-++++||||+|||+++..++..+ +..++.+... .+. ...++...+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 47788999999999998888777 5556655211 111 112343334332 347899
Q ss_pred Eeeccchh
Q 013128 299 VIEDIDCS 306 (449)
Q Consensus 299 ~iDeiD~l 306 (449)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 194
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.0011 Score=59.83 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=26.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC--cEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF--DIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l 274 (449)
.-|+|.||||+||||+++.++..++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 45889999999999999999999876 35443
No 195
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.74 E-value=0.00075 Score=61.22 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
-+.|.|++||||||+++.++..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4779999999999999999999999888765
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.64 E-value=0.0078 Score=56.09 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=26.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
.+++.||+|+|||.++.+++..++..++.+-.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999998766665543
No 197
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0009 Score=60.13 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=27.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..+.|.|++||||||+++.+|.. |+.+++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 88887665
No 198
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.63 E-value=0.0033 Score=67.47 Aligned_cols=60 Identities=28% Similarity=0.434 Sum_probs=40.0
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccc
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAV 279 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (449)
|..|-+-.+++++++.|...+. . +.-.|++||||||||+++..+...+ +..+..+..+..
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 3344344568888888876552 1 1247899999999998877666555 566666655543
No 199
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.61 E-value=0.0079 Score=61.70 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=56.4
Q ss_pred CceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCC-------------CCCCCc
Q 013128 295 RSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNH-------------KEKLDP 361 (449)
Q Consensus 295 ~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~-------------~~~ld~ 361 (449)
|.|++|||+|.+.. ...+.|+..|+.- ... ++|++||. ++.|+|
T Consensus 296 ~~VliIDEa~~l~~------------------~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~ 352 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI------------------ECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPL 352 (456)
T ss_dssp ECEEEEESGGGCBH------------------HHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCH
T ss_pred ceEEEEechhhcCH------------------HHHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCCh
Confidence 47999999998842 3567788888753 233 45544432 778999
Q ss_pred cccCCCccceEEEeCCCCHHHHHHHHHHHhCcCC
Q 013128 362 ALLRPGRMDMHLHMSYCNTSVFKQLAFNYLGISH 395 (449)
Q Consensus 362 aLlrpgR~d~~i~l~~p~~~~r~~l~~~~l~~~~ 395 (449)
.+++ ||.. +.+++++.++..++++..+..++
T Consensus 353 ~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~ 383 (456)
T 2c9o_A 353 DLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEG 383 (456)
T ss_dssp HHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHT
T ss_pred hHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhC
Confidence 9999 9976 69999999999999987765433
No 200
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.60 E-value=0.0054 Score=62.96 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=29.1
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEe
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLD 275 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~ 275 (449)
|++.+.-++|.||||+|||+++..+|..+ |.++..++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56656669999999999999999988765 44666655
No 201
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.58 E-value=0.0013 Score=60.18 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
..+.|.|++|||||++++.++..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46889999999999999999999998887754
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.58 E-value=0.0013 Score=59.67 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=24.2
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.++-++|.||||+||||+++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356789999999999999999999985
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.0005 Score=62.37 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
+.-|.|.|+|||||||+++.++..++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3458899999999999999999988544
No 204
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.56 E-value=0.00099 Score=65.64 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=31.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
.-++|.||+|||||+|+..||..++..+++.|--.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 468899999999999999999999998888776544
No 205
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0014 Score=58.23 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
++-+.|.||+|+|||||++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999874
No 206
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.53 E-value=0.021 Score=59.97 Aligned_cols=73 Identities=4% Similarity=0.118 Sum_probs=48.5
Q ss_pred ceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCC--CCCccccCCCccceEE
Q 013128 296 SMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKE--KLDPALLRPGRMDMHL 373 (449)
Q Consensus 296 ~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~--~ld~aLlrpgR~d~~i 373 (449)
.+|+|||+..+..... ......+..+... | ..-++-+|++|.+|. .|+..+.. -|...|
T Consensus 345 ivvVIDE~~~L~~~~~-----------~~~~~~L~~Iar~--G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI 405 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----------KKVEELIARIAQK--A----RAAGIHLILATQRPSVDVITGLIKA--NIPTRI 405 (574)
T ss_dssp EEEEESCCTTHHHHTC-----------HHHHHHHHHHHHH--C----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEE
T ss_pred EEEEEeCHHHHhhhhh-----------HHHHHHHHHHHHH--H----hhCCeEEEEEecCcccccccHHHHh--hhccEE
Confidence 5899999998864211 1111222223221 1 135688999999987 78877766 677888
Q ss_pred EeCCCCHHHHHHHH
Q 013128 374 HMSYCNTSVFKQLA 387 (449)
Q Consensus 374 ~l~~p~~~~r~~l~ 387 (449)
.+...+..+-+.++
T Consensus 406 ~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 406 AFQVSSKIDSRTIL 419 (574)
T ss_dssp EECCSCHHHHHHHH
T ss_pred EEEcCCHHHHHHhc
Confidence 89988888877776
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.53 E-value=0.0019 Score=60.88 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=26.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
..+.|.||+|+||||+++.+|..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999987765
No 208
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.52 E-value=0.0013 Score=60.23 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=27.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.-+.|.|++|+||||+++.++. +|+++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4588999999999999999998 888877654
No 209
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.46 E-value=0.0018 Score=62.96 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=29.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
+.-++|.||+|+|||+|+..+|..++..++..|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999988777654
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0019 Score=59.67 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=28.2
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|++.+.-++|+||||+|||+++..+|..+ +..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45556679999999999999988887654 455555543
No 211
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=60.42 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
+..+.|.|++|+|||++++.+|..+|+++++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 345889999999999999999999998877643
No 212
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.44 E-value=0.0011 Score=63.84 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=25.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc-CCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL-KFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l 274 (449)
.-|+|.||||+||||+++.++..+ ++.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6655543
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.44 E-value=0.0028 Score=56.40 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=26.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~ 275 (449)
+.-++|.|+||+||||+++.+|..++ ..+..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 34588999999999999999999884 4454444
No 214
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.44 E-value=0.0019 Score=57.61 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=22.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
-+.|.||+|+||||+++.++..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999987654
No 215
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.43 E-value=0.0014 Score=59.68 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=27.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
.++++|.||+|+|||+|+.+++...+ .++..|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46899999999999999999999877 6665543
No 216
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.41 E-value=0.0012 Score=59.96 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc-CCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL-KFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~ 275 (449)
.-+.|.||||+||||+++.++..+ +..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347899999999999999999988 55555443
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.40 E-value=0.0018 Score=60.92 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=24.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
.-|.|.||||+||||+++.++..++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 458899999999999999999999976
No 218
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.39 E-value=0.00081 Score=61.03 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999874
No 219
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.39 E-value=0.023 Score=58.08 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=62.2
Q ss_pred HcCCCCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCcccc------CCCCeEEEEEc----CCCCCC
Q 013128 290 LTMPSRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSC------CGEGRIIVFTT----NHKEKL 359 (449)
Q Consensus 290 ~~~~~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------~~~~~iiI~tT----N~~~~l 359 (449)
..+...+|+++||||.+....+... .+....-+...||..+||.... ..+++++|+|. +.+..+
T Consensus 246 ~~ae~~~il~~DEidki~~~~~~~~------~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dl 319 (444)
T 1g41_A 246 DAVEQNGIVFIDEIDKICKKGEYSG------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDL 319 (444)
T ss_dssp HHHHHHCEEEEETGGGGSCCSSCSS------SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGS
T ss_pred HHhccCCeeeHHHHHHHhhccCCCC------CCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhc
Confidence 3334677999999999975322111 1112233556799999985322 23567888887 234345
Q ss_pred CccccCCCccceEEEeCCCCHHHHHHHHH
Q 013128 360 DPALLRPGRMDMHLHMSYCNTSVFKQLAF 388 (449)
Q Consensus 360 d~aLlrpgR~d~~i~l~~p~~~~r~~l~~ 388 (449)
-|.|+. ||+.+|.++.++.+++..|+.
T Consensus 320 ipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 320 IPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred chHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 578887 999999999999999999984
No 220
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.38 E-value=0.013 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++.+.-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.36 E-value=0.0017 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999987
No 222
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.33 E-value=0.002 Score=63.63 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=28.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.-++|.||+|+|||+++..+|..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999997766655
No 223
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.32 E-value=0.0066 Score=54.89 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=28.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSAV 279 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 279 (449)
.-+.|.||+|+||||+++.++..+ +.+++.++....
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 458899999999999999999986 666666654433
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0032 Score=58.20 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=28.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHH----cCCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQ----LKFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~----l~~~~~~l~~ 276 (449)
|++.+.-++++|+||+|||+++..+|.. .+..++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4555667999999999999999887643 2566666553
No 225
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.29 E-value=0.0021 Score=58.64 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 455889999999999999999998854
No 226
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.26 E-value=0.0041 Score=56.57 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999885
No 227
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.26 E-value=0.036 Score=50.33 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=34.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhc---CCCCcceEEeCCCCCCHHHH-HHHHHHHc
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIG---RAWKRGYLLYGPPGTGKSSL-IAAMANQL 267 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g---~~~~rg~LL~GPpGtGKT~l-a~aiA~~l 267 (449)
.+|+++...+.+.+.+.+. -+..+..|+... ....+.+++.+|+|+|||.. +-.+...+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 5699988887777666432 111222222211 11135799999999999987 34444443
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.24 E-value=0.003 Score=57.53 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=27.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC----CcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK----FDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~ 275 (449)
+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45588999999999999999999875 4566665
No 229
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.24 E-value=0.0076 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.22 E-value=0.0015 Score=66.46 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+.-++|.||||+||||+++.++..+++.+++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 45588999999999999999999998765543
No 231
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.21 E-value=0.0085 Score=61.15 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcChh-HHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 217 LKREITEDLENFMNGKE-YYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 217 ~k~~i~~~l~~~~~~~~-~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+.+.+.+.+...+.... .+. .....++.+++.||||+||||++..+|..+ |..+..+++
T Consensus 73 ~~~~~~~~l~~ll~~~~~~~~-~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 73 IIKIVYEELVKLLGEEAKKLE-LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp HHHHHHHHHHHHHCCSCCCCC-CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred HHHHHHHHHHHHhCCCCcCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 44555555655554321 010 011224568999999999999999999987 355555554
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.20 E-value=0.011 Score=57.09 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHcChhHHhhhc-CCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEecc
Q 013128 216 ELKREITEDLENFMNGKEYYTRIG-RAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLS 277 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s 277 (449)
.+++.+.+.+...+..... .. ...+..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 80 ~~~~~~~~~l~~~l~~~~~---~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADK---WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp THHHHHHHHHHTTSCCGGG---SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCccc---ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4455555555555432221 11 1234568899999999999999999876 4466655543
No 233
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.20 E-value=0.021 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=18.6
Q ss_pred CcceEEeCCCCCCHHHH-HHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSL-IAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~l-a~aiA~~l 267 (449)
.+.+++.+|+|+|||.. +..+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 35799999999999986 44444543
No 234
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.18 E-value=0.035 Score=57.70 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCC--CCCccccCCCccceEEEeCCCCHHHHHHHHH
Q 013128 346 GRIIVFTTNHKE--KLDPALLRPGRMDMHLHMSYCNTSVFKQLAF 388 (449)
Q Consensus 346 ~~iiI~tTN~~~--~ld~aLlrpgR~d~~i~l~~p~~~~r~~l~~ 388 (449)
++-+|++|.++. .++..+.. -+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 577888999886 57777766 677888888888888887765
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.18 E-value=0.0034 Score=56.61 Aligned_cols=27 Identities=33% Similarity=0.563 Sum_probs=23.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
|.++|.||+|+|||||++.+.....-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 568999999999999999999887533
No 236
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.18 E-value=0.0022 Score=61.60 Aligned_cols=31 Identities=35% Similarity=0.335 Sum_probs=26.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.-|.|.|+|||||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 358899999999999999999 6888776653
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.17 E-value=0.0031 Score=56.70 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|+||||+++.++..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999864
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0047 Score=59.95 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcChhHHhhhc--CCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 215 SELKREITEDLENFMNGKEYYTRIG--RAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 215 ~~~k~~i~~~l~~~~~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566667777776665432001122 2334458899999999999999999987
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.15 E-value=0.0028 Score=61.81 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=28.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
.-++|.||+|+|||+|+..+|..++..++..|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 457899999999999999999999877766553
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.14 E-value=0.0064 Score=61.99 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHcChh-HHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 215 SELKREITEDLENFMNGKE-YYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 215 ~~~k~~i~~~l~~~~~~~~-~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+.+++.+.+.+...+.... .... ....++-+++.||+|+||||++..+|..+ +..+..++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~-~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVN-PTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCS-CCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCcccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4455666666666665321 1111 11234568899999999999999999887 55555544
No 241
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.11 E-value=0.003 Score=57.54 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=27.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
..|.|.||+|||||++++.+|..+|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 458899999999999999999999999986
No 242
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.10 E-value=0.073 Score=48.15 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCC---CCcceEEeCCCCCCHHHHHHHHHHH
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRA---WKRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
+..+|+++...+++.+.+.+. -+..+..|+...++ ..+.+++.+|+|+|||..+...+-.
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 445788888887777666441 11112222221111 1356999999999999866554433
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.08 E-value=0.0032 Score=56.17 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=22.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999874
No 244
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.03 E-value=0.0078 Score=61.47 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 215 SELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 215 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
+.+++.+.+.+...+..+...... ...+.-+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455666777777666542111111 1135668999999999999999999887 5666655543
No 245
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.03 E-value=0.061 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l 267 (449)
+++.|++|+|||+|+.++.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 246
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.0094 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 247
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.98 E-value=0.042 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
--++|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999988765
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.98 E-value=0.0036 Score=56.63 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
++-+.|.||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999999764
No 249
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.98 E-value=0.018 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 250
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.97 E-value=0.01 Score=53.68 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.2
Q ss_pred cceEEeCCCCCCHH-HHHHHHHHHc--CCcEEEEe
Q 013128 244 RGYLLYGPPGTGKS-SLIAAMANQL--KFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT-~la~aiA~~l--~~~~~~l~ 275 (449)
.-+++|||.|+||| .|++++.++. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 35889999999999 9999998876 56666664
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.96 E-value=0.0089 Score=58.15 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 217 LKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 217 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+++.+.+.+...+...... .+....+.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5666666666666543200 1112334568899999999999999999887 445554443
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.95 E-value=0.0049 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
++-+.|.||+|+|||+|+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45588999999999999999999875
No 253
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0064 Score=60.48 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHcChhHHhhhc--CCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 215 SELKREITEDLENFMNGKEYYTRIG--RAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 215 ~~~k~~i~~~l~~~~~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4556666666666665432111222 2334558899999999999999999987
No 254
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.93 E-value=0.017 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 255
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.89 E-value=0.025 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.|++|+|||+|+.++.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998753
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.88 E-value=0.0057 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||.|+|||||+++|+..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458899999999999999999988
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.86 E-value=0.0033 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|+||||+++.++..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999987
No 258
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.86 E-value=0.0048 Score=59.97 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=27.0
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
.++.+..+.|.||+|+|||||++.|+..+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 455566799999999999999999999984333
No 259
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.84 E-value=0.23 Score=44.17 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.6
Q ss_pred CcceEEeCCCCCCHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIA 261 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~ 261 (449)
.+.+++.+|+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999996543
No 260
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.84 E-value=0.019 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-+++.|++|+|||+|+.++.+.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.84 E-value=0.0051 Score=56.57 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||+|+|||||++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4458899999999999999999987
No 262
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.82 E-value=0.018 Score=64.07 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHc-----CC----cEEE----------Eecccc-c--------ChHHHHHHHHcCC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQL-----KF----DIYD----------LDLSAV-Q--------SNSELRFLLLTMP 293 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l-----~~----~~~~----------l~~s~~-~--------~~~~l~~~~~~~~ 293 (449)
.+..++|.||.|+||||+.+.+|.-. +. .-.. +...+. . ...++..++....
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 34568999999999999999987432 21 1111 111110 0 0123334455578
Q ss_pred CCceEEeeccchhhhcccccchhhhhccchhhHHHHHHHHHHhcCccccCCCCeEEEEEcCCCCCC
Q 013128 294 SRSMLVIEDIDCSVKLQNRESSEVQATNQEENKVTLSGLLNFIDGLWSCCGEGRIIVFTTNHKEKL 359 (449)
Q Consensus 294 ~~~Il~iDeiD~l~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iiI~tTN~~~~l 359 (449)
.|++|++||.-.-.. ..........++..+-. ..+..+|++|.+.+..
T Consensus 752 ~p~LlLLDEP~~GlD-------------~~~~~~i~~~il~~L~~-----~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 752 SQSLVILDELGRGTS-------------THDGIAIAYATLEYFIR-----DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp TTCEEEEESTTTTSC-------------HHHHHHHHHHHHHHHHH-----TTCCEEEEECSCGGGG
T ss_pred CCCEEEEeCCCCCCC-------------HHHHHHHHHHHHHHHHH-----hcCCeEEEEeCcHHHH
Confidence 999999999865331 11122233355555421 1235778888876543
No 263
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.82 E-value=0.029 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.|++|+|||+|+.++++.-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 459999999999999999998753
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.82 E-value=0.0053 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||+|+|||||+++|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999885
No 265
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.80 E-value=0.015 Score=51.35 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999999754
No 266
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.80 E-value=0.012 Score=50.35 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~ 265 (449)
-++|.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 488999999999999999864
No 267
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.79 E-value=0.007 Score=62.60 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+..+.|.||+|+||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3458899999999999999999987
No 268
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.79 E-value=0.014 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 269
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.77 E-value=0.025 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
-.++|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999974
No 270
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.75 E-value=0.025 Score=63.11 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
+.-++|.||.|+||||+++.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999853
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.75 E-value=0.0047 Score=59.31 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
|++.+.-++|.||||+|||+|+..+|..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555669999999999999999999876
No 272
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.75 E-value=0.07 Score=51.75 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=33.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCC----CCcceEEeCCCCCCHHHHHHHHHHH
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGRA----WKRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.+|+++...+.+.+.+.+. -+..+..++...++ ..+.+++.+|+|+|||..+...+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4577777777666655431 11112222221111 1357999999999999886554443
No 273
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.74 E-value=0.035 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..++|.|++|+|||+|+.++.+.-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
No 274
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.73 E-value=0.0049 Score=62.09 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=27.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 275 (449)
.-++|.||+|+|||+|+..+|..++..++..|
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999999988776654
No 275
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.73 E-value=0.023 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 276
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.70 E-value=0.043 Score=47.30 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+++.|++|+|||+|+.++.+.-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 277
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.70 E-value=0.02 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998754
No 278
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.69 E-value=0.023 Score=48.40 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 279
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.69 E-value=0.014 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.++|.|++|+|||+|+.++.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998743
No 280
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.69 E-value=0.021 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
--+++.|+||+|||+|+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999754
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.68 E-value=0.013 Score=57.27 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcChhHH---hhhc--CCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEecc
Q 013128 217 LKREITEDLENFMNGKEYY---TRIG--RAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLS 277 (449)
Q Consensus 217 ~k~~i~~~l~~~~~~~~~~---~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 277 (449)
+++.+.+.+...+.....- ..+. ...+..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5555666666665433200 1121 2334568899999999999999999887 5566665544
No 282
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.68 E-value=0.0056 Score=57.01 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=25.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+-|.||||+||||+++.+|..+++..+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 56889999999999999999999887654
No 283
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.66 E-value=0.0082 Score=63.95 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=29.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+.-|+|.|+||+||||++++++..+ |.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3458899999999999999999999 99999886
No 284
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.65 E-value=0.033 Score=61.01 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999987777554
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.64 E-value=0.0068 Score=55.98 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=23.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||+|+|||||+++|+..+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455889999999999999999998863
No 286
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.031 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.++|.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.62 E-value=0.0076 Score=57.19 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-++|.||+|+||||++++++..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 3458899999999999999999986
No 288
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.57 E-value=0.011 Score=57.57 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|.+++.-++|.|+||+|||+++..+|... +.++..+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 55556669999999999999999998765 345655543
No 289
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.55 E-value=0.01 Score=63.49 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=24.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 276 (449)
...++.||||||||+++..++..+ +..+..+..
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 357899999999999988887765 334544433
No 290
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.54 E-value=0.019 Score=58.28 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=34.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.+++++....+.+..+ +.+ +..+ ...++|.||+|+||||+++++++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L-~~l---~~~~----------ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-RRL---IKRP----------HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-HHH---HTSS----------SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHH-HHH---HHhc----------CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34677887766554433 222 2211 23478999999999999999999985
No 291
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.50 E-value=0.043 Score=50.40 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=31.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcC---CCCcceEEeCCCCCCHHHHH
Q 013128 204 HPMTFKTLALDSELKREITEDLENFMNGKEYYTRIGR---AWKRGYLLYGPPGTGKSSLI 260 (449)
Q Consensus 204 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la 260 (449)
...+|+++...+.+.+.+.+. -+..+..++...+ ...+.+++.+|+|+|||...
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEA---QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHT---TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 345688888777776665431 1111222222111 11467999999999999854
No 292
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.49 E-value=0.0072 Score=56.11 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=25.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC--CcEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK--FDIYD 273 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~ 273 (449)
.-+.|.||||+||||+++.+++.++ .+++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3478899999999999999999996 45543
No 293
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.47 E-value=0.018 Score=56.43 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHcChh---HHh-hhcCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 216 ELKREITEDLENFMNGKE---YYT-RIGRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~---~~~-~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.+.+.+...+.... ... ....+.+.-+.|.||+|+||||+++.||..+
T Consensus 98 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 98 IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555655554321 000 0122334568899999999999999999987
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.47 E-value=0.0055 Score=53.96 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.5
Q ss_pred CcceEEeCCCCCCHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAA 262 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~a 262 (449)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44588999999999999994
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.42 E-value=0.0091 Score=57.58 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||+|+||||+++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999998863
No 296
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.42 E-value=0.0029 Score=57.29 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
-+.|.||+|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999853
No 297
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.04 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-.+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 298
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.019 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999765
No 299
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.39 E-value=0.0086 Score=53.58 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcCCcEEEEecccc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLKFDIYDLDLSAV 279 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 279 (449)
+|++|++|+|||++|..+|.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888876543
No 300
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.38 E-value=0.0075 Score=55.90 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=27.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
.-|.+.|++|||||++++.+|..+|+++++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999999876
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.017 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 302
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.31 E-value=0.024 Score=56.79 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=42.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEecccc-------------------cCh---HH---------HH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSAV-------------------QSN---SE---------LR 286 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~-------------------~~~---~~---------l~ 286 (449)
+.-++|.||+|||||+|++.||+.. +..++.+-+.+- .+. .+ ..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3459999999999999999999875 333433322210 011 11 11
Q ss_pred HHHHcCCCCceEEeeccchhhh
Q 013128 287 FLLLTMPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 287 ~~~~~~~~~~Il~iDeiD~l~~ 308 (449)
.-|....+..+|++|++.+++.
T Consensus 254 Eyfrd~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITRLAR 275 (422)
T ss_dssp HHHHHTSCEEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEEeCchHHHH
Confidence 2344566789999999998764
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.30 E-value=0.0088 Score=53.91 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=21.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-+.|.||+|+||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.30 E-value=0.036 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999986
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.29 E-value=0.011 Score=59.13 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=23.7
Q ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 241 AWKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
..+..++|.||+|+||||+++++++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3345589999999999999999999873
No 306
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.29 E-value=0.072 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++.+.-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 307
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.27 E-value=0.045 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.26 E-value=0.0093 Score=59.27 Aligned_cols=23 Identities=48% Similarity=0.699 Sum_probs=21.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.||+|+||||+++++++.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58899999999999999999987
No 309
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.24 E-value=0.028 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.++|.|++|+|||+|+.++.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
No 310
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.21 E-value=0.043 Score=60.21 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
+..++|.||.|+||||+.+.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999875
No 311
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.18 E-value=0.021 Score=59.27 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHcChhHHhhhcC--CCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 216 ELKREITEDLENFMNGKEYYTRIGR--AWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~~g~--~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
.+.+.+.+.+...+..... .+.. ..++.+++.|+||+||||++..+|..+ |..+..+++
T Consensus 74 ~~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3555666666666653210 1111 224568899999999999999999877 566665554
No 312
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.13 E-value=0.031 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.++|.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998653
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.12 E-value=0.012 Score=54.90 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
-+-|.||.|+||||+++.++..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47789999999999999999988754
No 314
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.12 E-value=0.026 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+++.|++|+|||+|+.++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 315
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.09 E-value=0.03 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 359999999999999999999754
No 316
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.07 E-value=0.026 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
-+-|.||+||||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 477899999999999999999875
No 317
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.07 E-value=0.041 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-++|.|++|+|||+|+..+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999864
No 318
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.07 E-value=0.017 Score=63.45 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=20.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999988887765
No 319
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.07 E-value=0.01 Score=52.76 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=24.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.+|+||.||+|+|||+++.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999999885 54444
No 320
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.07 E-value=0.063 Score=47.59 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
.--+++.|++|+|||+|+.++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999864
No 321
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.06 E-value=0.051 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..++|.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.05 E-value=0.0066 Score=56.00 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=15.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHH-HHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMA-NQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA-~~l~ 268 (449)
+.-+.|.||+|+||||+++.++ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3458899999999999999999 8763
No 323
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.02 E-value=0.014 Score=61.10 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=26.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
+.-|+|.|+||+|||++++.+|.++ +.+...++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 3468999999999999999999998 44444443
No 324
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.02 E-value=0.0051 Score=59.34 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=26.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEeccccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLDLSAVQ 280 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~ 280 (449)
.-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3478999999999999999999876 445666666665
No 325
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.02 E-value=0.014 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..-+.|.||+|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999999875
No 326
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.022 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=22.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
...+++.|++|+|||+|+.++++.-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998754
No 327
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.025 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+++.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 328
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.00 E-value=0.14 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-+++.|++|+|||+|+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999865
No 329
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.99 E-value=0.054 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
.++|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 330
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.98 E-value=0.079 Score=48.25 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=29.3
Q ss_pred CCCccc-ccCCHHHHHHHHHHHHHHHcChhHHhhhcC---CCCcceEEeCCCCCCHHHHH
Q 013128 205 PMTFKT-LALDSELKREITEDLENFMNGKEYYTRIGR---AWKRGYLLYGPPGTGKSSLI 260 (449)
Q Consensus 205 p~~f~~-l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la 260 (449)
..+|++ +...+++.+.+.+. -+..+..++...+ ..++.+++.+|+|+|||...
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRV---GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred hhhHhhhhccCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 346777 45566655554331 1112222222111 12457999999999999754
No 331
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.98 E-value=0.3 Score=47.72 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhh-----hcCCCCcceEEeCCCCCCHHHHHHH
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTR-----IGRAWKRGYLLYGPPGTGKSSLIAA 262 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~-----~g~~~~rg~LL~GPpGtGKT~la~a 262 (449)
.+|+++...+.+.+.+.+. -+..+..++. +-...++.+++.+|+|+|||..+..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM---KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHH
Confidence 4677777777766665431 1111111221 1111237899999999999986543
No 332
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.93 E-value=0.02 Score=58.49 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=29.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 276 (449)
|.+++.-++|.|+||+|||+++..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56656669999999999999999988764 456666654
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.88 E-value=0.016 Score=56.22 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4458899999999999999999987
No 334
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.87 E-value=0.029 Score=57.17 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEeccc
Q 013128 217 LKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSA 278 (449)
Q Consensus 217 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~ 278 (449)
+.+.+.+.+...+.....--......++.+++.|++|+||||++..+|..+ |..+.-+++..
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 445555555555543210000111235678899999999999999999776 66777666653
No 335
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.87 E-value=0.026 Score=49.88 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=25.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
..+.+.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 457899999999999999999886 45555444
No 336
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=94.86 E-value=0.022 Score=43.37 Aligned_cols=66 Identities=11% Similarity=-0.034 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHH
Q 013128 376 SYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELMK-------STNAEVSLNGLVKFLHAKM 441 (449)
Q Consensus 376 ~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~~~~~~al~~l~~~l~~~~ 441 (449)
|.|+.++|++||+.++......-.-++..+++.+ ++|+|||..++.. ........+.+.+++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999865432223466666654 5999999887742 2222334455555555443
No 337
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.83 E-value=0.0089 Score=62.32 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=26.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC--cEEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF--DIYDL 274 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l 274 (449)
+.++++.||+|+||||+++++++.+.. .++.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 456999999999999999999999843 34444
No 338
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.82 E-value=0.35 Score=44.42 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=30.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcC---CCCcceEEeCCCCCCHHHHH
Q 013128 205 PMTFKTLALDSELKREITEDLENFMNGKEYYTRIGR---AWKRGYLLYGPPGTGKSSLI 260 (449)
Q Consensus 205 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la 260 (449)
..+|+++...+.+.+.+.+. -+..+..++...+ ..++.+++.+|+|+|||...
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 35788887777666555431 1111211221110 11357999999999999864
No 339
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.74 E-value=0.033 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..++|.|++|+|||+|+.++.+.-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999999998643
No 340
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.092 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999985
No 341
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.71 E-value=0.046 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-++|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3899999999999999998754
No 342
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.71 E-value=0.1 Score=60.55 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 241 AWKRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+++.-+.|.||+|+|||||+++|.+++..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 33445889999999999999999998853
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.71 E-value=0.017 Score=56.20 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 33477999999999999999999874
No 344
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.018 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999994
No 345
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.67 E-value=0.026 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-++|.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998743
No 346
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.64 E-value=0.053 Score=55.04 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHcChhHHhhhcCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 216 ELKREITEDLENFMNGKEYYTRIGRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
.+++.+.+.+...+.... ..+....+..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 345555555655554321 12222234568888999999999999999987 455555554
No 347
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.63 E-value=0.017 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.204 Sum_probs=22.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
-.+|+||.|+|||+++.||+-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4679999999999999999998763
No 348
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.62 E-value=0.027 Score=51.67 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=25.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC---CcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK---FDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l 274 (449)
.-|.|.||+|+||||+++.++..++ ++++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3477889999999999999999884 555544
No 349
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.62 E-value=0.022 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=9.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998754
No 350
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.61 E-value=0.41 Score=44.76 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred cceEEeCCCCCCHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIA 261 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~ 261 (449)
+.+++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 579999999999998643
No 351
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.61 E-value=0.023 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
--+++.|++|+|||+|+.++.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998654
No 352
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.023 Score=62.51 Aligned_cols=35 Identities=37% Similarity=0.408 Sum_probs=25.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEeccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDLSA 278 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~ 278 (449)
..+|+.||||||||+++..++..+ +..+..+..+.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 357899999999999987776554 44555554443
No 353
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.59 E-value=0.04 Score=53.20 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHcChhHHhh-hcCCC-CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEeccc
Q 013128 216 ELKREITEDLENFMNGKEYYTR-IGRAW-KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDLSA 278 (449)
Q Consensus 216 ~~k~~i~~~l~~~~~~~~~~~~-~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 278 (449)
.+++.+.+.+...+.... .. +.... +.-+++.||+|+|||+++..+|..+ +..+..+++.-
T Consensus 71 ~~~~~~~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 71 WFIKIVYDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345556666665554321 11 11111 4457888999999999999999887 56666666543
No 354
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.59 E-value=0.019 Score=60.62 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=28.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC----CcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK----FDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~ 276 (449)
..|+|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3478999999999999999999986 77777773
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.58 E-value=0.016 Score=56.10 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=27.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC-----CcEEEEecccc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK-----FDIYDLDLSAV 279 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~~s~~ 279 (449)
.-+-|.||+|+||||+++.|+..++ -.+..+++...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3477999999999999999999876 12444554443
No 356
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.57 E-value=0.0085 Score=56.51 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=24.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc-CCcEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL-KFDIY 272 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~ 272 (449)
.-|.|.|++|+||||+++.++..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 347889999999999999999999 44433
No 357
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.54 E-value=0.018 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-+.|.||+|+|||+|++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999999863
No 358
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.54 E-value=0.025 Score=60.28 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+-+++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999998887665
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.54 E-value=0.02 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++++.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 360
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.54 E-value=0.028 Score=55.39 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=29.1
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|..++.-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44445569999999999999999998875 566655543
No 361
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.53 E-value=0.15 Score=55.08 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.2
Q ss_pred CcceEEeCCCCCCHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLI 260 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la 260 (449)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 567999999999999887
No 362
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.52 E-value=0.014 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998654
No 363
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.51 E-value=0.015 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||.|+|||||+++|+..+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345889999999999999999998754
No 364
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.036 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999874
No 365
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.49 E-value=0.038 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999988765
No 366
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.43 E-value=0.025 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-|.|.||+|+||||+++.+++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999998
No 367
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.41 E-value=0.041 Score=57.18 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=23.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
..|.|.|++||||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999985
No 368
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.40 E-value=0.018 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.40 E-value=0.015 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||.|+|||||+++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999999987
No 370
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.38 E-value=0.065 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
--++|.|++|+|||+|++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 359999999999999999887754
No 371
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.36 E-value=0.018 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999986
No 372
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.03 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..++|.|++|+|||+|+.++.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
No 373
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.35 E-value=0.04 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.|++|+|||+|+.++.+.-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 374
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.33 E-value=0.022 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+++.|++|+|||+|+.++.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.026 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=22.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999865
No 376
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.31 E-value=0.13 Score=57.93 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMA 264 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA 264 (449)
+..++|.||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999984
No 377
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.30 E-value=0.025 Score=51.86 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=27.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEEEec
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYDLDL 276 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 276 (449)
.+-|.|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 477999999999999999998 9999998774
No 378
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.27 E-value=0.013 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||.|+|||||+++|+..+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999988754
No 379
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.26 E-value=0.034 Score=56.89 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.9
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
|..++.-++|.|+||+|||+++..+|... |.++..+++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 55555569999999999999999988776 566666654
No 380
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.24 E-value=0.029 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
.+++.|++|+|||+|+.++.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
No 381
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.23 E-value=0.018 Score=54.51 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||.|+|||||+++|+..+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344789999999999999999998854
No 382
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.23 E-value=0.079 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+..++|.||.|+||||+.+.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568899999999999999998753
No 383
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.22 E-value=0.26 Score=47.02 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=23.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEEEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIYDL 274 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 274 (449)
+.+++.+|+|+|||..+...+-..+...+.+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv 62 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVV 62 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEE
Confidence 5799999999999987766665555544443
No 384
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.21 E-value=0.022 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.-+.|.||.|+|||||+++|+..+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56789999999999999999998743
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.18 E-value=0.017 Score=53.01 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||.|+|||||+++|+..+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998743
No 386
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.17 E-value=0.023 Score=56.41 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFD 270 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 270 (449)
..-+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999998654
No 387
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.15 E-value=0.014 Score=60.19 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-|+|.|.||+|||++++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999999875
No 388
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.15 E-value=0.019 Score=53.76 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999999873
No 389
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.13 E-value=0.018 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34588999999999999999999874
No 390
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.11 E-value=0.026 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+.|.|+||+|||+|++++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999863
No 391
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.07 E-value=0.028 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+++.|++|+|||+|+.++.+.-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 392
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.05 E-value=0.035 Score=51.06 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDI 271 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 271 (449)
.-+.|.||+|+||||+++.+++.++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 4578899999999999999999998743
No 393
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.04 E-value=0.021 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||.|+|||||+++|+..+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 345889999999999999999998754
No 394
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.02 E-value=0.029 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.|++|+|||+|+.++.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998754
No 395
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.02 E-value=0.019 Score=54.25 Aligned_cols=25 Identities=44% Similarity=0.686 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||.|+|||||+++|+..+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4488999999999999999999874
No 396
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.01 E-value=0.096 Score=50.39 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
+..+.+.||+|+||||++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4457788999999999999999887 455655554
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.98 E-value=0.046 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
...+++.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35688999999999999999999864
No 398
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.98 E-value=0.022 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 399
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.97 E-value=0.025 Score=53.71 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||.|+|||||++.|+..+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999963
No 400
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.96 E-value=0.032 Score=57.81 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=29.5
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc----CCcEEEEec
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL----KFDIYDLDL 276 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 276 (449)
|.+.+.-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45555569999999999999999998776 445666654
No 401
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.93 E-value=0.026 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
-.+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 402
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.93 E-value=0.024 Score=54.00 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.+.|.||+|+|||||+++|++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998743
No 403
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.91 E-value=0.022 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 44588999999999999999998763
No 404
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.90 E-value=0.02 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 405
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.90 E-value=0.024 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=19.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 406
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.89 E-value=0.08 Score=52.23 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-+.|.|+||+|||||+.+++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999865
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.85 E-value=0.018 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=23.5
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+..++|.||+|+|||||+++|+..+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45699999999999999999999885
No 408
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.85 E-value=0.024 Score=53.26 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
+.-+.|.||.|+|||||+++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999996
No 409
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.82 E-value=0.025 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.8
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 410
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.82 E-value=0.022 Score=54.46 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||.|+|||||+++|+..+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3488999999999999999999874
No 411
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.81 E-value=0.022 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.-+.|.||.|+|||||++.|+..+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44889999999999999999998754
No 412
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.79 E-value=0.024 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||+++||....
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3478999999999999999999874
No 413
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.79 E-value=0.048 Score=53.88 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=25.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 275 (449)
.-+.|.|+||+||||++.+++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 458899999999999999999886 55544443
No 414
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.77 E-value=0.029 Score=55.76 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||.++||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3478999999999999999999874
No 415
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.77 E-value=0.02 Score=53.88 Aligned_cols=27 Identities=41% Similarity=0.471 Sum_probs=23.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
+.-+.|.||.|+|||||++.|+..+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345889999999999999999998754
No 416
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.75 E-value=0.029 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-+.|.|++|+|||+|+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999974
No 417
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.74 E-value=0.035 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 418
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.74 E-value=0.033 Score=47.66 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~ 265 (449)
-+++.|+||+|||+|+.++++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999964
No 419
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.69 E-value=0.03 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||.++||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4478999999999999999999874
No 420
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.67 E-value=0.034 Score=47.88 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+|+||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998755
No 421
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.65 E-value=0.031 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||.++||....
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4478999999999999999999874
No 422
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.65 E-value=0.024 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||.|+|||||++.|+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3488999999999999999999874
No 423
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.64 E-value=0.027 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.6
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998874
No 424
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.64 E-value=0.032 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||+++||....
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3478999999999999999999884
No 425
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.63 E-value=0.028 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||+++||....
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4478999999999999999999874
No 426
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.62 E-value=0.025 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999999874
No 427
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.60 E-value=0.032 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+++.|++|+|||+|+.++++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 428
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.58 E-value=0.034 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-|.|.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999988
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.54 E-value=0.029 Score=58.56 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.7
Q ss_pred cCCCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 239 GRAWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 239 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
|++....++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555669999999999999999999876
No 430
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.53 E-value=0.025 Score=55.51 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=39.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCC--cEEEEecc-cc-----------c--ChHHHHHHHH--cCCCCceEEeeccc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKF--DIYDLDLS-AV-----------Q--SNSELRFLLL--TMPSRSMLVIEDID 304 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s-~~-----------~--~~~~l~~~~~--~~~~~~Il~iDeiD 304 (449)
+..++|.||+|+|||||+++|+..+.. ..+.++-. .+ . .....+..+. -...|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 357999999999999999999999843 23333311 10 0 1112222222 23578999999975
Q ss_pred h
Q 013128 305 C 305 (449)
Q Consensus 305 ~ 305 (449)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 431
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.51 E-value=0.041 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..-+++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999863
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.48 E-value=0.021 Score=59.98 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
..+.|.||+|+||||++++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4588999999999999999999985
No 433
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.44 E-value=0.031 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||.++||..+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4478999999999999999999874
No 434
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.42 E-value=0.03 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 435
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.40 E-value=0.045 Score=63.48 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
++.-+-|.||+|+|||||++++.+.+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 344488999999999999999998873
No 436
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.35 E-value=0.023 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
..-+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
No 437
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.32 E-value=0.1 Score=52.19 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=41.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc-----CCcEEEEecccc-------------------cCh------------HHHHHHH
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL-----KFDIYDLDLSAV-------------------QSN------------SELRFLL 289 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~-------------------~~~------------~~l~~~~ 289 (449)
.+|.||||||||+|+..||+.. +..++.+-+.+- .+. -.+..-|
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEyf 257 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRL 257 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999864 334333322110 011 1112335
Q ss_pred HcCCCCceEEeeccchhhh
Q 013128 290 LTMPSRSMLVIEDIDCSVK 308 (449)
Q Consensus 290 ~~~~~~~Il~iDeiD~l~~ 308 (449)
....+..+|++|++-+.+.
T Consensus 258 rd~G~dVLil~DslTR~A~ 276 (427)
T 3l0o_A 258 VEFNYDVVILLDSLTRLAR 276 (427)
T ss_dssp HHTTCEEEEEEECHHHHHH
T ss_pred HHcCCCEEEecccchHHHH
Confidence 5566788999999988764
No 438
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.045 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+++.|++|+|||+|+.++.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.32 E-value=0.037 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
--+++.|++|+|||+|+..+++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.31 E-value=0.057 Score=53.32 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=25.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.-+.|.||+|+|||+|++.|++....+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 34889999999999999999999976644
No 441
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.31 E-value=0.045 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..++|.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 442
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.31 E-value=0.027 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||++.||....
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4478999999999999999999874
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.30 E-value=0.073 Score=49.53 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=26.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc--CCcEEEEec
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL--KFDIYDLDL 276 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l--~~~~~~l~~ 276 (449)
..+++.|.+|+||||++..+|..+ +..+..+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 347788999999999999999876 556555553
No 444
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.30 E-value=0.044 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.-|.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34778899999999999999998754
No 445
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.30 E-value=0.34 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+.+.|++|+|||||+.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999983
No 446
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.29 E-value=0.02 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
..+.|.||+|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999984
No 447
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.28 E-value=0.048 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.5
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-+.|.||||+|||||+++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999876
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.27 E-value=0.046 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 449
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.27 E-value=0.12 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-+.|.|+||+|||+|+.++++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35889999999999999999874
No 450
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.23 E-value=0.043 Score=47.39 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
--+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998753
No 451
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.20 E-value=0.034 Score=58.01 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCCcceEEeCCCCCCHHHHHHH--HHHHc
Q 013128 240 RAWKRGYLLYGPPGTGKSSLIAA--MANQL 267 (449)
Q Consensus 240 ~~~~rg~LL~GPpGtGKT~la~a--iA~~l 267 (449)
++.+..++|.||+|+|||+|++. ++...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34456799999999999999999 45544
No 452
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.17 E-value=0.064 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-+.|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999954
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.16 E-value=0.04 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-|.|.|++|+||||.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999988
No 454
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.16 E-value=0.034 Score=48.45 Aligned_cols=22 Identities=41% Similarity=0.678 Sum_probs=20.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+.|.|+||+|||+|+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999975
No 455
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.14 E-value=0.05 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-++|.|++|+|||+|+..+.+.-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999998753
No 456
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.14 E-value=0.099 Score=49.15 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
.+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999875
No 457
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.12 E-value=0.032 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=22.2
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||.|+|||||++.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 458
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.11 E-value=0.051 Score=47.09 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998643
No 459
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.09 E-value=0.072 Score=54.32 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=24.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.-+.|.||+|||||+|++.||+....+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 34889999999999999999999976543
No 460
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.03 E-value=0.039 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+++.|++|+|||+|+..+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 461
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.02 E-value=0.053 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-++|.|++|+|||+|+..+.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999998887753
No 462
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=93.02 E-value=0.05 Score=42.37 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=43.9
Q ss_pred EeCCCCHHHHHHHHHHHhCcCCCCCHHHHHHHHHcc-CCCHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHH
Q 013128 374 HMSYCNTSVFKQLAFNYLGISHHYLFEQIEELIKEV-NVTPAEVAGELMK-------STNAEVSLNGLVKFLHAKM 441 (449)
Q Consensus 374 ~l~~p~~~~r~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~-------~~~~~~al~~l~~~l~~~~ 441 (449)
+-++|+.++|++|++.++......-.-+++.+++.+ +||+|||.+++.. ........+.+.++++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999865332222345566554 7999999888743 1222334455555555443
No 463
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.01 E-value=0.053 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998764
No 464
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.99 E-value=0.022 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~ 265 (449)
--++|.|++|+|||+|+.++++
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999884
No 465
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.99 E-value=0.045 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-+++.|++|+|||+|+.++++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999973
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.97 E-value=0.053 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
-+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 467
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.93 E-value=0.1 Score=52.00 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=27.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc---CCcEEEEec
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL---KFDIYDLDL 276 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 276 (449)
..++++.||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4579999999999999999998765 556666664
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.92 E-value=0.084 Score=47.97 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc--CCcEEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL--KFDIYDL 274 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l--~~~~~~l 274 (449)
=|.|.|+.|+||||.++.++..| +.+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 36788999999999999999998 4555543
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.89 E-value=0.086 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.7
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-++|.|++|+|||+|+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468888999999999999999886
No 470
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.88 E-value=0.027 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.-+.|.||+|||||||.+.||....
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4478999999999999999999873
No 471
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.87 E-value=0.057 Score=47.66 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
-.++|.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 472
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.86 E-value=0.032 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34488999999999999999999873
No 473
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.85 E-value=0.056 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.6
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-+++.|++|+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 474
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.85 E-value=0.05 Score=55.85 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 241 AWKRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 241 ~~~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+.-+.|.||.|+|||||++.|++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 334558999999999999999999987
No 475
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.84 E-value=0.043 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999864
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.84 E-value=0.061 Score=52.33 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIY 272 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 272 (449)
.+|+||.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 578999999999999999999885 54444
No 477
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.77 E-value=0.025 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..-+.|.|++|+|||||++++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448999999999999999987543
No 478
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.75 E-value=0.051 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
.-++|.|++|+|||+|+.++.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999854
No 479
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.74 E-value=0.12 Score=54.27 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=26.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC---CcEEEEe
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK---FDIYDLD 275 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~ 275 (449)
.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4588999999999999999999874 4555555
No 480
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.64 E-value=0.049 Score=54.69 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.0
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.-+.|.||+|||||||+++||..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 481
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.63 E-value=0.045 Score=47.84 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=21.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHc
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
...+++.|++|+|||+|+.++.+.-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998643
No 482
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.61 E-value=0.045 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=19.5
Q ss_pred ceEEeCCCCCCHHHHHHH-HHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAA-MANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~a-iA~~l 267 (449)
-+++.|++|+|||+|+.. +.+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999 54443
No 483
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.58 E-value=0.049 Score=47.73 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-+++.|++|+|||+|+.++.+.-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 459999999999999999998753
No 484
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.51 E-value=0.046 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.2
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
..+.|.|+||+|||||+.++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.50 E-value=0.056 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.3
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHc
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l 267 (449)
.-++|.|++|+|||+|+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 459999999999999999998754
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.43 E-value=0.035 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 242 WKRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 242 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
.+.-+.|.||.|+|||||++.|+..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 345588999999999999999999874
No 487
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.42 E-value=0.066 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.-+-|.||.|+|||||+++|+..+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 488
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.38 E-value=0.076 Score=47.15 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~ 266 (449)
-++|.|+||+|||+|+..+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 489
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.38 E-value=2.3 Score=42.62 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=30.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHcChhHHhhhcC---CCCcceEEeCCCCCCHHHH
Q 013128 206 MTFKTLALDSELKREITEDLENFMNGKEYYTRIGR---AWKRGYLLYGPPGTGKSSL 259 (449)
Q Consensus 206 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~l 259 (449)
.+|+++...+.+.+.+.+. -+..+.-++...+ ...+.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKS---GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 4688888777766655331 1112222222211 1246799999999999984
No 490
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.37 E-value=0.022 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHcC
Q 013128 246 YLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
+.|.||+|+|||+|+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999999884
No 491
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.37 E-value=0.064 Score=53.20 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.1
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLK 268 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~ 268 (449)
..+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4588999999999999999998665
No 492
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.35 E-value=0.06 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred cceEEeCCCCCCHHHHHHHHHHH
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQ 266 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~ 266 (449)
--+++.|++|+|||+|+..+++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999975
No 493
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.30 E-value=0.051 Score=52.40 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.4
Q ss_pred cceEEeCCCCCCHHHHHHHHHHHcCC
Q 013128 244 RGYLLYGPPGTGKSSLIAAMANQLKF 269 (449)
Q Consensus 244 rg~LL~GPpGtGKT~la~aiA~~l~~ 269 (449)
.-+.|.||+|+|||||+++|+.....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 45789999999999999999987654
No 494
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.29 E-value=0.063 Score=54.48 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l 267 (449)
+.|.||+|+|||||+++|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 7799999999999999999863
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.29 E-value=0.069 Score=49.14 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=22.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
-+.|.||.|+||||+++.|+.. +..+..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 3778999999999999999987 444443
No 496
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.27 E-value=0.064 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.1
Q ss_pred CcceEEeCCCCCCHHHHHHHHHH
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMAN 265 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~ 265 (449)
...+++.|++|+|||+|+.++.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999998873
No 497
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.26 E-value=0.059 Score=52.36 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=24.4
Q ss_pred CcceEEeCCCCCCHHHHHHHHHHHcCCcEEE
Q 013128 243 KRGYLLYGPPGTGKSSLIAAMANQLKFDIYD 273 (449)
Q Consensus 243 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 273 (449)
.+|+||.||+|+|||++|.++.. -|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 57899999999999999988765 4555553
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.23 E-value=0.12 Score=46.58 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=24.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHc---CCcEEEE
Q 013128 246 YLLYGPPGTGKSSLIAAMANQL---KFDIYDL 274 (449)
Q Consensus 246 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l 274 (449)
|.|.|+.|+||||.++.+++.| |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4678999999999999999998 5666554
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.071 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHc
Q 013128 245 GYLLYGPPGTGKSSLIAAMANQL 267 (449)
Q Consensus 245 g~LL~GPpGtGKT~la~aiA~~l 267 (449)
.+++.|++|+|||+|+.++.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999763
No 500
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.03 E-value=0.34 Score=49.88 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=38.9
Q ss_pred eEEeCCCCCCHHHH-HHHHHHHcCCcEEEE--eccccc-ChHHHHHHHHcC--CCCceEEeeccchh
Q 013128 246 YLLYGPPGTGKSSL-IAAMANQLKFDIYDL--DLSAVQ-SNSELRFLLLTM--PSRSMLVIEDIDCS 306 (449)
Q Consensus 246 ~LL~GPpGtGKT~l-a~aiA~~l~~~~~~l--~~s~~~-~~~~l~~~~~~~--~~~~Il~iDeiD~l 306 (449)
.+|.|++|||||+| +..|++..+.+++.+ -+.+-. .-.++...+... -..+++|.--.|..
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 231 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEP 231 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSC
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCC
Confidence 99999999999999 679999998886533 222221 112233333332 35778777666543
Done!