Query 013129
Match_columns 449
No_of_seqs 261 out of 1841
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.9E-48 9.8E-53 379.5 37.1 417 28-448 4-434 (460)
2 3mkt_A Multi antimicrobial ext 99.9 1.6E-20 5.6E-25 182.9 21.3 207 31-238 233-446 (460)
3 3o7q_A L-fucose-proton symport 25.0 3.8E+02 0.013 24.1 32.3 43 36-78 26-70 (438)
4 2k1k_A Ephrin type-A receptor 23.5 79 0.0027 17.8 2.8 11 214-224 14-24 (38)
5 2jwa_A Receptor tyrosine-prote 18.3 1.6E+02 0.0055 17.2 3.5 10 229-238 29-38 (44)
6 2ks1_B Epidermal growth factor 15.3 1.9E+02 0.0067 16.9 4.4 6 232-237 32-37 (44)
7 4hkr_A Calcium release-activat 12.4 5.7E+02 0.02 20.7 13.5 80 290-370 57-144 (214)
8 4hkr_A Calcium release-activat 9.8 7.1E+02 0.024 20.2 16.4 81 67-148 56-144 (214)
9 3hd7_B Syntaxin-1A; membrane p 7.1 4.2E+02 0.014 18.9 3.5 22 329-350 71-92 (109)
10 3hd7_A Vesicle-associated memb 5.9 5.5E+02 0.019 17.5 3.4 37 322-358 49-85 (91)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.9e-48 Score=379.54 Aligned_cols=417 Identities=20% Similarity=0.333 Sum_probs=383.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 013129 28 TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAK 107 (449)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~ 107 (449)
+...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++..+ ...+..|++++..+.+++++|++
T Consensus 4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~ 82 (460)
T 3mkt_A 4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG 82 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567789999999999999999999999999999999999999999999999877 67788999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHH
Q 013129 108 RYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (449)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (449)
|+++.++..++++.+....+++..+++.+.++++.+++.+++..+.+..|+++..++.++..+.....+.+|+.||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999887777788888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-c---CcccchhHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCchhhhhchHHHHH
Q 013129 188 AWVSLVGLLVNVLTSWLFVYV-L---DFGVVGAALALDISWWVLCFGLYGYAAFGGCPLT---WSGFSTQAFSGLWEYTK 260 (449)
Q Consensus 188 ~~~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 260 (449)
+..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++.+|++...+ ++++.+.+++..|++++
T Consensus 163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence 999999999999999999975 4 6899999999999999999988888876632211 12233445677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 013129 261 LSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVS 340 (449)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~ 340 (449)
+++|.+++++...+...+++.+++.++ +.++++|+++.++.++...+..+++++..|.+++++|++|.|+.++..+++
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~ 320 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 013129 341 VAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYII 420 (449)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 420 (449)
.++...++++.++++.++++++..+|++|+++++.+.+++++++++.++.+++.+..+++++.||+|.+++.++.+.|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 400 (460)
T 3mkt_A 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVL 400 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHh-------hcccchhhhhccccccc
Q 013129 421 GLPLGFLIGWV-------FKLGVGVTSAVPFSSVV 448 (449)
Q Consensus 421 ~i~~~~~l~~~-------~~~~~~~~~a~~~s~~~ 448 (449)
++|+.+++.+. +|..| +|+|+.+++++
T Consensus 401 ~i~l~~~l~~~~~~~~~~~G~~G-~~~a~~~~~~~ 434 (460)
T 3mkt_A 401 GLPTGYILGMTNWLTEQPLGAKG-FWLGFIIGLSA 434 (460)
T ss_dssp HHHHHHHHHHHHTSSCCSSHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccccCchh-HHHHHHHHHHH
Confidence 99999999998 66666 99999887653
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.86 E-value=1.6e-20 Score=182.88 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (449)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 110 (449)
.++..|++++.+.|.+++++...+...+|+.+++++|++++|+|+++.++.++ ...+..+++++.+|.+++++|++|++
T Consensus 233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34577999999999999999999999999999999999999999999999999 77889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129 111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (449)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (449)
+.++..+.+.......+++.++ +..+.+++..++..|++..+.+..+++++++..++.++.....+.+++.||++.++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 391 (460)
T 3mkt_A 312 GAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH 391 (460)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 9999999999999999988877 588899999999888888889999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHh----cC-cccchhHHHHHHHHHHHHHHHHHHHHhc
Q 013129 190 VSLVGL-LVNVLTSWLFVYV----LD-FGVVGAALALDISWWVLCFGLYGYAAFG 238 (449)
Q Consensus 190 ~~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 238 (449)
.+.++. ++++++++++.+. .+ +|..|+++++.+++.+..++..+.++|+
T Consensus 392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 9999999999987 56 8999999999999999887776655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=25.04 E-value=3.8e+02 Score=24.07 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChhhHHHHHHHH
Q 013129 36 KKLWQIVGPAIFSRISSYTMNIITQAFAGHL--GDVELAAISIAN 78 (449)
Q Consensus 36 ~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~--g~~~~~~~~~~~ 78 (449)
+.+.....-.++..............+..++ ++.+.+......
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 70 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAF 70 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344444444444444444444444455555 455555444333
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.47 E-value=79 Score=17.81 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=4.7
Q ss_pred chhHHHHHHHH
Q 013129 214 VGAALALDISW 224 (449)
Q Consensus 214 ~g~~~a~~i~~ 224 (449)
.|+.++.+++-
T Consensus 14 AGiVvG~v~gv 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeehHHHHHH
Confidence 34444444443
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.33 E-value=1.6e+02 Score=17.23 Aligned_cols=10 Identities=0% Similarity=-0.499 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 013129 229 FGLYGYAAFG 238 (449)
Q Consensus 229 ~~~~~~~~~~ 238 (449)
+....+++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334455554
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.32 E-value=1.9e+02 Score=16.85 Aligned_cols=6 Identities=0% Similarity=-0.430 Sum_probs=2.4
Q ss_pred HHHHHh
Q 013129 232 YGYAAF 237 (449)
Q Consensus 232 ~~~~~~ 237 (449)
+++.+|
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 334443
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=12.36 E-value=5.7e+02 Score=20.73 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 013129 290 TLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELG--------AGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDK 361 (449)
Q Consensus 290 ~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (449)
+.-+.+|++...+.-....++.-+++-..|.+...-+ +.-.++.+..+...-..+..++++..++-....-
T Consensus 57 ~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~- 135 (214)
T 4hkr_A 57 PGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC- 135 (214)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3456789999998888888888888888887654422 2233556666666666665555555444444433
Q ss_pred hhhhcCCch
Q 013129 362 VALIFTSSN 370 (449)
Q Consensus 362 i~~l~~~~~ 370 (449)
+++++..++
T Consensus 136 WVKF~~~~~ 144 (214)
T 4hkr_A 136 WVKFYDLSR 144 (214)
T ss_dssp HHHHTTTCH
T ss_pred eEEeecCCc
Confidence 335555443
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=9.76 E-value=7.1e+02 Score=20.19 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc--------CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013129 67 GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFG--------AKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFAT 138 (449)
Q Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (449)
.+.-+..|+....+.-. ...+..-+++-+.|.+-..-+ +.-.++.+.+.-....++..+|++..+.-+..-
T Consensus 56 p~~LLi~fav~Ttllv~-vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVA-VHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHH-HHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457788888887776 566666666666665544322 223467788888888888888877766555555
Q ss_pred HHHHHcCCCh
Q 013129 139 PLLKLLGQPD 148 (449)
Q Consensus 139 ~~~~~~~~~~ 148 (449)
-+++++..++
T Consensus 135 ~WVKF~~~~~ 144 (214)
T 4hkr_A 135 CWVKFYDLSR 144 (214)
T ss_dssp HHHHHTTTCH
T ss_pred heEEeecCCc
Confidence 6677776654
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=7.08 E-value=4.2e+02 Score=18.88 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 013129 329 NGKGAGFATIVSVAQSTLIGLI 350 (449)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~ 350 (449)
+.+++.+.-++.-+....+.++
T Consensus 71 eL~kA~~yqk~~rkk~~i~l~~ 92 (109)
T 3hd7_B 71 DTKKAVKYQSKARRKKIMIIIC 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcceehHHH
Confidence 3344445555555544444433
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=5.88 E-value=5.5e+02 Score=17.53 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013129 322 ANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMIL 358 (449)
Q Consensus 322 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
|+.+.++-.+--++.-++-+|+.+++++++.+++++.
T Consensus 49 s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 49 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!