Query 013129
Match_columns 449
No_of_seqs 261 out of 1841
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 04:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013129.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013129hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 20.3 2.2E+02 0.016 23.4 20.2 25 211-235 407-431 (447)
2 d1nkzb_ f.3.1.1 (B:) Light-har 12.0 1.1E+02 0.0079 16.0 4.2 33 329-361 7-39 (41)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.4 5.8E+02 0.042 20.3 37.7 19 310-328 297-315 (447)
4 d1ijdb_ f.3.1.1 (B:) Light-har 5.8 2.2E+02 0.016 14.7 3.9 30 329-358 8-37 (40)
5 d1m56d_ f.23.8.1 (D:) Bacteria 4.0 3.3E+02 0.024 14.3 5.1 34 325-358 4-37 (42)
6 d1qled_ f.23.8.1 (D:) Bacteria 3.4 3.8E+02 0.028 14.1 5.1 34 325-358 5-38 (43)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 2.9 2.5E+02 0.019 17.5 1.4 18 255-272 61-78 (91)
8 d1lghb_ f.3.1.1 (B:) Light-har 2.7 4.8E+02 0.035 13.8 3.8 28 331-358 12-39 (43)
9 d2yvxa3 f.57.1.1 (A:276-448) M 2.7 8.9E+02 0.065 17.0 7.4 91 50-140 15-105 (173)
10 d1j1va_ a.4.12.2 (A:) Chromoso 2.2 6.1E+02 0.044 15.6 2.7 37 304-340 35-71 (94)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.28 E-value=2.2e+02 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=11.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 013129 211 FGVVGAALALDISWWVLCFGLYGYA 235 (449)
Q Consensus 211 ~g~~g~~~a~~i~~~~~~~~~~~~~ 235 (449)
.|..+..+.......+..++.....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555444444444444444333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=12.00 E-value=1.1e+02 Score=15.97 Aligned_cols=33 Identities=6% Similarity=-0.114 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 013129 329 NGKGAGFATIVSVAQSTLIGLILCVIIMILHDK 361 (449)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (449)
+-|+..+....+.+....+.+..=++.+...||
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 457888888888888888877776666666554
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.45 E-value=5.8e+02 Score=20.28 Aligned_cols=19 Identities=5% Similarity=-0.228 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 013129 310 PLAFLAATGVRVANELGAG 328 (449)
Q Consensus 310 ~~~i~~~~~~~~s~~~g~~ 328 (449)
...++......+++..+++
T Consensus 297 ~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTT
T ss_pred hhhhhhhhhhhhhhhcccc
Confidence 3444445556666666544
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.77 E-value=2.2e+02 Score=14.65 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013129 329 NGKGAGFATIVSVAQSTLIGLILCVIIMIL 358 (449)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
+-|++.+.+..+.+....+.+..=++.+..
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~ 37 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Confidence 457788888888888777766655554443
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.95 E-value=3.3e+02 Score=14.28 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=20.2
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013129 325 LGAGNGKGAGFATIVSVAQSTLIGLILCVIIMIL 358 (449)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
.|.-|.+.-+|.+.-.+++.....+.+.++++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655554444443
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.43 E-value=3.8e+02 Score=14.12 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=19.6
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013129 325 LGAGNGKGAGFATIVSVAQSTLIGLILCVIIMIL 358 (449)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
.|.-|.+.-+|.+.--+++.....+.+.++++++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555554444443
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.94 E-value=2.5e+02 Score=17.51 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 013129 255 LWEYTKLSVAAGVMLCLE 272 (449)
Q Consensus 255 ~~~~~~~~~p~~~~~~~~ 272 (449)
..|+.-..+|..+-..+.
T Consensus 61 ~lEi~WtiIP~iil~~ia 78 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFLA 78 (91)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHH
Confidence 348888888987754443
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.66 E-value=4.8e+02 Score=13.75 Aligned_cols=28 Identities=4% Similarity=0.043 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013129 331 KGAGFATIVSVAQSTLIGLILCVIIMIL 358 (449)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
++..+.+..++..-..+.++.=++.+.-
T Consensus 12 ~EfH~~~~~g~~~F~~iAvvAHiLvw~w 39 (43)
T d1lghb_ 12 IAVHDQFKTTFSAFIILAAVAHVLVWVW 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555544444444333
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.66 E-value=8.9e+02 Score=16.97 Aligned_cols=91 Identities=16% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHH
Q 013129 50 ISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFL 129 (449)
Q Consensus 50 ~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (449)
+...+...+...+++++.+.--....++.-+..+....=..|-.+.....-+-+.|+-+.++.++..++=+..++..+..
T Consensus 15 ~i~l~~~~~~a~ii~~Fe~~l~~~~~La~fiPli~~~gGN~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~ 94 (173)
T d2yvxa3 15 VILILTGMVTSSILQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLT 94 (173)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTTTTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHH
Q 013129 130 LLPFYVFATPL 140 (449)
Q Consensus 130 ~~~~~~~~~~~ 140 (449)
+.++......+
T Consensus 95 l~~i~~~~~~~ 105 (173)
T d2yvxa3 95 LSFLLVGKVYW 105 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
No 10
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.19 E-value=6.1e+02 Score=15.58 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 013129 304 GWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVS 340 (449)
Q Consensus 304 ~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~ 340 (449)
.+.+.+..=......+.+++.+|.+|+.-+-+..++.
T Consensus 35 ~va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 35 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Done!