Query 013129
Match_columns 449
No_of_seqs 261 out of 1841
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 00:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.4E-54 3E-59 417.4 49.9 414 31-448 12-431 (455)
2 PRK00187 multidrug efflux prot 100.0 9E-50 2E-54 387.8 51.7 415 31-448 5-432 (464)
3 PRK10189 MATE family multidrug 100.0 1.2E-49 2.6E-54 386.9 52.3 412 34-448 27-450 (478)
4 PRK09575 vmrA multidrug efflux 100.0 3.2E-48 7E-53 376.4 49.5 413 32-448 8-424 (453)
5 PRK01766 multidrug efflux prot 100.0 2.1E-47 4.5E-52 372.7 50.9 418 28-448 4-430 (456)
6 PRK10367 DNA-damage-inducible 100.0 3.4E-47 7.3E-52 366.3 50.1 408 32-448 5-419 (441)
7 TIGR00797 matE putative efflux 100.0 7.2E-37 1.6E-41 288.1 42.8 337 44-383 1-341 (342)
8 TIGR01695 mviN integral membra 100.0 7.3E-36 1.6E-40 295.9 47.8 401 38-448 2-416 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 1.1E-35 2.3E-40 293.7 43.7 400 39-448 2-422 (488)
10 KOG1347 Uncharacterized membra 100.0 1E-35 2.3E-40 283.9 31.3 417 28-445 20-437 (473)
11 PRK15099 O-antigen translocase 100.0 5.5E-34 1.2E-38 274.9 43.4 393 38-448 3-400 (416)
12 PF03023 MVIN: MviN-like prote 100.0 7.1E-28 1.5E-32 232.5 45.9 372 66-446 5-389 (451)
13 PRK10459 colanic acid exporter 100.0 3.2E-27 7E-32 233.1 43.7 386 35-447 4-392 (492)
14 COG0728 MviN Uncharacterized m 100.0 2.1E-26 4.4E-31 218.3 46.6 406 34-445 5-422 (518)
15 COG2244 RfbX Membrane protein 100.0 4.4E-25 9.6E-30 217.4 38.7 384 34-436 4-389 (480)
16 PRK00187 multidrug efflux prot 99.9 4.2E-21 9.2E-26 187.0 27.0 206 30-236 230-442 (464)
17 PRK01766 multidrug efflux prot 99.9 3.7E-20 8E-25 181.0 26.3 208 30-238 233-442 (456)
18 PRK10189 MATE family multidrug 99.9 9E-20 1.9E-24 177.8 28.1 209 31-240 254-464 (478)
19 COG0534 NorM Na+-driven multid 99.9 6.4E-20 1.4E-24 177.2 26.7 209 28-238 233-443 (455)
20 PRK09575 vmrA multidrug efflux 99.9 3.6E-19 7.8E-24 173.2 27.0 205 31-238 229-436 (453)
21 PRK10367 DNA-damage-inducible 99.8 7.1E-19 1.5E-23 169.9 24.5 194 253-448 6-200 (441)
22 TIGR01695 mviN integral membra 99.8 8.6E-18 1.9E-22 166.7 32.3 205 32-238 219-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.4E-16 2.9E-21 145.1 33.8 271 38-324 1-272 (273)
24 PF01554 MatE: MatE; InterPro 99.8 8.2E-19 1.8E-23 146.4 8.3 162 264-427 1-162 (162)
25 PF03023 MVIN: MviN-like prote 99.8 1E-15 2.3E-20 148.1 31.1 204 33-238 195-403 (451)
26 TIGR02900 spore_V_B stage V sp 99.7 4.4E-16 9.6E-21 154.0 25.0 204 30-238 219-434 (488)
27 COG0728 MviN Uncharacterized m 99.7 3.6E-14 7.9E-19 135.3 34.3 204 33-238 229-437 (518)
28 PF01554 MatE: MatE; InterPro 99.7 4.8E-18 1E-22 141.7 6.3 160 44-204 1-162 (162)
29 PRK10459 colanic acid exporter 99.7 2.7E-14 5.9E-19 141.2 33.8 201 32-238 203-405 (492)
30 TIGR00797 matE putative efflux 99.7 1.6E-15 3.6E-20 142.8 21.8 182 264-448 1-185 (342)
31 PRK15099 O-antigen translocase 99.7 8.6E-15 1.9E-19 141.5 26.8 201 31-238 210-412 (416)
32 PF13440 Polysacc_synt_3: Poly 99.7 6.7E-13 1.4E-17 119.2 30.7 247 54-323 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 2.1E-13 4.6E-18 134.5 26.2 187 31-223 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.2 2.1E-08 4.6E-13 98.2 29.9 405 39-445 4-455 (549)
35 KOG2864 Nuclear division RFT1 99.1 3.5E-06 7.6E-11 77.6 34.0 404 34-445 6-434 (530)
36 PF07260 ANKH: Progressive ank 99.0 1.4E-06 3.1E-11 76.6 28.6 313 32-356 7-343 (345)
37 KOG1347 Uncharacterized membra 99.0 1.7E-08 3.6E-13 97.5 17.6 190 252-445 24-215 (473)
38 PF04506 Rft-1: Rft protein; 98.7 5.1E-06 1.1E-10 81.7 21.9 203 35-238 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.5 1.7E-05 3.7E-10 64.4 17.2 79 158-238 2-80 (146)
40 KOG2864 Nuclear division RFT1 98.2 0.0011 2.3E-08 61.7 22.8 201 36-238 239-449 (530)
41 PF13440 Polysacc_synt_3: Poly 97.4 0.02 4.3E-07 51.0 18.1 123 279-417 8-131 (251)
42 PF07260 ANKH: Progressive ank 97.4 0.067 1.5E-06 47.9 19.9 154 253-416 8-168 (345)
43 PF01943 Polysacc_synt: Polysa 97.4 0.025 5.5E-07 50.9 18.4 160 260-432 3-163 (273)
44 COG4267 Predicted membrane pro 97.3 0.12 2.6E-06 47.3 35.1 319 85-429 73-413 (467)
45 PF14667 Polysacc_synt_C: Poly 97.3 0.00057 1.2E-08 55.4 5.7 66 380-447 2-67 (146)
46 PF04505 Dispanin: Interferon- 73.9 21 0.00046 25.4 6.7 42 310-351 33-74 (82)
47 PF10160 Tmemb_40: Predicted m 46.6 2.1E+02 0.0046 25.4 10.6 87 328-417 109-195 (261)
48 COG4267 Predicted membrane pro 44.2 2.9E+02 0.0063 26.3 17.0 108 308-429 75-182 (467)
49 KOG2234 Predicted UDP-galactos 34.8 3.9E+02 0.0084 25.0 16.9 76 218-302 49-127 (345)
50 PF03904 DUF334: Domain of unk 33.3 1.8E+02 0.0038 25.2 6.3 37 110-146 144-180 (230)
51 PF14184 YrvL: Regulatory prot 29.2 2.9E+02 0.0062 21.8 11.9 100 117-218 5-105 (132)
52 COG4176 ProW ABC-type proline/ 27.1 2.9E+02 0.0062 24.8 6.8 80 32-113 199-285 (290)
53 PF06609 TRI12: Fungal trichot 25.5 7.5E+02 0.016 25.4 30.6 68 345-414 320-387 (599)
54 PF01102 Glycophorin_A: Glycop 23.5 1.1E+02 0.0023 23.8 3.2 10 214-223 67-76 (122)
55 PRK10739 putative antibiotic t 22.2 4.9E+02 0.011 22.1 9.7 56 318-377 21-76 (197)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.4e-54 Score=417.41 Aligned_cols=414 Identities=26% Similarity=0.372 Sum_probs=392.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
.++..|+++++++|.+++++.+.+++.+|++++||+|++++++.+++.++..+ ...+..|++.+..+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 56689999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (449)
++++..++++.++++.+++..+ .+.+.++++.+++.+++..+.+.+|+++..++.++..+...+.+.+|+.||+|.++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999977666 689999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-cccchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCCchhhhhchHHHHHHHHHH
Q 013129 190 VSLVGLLVNVLTSWLFVYV-LD-FGVVGAALALDISWWVLCFGLYGYAAFGGC--PLTWSGFSTQAFSGLWEYTKLSVAA 265 (449)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 265 (449)
.+.++.++|+++|++++++ ++ +|+.|+++||++++.+.+++..++++|++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999988752 3333334355567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 013129 266 GVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQST 345 (449)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 345 (449)
++++......+...+.+++++| ++.+|+|+++.++.++.++++.+++++..|.+++++|+||+|++|+..+.+++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q 013129 346 LIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG 425 (449)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 425 (449)
.+++..+++++++++++.++|++|+|+.+.+..++++.+..+++++.+.+..+++|+.||+|.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hcccchhhhhccccccc
Q 013129 426 FLIGWV-FKLGVGVTSAVPFSSVV 448 (449)
Q Consensus 426 ~~l~~~-~~~~~~~~~a~~~s~~~ 448 (449)
+++.++ +|..+ +|+++..++.+
T Consensus 409 ~~l~~~~~g~~G-vw~~~~~~~~~ 431 (455)
T COG0534 409 YLLGFFFLGLAG-VWIGFPLSLIL 431 (455)
T ss_pred HHHhhhcccchH-HHHHHHHHHHH
Confidence 999999 88888 99999988764
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=9e-50 Score=387.79 Aligned_cols=415 Identities=20% Similarity=0.257 Sum_probs=377.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
.+++.|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++++..+.++|++|++|+|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 35689999999999999999999999999999999999999999999999988 67788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (449)
++++..+.++.+...++++..++..+.++++.+++.|+|..+.+.+|+++..++.++..+...+++++|+.||++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999988877766557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----CcccchhHHHHHHHHHHHHHHHHHHHHhcc--ccccc-cCCchhhhhchHHHHHHHH
Q 013129 191 SLVGLLVNVLTSWLFVYVL----DFGVVGAALALDISWWVLCFGLYGYAAFGG--CPLTW-SGFSTQAFSGLWEYTKLSV 263 (449)
Q Consensus 191 ~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~ 263 (449)
+.++.++|+++++++++.+ ++|+.|+++|+.+++.+..+...+++++++ .+.+. ++..+.+++..|+++|.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999753 479999999999999888877666666542 11221 1222334566899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 013129 264 AAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQ 343 (449)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 343 (449)
|.+++++.+.....++..++++++ +.++++++++.++..+.+.++.+++++..+.++|++|+||+|++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhcCC--ch---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHH
Q 013129 344 STLIGLILCVIIMILHDKVALIFTS--SN---DVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYY 418 (449)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 418 (449)
+..++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||+|.+++.++.+.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999974 44 678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc-hhhhhccccccc
Q 013129 419 IIGLPLGFLIGWVFKLGV-GVTSAVPFSSVV 448 (449)
Q Consensus 419 ~~~i~~~~~l~~~~~~~~-~~~~a~~~s~~~ 448 (449)
++++|+.+++.+.+|++. ++|+++.+++.+
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~ 432 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLAC 432 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHH
Confidence 999999999999877666 399999887753
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.2e-49 Score=386.90 Aligned_cols=412 Identities=17% Similarity=0.191 Sum_probs=375.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHH
Q 013129 34 ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLG 113 (449)
Q Consensus 34 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~ 113 (449)
..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+ ...+..|++++.++.++|++|+||+|+++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999888 78899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 013129 114 IYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLG--QPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (449)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (449)
+..++++.+++..+++.++ .+.+.++++.++. .|+|..+.+.+|+++..++.++..+...+++++|+.||++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 9999999999999888776 5778889999884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----CcccchhHHHHHHHHHHHHHHHHHHHHhc-c--ccccccC-CchhhhhchHHHHHHH
Q 013129 191 SLVGLLVNVLTSWLFVYVL----DFGVVGAALALDISWWVLCFGLYGYAAFG-G--CPLTWSG-FSTQAFSGLWEYTKLS 262 (449)
Q Consensus 191 ~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~ 262 (449)
+++..++|+++++++++.+ ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +.+.+++.+|+++|.|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999753 78999999999999999888776666543 2 1222222 1123456789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 013129 263 VAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVA 342 (449)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~ 342 (449)
+|.++..........+.+.+++.++ +.++|+|+++.++.++.+++..+++++..|.+++++|+||+|++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999888888888888888887 77999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Q 013129 343 QSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGL 422 (449)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 422 (449)
++..+++..+++++++++++..+|++|+|+.+.+..++++.+...++++.+.+..+.+++.||++.++.+++.+.|++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccc-hhhhhccccccc
Q 013129 423 PLGFLIGWVFKLGV-GVTSAVPFSSVV 448 (449)
Q Consensus 423 ~~~~~l~~~~~~~~-~~~~a~~~s~~~ 448 (449)
|+.+++....+++. ++|++..+++.+
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~~~~~~ 450 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMFLDWAV 450 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999988766665 399999887653
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.2e-48 Score=376.41 Aligned_cols=413 Identities=17% Similarity=0.201 Sum_probs=377.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
++..|++++.+.|.+++++...+++.+|+.+++++ |++++++++.+.++..+ ...+..+++.+.++.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 34779999999999999999999999999999997 99999999999999998 67788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (449)
++++..++++.+++..+++..+ .+.+.++++.+++.|++..+.+.+|+++..++.++..+.....+.+|+.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999988776 578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc-CCchhhhhchHHHHHHHHHHHHH
Q 013129 190 VSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWS-GFSTQAFSGLWEYTKLSVAAGVM 268 (449)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~ 268 (449)
.++.+.++|+++++++++.+++|+.|+++++.+++.+..++..+++++++.+.+++ +..+.+++..|++++.|+|..++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999988877776553322221 11123456689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 013129 269 LCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIG 348 (449)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (449)
.....+...+...+.+.+++ +.++|+++++.++..+.+.+..+++++..|.+++++|+||+|++|+..+.++++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888873 46799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCC-chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Q 013129 349 LILCVIIMILHDKVALIFTS-SNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFL 427 (449)
Q Consensus 349 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~ 427 (449)
++.++++..+++++..+|++ |+|+.+.+.+++++.+++.++++++.+..+.+++.||++.++..++.. +++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 788999999999999999999999999999999999999999999876 6889999999
Q ss_pred HHHhhcccchhhhhccccccc
Q 013129 428 IGWVFKLGVGVTSAVPFSSVV 448 (449)
Q Consensus 428 l~~~~~~~~~~~~a~~~s~~~ 448 (449)
+...+|..| +|+++.+++.+
T Consensus 405 l~~~~G~~G-vw~a~~~~~~~ 424 (453)
T PRK09575 405 LPKWLGVDG-VWLAMPLSNIA 424 (453)
T ss_pred HHHHHCcch-HhhHHHHHHHH
Confidence 988788888 99999988754
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.1e-47 Score=372.69 Aligned_cols=418 Identities=20% Similarity=0.370 Sum_probs=379.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 013129 28 TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAK 107 (449)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 107 (449)
.++.++..|++++.++|.+++++...+...+|+.+++++|++++++++.+.++... ...+..|++.+..+.+|+++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 44557789999999999999999999999999999999999999999999998776 67788999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhH
Q 013129 108 RYHMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQV 186 (449)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (449)
|+++.++..+.+..+.+..++++.+ ++.+.+++..+++.|++..+.+.+|+++.+++.++..+...+++++++.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 9999999999999999999988776 477778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCcccchhHHHHHHHHHHHHHHHHHHHHhcccc---ccccCCchhhhhchHHHH
Q 013129 187 IAWVSLVGLLVNVLTSWLFVYV----LDFGVVGAALALDISWWVLCFGLYGYAAFGGCP---LTWSGFSTQAFSGLWEYT 259 (449)
Q Consensus 187 ~~~~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 259 (449)
++..+.++.++|+++++++++. .++|+.|+++++.+++.+...+..++++|++.. ..++++.+.+++..|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999863 247999999999999999999888777655221 112222233456689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 013129 260 KLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIV 339 (449)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~ 339 (449)
+.++|.++++..+...+.++..++++++ ++++++++++.++.++...++.+++++..+.+++++|+||++++|+..+.
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~ 320 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYI 320 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999999999987 77899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHH
Q 013129 340 SVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYI 419 (449)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 419 (449)
+++++..++++.++++..+++++.++|++|+|+.+.+..++++..+..++.+++.+..+++++.||+|.++..++.+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 400 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 400 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHhhcccc-hhhhhccccccc
Q 013129 420 IGLPLGFLIGWVFKLGV-GVTSAVPFSSVV 448 (449)
Q Consensus 420 ~~i~~~~~l~~~~~~~~-~~~~a~~~s~~~ 448 (449)
+++|+.+++....+++. ++|+++.+++.+
T Consensus 401 ~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~ 430 (456)
T PRK01766 401 LGLPLGYILALTDPMGPFGFWIGLIIGLTA 430 (456)
T ss_pred HHHHHHHHHHhccCCCceehHHHHHHHHHH
Confidence 99999999987765554 399999987754
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=366.34 Aligned_cols=408 Identities=18% Similarity=0.139 Sum_probs=357.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
+++.|+++|.++|.++++++..+++.+|+.+++++ |++++++++++.++..+ ...+..+++.+..+.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999999 78899999999999998 77788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (449)
++++..++++.++++.+++..+ ...+.++++.+++.|++..+.+.+|+++..++.++..+...+.+++|+.||+|.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 9999999999999999888776 477888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhcc-cc-ccccCCchhhhhchHHHHHHHHHHHH
Q 013129 190 VSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGG-CP-LTWSGFSTQAFSGLWEYTKLSVAAGV 267 (449)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 267 (449)
.++++.++|+++++++++.+++|+.|+++|+.+++.+.+++..+++.|++ .+ .+.+.++...++.+|+++|.+.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888777776542 11 11111111112458999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 013129 268 MLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLI 347 (449)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (449)
.+......+.+...+++++| +.++|+|+++.++.++.++++.+++++..|.+++++|+||+|++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCc---chhhHHHHHHHHHHHHHHH
Q 013129 348 GLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGW---QATVAYINLGCYYIIGLPL 424 (449)
Q Consensus 348 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~~ 424 (449)
+...+++++++++++..+|++|+|+.+.+..++++.++..+......+..+++++.+| +|.++.++..+.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764433344444555555555 9999999999876533322
Q ss_pred HHHHHHhhcccchhhhhccccccc
Q 013129 425 GFLIGWVFKLGVGVTSAVPFSSVV 448 (449)
Q Consensus 425 ~~~l~~~~~~~~~~~~a~~~s~~~ 448 (449)
+.+|..+ +|+++.+++.+
T Consensus 402 -----~~~g~~G-vw~a~~~~~~~ 419 (441)
T PRK10367 402 -----PWLGNHG-LWLALTVFLAL 419 (441)
T ss_pred -----HHcCchH-HHHHHHHHHHH
Confidence 3456666 99999887653
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=7.2e-37 Score=288.06 Aligned_cols=337 Identities=29% Similarity=0.507 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 013129 44 PAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVL 123 (449)
Q Consensus 44 p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 123 (449)
|.+++++...+...+|+.+++++|++++++++.+.++..+ ...+..|++++..+.++++.|+||+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998887 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 013129 124 FLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTS 202 (449)
Q Consensus 124 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 202 (449)
...+++.++ ++.+.+++..+++.|++..+.+..+++++.+..++..+.....+.+|+.||++.....+.++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 999988876 5788888988888788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-cccchhHHHHHHHHHHHHHHHHHHHHhc-cccccccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013129 203 WLFVY-VLD-FGVVGAALALDISWWVLCFGLYGYAAFG-GCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRIL 279 (449)
Q Consensus 203 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 279 (449)
+++++ .++ +|+.|+++++.+++.+..++..++.+|+ +.+.++++..+.+++..|+++++++|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 667 7899999999999999998887777653 33323222223344668999999999999999999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013129 280 ILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILH 359 (449)
Q Consensus 280 ~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (449)
+.+++.++ +.++++|+++.++.++...++.+++++..|.++++++++|.++.++..++++++.+.+.++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888876 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhcCCchHHHHHHHHHHHHH
Q 013129 360 DKVALIFTSSNDVLAEVDKLSFLL 383 (449)
Q Consensus 360 ~~i~~l~~~~~~~~~~~~~~l~i~ 383 (449)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888888764
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=7.3e-36 Score=295.86 Aligned_cols=401 Identities=14% Similarity=0.104 Sum_probs=335.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHH
Q 013129 38 LWQIVGPAIFSRISSYTMNIITQAFAGH-LGDVEL-AAISIANTVIVGFNFGLL-LGMASALETLCGQAFGAKRYHMLGI 114 (449)
Q Consensus 38 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~-~g~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~ 114 (449)
+.|.+.-..++++++.+++++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 599999 899999999877344433 578888777776654322 56676
Q ss_pred HHHHHHHHHHHHH-HHHHH-HHHhHHHHHHHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 013129 115 YMQRSWIVLFLFC-FLLLP-FYVFATPLLKLL--GQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (449)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (449)
...++.......+ ++..+ .+.+.+++..++ +.+++..+.+.+|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6666665555444 44444 567778887877 3466667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHHH
Q 013129 191 SLVGLLVNVLTSWLFVYVLDFGVVGAA--LALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVM 268 (449)
Q Consensus 191 ~~~~~~~~i~l~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 268 (449)
+.+..++++....++ ..++|..|++ +++.+++.+..++..++.+|++.+.+. +++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 999888776643333 3467999988 999999999888877776654322211 121 2345689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 013129 269 LCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMM-IPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLI 347 (449)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (449)
+....+...++..+.+.++ +.++++|+.+.++.+++.. +..+++++..|.+++++|++|++++|+..++++++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877765 6688999999999998875 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhhhcCC----chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Q 013129 348 GLILCVIIMILHDKVALIFTS----SNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLP 423 (449)
Q Consensus 348 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 423 (449)
+.|.++++.++++++..++++ |+|.++.+.+++++++++.++.+++.+..+.+++.||+|.+++.+..+ .++++|
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHH
Confidence 999999999999999999976 456788899999999999999999999999999999999999999987 488999
Q ss_pred HHHHHHHhhcccchhhhhccccccc
Q 013129 424 LGFLIGWVFKLGVGVTSAVPFSSVV 448 (449)
Q Consensus 424 ~~~~l~~~~~~~~~~~~a~~~s~~~ 448 (449)
+.+++.+.+|..| +|+|+.+++.+
T Consensus 393 l~~~l~~~~G~~G-~~~a~~i~~~~ 416 (502)
T TIGR01695 393 LSLLLIFPLGLVG-IALATSAASMV 416 (502)
T ss_pred HHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 9999999899888 99999887753
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.1e-35 Score=293.70 Aligned_cols=400 Identities=14% Similarity=0.153 Sum_probs=333.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHH
Q 013129 39 WQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQ 117 (449)
Q Consensus 39 ~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~ 117 (449)
.|.+.|.+++++...+.+++|+.+++|+ |++++|.++.+.++..++......|++++..+.++++.|++|+++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 5788999999999999999999999996 999999999999999884555567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 013129 118 RSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLL 196 (449)
Q Consensus 118 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 196 (449)
+++.+....+++.++ +..+.+++...+..+++. ..++++..+..++..+....++.+|+.+|.+.....+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 999999999888776 466666666666555533 346788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCcccchhHHHHHHHHHHHHHHHHHHHHhccc-c--ccccCCchhhhhchHHHHHHHHHHHHH
Q 013129 197 VNVLTSWLFVYV-----LDFGVVGAALALDISWWVLCFGLYGYAAFGGC-P--LTWSGFSTQAFSGLWEYTKLSVAAGVM 268 (449)
Q Consensus 197 ~~i~l~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 268 (449)
+++.++..++.. .+.++.|+++++.+++.+..+...++.+|++. + ..+.+..+.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776665542 13467888899999998888877666554421 1 111112233356789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 013129 269 LCLENWYYRILILMTGYLKN-----AT---LAVDAL-SVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIV 339 (449)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~-----~~---~~v~~~-~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~ 339 (449)
++...+...+|+.++++... .. ..++.| +++.++..++..+..+++++..|.++++.|++|+|+.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888765321 01 233333 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHH
Q 013129 340 SVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYI 419 (449)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 419 (449)
.+++...++.|.++++..+++++..++.++++ +.++++++++..++.+.+.+..+.+++.||+|..++.+..+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999986543 678899999999999999999999999999999999999985 8
Q ss_pred HHHHHHHHHH--Hhhcccchhhhhccccccc
Q 013129 420 IGLPLGFLIG--WVFKLGVGVTSAVPFSSVV 448 (449)
Q Consensus 420 ~~i~~~~~l~--~~~~~~~~~~~a~~~s~~~ 448 (449)
+++++.+++. +.+|..| +|+++.+++++
T Consensus 393 ~~i~l~~~l~~~~~~G~~G-aaia~~i~~~~ 422 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYG-YAITFIITSVL 422 (488)
T ss_pred HHHHHHHHHHhccccccHH-HHHHHHHHHHH
Confidence 9999999987 7788888 99998887653
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1e-35 Score=283.87 Aligned_cols=417 Identities=42% Similarity=0.720 Sum_probs=395.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 013129 28 TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAK 107 (449)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 107 (449)
++..+++.|++.+++.|.++..+.+.+...+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|++
T Consensus 20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~ 99 (473)
T KOG1347|consen 20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAK 99 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccc
Confidence 33347899999999999999999999999999999999999999999999999998788899999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHH
Q 013129 108 RYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (449)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (449)
+++....+.+++.......+++...++.+.+++...++.|++....+..|.++..+..+..........++|++++....
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHH
Q 013129 188 AWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGV 267 (449)
Q Consensus 188 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 267 (449)
.+......++|+.+++++++..++|..|++++..+++.+.......|.........|..++++ ++.++++++.++|.++
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999888887765556667767777 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 013129 268 MLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLI 347 (449)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (449)
+.+++.+.+.+..++.+.++++..+++..++..++....++++.+++.+...++++.+|+++++.+|...+.....++..
T Consensus 259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~ 338 (473)
T KOG1347|consen 259 MICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAI 338 (473)
T ss_pred eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999878899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Q 013129 348 GLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFL 427 (449)
Q Consensus 348 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~ 427 (449)
+...+..++..++.+..+|++|+|+.+......++++...++++.+.+..++.++.|++++..++|+.+++++++|..++
T Consensus 339 g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~ 418 (473)
T KOG1347|consen 339 GASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLY 418 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccc-hhhhhcccc
Q 013129 428 IGWVFKLGV-GVTSAVPFS 445 (449)
Q Consensus 428 l~~~~~~~~-~~~~a~~~s 445 (449)
+....++++ ++|.++..+
T Consensus 419 l~~~~~~g~~glw~G~~~~ 437 (473)
T KOG1347|consen 419 LGFFTKFGVKGLWIGILLG 437 (473)
T ss_pred EEEEEecCceEEEeehHHH
Confidence 998777777 499887654
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.5e-34 Score=274.91 Aligned_cols=393 Identities=13% Similarity=0.032 Sum_probs=332.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 013129 38 LWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYM 116 (449)
Q Consensus 38 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 116 (449)
+.|.+.....+++...+.+++...+++|+ |++++|.++...++..++......|++++..+.++++ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 67888899999999999999999999996 9999999999999999756666889999988889987 67888899999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 013129 117 QRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGL 195 (449)
Q Consensus 117 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 195 (449)
++++.+.+..++++++ ++.+.+++...+..+++. ..+..+..+..++..+.....+.+|+.||++.++....++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776 578888888877766542 34556666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCchhhhhchHHHHHHHHHHHHHHHHHHH
Q 013129 196 LVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGC-PLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENW 274 (449)
Q Consensus 196 ~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 274 (449)
++|+.+ .++.... .|+.|+++++++++.+..+...++++|++. +.++.+.+ .+++..|+++++|+|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444332 399999999999999988777766665422 22111222 2346689999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 013129 275 YYRILILMTG-YLKNATLAVDALSVCMSINGW-QMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILC 352 (449)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~v~~~~i~~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (449)
....++.+++ .++ ++++|.|+.+.|+.+. ...+..+++++..|.+++. +|.|+.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 665 7799999999999884 5789999999999999984 6789999999999999999999999
Q ss_pred HHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 013129 353 VIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVF 432 (449)
Q Consensus 353 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 432 (449)
+.+.+++++++.++.+|+ ++++.+++++++++.++...+......+...++++.....++.. .++.+|+.+++.+.+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~ 385 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLH 385 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999876 77789999999999999988888888888888888888777765 689999999999999
Q ss_pred cccchhhhhccccccc
Q 013129 433 KLGVGVTSAVPFSSVV 448 (449)
Q Consensus 433 ~~~~~~~~a~~~s~~~ 448 (449)
|..| +++++++++++
T Consensus 386 G~~G-~a~a~~is~~~ 400 (416)
T PRK15099 386 GALG-AAQAYMATYIV 400 (416)
T ss_pred hhHH-HHHHHHHHHHH
Confidence 9999 99999998864
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.98 E-value=7.1e-28 Score=232.53 Aligned_cols=372 Identities=15% Similarity=0.134 Sum_probs=319.1
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 013129 66 LGDV-ELAAISIANTVIVGFNFGLL-LGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLK 142 (449)
Q Consensus 66 ~g~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 142 (449)
+|.. +..+|..+.++..++...+. .+++++..|..++.. ++++|+.++..++.........+.+++ .+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655 56799999999998555554 468999999999998 788889899998888777777766666 5888899988
Q ss_pred Hc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---cchhH
Q 013129 143 LL--GQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFG---VVGAA 217 (449)
Q Consensus 143 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~~ 217 (449)
.+ +.+++..+.+.+.+++..+..++..+..++.+++|+++|...+....++.++..++...++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 4467888899999999999999999999999999999999999999998877755544433333 46 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 013129 218 LALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALS 297 (449)
Q Consensus 218 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 297 (449)
++..++..+..++.+...+|.+.+.+.+ ++++ .+..|++++...|..+.....++...+++.+.+.++ +-++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 9999999999988888887764432221 2222 245889999999999999999999999999999988 45788999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCC----chHH
Q 013129 298 VCMSINGWQMM-IPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTS----SNDV 372 (449)
Q Consensus 298 i~~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~ 372 (449)
.+.++.+++.. +..+++++..|.++++..++|.++.++..++.++....+.+|.++++..++++++++++. |+|.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 99999999884 578999999999999999999999999999999999999999999999999999999862 5566
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhccccc
Q 013129 373 LAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSS 446 (449)
Q Consensus 373 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~a~~~s~ 446 (449)
.+...+.+.+++++.++.+++......+++.||+|.++..+..+ .++++.+.+++.+.+|..| +.+++.++.
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~~g~~G-lala~sl~~ 389 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPFFGVAG-LALATSLSA 389 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 88899999999999999999999999999999999999999987 5899999999999999888 777777665
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=3.2e-27 Score=233.11 Aligned_cols=386 Identities=9% Similarity=0.052 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHH
Q 013129 35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLG 113 (449)
Q Consensus 35 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~ 113 (449)
.++..+.+.+..+++....+.+++...+++|+ ||+++|.++.+..+..++......|++++.. +. +|. .+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CH
Confidence 46788999999999999999999999999996 9999999999999999867777788888742 21 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 013129 114 IYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSL 192 (449)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 192 (449)
+...+.+.+....++++.++ +.+.+++...++ +++ ....+++..+..++..+.......+++.+|.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34455666666666666554 444555544444 333 234567777777888888888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHHHHHHH
Q 013129 193 VGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLE 272 (449)
Q Consensus 193 ~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 272 (449)
...+...+....+.. .++|..+.+++..+++.+..+...+..++ +.+.++ ++ +++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 887777766665554 36799999999999987776654333322 222111 11 2355789999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 013129 273 NWYYRILILMTGYLKNATLAVDALSVCMSINGWQMM-IPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLIL 351 (449)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (449)
.+..++|+.+++.+.+ +.++|.|+.+.++.+.+.. +...++++..|.+++. ++|.++.++..++..++...+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888764 7899999999999988654 4566788999999985 5788999999999999999999999
Q ss_pred HHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013129 352 CVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWV 431 (449)
Q Consensus 352 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 431 (449)
.+++.+++++++.++.+|+ +.++.+.++++++..++.....+....+++.||+|..+..++.. .++.+|..+.+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~ 377 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh
Confidence 9999999999999998766 78899999999999999999999999999999999999999886 58889998888888
Q ss_pred hcccchhhhhcccccc
Q 013129 432 FKLGVGVTSAVPFSSV 447 (449)
Q Consensus 432 ~~~~~~~~~a~~~s~~ 447 (449)
+|..+ +.+++.+++.
T Consensus 378 ~G~~g-~a~a~~i~~~ 392 (492)
T PRK10459 378 AGLIG-VALGFLLVQI 392 (492)
T ss_pred ccHHH-HHHHHHHHHH
Confidence 88877 7777766653
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=2.1e-26 Score=218.28 Aligned_cols=406 Identities=12% Similarity=0.045 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-Chh-hHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHhhhcCCccc
Q 013129 34 ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDV-ELAAISIANTVIVGFNFGLLL-GMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 34 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~-~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~is~~~g~~~~~ 110 (449)
..++++|.+.-....++++.+.+++-..+++.+ |+. ...++.++.++.+++--.+.- .++++..|...++..++++|
T Consensus 5 ~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~ 84 (518)
T COG0728 5 SKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEE 84 (518)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhh
Confidence 346788888889999999999999988888885 885 667999999999986554444 46899999999998777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-cCC--ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKL-LGQ--PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQV 186 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (449)
+.++..+..........+..++ ..++.+.+.+. ... |++....+....+++.+..++.++.....+.+++.+|...
T Consensus 85 ~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 85 AARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeech
Confidence 7777777766555555555555 46666666634 333 2333446888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHH
Q 013129 187 IAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAG 266 (449)
Q Consensus 187 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 266 (449)
+.+..+..++.-+.....+.+..+....+.+++..++-+.+..+.+..++|.+...+++ +.+++ +..|++.+...|..
T Consensus 165 ~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~~-~~lk~~~~~~~p~~ 242 (518)
T COG0728 165 PAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFKD-PGLKRFLKLMLPAL 242 (518)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCCc-hhHHHHHHHHHHHH
Confidence 99999998877664555444443223677889999999999999999998874333222 22221 45889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 013129 267 VMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQST 345 (449)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~-~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 345 (449)
+.....+++..+++.+.+.+. +-+++.+..+.++.+++. .+..+++++..|.+|++..++|.++.++..+.+++.++
T Consensus 243 l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999997 446779999999999999 66899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhhhcCC----chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q 013129 346 LIGLILCVIIMILHDKVALIFTS----SNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIG 421 (449)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 421 (449)
..++|.++++.++++|+.+++++ +++......+.+..+.++.++..+..+....+++.+|+|.++++++++ .+++
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHH
Confidence 99999999999999999999853 445577889999999999999999999999999999999999999998 5999
Q ss_pred HHHHHHHHHhhcccchhhhhcccc
Q 013129 422 LPLGFLIGWVFKLGVGVTSAVPFS 445 (449)
Q Consensus 422 i~~~~~l~~~~~~~~~~~~a~~~s 445 (449)
+.+++++...+|..+ +..+..++
T Consensus 400 ~~l~~~l~~~~~~~g-iala~s~a 422 (518)
T COG0728 400 ILLNLLLIPPLGHVG-LALATSLA 422 (518)
T ss_pred HHHHHHHHhhccchH-HHHHHHHH
Confidence 999999999999888 66665554
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=4.4e-25 Score=217.43 Aligned_cols=384 Identities=15% Similarity=0.105 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 013129 34 ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHML 112 (449)
Q Consensus 34 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 112 (449)
..+++.|.+.....+++...+..++....++|+ |++++|.++.+.++.+++......|+..+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 567899999999999999999999999999996 9999999999999999977777799999999999988665554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 013129 113 GIY-MQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVS 191 (449)
Q Consensus 113 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (449)
... ...........+.+.........+. ++ .....+++..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 3333333333333333222222221 11 234456778888899999999999999999999999994
Q ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHHHHHH
Q 013129 192 LVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCL 271 (449)
Q Consensus 192 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 271 (449)
..+ ..-......+.. .......++...+..........+..+++.+..+...+. .++..|+.+++++|....+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 111222222221 244555666666666655555555542211111111211 346689999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 013129 272 ENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLIL 351 (449)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (449)
..+..++|+++++.+.+ +.++|.|+.+.++......+..+++++..|.+++...++|.++.++..+++.++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013129 352 CVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWV 431 (449)
Q Consensus 352 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 431 (449)
.+++.++++++..++++++ +..+...+.++++..++.+...+....+++.||++..++.+..+. +.++.+.+.+++.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHh
Confidence 9999999999999998876 566999999999999999999999999999999999999999985 8899999999999
Q ss_pred hcccc
Q 013129 432 FKLGV 436 (449)
Q Consensus 432 ~~~~~ 436 (449)
+|..+
T Consensus 385 ~g~~g 389 (480)
T COG2244 385 FGLIG 389 (480)
T ss_pred hhhhh
Confidence 98888
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=4.2e-21 Score=187.03 Aligned_cols=206 Identities=17% Similarity=0.187 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 013129 30 RVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (449)
Q Consensus 30 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 109 (449)
..++..|+++|.++|.++.++.......+|..+++++|++++++++++.++..+ ...+..|++++.++.++|++|+||+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 346679999999999999999999999999999999999999999999999998 8889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC--Ch---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhch
Q 013129 110 HMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQ--PD---DVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLK 183 (449)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (449)
|++++..+.++.++...+++..+ ++.+.+++.+++.. ++ |..+.+..++++.+++.++..++.++.+.+||.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 99999999999999999987776 57889999988853 43 67888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHH
Q 013129 184 NQVIAWVSLVGL-LVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAA 236 (449)
Q Consensus 184 ~~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 236 (449)
++.++..++++. ++++++++++.+.+++|+.|+|+++.+++.+..+.....++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986 99999999999887899999999999999988877655553
No 17
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=3.7e-20 Score=180.99 Aligned_cols=208 Identities=19% Similarity=0.173 Sum_probs=192.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 013129 30 RVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (449)
Q Consensus 30 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 109 (449)
..++..|++++.++|..++.....+...++..+++++|++++++++++.++.++ ...+..|++.+.++.++|++|+||+
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 346689999999999999999999999999999999999999999999999998 7788999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHH
Q 013129 110 HMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA 188 (449)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (449)
+++++..+.++.++...+++..+ ++.+.+++..++..|++..+.+..++++..+..++..+.....+.+||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 99999999999999999888766 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 189 WVSLVGL-LVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 189 ~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
..++++. ++++++.+++.+..++|+.|+++++.+++.+..++..+++++.
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 7899999988877788999999999999999998887776643
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=9e-20 Score=177.83 Aligned_cols=209 Identities=19% Similarity=0.147 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
.++..|+++|.+.|..+......+...+.+.+++++|++++++++++.++.++ ...+..|++++.++.+++++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46789999999999999999999999998999999999999999999999998 77889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (449)
++++..+.+..++...++.+.+ ++.+.+++..+|.+|+|+.+.+..++++.++..++.+...+..+.+||.||++.++.
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 9999999999999998887776 578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 013129 190 VSLVG-LLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGC 240 (449)
Q Consensus 190 ~~~~~-~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 240 (449)
.+..+ .++.+++.+++....++|..|.|++..+++.+..++..+.+++.+.
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W 464 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRW 464 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99988 4777888888777678899999999999999999887777765533
No 19
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.87 E-value=6.4e-20 Score=177.20 Aligned_cols=209 Identities=20% Similarity=0.231 Sum_probs=195.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 013129 28 TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAK 107 (449)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 107 (449)
.+..++..|++++.+.|.++.++.......+.+.+++++|++.+++++++.++.++ ...+..|++++.++.+++++|+|
T Consensus 233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga~ 311 (455)
T COG0534 233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAG 311 (455)
T ss_pred cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456899999999999999999999999999999999999999999999999999 88899999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhH
Q 013129 108 RYHMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQV 186 (449)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (449)
|+|++++..+.+...++.+++...+ ++.+.+++..+|.+|+++.+.+..++++.....++.+.+....+.+||.||++.
T Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~ 391 (455)
T COG0534 312 NYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKI 391 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 9999999999999999999988776 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 187 IAWVSLVG-LLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 187 ~~~~~~~~-~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
++..++++ ..+.+++.+++.+.. +|..|.|++...++.+..+...++++|+
T Consensus 392 ~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 392 PFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 566778877777764 7999999999999999999998888765
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=3.6e-19 Score=173.24 Aligned_cols=205 Identities=14% Similarity=0.173 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGD-VELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 109 (449)
.++..|++++.+.|..+......+...+.+.+++++|+ +++++++++.++..+ ...+..|++++.++.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 45678999999999999999999999999999999975 689999999999998 8889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHH
Q 013129 110 HMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQ-PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (449)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (449)
|++++..+.++.+++..+++..+ ++.+.+++..+|.. |+|..+.+.+++++..++.++..+.....+++||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999988877 57899999999985 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 188 AWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 188 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
++.+....++++++.+++... +|+.|+|+++.+++.+..++..++++|+
T Consensus 388 ~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888777654 6999999999999999888887777654
No 21
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.84 E-value=7.1e-19 Score=169.91 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=180.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 013129 253 SGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKG 332 (449)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~ 332 (449)
++.|+++|.++|..+.++.......+|+.+++++++ +.++++.+++.++..+...+..+++.+..+.++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 457899999999999999999999999999999853 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHH
Q 013129 333 AGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYI 412 (449)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 412 (449)
+++..+.++..+...+++..+....+.+++..+++.|+|+.+.+.+++++..++.++..+.....+++++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-hhhhhccccccc
Q 013129 413 NLGCYYIIGLPLGFLIGWVFKLGV-GVTSAVPFSSVV 448 (449)
Q Consensus 413 ~~~~~~~~~i~~~~~l~~~~~~~~-~~~~a~~~s~~~ 448 (449)
++.+ .++++++.+++++.++++. ++++|+.+++.+
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~ 200 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYA 200 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 9998 5889999999998777666 499999988753
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.84 E-value=8.6e-18 Score=166.75 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 013129 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHM 111 (449)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 111 (449)
++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++.++....+..+++++..|.+++++++||+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999886667999999999999999874455678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhH
Q 013129 112 LGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQ----PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQV 186 (449)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (449)
.++..+++.......+++.++ +..+++++..++.+ |++..+.+..+++++++..++..+.....+.+++.||+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 999999999999999988877 57889999988765 5577888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 187 IAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 187 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
+++.+....++|+++++++++. +|..|+++++.+++.+...+..++.+|+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998865 5999999999999999998887777654
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.82 E-value=1.4e-16 Score=145.07 Aligned_cols=271 Identities=18% Similarity=0.169 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 013129 38 LWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYM 116 (449)
Q Consensus 38 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 116 (449)
++|.+.....+++...+.+++...+++|+ |++++|.++...++.+++......|++++..+..++...+ +++.+++.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 36788889999999999999999999996 9999999999999999866667899999998888876432 34445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 013129 117 QRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLL 196 (449)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 196 (449)
..........++++........ .++.++ .. ..+........++.........++++.++.+.....+....+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS----FFGNPS-LS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCch-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444433333222211 333332 11 122222222224677888889999999999999999999988
Q ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 013129 197 VNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYY 276 (449)
Q Consensus 197 ~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 276 (449)
...++...++.. +.+..+..++..++..+...+..++.+|+. +. +....+++..|++++++.|..++++...+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RP---RFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc---cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766666654 345888999999998888888877777653 11 1222224668899999999999999999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013129 277 RILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANE 324 (449)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~ 324 (449)
+.|..+++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999874 88999999999999999999999999999999985
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=8.2e-19 Score=146.39 Aligned_cols=162 Identities=23% Similarity=0.382 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 013129 264 AAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQ 343 (449)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 343 (449)
|.+++++.......++..++++++ ++++++++++.++..+...+..+++++..+.+++++|++|+|++++..++++++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Q 013129 344 STLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLP 423 (449)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 423 (449)
...++++.++++.++++++..+|++|+|+.+.+.+++++..++.++.++.....+++++.||+|..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 013129 424 LGFL 427 (449)
Q Consensus 424 ~~~~ 427 (449)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=1e-15 Score=148.11 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 013129 33 IESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHML 112 (449)
Q Consensus 33 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 112 (449)
+..|++++...|..++.....+...+|+.+.+++++.++++++.+.++.+++...+..++++...|..|+...+||.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46899999999999999999999999999999999999999999999999977788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHH
Q 013129 113 GIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLG----QPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (449)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (449)
++..++++.....+.+|.++ +..+++++++.+. .+++..+.....+++++++.++..+...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 99999999999999999987 6899999997664 366778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 188 AWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 188 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
+..+.++.++|++++.++.+. +|..|.++++.++..+...+.....+|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888876 6999999999999999999888888765
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=4.4e-16 Score=154.01 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-Chh---------hHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 013129 30 RVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDV---------ELAAI-SIANTVIVGFNFGLLLGMASALET 98 (449)
Q Consensus 30 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~---------~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~ 98 (449)
..++..|++++.+.|..++++...+...+|+.+++++ ++. .+|.+ +.+.++..+ ......+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHH
Confidence 3466889999999999999999999999999999874 322 22222 345566666 56778899999999
Q ss_pred HHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013129 99 LCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRF 177 (449)
Q Consensus 99 ~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 177 (449)
.++++.|+||+++.++..++...+....+++.++ +..+.+++..++..++ .+.++++++++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988777 5788888888876543 3567899999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 178 LQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
+++.||+|..++.+....++|++++++++...++|..|+++++.+++.+..++..++.+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888733347999999999999999998888777653
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.73 E-value=3.6e-14 Score=135.34 Aligned_cols=204 Identities=17% Similarity=0.165 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 013129 33 IESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHML 112 (449)
Q Consensus 33 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 112 (449)
+..|++.+...|..++...+++...+|+.+.+.+.+...+.+.++.++.++..-.+..++++...|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 58899999999999999999999999999999999999999999999999977799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHH
Q 013129 113 GIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLG----QPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (449)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (449)
++..+.++...++..+|..+ +..+++|+...+. .+++......+.+..++.+.++..+..++...+++.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999988 6899999997653 255667778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 188 AWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 188 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
+++.+++.++|+.+++.+... +|..|.++++.++.++.+.+.++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999777765 5888899999999989988888888776
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=4.8e-18 Score=141.74 Aligned_cols=160 Identities=25% Similarity=0.386 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 013129 44 PAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVL 123 (449)
Q Consensus 44 p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 123 (449)
|.++++++..+...+|+.+++++|++++++++++.++.++ ...+..|++++.++.++|++|++|+|+.++..+.+..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH-HHHHHH
Q 013129 124 FLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGL-LVNVLT 201 (449)
Q Consensus 124 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 201 (449)
...+++..++ +.+.+++..+++.|++..+.+.+|+++..+..++..+.....+++++.||++..+..+.++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999998874 88889999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 013129 202 SWL 204 (449)
Q Consensus 202 ~~~ 204 (449)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.72 E-value=2.7e-14 Score=141.24 Aligned_cols=201 Identities=12% Similarity=0.042 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
++..|++++++.|...+++...+...+|+.+++++ |++++|.|+.+.++.+.....+...+++...|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 46789999999999999999999999999999997 9999999999999998755556666778888988885 56778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (449)
+.++.+++........++|..+ +...+++++..+.+++ +..+...++++++...+..........+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 8899999999999888888877 5788899888776654 677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 190 VSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 190 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
.+.+..+++++..+.+... +|..|+++++.+++.+......++..|+
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888777766665543 5999999999999999888888777543
No 30
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.71 E-value=1.6e-15 Score=142.76 Aligned_cols=182 Identities=23% Similarity=0.250 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 013129 264 AAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQ 343 (449)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 343 (449)
|.+++++...+...+++.++++++ +.++++++++.++..+...+..+++++..|.++++.|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678888999999999999999987 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Q 013129 344 STLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLP 423 (449)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 423 (449)
...++++.++++.++++++..+++.|++..+.+.+++++++++.++.+++.....++++.||.+.....++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888889999999999999999999999999999999999999999874 88899
Q ss_pred HHHHHHH-hhc-ccc-hhhhhccccccc
Q 013129 424 LGFLIGW-VFK-LGV-GVTSAVPFSSVV 448 (449)
Q Consensus 424 ~~~~l~~-~~~-~~~-~~~~a~~~s~~~ 448 (449)
+.+++.+ .+| ++. ++++++.+++++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~ 185 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWL 185 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHH
Confidence 9998887 677 444 378888777643
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.71 E-value=8.6e-15 Score=141.47 Aligned_cols=201 Identities=7% Similarity=-0.029 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAG-HLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 109 (449)
.++..|++++++.|..++++...+....|+.+++ ++|++++|.|+.+.++.+.+...+..+++++.+|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 3567899999999999999999999999999997 579999999999999988646788999999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHH
Q 013129 110 HMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA 188 (449)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (449)
++.++..++........+++..+ +++++++++.++.+++ ++.+.++++++++..++...+......+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899998888888877776 5789999999888765 45578889999998888888777777777888998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 189 WVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
...+....+++++++++++. +|..|+++++.+++.+...+..+...++
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999886 5999999999999999998877666543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=6.7e-13 Score=119.17 Aligned_cols=247 Identities=16% Similarity=0.147 Sum_probs=176.6
Q ss_pred HHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH
Q 013129 54 TMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLP 132 (449)
Q Consensus 54 l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (449)
..+++...+++|+ |++++|.|+....+..++......|+.+.... ..++|+++.++..+.........+++...
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889996 99999999999999998555567777777544 22345556666666655554444433333
Q ss_pred HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013129 133 FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFG 212 (449)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 212 (449)
+ ...+...+ .+++ ...++....+..++........+.+++.+|.+...............+...+... +.+
T Consensus 77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 11111233 3322 2234556667778888899999999999999999999999988775444444433 347
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhH
Q 013129 213 VVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLA 292 (449)
Q Consensus 213 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (449)
..+..++..+++.+..+......+++ .+.++ +.+.. +.++.+.|..+.+.......+.+..+++.+. ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK---LRLSF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---cCCCc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 88888888888887776655533322 11111 11223 4799999999999999999999999999944 3889
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013129 293 VDALSVCMSINGWQM-MIPLAFLAATGVRVAN 323 (449)
Q Consensus 293 v~~~~i~~~i~~~~~-~~~~~i~~~~~~~~s~ 323 (449)
+|.|+++.++...+. .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.62 E-value=2.1e-13 Score=134.54 Aligned_cols=187 Identities=19% Similarity=0.259 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 109 (449)
.++..|+.++.+.|...+++...+.+.+|+.+++++ |++++|.|+.+.++... ...+...++....|..++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 478999999999999999999999999999999997 99999999988888888 8888899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHH
Q 013129 110 HMLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA 188 (449)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (449)
++.++..++.+......+++..+ +..+.+++...+.+++ +..+...++++++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999887 5788889998776665 33477889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHH
Q 013129 189 WVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDIS 223 (449)
Q Consensus 189 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~ 223 (449)
..+.++.++|.+++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999986 5889999888 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.24 E-value=2.1e-08 Score=98.16 Aligned_cols=405 Identities=10% Similarity=0.007 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 013129 39 WQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVG-FNFGLLLGMASALETLCGQAFGAKRYHMLGIYM 116 (449)
Q Consensus 39 ~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 116 (449)
.+.+.-.++.++...+.+++-+.++-|. +|+.+|..++=..+..- +....=-++..+.++.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 4566778899999999999888888775 99999988555554432 233444577777665433331112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHH--hHHH----HHHHc-CCChH---HHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHhc
Q 013129 117 QRSWIVLFLFCFLLLPFYV--FATP----LLKLL-GQPDD---VAELSGTVAVWMIPLHFSFAFQFPL----TRFLQCQL 182 (449)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~ 182 (449)
+.......+.++++..+.+ ...+ ...+. ...++ ..+.....+.+...+.+...+...+ +..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222233333332222211 0100 11111 11111 1112222333444444444444444 33333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-cCccc-----ch-hHHHHHHHHHHHHHHHHHHHHh-cccc-----ccccCCch
Q 013129 183 KNQVIAWVSLVGLLVNVLTSWLFVYV-LDFGV-----VG-AALALDISWWVLCFGLYGYAAF-GGCP-----LTWSGFST 249 (449)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~-----~g-~~~a~~i~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~ 249 (449)
|.+.-........+.+..+....... .+++. .+ +.++..+++............. ...+ ...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 44444444444444443332222111 11111 11 2344555554443322211111 1111 11111211
Q ss_pred ---hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013129 250 ---QAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGY--LKNATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVAN 323 (449)
Q Consensus 250 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~i~~~i~~~~~-~~~~~i~~~~~~~~s~ 323 (449)
.....-+++++.....+..++...+...-+.+++.. +.+ .++=|.|++++++.+++- .+...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111124789999999999999999999999988888 654 667789999999988876 6678889998888888
Q ss_pred hhcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhH
Q 013129 324 ELGAGNG---------KGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQP 394 (449)
Q Consensus 324 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 394 (449)
...+++. ++..+.....+|....+++.+...-...++.+..++.+++..-..+...++.++...++.++++
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765433 3455667777777777777777666677777888877655434457899999999999999999
Q ss_pred HHHHHHHhcCcchhhHHHHHH--HHHHHHHHHHHHHHHh-hcccchhhhhcccc
Q 013129 395 VLSGVAIGSGWQATVAYINLG--CYYIIGLPLGFLIGWV-FKLGVGVTSAVPFS 445 (449)
Q Consensus 395 ~~~~~l~~~g~~~~~~~~~~~--~~~~~~i~~~~~l~~~-~~~~~~~~~a~~~s 445 (449)
+..+..++..+.+.....+-. ...++.+..++++... +|..| ..+|-++.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~G-lI~AN~iN 455 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVG-LILANCIN 455 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-HHHHHHHH
Confidence 999999999888776544432 1235666788888885 45444 66665543
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=3.5e-06 Score=77.57 Aligned_cols=404 Identities=13% Similarity=0.011 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCccch
Q 013129 34 ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVG-FNFGLLLGMASALETLCGQAFGAKRYHM 111 (449)
Q Consensus 34 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~is~~~g~~~~~~ 111 (449)
....-.+.+.-.+..++...+.++.-+.++-|+ +++.+|..++-..+.+- +....--++.-+..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 444556667777888888888888766666664 99999998887766663 12222234444433322211 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 013129 112 LGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDD-VAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (449)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (449)
..+..+.+..+..+..+++.-+++....-. |+. ..+.-...+.+...+.....+...+.-..|..-+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~-----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLGFLSSS-----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhcc-----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433222111111 111 01111122333344444444444455555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHh-c-CcccchhHHHHHHHHHHHHHHHHHHHHhc-c-cccc---------ccCCchh--hhhch
Q 013129 191 SLVGLLVNVLTSWLFVYV-L-DFGVVGAALALDISWWVLCFGLYGYAAFG-G-CPLT---------WSGFSTQ--AFSGL 255 (449)
Q Consensus 191 ~~~~~~~~i~l~~~li~~-~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~-~~~~---------~~~~~~~--~~~~~ 255 (449)
.-+..+++.+..+..... . ++++.--++|.........+...++..+. + .+.. .++.... ....-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 666666663433333332 1 12333344444443332223222222222 2 0100 0111111 01123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHH
Q 013129 256 WEYTKLSVAAGVMLCLENWYYRILILMTGYLKN-ATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVANELGAGNGKGA 333 (449)
Q Consensus 256 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~i~~~i~~~~~-~~~~~i~~~~~~~~s~~~g~~~~~~~ 333 (449)
++..|.-....-+.+...+...-+..+++.... .-.+=|.|.+.++..++.- .+...+-.......++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 567777777777777777777777777765432 0113458999999977766 66888999999999999888887777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhH
Q 013129 334 GFATI---VSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVA 410 (449)
Q Consensus 334 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (449)
|+... ..++....+++..+..-.-.++.+..++++++..-..+...+++++...++.+++++..+..++.++.+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 76554 444555555544444445566677787776554334467899999999999999999999999998877664
Q ss_pred HHHHH--HHHHHHHHHHHHHHHhhcccchhhhhcccc
Q 013129 411 YINLG--CYYIIGLPLGFLIGWVFKLGVGVTSAVPFS 445 (449)
Q Consensus 411 ~~~~~--~~~~~~i~~~~~l~~~~~~~~~~~~a~~~s 445 (449)
..+-. ..-++.+..++++...+|..| ...|-++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~~~~~G-lIlANiiN 434 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWFGLVG-LILANIIN 434 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHhchhH-HHHHHHHH
Confidence 43321 123666779999999998866 66655543
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.04 E-value=1.4e-06 Score=76.64 Aligned_cols=313 Identities=14% Similarity=0.067 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--Ch-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 013129 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL--GD-VELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKR 108 (449)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~--g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~ 108 (449)
...++.+.++-+|..++.++..+...+.+.-++|- .+ +.+++|+++..+.-+ ...+...+.+....+ ++++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~-----V~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVF-----VNSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHH-----hcch
Confidence 34788999999999999999999999988888873 33 458999999999988 666666666664443 3443
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HH-HhHHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhh
Q 013129 109 YHMLGIYMQRSWIVLFLFCFLLLP-FY-VFATPLL-KLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQ 185 (449)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (449)
+++ ++.+......+.+...+..+ .+ .....++ ..++.++++.+.+...+.++...-++.++...+++++--++++.
T Consensus 81 rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 332 22222222222222222222 23 2333333 66788999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccc-chhH---HHHHHHHHHHH-HHHHHHHHh-ccccccccCCchhhhhchHHHH
Q 013129 186 VIAWVSLVGLLVNVLTSWLFVYVLDFGV-VGAA---LALDISWWVLC-FGLYGYAAF-GGCPLTWSGFSTQAFSGLWEYT 259 (449)
Q Consensus 186 ~~~~~~~~~~~~~i~l~~~li~~~~~g~-~g~~---~a~~i~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 259 (449)
.....++...+..+++...++.. ++.. .... ++...+..+-+ .+.+-+.+. ++...........+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77777666666555555455522 1111 1111 22222222211 111222211 1222222222233335588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHH-
Q 013129 260 KLSVAAGVMLCLENWYYRILILMTGY-LKNA---TLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAG- 334 (449)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~- 334 (449)
++.+|.+.......+...+.+.++++ +++. +++++...+.+...-..+...+-+ .+..|..-+ +++.++.+
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~---~~~~~~~~~ 314 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDK---NNPQNKLRN 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhc---cCccccccc
Confidence 99999999999999999998888888 5542 356666555555544444333322 233444322 22333332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHH
Q 013129 335 -------FATIVSVAQSTLIGLILCVIIM 356 (449)
Q Consensus 335 -------~~~~~~~~~~~~~~~~~~~~~~ 356 (449)
..+++....++.+++..+..++
T Consensus 315 ~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 315 CGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666677777777776666554
No 37
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.02 E-value=1.7e-08 Score=97.49 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=169.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 013129 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGW-QMMIPLAFLAATGVRVANELGAGNG 330 (449)
Q Consensus 252 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~ 330 (449)
..+.|++.+++.|..+....+.....++...+++++ +.++++.+++...... .+.+..++..+..|..+|.+|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 466799999999999999999999999999999998 5588899998888776 5567889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhH
Q 013129 331 KGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVA 410 (449)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (449)
+......+++.........|.+.... ..+++...+..|+++...+..+.++.....+-..........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999888876655 55999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-hhhhhcccc
Q 013129 411 YINLGCYYIIGLPLGFLIGWVFKLGV-GVTSAVPFS 445 (449)
Q Consensus 411 ~~~~~~~~~~~i~~~~~l~~~~~~~~-~~~~a~~~s 445 (449)
++...+ .++++++++++.+..|++. +...+..++
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s 215 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVAS 215 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHH
Confidence 999987 5999999999999999886 355555444
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.68 E-value=5.1e-06 Score=81.69 Aligned_cols=203 Identities=10% Similarity=0.001 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc-
Q 013129 35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGH--L-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH- 110 (449)
Q Consensus 35 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~--~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~- 110 (449)
-++.++.+.....+.+...+.+--|++++.. + +.++.|.|+++.++-+++.=.+...+..+.....++...+++.+
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4788888999999999999999999999999 7 99999999999999998777788888888888888877654332
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 013129 111 --------MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQ 181 (449)
Q Consensus 111 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 181 (449)
+..+.....+.+...+++++.. .-..++.++.+++++.-..+.+.+.+++++..+++.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3445566666666667766555 4667777777776554334456788999999999999999999999998
Q ss_pred chhhHHHHHHHHH---HHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 182 LKNQVIAWVSLVG---LLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 182 ~~~~~~~~~~~~~---~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
...+.....+-.. .++.+..++++... ++|..|..+|..+.-.+-...+..+++|.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777666555544 45556777888876 78999999999999888888888888765
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.50 E-value=1.7e-05 Score=64.42 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=73.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 013129 158 AVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAF 237 (449)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 237 (449)
+++++++.++..+....++.+++.||+|.....+..+.++|+++++.+++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999875 699999999999999999888888876
Q ss_pred c
Q 013129 238 G 238 (449)
Q Consensus 238 ~ 238 (449)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.0011 Score=61.69 Aligned_cols=201 Identities=8% Similarity=0.010 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 013129 36 KKLWQIVGPAIFSRISSYTMNIITQAFAGHL---GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHML 112 (449)
Q Consensus 36 ~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~---g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 112 (449)
++..+......-+.+...+.+--|.++++.+ +-++.|.|....++-+++.=.+...+.-....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 4556666666777788888888899988853 6678999999988888877777778888888888888777776666
Q ss_pred HH---HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHH
Q 013129 113 GI---YMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA 188 (449)
Q Consensus 113 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (449)
++ +....+.....++++++. ....+...+.++++++-....+...+++++..+++..++.+..++..+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 55 445555555566655544 45666667777776553344556889999999999999999999999988777665
Q ss_pred HHHHH---HHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 189 WVSLV---GLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 189 ~~~~~---~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
..+-. ..+..++++++++.++ |..|..+|..+...+--....+++++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 3455678889998875 779988888888666665555555544
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.41 E-value=0.02 Score=50.96 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=80.1
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013129 279 LILMTGYLKNATLAVDALSVCMSINGWQMMI-PLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMI 357 (449)
Q Consensus 279 ~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (449)
...+...++ +++.|.|+....+..+...+ ..++.+...- ..++|+++.++..+..............++
T Consensus 8 ~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (251)
T PF13440_consen 8 LILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL--- 77 (251)
T ss_pred HHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344445555 78899999999998888876 3444433322 233566666666666665544444443333
Q ss_pred hhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHH
Q 013129 358 LHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCY 417 (449)
Q Consensus 358 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 417 (449)
...+...+ ++++ ...++....+..++..........+++.+|.+.....+....
T Consensus 78 -~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 131 (251)
T PF13440_consen 78 -AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS 131 (251)
T ss_pred -HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 23333333 3332 344566677777888999999999999999999998888875
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.38 E-value=0.067 Score=47.93 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=108.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 013129 253 SGLWEYTKLSVAAGVMLCLENWYYRILILMTGY-LKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGK 331 (449)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~ 331 (449)
..+++++++-+|..++..+..+..++.+.-+.. -.+..+.+|.|+++..+.-+...+...+.+.....+.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 457899999999999999999999988776655 33435669999999999999998888887776666532 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-HhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCc
Q 013129 332 GAGFATIVSVAQSTLIGLILCVI-----IMILHD-KVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGW 405 (449)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 405 (449)
-++..... .+.+...... .--++. .+.+++.-|+++.+.+...+.++.+..+++++.....+++.=.++
T Consensus 83 -rr~~vl~~----~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 83 -RRKAVLCM----AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred -hHHHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 12222222 2222222222 112222 233456678899999999999999999999999999999886677
Q ss_pred chhhHHHHHHH
Q 013129 406 QATVAYINLGC 416 (449)
Q Consensus 406 ~~~~~~~~~~~ 416 (449)
+......++..
T Consensus 158 s~iV~~aSI~~ 168 (345)
T PF07260_consen 158 SWIVGSASIAD 168 (345)
T ss_pred eeEeehHHHHH
Confidence 77766666654
No 43
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.37 E-value=0.025 Score=50.90 Aligned_cols=160 Identities=18% Similarity=0.080 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 013129 260 KLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMI-PLAFLAATGVRVANELGAGNGKGAGFATI 338 (449)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~ 338 (449)
|.+......+....+...+...++.+..+ +++.|.|+....+..+...+ ..+++++..-..+++..+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 44445555555555555555444444432 88999999999999888876 677888887777765432 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHH
Q 013129 339 VSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYY 418 (449)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 418 (449)
......... ...+. ....+...+..++ .+ ...........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~-~~i~~----~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIF-SLIFL----LILLIASFFGNPS--LS--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHH-HHHHH----HHHHHHHHcCCch--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333222222 22222 2222222333332 11 11222222222577888889999999999999888888775
Q ss_pred HHHHHHHHHHHHhh
Q 013129 419 IIGLPLGFLIGWVF 432 (449)
Q Consensus 419 ~~~i~~~~~l~~~~ 432 (449)
+..+.+.+.+....
T Consensus 150 ~~~~~~~~~~~~~~ 163 (273)
T PF01943_consen 150 LLSLLLILLLLFLG 163 (273)
T ss_pred HHHHHHHHHHHHHh
Confidence 45454444444433
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.34 E-value=0.12 Score=47.32 Aligned_cols=319 Identities=13% Similarity=0.075 Sum_probs=178.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhH
Q 013129 85 NFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPL 164 (449)
Q Consensus 85 ~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (449)
..++..|+....++++|...=+||.+++.....-+..+....+..+.. ++-..+++... .|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si-----~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSI-----VYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhH-----HHHHHHHHH
Confidence 566778888888888888877777777655444433333333322221 11111222211 111223344
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 013129 165 HFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTW 244 (449)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 244 (449)
+...+...+...++.+.+|.+.....-.++..+.+.+...+-. .+..|..++..++..+..+....++.|.-+..+.
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 4555666677889999999999999999998888887776654 4899999999999988888888887765222222
Q ss_pred cCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHHHHHHHHHHH-----H
Q 013129 245 SGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVD------ALSVCMSINGWQMMIPLA-----F 313 (449)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~~i~~~i~~~~~~~~~~-----i 313 (449)
..++..+ ..+--....+.....++...+++.+.-..++++.-.+ .|.++.-.......|..+ +
T Consensus 218 i~FdFL~------~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDFLL------YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceehhh------hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 2222111 1111122334444556666666666555442222111 244444444444333322 3
Q ss_pred HHHHHHHHHHhhcC----CC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHH
Q 013129 314 LAATGVRVANELGA----GN-------GKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFL 382 (449)
Q Consensus 314 ~~~~~~~~s~~~g~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 382 (449)
.+...+.--+.+.+ +. .++.....++...-.+-+-...++.+.++++.+...+.-++ ...+...+
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHH
Confidence 33444433322221 11 12222333344444445566778888899999988776543 24556666
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 013129 383 LAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIG 429 (449)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 429 (449)
-.++......-..+-++..-..+-|..+-.+..- .+.+-.+.++..
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 6666666666666666666677777666555443 344444444443
No 45
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.27 E-value=0.00057 Score=55.40 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccccc
Q 013129 380 SFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSV 447 (449)
Q Consensus 380 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~a~~~s~~ 447 (449)
+++++++.++.+...+.+.++++.||+|..++.+..+ .++++++.+++.+.+|..| +.+|+.+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~~G~~G-aa~a~~i~~~ 67 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPRFGIYG-AAIATAISEI 67 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 6788999999999999999999999999999999987 5999999999999999999 8888777664
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=73.95 E-value=21 Score=25.35 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 013129 310 PLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLIL 351 (449)
Q Consensus 310 ~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (449)
..-++-.....+.+.+.+||++++++..+++.+++.+-....
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444555677788889999999999999998876554443
No 47
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=46.58 E-value=2.1e+02 Score=25.41 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=53.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcch
Q 013129 328 GNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQA 407 (449)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 407 (449)
+..+.+++..-.+..++....+.-++..+.+++ ..++.++.+.+..+. ...+..-..++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg-~~fW~~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGG-WGFWFISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCC-eehHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345566666666666777777777777776765 555665554444333 44455555566666665555567777777
Q ss_pred hhHHHHHHHH
Q 013129 408 TVAYINLGCY 417 (449)
Q Consensus 408 ~~~~~~~~~~ 417 (449)
.|.+-++..+
T Consensus 186 LPar~SFY~Y 195 (261)
T PF10160_consen 186 LPARPSFYRY 195 (261)
T ss_pred CCCCccHHHH
Confidence 7766666554
No 48
>COG4267 Predicted membrane protein [Function unknown]
Probab=44.20 E-value=2.9e+02 Score=26.28 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHH
Q 013129 308 MIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITI 387 (449)
Q Consensus 308 ~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 387 (449)
.++.+++....-.+|+..=++|.+++.....-...+....+..++..++ +.++| + ...+-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~--si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--Y--SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--h--hHHHHHHHHHHH
Confidence 3456666666666777776777777777766666665555554443111 22222 2 222233445556
Q ss_pred HHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 013129 388 LLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIG 429 (449)
Q Consensus 388 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 429 (449)
+..+...+....+.+++|-|.....-.++ .++.+.++.++-
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~ 182 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL 182 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 66777888889999999999888777776 466665555543
No 49
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=34.76 E-value=3.9e+02 Score=25.02 Aligned_cols=76 Identities=13% Similarity=0.023 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cc--cccccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH
Q 013129 218 LALDISWWVLCFGLYGYAAFG-GC--PLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVD 294 (449)
Q Consensus 218 ~a~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 294 (449)
-+..+++++-.+++.....++ +. +...+..++..+...+|.+|.++|..+-. +.+++..+-.++++ -+
T Consensus 49 t~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYa----lqNnl~yval~~ld-----aa 119 (345)
T KOG2234|consen 49 TAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYA----LQNNLQYVALSNLD-----AA 119 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHH----HhhhHHHHHHhcCC-----ch
Confidence 344555666555555555444 22 22233444555566779999999998743 33344445555543 22
Q ss_pred HHHHHHHH
Q 013129 295 ALSVCMSI 302 (449)
Q Consensus 295 ~~~i~~~i 302 (449)
.|++.+|+
T Consensus 120 tyqVt~ql 127 (345)
T KOG2234|consen 120 TYQVTYQL 127 (345)
T ss_pred hhhhhhhH
Confidence 55555554
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.25 E-value=1.8e+02 Score=25.21 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Q 013129 110 HMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQ 146 (449)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (449)
+...+....++...+++-.++++++....++..+++.
T Consensus 144 ~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 3333344444444443334444456666777776664
No 51
>PF14184 YrvL: Regulatory protein YrvL
Probab=29.18 E-value=2.9e+02 Score=21.79 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 013129 117 QRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDD-VAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGL 195 (449)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 195 (449)
.......+...++++...+....+++++|.+-+ ......-.+.....+.++..+...+...+.-.+-++. .......
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~--~~~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRR--LFILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchH--HHHHHHH
Confidence 334444445555555556667777788876432 2222222333445566666666555554444422222 2223345
Q ss_pred HHHHHHHHHHHHhcCcccchhHH
Q 013129 196 LVNVLTSWLFVYVLDFGVVGAAL 218 (449)
Q Consensus 196 ~~~i~l~~~li~~~~~g~~g~~~ 218 (449)
.+...+++..++..+.=+.+..+
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceee
Confidence 66777777777754433333333
No 52
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=27.09 E-value=2.9e+02 Score=24.84 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHH--HHHHHHHHHHHHHHHHHHHHhHH----HHHHhhh
Q 013129 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAI--SIANTVIVGFNFGLLLGMASALE----TLCGQAF 104 (449)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~-g~~~~~~~--~~~~~~~~~~~~~~~~gl~~~~~----~~is~~~ 104 (449)
...+|--+-.+.|.+...+=+.++.......++.. |..++|.- .-..+ ..+ ...+..|++.... -.++|.+
T Consensus 199 Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~-ldi-g~g~~aGlaIVilAIiLDRitq~~ 276 (290)
T COG4176 199 QKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQR-LDI-GLGFEAGLAIVILAIILDRLTQAF 276 (290)
T ss_pred HHHHHhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH-hhh-HHHHhhhHHHHHHHHHHHHHHHHh
Confidence 34666677789999999999999999999888886 87777621 11111 222 3334444444332 3467777
Q ss_pred cCCccchHH
Q 013129 105 GAKRYHMLG 113 (449)
Q Consensus 105 g~~~~~~~~ 113 (449)
+++++++.+
T Consensus 277 ~~~~~~~~~ 285 (290)
T COG4176 277 GRKAKSRHR 285 (290)
T ss_pred ccccccccc
Confidence 766544433
No 53
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=25.45 E-value=7.5e+02 Score=25.41 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHH
Q 013129 345 TLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINL 414 (449)
Q Consensus 345 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 414 (449)
++.+....-...+.+..+..+|++|+...............+..+.+ .++..++.-.++.|+.+....
T Consensus 320 fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~--~i~g~l~~~ir~~Kw~li~~~ 387 (599)
T PF06609_consen 320 FISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGA--VILGLLFSKIRHIKWQLIFGS 387 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHH--HHHHHHHHHccchhHHHHHHH
Confidence 33333333444566677777887775322222222223333332222 234556666788888865554
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.54 E-value=1.1e+02 Score=23.75 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=4.6
Q ss_pred chhHHHHHHH
Q 013129 214 VGAALALDIS 223 (449)
Q Consensus 214 ~g~~~a~~i~ 223 (449)
.|+.++.+++
T Consensus 67 ~~Ii~gv~aG 76 (122)
T PF01102_consen 67 IGIIFGVMAG 76 (122)
T ss_dssp HHHHHHHHHH
T ss_pred eehhHHHHHH
Confidence 3444444444
No 55
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.20 E-value=4.9e+02 Score=22.14 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHH
Q 013129 318 GVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVD 377 (449)
Q Consensus 318 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 377 (449)
.|.+-...++.+.++.|+..++...... .+.+++.+.++.+.+.|+-+-+....+.
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAG 76 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISG 76 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444455666667777776655544 4456778889999999876654455443
Done!