BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013130
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/422 (40%), Positives = 225/422 (53%), Gaps = 38/422 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE+ +++ +R E D L L P +PR + H+ +I ++ Q+I
Sbjct: 73 KIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKG 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV + GDV F V P YG LS Q L+ +AG RV V KRNP DF LWK +K GEP
Sbjct: 133 HAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQS A V+
Sbjct: 193 SWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMH+G V + EKMSKSLGNFFT+R + + Y +R+FL+S HYRS LNYS L A
Sbjct: 253 YWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y L+ + ++P AR F M DD NT +
Sbjct: 313 RAALERLYTALRGTDKTVAPAGGEAFEAR---------------FIEAMDDDFNTPEAYS 357
Query: 301 GAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRILGLL--PPGAYSEV 358
F A +N L ++ LRK+ +LGLL P A+ +
Sbjct: 358 VLFDMA-----REVNRLKAEDMAAAN-AMASHLRKLSA-------VLGLLEQEPEAFLQS 404
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
Q D + E LI++R ARK KD++ +D R L GI L D + T
Sbjct: 405 GAQADDSEVAEIE-------ALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTT 457
Query: 419 WR 420
WR
Sbjct: 458 WR 459
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 167/420 (39%), Positives = 229/420 (54%), Gaps = 36/420 (8%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RA + E+P +L+ R+ Q D L+ L P +PR + ++ +I +I ++++N
Sbjct: 76 KIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQ 135
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY + GDVFF V + +YG+LS + L+ +AG RV V KR+P DF LWK AK GEP
Sbjct: 136 YAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEP 195
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
WDSPWG GRPGWHIECSA S+ L FDIHGGG+DL FPHHENEIAQS A + V
Sbjct: 196 KWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVK 255
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
W H G + N EK SKSLGN +IR+ + LR+FL+S HYR+PL+YS L++
Sbjct: 256 LWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENG 315
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ Y L+ P H KT+ D F+ DD NT
Sbjct: 316 RLALERFYLALRGL-----PVVNHEKTSSYT-----------DRFYEAXDDDFNTPIAFA 359
Query: 301 GAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F+ ++ IN + + IE + E+K + I GLL YS +
Sbjct: 360 LLFE-XVREINRFRDN-----------NQIEKAAVLAAELKCLGNIFGLL---QYSP--E 402
Query: 361 QLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
Q A K A++ E + +LI++R AR KD+ +DQIR LT G+A+ D T WR
Sbjct: 403 QFLQGAKKEADVQE--IKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWR 460
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 193/430 (44%), Gaps = 50/430 (11%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
++ + A + G +S + + + D L + P S H+ + +++ +
Sbjct: 103 KVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKK 162
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRL-ENNRAGERVAVDSRKRNPADFALW---KAAKA 117
Y G+V+F +YG ++G L + + RV VD KRN DF LW K
Sbjct: 163 ITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKD 222
Query: 118 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDS 177
E WDSPWG G P WH+EC+AM+ Y DIH GG+D I HH NEIA +
Sbjct: 223 QEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNKK 282
Query: 178 NVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQ 236
++H + + KMSKS GNF T++ + ++ + PL R+ +++HYR+ L +S+
Sbjct: 283 WCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDN 342
Query: 237 LDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCIN-------KLRDEFHARM 289
L ++ A ++ LS F E +N +D N + D F ++
Sbjct: 343 LQASKIA-------RENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKI 395
Query: 290 SDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRK--IENEVKEVLRIL 347
S DLN + L L LS + LR I +E+
Sbjct: 396 SFDLNVAQGLA----------------LLWEIIKSDNLSFVSKLRLAFIFDEI------- 432
Query: 348 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKG 407
+ E+L+ L++ + + +E++ LIEER A+ K+F ++D+IR +KG
Sbjct: 433 --MSLNLREEILKNLQNHDV----VIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKG 486
Query: 408 IALMDMGKET 417
L+D + T
Sbjct: 487 FVLVDTKEGT 496
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 158/320 (49%), Gaps = 32/320 (10%)
Query: 3 IIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDC 62
+ RA G + +L +R Q + DMA L+ LPP +D + ++ +M+ +++ +
Sbjct: 91 LFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGA 150
Query: 63 AYVVEG----DVFFAVEKSPNYGRLSGQRLEN--NRAGERVAVDSR--KRNPADFALWKA 114
AY+VE DV+F + + +G SG + ER R K + D LW+A
Sbjct: 151 AYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRA 210
Query: 115 AKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC 174
+ GEPSW SP+G GRPGWH+ECSA++ + + DI GGG DLIFPHHE A + +
Sbjct: 211 ERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVT 270
Query: 175 QDSNVS-YWMHNGHVTNNNEKMSKSLGNFFTIRQI-TERYHPLALRHFLISAHYRSPLNY 232
+ + +++H G + + KMSKS GN + Q+ + P A+R L S HYR +
Sbjct: 271 GERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFW 330
Query: 233 SVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDD 292
S LD A +A +++ A P A D I ++R ++DD
Sbjct: 331 SNEVLDEA-NARLARWRSATALPEA--------------PDATDVIARVRQ----YLADD 371
Query: 293 LNTSHILT---GAFQDALKF 309
L+T L G DAL +
Sbjct: 372 LDTPKALAALDGWCTDALSY 391
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 185 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222
+G + N EKMSKS+GN ++ ERY LR+FL+
Sbjct: 312 HGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 140 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL 199
++ YL S+ G I++ P +I +C +D+ ++Y +N +T + ++
Sbjct: 331 LTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPK---TYTI 387
Query: 200 GNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 242
N F + ++TE LRH + +A + L +++ + +D
Sbjct: 388 ANQFPLNKLTE-----LLRHDMAAAGFTEALTFALCSQEDIAD 425
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 132 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPH-HENEIAQSCAACQDSNVSYWMHNGHVTN 190
GW E + A Y D+ G D++F E++ + + +H +
Sbjct: 468 GWPEETEDLKAFYPG---DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDE 524
Query: 191 NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222
+KMSKS GN ++ ERY ALR LI
Sbjct: 525 KGQKMSKSKGNVIDPLEMVERYGADALRFALI 556
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 194 KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSV--LQLDSASDAVFYI 247
KMSK GNF + + + ALR+ +S + L + + LQ + +S+ V+YI
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYI 340
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 246 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 305
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 306 GDEFFFIEVNP 316
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 246 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 305
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 306 GDEFFFIEVNP 316
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 246 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 305
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 306 GDEFFFIEVNP 316
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 246 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 305
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 306 GDEFFFIEVNP 316
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 223 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 282
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 283 GDEFFFIEVNP 293
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 223 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 282
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 283 GDEFFFIEVNP 293
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 13 NPLSLSNRYC-----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67
N + L R C + +V++A L PT + R+ D Q+ + I + ++V
Sbjct: 223 NIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS 282
Query: 68 GDVFFAVEKSP 78
GD FF +E +P
Sbjct: 283 GDEFFFIEVNP 293
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 282
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 282
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 282
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 282
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 282
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 185 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 185 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 185 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 6/175 (3%)
Query: 145 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFF 203
LS D++ G D + I S A S + + +G V + +KMSKSLGN
Sbjct: 545 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 604
Query: 204 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE 263
Q+ ++ R ++ S Y + + S L SD I TL+ ++ F
Sbjct: 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNP 664
Query: 264 HGKT---ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 315
+ + + +N+LR EF A ++ L +Q+ FIN L+
Sbjct: 665 DTDSIPESELLEVDRYLLNRLR-EFTASTINNYENFDYLN-IYQEVQNFINVELS 717
>pdb|2LSG|A Chain A, Solution Structure Of The Mouse Rev1 C-Terminal Domain
Length = 104
Score = 28.1 bits (61), Expect = 9.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 355 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
+S+V LK+ ++ EED+LQ++ + KD K D + + R LM
Sbjct: 18 FSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKR----LMQQS 73
Query: 415 KETIW 419
E++W
Sbjct: 74 VESVW 78
>pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 276 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRK 335
D +NK DE IL A++ L S ++ SL+E ++
Sbjct: 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA---SLLEGEKR 166
Query: 336 IENEVKEVLRILGLLPPGAYSEVLQQLKDK 365
+ EV EV R+ + Y E++++LK K
Sbjct: 167 TQREVAEVARVTEVTVRNRYKELVEKLKIK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,314,708
Number of Sequences: 62578
Number of extensions: 488139
Number of successful extensions: 1311
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 32
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)