BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013130
(449 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 199/425 (46%), Positives = 263/425 (61%), Gaps = 15/425 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G + ++S RY + + DMA L PT +P+ +DHM I +I +I
Sbjct: 74 KIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMGGIISVIETLIAKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY +GDV++AVE P+Y RLSG+ LE+ AG RV VD RKRNP DFALWK +K GEPS
Sbjct: 134 HAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMDFALWKGSKPGEPS 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIAQS AA V Y
Sbjct: 194 WDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIAQSEAANGCQFVRY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHNG V N+EKMSKSLGNFFTIR++ E+Y P LR F++SAHYRSP+++S L+ A
Sbjct: 254 WMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRSPIDFSDQNLNDAQ 313
Query: 242 DAVFYIYQTLQDCEVALS----PFQEHGKTARINPAAEDCINKLR---DEFHARMSDDLN 294
+ IY L + A+ P Q + A + PA + KL+ F M DD N
Sbjct: 314 AGLERIYSCLAAVDGAMEGQDVPNQPV-EGAPLPPAGAELHEKLQSLISRFREAMDDDFN 372
Query: 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGA 354
T+ L G +A++ N + + P L+L+ +R++ E +VL + P A
Sbjct: 373 TAQAL-GVLFEAVRATNRFMAESGDQTPA--TLALLGQVRRLFAETGDVLGLF-TSQPAA 428
Query: 355 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
+ E ++Q K + E++ +++ QLI ERAAAR N+DF + D+IR L +KGI L+D
Sbjct: 429 WLESIKQAKSDQM---EISPQEIEQLIAERAAARTNRDFKRGDEIRDLLLQKGIQLLDSP 485
Query: 415 KETIW 419
+ T W
Sbjct: 486 QGTTW 490
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 352 bits (902), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 257/423 (60%), Gaps = 15/423 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G + ++++RY + DM L L PT +P+ +DH+E I +I ++I+N
Sbjct: 74 KIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIEDIISIIQRLIDNG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+GDV+FAVE P Y +LSG+ L++ AG RV VD RKRNP DFALWK +K GEP
Sbjct: 134 HAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMDFALWKGSKPGEPW 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECSAMS +L FDIHGGG DL+FPHHENEIAQS A V Y
Sbjct: 194 WESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENEIAQSEGANGCQFVKY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N+EKMSKSLGNFFTIR++ E + P LR F++ AHYRSPL+YS L A
Sbjct: 254 WLHNGFVNINSEKMSKSLGNFFTIREVLELFDPETLRFFILQAHYRSPLDYSDQNLREAQ 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAA----EDCINKLRDEFHARMSDDLNTSH 297
+ IY+ L + AL E TA PA+ + + L F M DD NT+
Sbjct: 314 AGLSRIYEALAALDQAL----EKPATAIHLPASAAEFAEKVAGLLPRFREAMDDDFNTAQ 369
Query: 298 ILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSE 357
L G D+++ +N L + + +E LR E+ VL + + P S+
Sbjct: 370 AL-GTLFDSIRTLNRLLA--EGGGSSSASRADLEQLRAAVTEIGAVLGLFRIKP----SD 422
Query: 358 VLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
L + + + E++ E++ LI ERAAARKNKDF +SD+IR L + I L+D + T
Sbjct: 423 WLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDEIRDYLLSRDIQLVDTPQGT 482
Query: 418 IWR 420
W+
Sbjct: 483 AWK 485
>sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysS PE=3 SV=1
Length = 485
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 192/431 (44%), Positives = 255/431 (59%), Gaps = 32/431 (7%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN+ GE+ +L+ RY Q D A LQ LPP +PR ++ ME I M+ Q+++
Sbjct: 73 KIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAILAMVRQLLDQG 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY E GD+++ V YG LSG+ LE+ RAGERV V+ K +P DF LWKAAK+GEP
Sbjct: 133 YAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDFVLWKAAKSGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+W+SPWGPGRPGWHIECSAMS L + FDIHGGG DL FPHHENEIAQS AA V+
Sbjct: 193 AWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQSEAATGGKFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG V N+EKMSKSLGNFFT+R++ E YHP LR+F++S+HYRSPLNY+ QLD+A
Sbjct: 253 YWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSPLNYTKQQLDTA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y L+ G + + + + R+ M DD NT L
Sbjct: 313 KAAMTRLYTALRGIPRGEDRASAQGLSWEFTDGGDPFVLRFREA----MDDDFNTPEALA 368
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
L + +LN ++ ++ SL LR + ILGLL E Q
Sbjct: 369 -----LLNEVRHALNRAREAGDTEKGQSLAVLLRSLGG-------ILGLLA----HEPEQ 412
Query: 361 QLKDK-----------ALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIA 409
L+D A + A L+ + + QL+ +R ARKNKD++++D+IR L +GI
Sbjct: 413 FLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGILKDQGIT 472
Query: 410 LMDMGKETIWR 420
L D T+WR
Sbjct: 473 LEDTAAGTLWR 483
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=cysS PE=3 SV=1
Length = 489
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 262/423 (61%), Gaps = 18/423 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN+ G +L+ R+ E+ DM +L L P +P+ ++H++++ D+I ++++ D
Sbjct: 74 KIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQEMIDIIQELVDKD 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY GDV++ V P YG+LSG+ +E+ +AG R++++ +KRNP DFALWKA+K GEPS
Sbjct: 134 MAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMDFALWKASKPGEPS 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWGPGRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIAQS A +
Sbjct: 194 WESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENEIAQSEGANGKPFANT 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+H+G VT +EKMSKSLGNF TI+ I + YHP LR F+ S YR+PL++S + + A
Sbjct: 254 WIHHGFVTIKDEKMSKSLGNFLTIKDILDHYHPEILRAFIFSTQYRNPLDFSEIAMQDAE 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPA---AEDC--INKLRDEFHARMSDDLNTS 296
A+ +Y+ L D Q+ K PA A+D +N + F M++D NT+
Sbjct: 314 TALVRLYECLHD-------IQQLAKGDPTLPALISAKDAAKLNSIETRFQEAMNNDFNTA 366
Query: 297 HILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYS 356
L G DA+K IN + L P + +++ + ++++ I+GLL A +
Sbjct: 367 LAL-GVLYDAIKIINRAQRALTDT-PSALDVKMLKGSMTL---IQKLAGIVGLLQEDA-N 420
Query: 357 EVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKE 416
LQQ K+K L ++TE ++ I++R AR NKD+++SD+IR L KGI L D
Sbjct: 421 LFLQQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIRDILLEKGITLKDGADG 480
Query: 417 TIW 419
T W
Sbjct: 481 TGW 483
>sp|A4J0Y9|SYC_DESRM Cysteine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
GN=cysS PE=3 SV=1
Length = 486
Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 251/419 (59%), Gaps = 7/419 (1%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RA + +PL L+ +Y QE+ VD L + P+VS+H+E+I D+I ++ +
Sbjct: 72 KIINRAAEEKIDPLELAQKYIQEFFVDADALNVMRADTHPKVSEHIEEIIDLIKRLEDQG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AYVV+GDV+FAV YG+LSG+ LE+ +AG RV VD RK++P DFALWKAAK GEPS
Sbjct: 132 HAYVVDGDVYFAVRSFAEYGKLSGRSLEDMQAGARVEVDPRKKDPMDFALWKAAKPGEPS 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECSAM+ YL + FDIHGGG DLIFPHHENEIAQS AAC+ Y
Sbjct: 192 WDSPWGSGRPGWHIECSAMAEKYLGNGFDIHGGGFDLIFPHHENEIAQSEAACKAPFARY 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHNG +T N EKMSKSLGNFF +R+I ++ P +R +L+S HYRSPL++ +L +
Sbjct: 252 WMHNGFITINQEKMSKSLGNFFLVREILAKFPPDVVRWYLLSTHYRSPLDFDDEKLVMSG 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ I L+ A+ G+ + E+ + ++R EF M DD NT+ +
Sbjct: 312 KGLERIKTALRLLYEAMDLPVYEGEDIQGAENFEETLQRIRLEFEKAMDDDFNTA-LAIS 370
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
F D K +N + L K L + + L + +K+ R+LG+L + L
Sbjct: 371 YFFDLAKEVNIYVGKLNSK----VTLEMRKILDQAHTLIKDFNRVLGILKEDKMTGKL-- 424
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
L + A LTE V +I+ R AR KD+S +D IR L G+ L D + W+
Sbjct: 425 LIEMAGADDTLTEGLVQLIIKIRQEARSKKDWSTADAIRDGLKELGVVLEDTPQGVRWK 483
>sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cysS PE=3 SV=1
Length = 493
Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 255/426 (59%), Gaps = 15/426 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRAND G + S++ RY + DM L L P +P ++++ + ++I +++
Sbjct: 74 KIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVPGMIEIIRVLMDKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY DVFF +EK P YG+LSG+++E+ AG RV VD+RKRNP DF LWK +K GEPS
Sbjct: 134 IAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLDFVLWKGSKPGEPS 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWGPGRPGWHIECSAM + +L FDIHGGG DLIFPHHENEIAQS AA V Y
Sbjct: 194 WDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENEIAQSEAAFGMPFVRY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V NNEKMSKSLGNF TIR + ++ HP +R F++S HYRSP+++S + A
Sbjct: 254 WLHNGFVNINNEKMSKSLGNFLTIRDVLQKVHPETVRFFVLSKHYRSPVDFSDETIGEAE 313
Query: 242 DAVFYIYQTLQDCEVALS-----PFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTS 296
+ +Y TL + + FQE + +P D I L F M +D NT+
Sbjct: 314 KGLERLYGTLGAVKERAAAGVEEAFQEKALRGQ-DPELFDQIAALSGAFREAMDNDFNTA 372
Query: 297 HILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP--PGA 354
L F + + L+ +KQ K +L R + +++ +LGLL P A
Sbjct: 373 QALGNLFS-LQRHLQRFLDKFGRKQLKGPASALA---RAGADAIRDHALVLGLLTREPEA 428
Query: 355 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
+ + LK +K LTE +V + IE R AR++K+F+++D++R ++ +KGI L D
Sbjct: 429 FQAEQRSLK---IKSTGLTEAEVERCIELRRQARQDKNFAEADRLREEIEKKGIQLEDSP 485
Query: 415 KETIWR 420
T WR
Sbjct: 486 AGTRWR 491
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/427 (43%), Positives = 256/427 (59%), Gaps = 18/427 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G +S R+ +E+ DM L PT QP+ ++H+++I ++ +I+ D
Sbjct: 74 KIINRANREGVTYDLISERFIKEFDRDMERLGLKLPTCQPKATEHIDEIISLVQTLIDKD 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY GDV F VEK +Y +LSG+ LE+ +AG R+ VD RKR+P DFALWK AK GEP
Sbjct: 134 FAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVDERKRHPMDFALWKEAKPGEPF 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECSAMS YL + FDIHGGG DLIFPHHENEIAQS AA V+Y
Sbjct: 194 WESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIFPHHENEIAQSEAATGKPFVNY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N+EKMSKSLGNFFTI+++ +RY LR FL+SAHYRSP+++S L A
Sbjct: 254 WLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEVLRFFLLSAHYRSPIDFSDQNLTEAE 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKT------ARINPAAEDCINK---LRDEFHARMSDD 292
+ IY+ L E L+ +G T + +N A + +K + F M DD
Sbjct: 314 AGLERIYKALAAVEETLAA--GNGCTGAPVDASSLNEAEGELFDKTTSISARFGEAMDDD 371
Query: 293 LNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 352
NT+ + F D ++ +N L+ L + I+ EV ++ +LG+
Sbjct: 372 FNTALAMAHVF-DLVRCVNRVLSETAGASDNICSLCTL-----IKAEVAKIAGVLGIFSS 425
Query: 353 GAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMD 412
S L++LK + ++ +++ +LI ER AARK KDF +SD+IR L K I L+D
Sbjct: 426 KPAS-FLERLKSRKAGNLDIAVDEIERLIAERTAARKAKDFKRSDEIRDQLAAKNIVLLD 484
Query: 413 MGKETIW 419
+ T W
Sbjct: 485 SQQGTTW 491
>sp|A5D5M0|SYC_PELTS Cysteine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1
Length = 484
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 248/419 (59%), Gaps = 9/419 (2%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RA + G++PL+L+ RY EY D L P VS+H+ I M+ +++
Sbjct: 72 KIINRAQEEGDDPLALARRYIGEYFKDADALNVRRADRHPLVSEHIPDIIKMVDELVKKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AYVV+G+V+F V K YG+LSG+ LE+ +AG RV VD RKR+P DFALWKAAK GEP
Sbjct: 132 AAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPRKRDPLDFALWKAAKPGEPC 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWGPGRPGWHIECSAMS YL + FDIHGGG DLIFPHHENEIAQS AA V Y
Sbjct: 192 WDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPHHENEIAQSEAATGQPFVRY 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHNG +T N EKMSKSLGNFF +R I ++ P +R FL+S HYRSPL++ ++ +A
Sbjct: 252 WMHNGFITVNEEKMSKSLGNFFLVRDILAKFPPELVRFFLLSTHYRSPLDFDGEKMAAAG 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ I +L+ AL G A + D +++R F A M DD NT+ + G
Sbjct: 312 RGLERIKTSLRLLYEALERPVSEGVQA---VCSRDPFDEIRASFEAAMDDDFNTA-LAIG 367
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
A D + N+++ Q + L +L + NE EVL I + GA +L
Sbjct: 368 AVFDLAREANTAVQRTGPAVSGQDRQILQYAL-DLFNEFNEVLGIFKV--DGASGRLL-- 422
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
+ A + L E + ++E R ARK KD+S +D+IR L GI L D + W+
Sbjct: 423 IDGAAGDDSGLVEGLINLILEVRQEARKRKDWSTADRIRDGLKELGILLEDTPQGVRWK 481
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 338 bits (866), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 180/421 (42%), Positives = 253/421 (60%), Gaps = 13/421 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G ++S R+ E+ DMA L PT+QP+ ++H+ ++ D+I+++I
Sbjct: 74 KIINRANQEGVPYNAISERFIAEFDRDMAALGLDLPTHQPKATEHIAEMIDVISRLIEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY +GDV+F VEK Y +LS + L+ +AG R+ V +KR+P DFALWK +K GEP
Sbjct: 134 FAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEKKRHPMDFALWKGSKPGEPF 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIAQS AA Y
Sbjct: 194 WESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQSEAANGKPFAHY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N+EKMSKSLGNFFTI+++ E+Y LR FL+SAHYRSP+++S L A
Sbjct: 254 WIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRSPIDFSDQNLREAE 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ IY TL + L+ E AE + + F M DD NT+ L
Sbjct: 314 AGLERIYGTLAGIDENLTKGAEGTAEETDRELAEKAVT-FPERFREAMDDDFNTAQALGF 372
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP--PGAYSEVL 359
F + S+ +L + + +L+ R + +++V +LG+ P A++E
Sbjct: 373 VFD----LVRSANRVLGEGKGGGSNRALLAEAR---DRIRKVGAVLGIFTSEPRAFAE-- 423
Query: 360 QQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 419
+LK++ +T E++ +LI ER AAR N+DF ++D+IR L KGI L+D + T W
Sbjct: 424 -RLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRDSLAAKGIMLLDSPQGTTW 482
Query: 420 R 420
+
Sbjct: 483 K 483
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 337 bits (865), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 184/425 (43%), Positives = 257/425 (60%), Gaps = 14/425 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G ++S R+ +E+ DMA L L PT QP+ ++H+ +I ++ +I+
Sbjct: 74 KIINRANREGVAYDAISERFIKEFDRDMAQLGLLLPTSQPKATEHIPEIITLVQTLIDKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY + GDV F VEK Y +LS + LE+ +AG R+ VD RKR+P DF LWK AK GEP
Sbjct: 134 FAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDERKRHPMDFVLWKEAKPGEPF 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIAQS AA V Y
Sbjct: 194 WESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQSEAASGKPFVKY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N+EKMSKSLGNFFTI+++ ++Y LR FL+SAHYRSPL++S L A
Sbjct: 254 WLHNGFVNINSEKMSKSLGNFFTIKEVLDKYDSEVLRFFLLSAHYRSPLDFSDQNLTEAE 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHG----KTARINPAAEDCINK---LRDEFHARMSDDLN 294
+ IY+ L + L+ G + + A + +K L F M DD N
Sbjct: 314 TGMERIYKALVAIDETLASNPATGGEEIDASSLGEAERELFDKSGSLPLRFREAMDDDFN 373
Query: 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGA 354
T+ + G D ++ +N L+ + K++ +L +++ + ++ +LG+
Sbjct: 374 TA-LAMGHIFDLVRCVNRVLS-----EAKERSNTLSALCAQVKANIGKIADVLGIFTSEP 427
Query: 355 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
S +L +LKD+ +++ E++ +LI ERAAARK KDF +SD+IR L K I L+D
Sbjct: 428 AS-LLTRLKDRKASELDISVEEIERLITERAAARKAKDFKRSDEIRDFLLGKNIVLLDSA 486
Query: 415 KETIW 419
+ T W
Sbjct: 487 QGTSW 491
>sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=cysS PE=3 SV=1
Length = 460
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 240/420 (57%), Gaps = 35/420 (8%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + GE+ +L++R+ D L LPP+ +PR ++H++ + MI ++
Sbjct: 73 KIIRRAAENGEDIRALTDRFIAAMHEDAEALGVLPPSAEPRATEHIDGMLAMIGTLVERG 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY + GDV++AV K YGRLSG+RLE+ RAGERVA D KR+P DF LWKAAK GEP
Sbjct: 133 YAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDEAKRDPLDFVLWKAAKPGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+WDSPWGPGRPGWHIECSAMS HYL + FDIHGGG DL FPHHENEIAQS AA + V+
Sbjct: 193 AWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFPHHENEIAQSEAATCEHFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG V N EKMSKSLGNFFT+R++ RY +R+F++S+HYRSPLNYS LD+A
Sbjct: 253 YWMHNGFVRVNEEKMSKSLGNFFTVREVLARYPAEVVRYFILSSHYRSPLNYSDEPLDAA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
+ +Y L+ + ++PA + R F A M DD NT +
Sbjct: 313 RAGLTRLYTALRGVQA-------------VDPAGQG--EGYRRRFQAAMDDDFNTPVAMA 357
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F I LN L+ + P L G
Sbjct: 358 VLFD-----IARELNRLRDEDPAGAAPLAGLLRELGGMLGLLAGDPEAFLKGG------- 405
Query: 361 QLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
+ +L E + LI +R AARK KDF+++D+IR +L +G+ L D T WR
Sbjct: 406 -------EAGDLDEAAIEALIAQRLAARKAKDFAEADRIRDELAGQGVVLEDGPGGTTWR 458
>sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1
Length = 481
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 182/421 (43%), Positives = 248/421 (58%), Gaps = 17/421 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G +S R+ E+ DMA L PTYQP+ ++H+ ++ +I +++
Sbjct: 74 KIINRANKEGVPFNVISERFIAEFDRDMAALGLDLPTYQPKATEHIAEMIQVIERLVAKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY +GDV+F+VE Y +LS + LE +AG R+ V +KR+P DFALWK +K GEP
Sbjct: 134 FAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPMDFALWKGSKPGEPY 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIAQS AA Y
Sbjct: 194 WDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQSEAANGKPFARY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N EKMSKSLGNFFTI+++ E Y LR FL+SAHYRSP+++S L A+
Sbjct: 254 WIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAA 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ IY L + A++ + RI+ + L F M DD NT+ L
Sbjct: 314 AGLERIYNALAGIDEAVAA--DGTGAGRIDEELAEKAAGLPTRFREAMDDDFNTAQALGY 371
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP--PGAYSEVL 359
F D ++ +N L + +++ S R+ + V +LGL PGA+ E L
Sbjct: 372 VF-DLVRAVNRVL------AEGEIDRAVLASARE---AIDRVGAVLGLFTSEPGAFVERL 421
Query: 360 QQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 419
+ K AL + ++ +LIEER AARK +DF ++D+IR L +GI L+D + T W
Sbjct: 422 KSRKAAALP---IEAAEIERLIEERNAARKARDFRRADEIRDTLAAQGILLLDSAQGTTW 478
Query: 420 R 420
+
Sbjct: 479 K 479
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/420 (44%), Positives = 255/420 (60%), Gaps = 40/420 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RA + E+ SL++R+ D L L P +P+ +++M++I+ MI+ +I D
Sbjct: 74 KIIQRALENKESIQSLTSRFIDAMHEDEKALNVLRPDMEPKATEYMDEIETMISTLIEKD 133
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY E GDV+F V+ +YGRLSG+ +E +G RV ++S K++P DF LWKA+K EP
Sbjct: 134 FAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINSVKKDPLDFVLWKASKENEP 193
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+W SPWG GRPGWHIECSAMS L + FDIHGGG+DL FPHHENEIAQS A + V+
Sbjct: 194 AWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFPHHENEIAQSECATGEHYVN 253
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
WMH G V ++EKMSKSLGNFFTIR++ ++YHP +R+FL+++HYRSP+NYS LD A
Sbjct: 254 SWMHCGFVRIDDEKMSKSLGNFFTIREVLKQYHPEVIRYFLLASHYRSPVNYSEENLDVA 313
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
+V +Y L+ L P + AE +KL EF A M+DD NT +
Sbjct: 314 KASVGRLYSALE-----LVPADQ----------AEPAESKLEAEFMAAMNDDFNTPQAMA 358
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F+ L K+ KQ+ L L+K+ N++ GLL A S
Sbjct: 359 VLFE------------LAKEVNKQKSPGLAALLKKLANQI-------GLLEQTAESFFKS 399
Query: 361 QLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
Q D ++LT+E + LI ERA ARK KDFS+SD+IR +L +GI L+D + T WR
Sbjct: 400 QPSD-----SDLTDEMIEALIVERAEARKAKDFSRSDEIRDELLAQGIELLDSAEGTSWR 454
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 254/426 (59%), Gaps = 27/426 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ G + +L+ + Q + DM L PT QP+ + H++ I +++ ++I+
Sbjct: 74 KIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHIDHIVNLVQRLIDRG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY +GDV+F+VE P+Y +LS + ++ R+G R+ +KRNP DFALWKAAK GEPS
Sbjct: 134 IAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMDFALWKAAKPGEPS 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIAQS A V Y
Sbjct: 194 WESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENEIAQSEGATGKPFVKY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N EKMSKSLGNFFTIR I + Y P LR F+++AHYRSP+++S
Sbjct: 254 WLHNGFVNVNQEKMSKSLGNFFTIRDILQTYDPEVLRFFILTAHYRSPIDFSD------- 306
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-------EDCINKLRDEFHARMSDDLN 294
Q LQD + LS F E A AA + L + F M DD N
Sbjct: 307 -------QNLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGATLENVFREAMDDDFN 359
Query: 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGA 354
T+ + G DA++ IN L K + +++++ + +L ++ VL + + P A
Sbjct: 360 TAAAI-GHLFDAVRTIN-RLITEKGFRKNREKVAQVRALYDALLKLGGVLGLF-VSDPAA 416
Query: 355 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
+ L+Q+ L TE D+ I +R ARKNKDF+++D+IR +L KGI L+D
Sbjct: 417 W---LKQMNLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRDELAAKGIQLLDGP 473
Query: 415 KETIWR 420
+ T W+
Sbjct: 474 QGTAWK 479
>sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=cysS PE=3 SV=2
Length = 462
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 244/423 (57%), Gaps = 39/423 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA +LGE +++ R+ + D L LPP ++PR + H++ I MI +++
Sbjct: 73 KIIRRAAELGEPMGAVTERFIRAMHEDAEALGVLPPDHEPRATGHIDDIIAMIERLVERG 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV + GDV+FAV P YG+LSG+R E+ RAG RV VD KR+P DFALWKAA+ GEP
Sbjct: 133 HAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDEGKRDPVDFALWKAARPGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+W SPWG GRPGWHIECSAMS L FDIHGGG+DL FPHHENEIAQS A V+
Sbjct: 193 AWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFPHHENEIAQSECATGHPFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNGHV N+EKM+KSLGNFFT+R++ + A+R FL+S+HYRSPLNYS+ L A
Sbjct: 253 YWMHNGHVRINDEKMAKSLGNFFTVREVLSEHRAEAVRLFLLSSHYRSPLNYSLDGLRQA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y L+ A P E R FHA M DD NT L
Sbjct: 313 QGALERLYLALRGLPEA--------------PVPEADPQGFRARFHAAMDDDFNTPEALA 358
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F+ + +N L++ + LR + +LGL LQ
Sbjct: 359 VLFE-----LAREVNRLRQGDDDAGAAAPGALLRVLGG-------VLGL---------LQ 397
Query: 361 QLKDKALKRAELT---EEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
++ L+ + + ++ L+ R ARKN+DF+++D+IR +L +GI L D + T
Sbjct: 398 DDPERFLRGGDAGGDEDAEIDALVARRTEARKNRDFAEADRIRDELAERGIILEDGPQGT 457
Query: 418 IWR 420
WR
Sbjct: 458 TWR 460
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 331 bits (849), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 182/421 (43%), Positives = 248/421 (58%), Gaps = 18/421 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G +S R+ +E+ DMA L PT+QP+ ++H+ +I +++ ++I+
Sbjct: 74 KIINRANRDGVAYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIPEIINLVQKLIDKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY DVF+ V++ Y +LS + LE+ +AG R+ VD RK +P DFALWK AK GEP
Sbjct: 134 FAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMDFALWKGAKPGEPY 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECSAMS +L DIHGGG DLIFPHHENEIAQS AA V Y
Sbjct: 194 WESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIAQSEAASGKPFVKY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N+EKMSKSLGNFFTI++I E Y LR FL+SAHYRSP+++S L A
Sbjct: 254 WLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAE 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ IY+ L + L+ H N + + F M DD NT+ L G
Sbjct: 314 LGLERIYKALAGIDERLAS-GAHTPADADNTEFAEKVAGFAGRFGDAMDDDFNTALAL-G 371
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP--PGAYSEVL 359
D ++ IN L L+E K++ EV ++ +LG+ P A+ L
Sbjct: 372 HLFDLVRVINREL--------PTASTGLLE---KVKAEVAKMAAVLGICDSVPAAF---L 417
Query: 360 QQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 419
Q++KD+ E++ E++ LI ERA ARK K+F + D+IR L K I L+D + T W
Sbjct: 418 QRMKDRKTSDMEMSAEEIETLIAERAEARKAKNFKRGDEIRDLLLEKNIVLLDSAQGTTW 477
Query: 420 R 420
+
Sbjct: 478 K 478
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 246/423 (58%), Gaps = 15/423 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G + ++ +Y EY DM L +P+ ++H+ ++ ++I +IN
Sbjct: 72 KIINRANKEGVSWKEIAEKYTGEYYKDMDRLGITRADIEPKATEHINEMIEIIQTLINKG 131
Query: 62 CAYVVE----GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 117
AY +E V+F+VEK P YG+LS ++++ +G RV VD RK++P DFALWKA+K
Sbjct: 132 YAYEIEEGQAKSVYFSVEKFPQYGKLSKKKIDELISGARVEVDERKKSPLDFALWKASKP 191
Query: 118 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDS 177
GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIAQS A
Sbjct: 192 GEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGGADLIFPHHENEIAQSEAFTGKP 251
Query: 178 NVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQL 237
YW+HNG VT N EKMSKSLGN IR + + Y ALR FL+S+HYRSP+ ++ +
Sbjct: 252 FAKYWIHNGFVTINKEKMSKSLGNVLNIRDLLDIYDAEALRLFLLSSHYRSPIEFAHEYI 311
Query: 238 DSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSH 297
A V +Y T+ E + + K++ + + L+ EF M DD NT+
Sbjct: 312 KEAEATVDRVYSTIMRIE-DFEKIEINDKSSIEFDKVKAMLENLKPEFEKAMDDDFNTAK 370
Query: 298 ILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSE 357
L F+ FI + KK + +++ + + ++ E+ VL + P Y +
Sbjct: 371 ALGILFE----FIKEINRFMDKKPSQNKEIDFLVTAKRAIKEIGSVLNLFQRQPVDWYRD 426
Query: 358 VLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
+L+ +K+ + EE++ +LI+ER ARKNKD+ K+D IR L KGI L D T
Sbjct: 427 LLK------VKKIAIKEEEINRLIKERTEARKNKDWKKADSIREQLLSKGIILEDKPDRT 480
Query: 418 IWR 420
IW+
Sbjct: 481 IWK 483
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/425 (43%), Positives = 244/425 (57%), Gaps = 47/425 (11%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + E+ +L+ R+ Q D A L PP+++PR + H+E + MI +++
Sbjct: 73 KIIRRAQENKESIEALTARFIQAMEEDAAALGVEPPSWEPRATRHVEDMIAMIQVLVDKK 132
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY GDV++AV + P YG+LSG+ L+ RAGERV VD K +P DF LWKAAK GEP
Sbjct: 133 LAYPASNGDVYYAVHRFPGYGKLSGKSLDELRAGERVIVDPHKNDPLDFVLWKAAKPGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
WDSPWGPGRPGWHIECSAM HYL FDIHGGG DL FPHHENEIAQS A V+
Sbjct: 193 QWDSPWGPGRPGWHIECSAMGEHYLGEHFDIHGGGQDLQFPHHENEIAQSEGAHGHPFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG V N+EKMSKSLGNFFT+R+I + P +R F++ AHYRSPLNY+ +QL+ A
Sbjct: 253 YWMHNGFVRVNDEKMSKSLGNFFTVREILAHFQPEVVRFFILRAHYRSPLNYADMQLEDA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y L+ EV + D + F M+DD NT L
Sbjct: 313 GRALDRLYTALKGIEVH-------------DEVEIDWDDPYASRFREAMNDDFNTPEALA 359
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F + + +N K + P+ ++L+++L +LGL LQ
Sbjct: 360 VLFD-----LATEVN--KTRLPR--DIALMKALGG----------VLGL---------LQ 391
Query: 361 QLKDKALKRAE-----LTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGK 415
Q K ++A+ E V QLI++R AR NKD+ ++D+IR +L I L D
Sbjct: 392 QDPWKYFQQADSEDPAFAPEKVEQLIQQRLVARANKDYREADRIRKELMEANIILEDGPH 451
Query: 416 ETIWR 420
T WR
Sbjct: 452 GTTWR 456
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1
Length = 480
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/427 (42%), Positives = 245/427 (57%), Gaps = 30/427 (7%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN G +S R+ +E+ DMA L PT+QP+ ++H+ +I ++ +I+
Sbjct: 74 KIINRANRDGVPYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIPEIIALVQTLIDKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY DVF+ V++ Y +LS + LE+ +AG R+ VD RK +P DFALWK AK GEP
Sbjct: 134 FAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMDFALWKGAKPGEPY 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECSAMS +L DIHGGG DLIFPHHENEIAQS AA V Y
Sbjct: 194 WESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIAQSEAASGKPFVKY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG V N+EKMSKSLGNFFTI++I E Y LR FL+SAHYRSP+++S L A
Sbjct: 254 WLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAE 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC------INKLRDEFHARMSDDLNT 295
+ IY+ AL+ E + PA D + F M DD NT
Sbjct: 314 LGLERIYK-------ALAGIYERLASGANTPAGADNAEFVEKVAGFAGRFGDAMDDDFNT 366
Query: 296 SHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP--PG 353
+ L G D ++ IN L L+E + EV ++ +LG+ P
Sbjct: 367 ALAL-GHLFDLVRVINREL--------PTASTGLLEQAKA---EVAKMAAVLGICDSVPA 414
Query: 354 AYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDM 413
A+ LQ++KD+ E++ E++ LI ERA ARK K+F + D+IR L K I L+D
Sbjct: 415 AF---LQRMKDRKTSDIEMSAEEIEALIAERAEARKAKNFKRGDEIRDLLLEKNIVLLDS 471
Query: 414 GKETIWR 420
+ T W+
Sbjct: 472 AQGTTWK 478
>sp|Q2SK40|SYC_HAHCH Cysteine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=cysS PE=3 SV=1
Length = 467
Score = 324 bits (831), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 182/420 (43%), Positives = 254/420 (60%), Gaps = 28/420 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+I+ RA D GE+ +L+ R+ D L L PT +PR + H+++I MI ++++
Sbjct: 73 KILNRARDNGESVDALTARFIDAMHEDERALGVLSPTSEPRATGHIDEIIAMIQRLMDKG 132
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY GDV+++VE+ +YG+LS Q+L+ RAG R+ VD+ KR+PADF LWKAAK GE
Sbjct: 133 YAYHASNGDVYYSVEQFADYGKLSKQKLDEIRAGARIEVDAEKRSPADFVLWKAAKPGEL 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SWDSPWG GRPGWHIECSAMS L FDIHGGG DL FPHHENEIAQS AA V+
Sbjct: 193 SWDSPWGEGRPGWHIECSAMSTRCLGDTFDIHGGGPDLKFPHHENEIAQSEAATGCKYVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMH G V N EKMSKSLGNFFTIR+I ++Y +R+FL S+HYRS ++YS + L+ A
Sbjct: 253 YWMHAGAVRVNKEKMSKSLGNFFTIREILDKYPAEVVRYFLASSHYRSAIDYSDVALEEA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
+ +Y ++++ + E G + P + + R+ FH M DD NTS +
Sbjct: 313 RSGLERLYNSIREL------YGELGAVSMDEP----LVGEYRERFHQAMDDDFNTSSAVA 362
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F D K +N + KK+ + + LSL + + ++ +LGLL A E L
Sbjct: 363 VLF-DMAKAVN-----VAKKEDRTRALSLAKGM-------VDLAEVLGLLQ--ADPESLM 407
Query: 361 QLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
Q + + + L+ ++ I +R AAR NKDF++SD+IR L KG+ L D + T W+
Sbjct: 408 QGEGEEV--GGLSVAEIEDFIAQRNAARANKDFAESDRIRDLLKEKGVLLNDSREGTSWQ 465
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 324 bits (830), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 177/419 (42%), Positives = 245/419 (58%), Gaps = 20/419 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE+P L+ ++ + +L DM L+ P PRV++HM+ I I ++
Sbjct: 74 KIIKRANETGEDPKELAEKFLRIFLEDMKALKVKPADIYPRVTEHMQDIISFIKKLQEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+F V K +YG+LS +LE+ G RV KRNP DFALWK AK GEP
Sbjct: 134 YAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEGKRNPEDFALWKKAKPGEPK 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS A V Y
Sbjct: 194 WESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEACFGHEWVHY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMH G + N EKMSKSLGNF T+R++ +RY+P +R F++ HYRSPL+YS ++ A
Sbjct: 254 WMHTGFLMVNGEKMSKSLGNFVTVRELLKRYNPEVIRLFVLQRHYRSPLDYSEEGIEHAK 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ + +Y TL++ VA+S + + A + I R +F+ M DD NT+ L
Sbjct: 314 NNLERLYNTLENIRVAMSKAEISFRWDEPEFRAYEAIRDARKKFYEAMDDDFNTAEALKA 373
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
F+ + IN L ++K PK+ LRK K+V + GL + + ++
Sbjct: 374 VFEVS-NAINRYLTEVEK--PKES------ILRKAWEFFKDVGEVFGL-----FEDYFKE 419
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
++AE EE + L+E RA RK K F +D+IR +L + GI L D + T+W+
Sbjct: 420 ------QKAENDEELINLLVEVRAQLRKEKKFDLADKIREELRKLGIQLEDTPQGTVWK 472
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 324 bits (830), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 190/422 (45%), Positives = 243/422 (57%), Gaps = 34/422 (8%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + GE +L+ R+ + D L LPP ++PR ++ ++ I MI +I
Sbjct: 73 KIIRRAVENGETIGALTARFIEAMHEDERALGVLPPDHEPRATESIDDILAMIGTLIERG 132
Query: 62 CAYV-VEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV GDVF+AV PNYGRLSG+ L+ RAGER+ VD KR+P DF LWK+AK GEP
Sbjct: 133 HAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDEAKRDPLDFVLWKSAKPGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
W SPWGPGRPGWHIECSAMS L + FDIHGGG+DL FPHHENEIAQS A + V+
Sbjct: 193 FWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFPHHENEIAQSEGATGEHFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG V N EKMSKSLGNFFT+R+I RY P +R F++++HYRSPLNYS LD A
Sbjct: 253 YWMHNGFVRINEEKMSKSLGNFFTVREILARYRPEVVRFFILNSHYRSPLNYSDENLDEA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
+ A+ +Y L+ L P P ED F M DD NT +
Sbjct: 313 AAALSRLYTALRGLAPDL-PL----------PLGEDRDEGFSSRFADAMQDDFNTPEAIA 361
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL--PPGAYSEV 358
F D + IN K + +L +L+ + N +LGLL P AY
Sbjct: 362 VLF-DLAREINR-----HKAAEPAKAAALGATLKSLGN-------VLGLLQTDPEAY--- 405
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
K A + L++ D+ I R ARK K++++SD+IR +L +GI L D T
Sbjct: 406 ---FKSDA-GGSGLSDADIETRIRARLEARKAKNWAESDRIRDELKAQGIILEDSAAGTT 461
Query: 419 WR 420
WR
Sbjct: 462 WR 463
>sp|Q82Y45|SYC_NITEU Cysteine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=cysS PE=3 SV=1
Length = 465
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/427 (42%), Positives = 247/427 (57%), Gaps = 44/427 (10%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + E +L+ RY Q D L + P+++PR +++++ + MI ++N +
Sbjct: 73 KIIRRALENHEPFSALTARYIQAMEEDAMALGVISPSFEPRATEYVDSMIAMIESLLNRE 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV GDVF+ V + P YG+LSG+ L++ RAGERV +D+ KR+P DF LWKAAK EP
Sbjct: 133 LAYVASNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRDPLDFVLWKAAKPDEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SWDSPWG GRPGWHIECSAMS HYL +FDIHGGG DL FPHHENEIAQS S+V+
Sbjct: 193 SWDSPWGKGRPGWHIECSAMSEHYLGDQFDIHGGGQDLQFPHHENEIAQSEGVHGHSHVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG V +NEKMSKSLGNFFT+R++ RY P +R F++ AHYRSPLNYS L+ A
Sbjct: 253 YWMHNGFVRVDNEKMSKSLGNFFTVREVLTRYQPEVVRFFIVRAHYRSPLNYSDAHLNDA 312
Query: 241 SDAVFYIYQTL------QDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLN 294
A+ +Y L QD EVA TA I+ E+ + R F + M+DD N
Sbjct: 313 RSALERLYTVLKNHAPSQDSEVA---------TAVID--WENNVYARR--FMSAMNDDFN 359
Query: 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL-GLLPPG 353
T + F A E+ R ++ +L+ L G+L
Sbjct: 360 TPEAVAVLFDLA-----------------------SEANRTGDSHYASLLKALGGVLGLL 396
Query: 354 AYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDM 413
L+ + + E++ +I++R ARK ++F+++D +R L GI L D
Sbjct: 397 QQPPQQYLQYPAHLQDGQYSVEEIENMIQQRLQARKERNFAQADTLRQQLAEAGIILEDS 456
Query: 414 GKETIWR 420
+ T WR
Sbjct: 457 PQGTTWR 463
>sp|B9MMM6|SYC_CALBD Cysteine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=cysS PE=3 SV=1
Length = 465
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 172/416 (41%), Positives = 243/416 (58%), Gaps = 28/416 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
++I RAN G L+ R+ QEY D L T PR ++ +E + +I ++I+
Sbjct: 72 KMINRANKEGITVFELAERFIQEYYKDADRLNVKRATKNPRATEEIEDMIALIQRLIDKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AYVV+GDV+F K YG+LS + +E AG RV + +K +P DFALWKA K GEP+
Sbjct: 132 YAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEKKEDPLDFALWKAKKEGEPA 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W SPWG GRPGWHIECS M+ YL DIH GG DLIFPHHENEIAQS AA +
Sbjct: 192 WSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPHHENEIAQSEAATGKPFARF 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP ALR F++ AHYR PLN+S+ ++ A
Sbjct: 252 WLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEALRLFMLQAHYRKPLNFSIDLIEQAE 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
A+ IY ++ E + Q ++ + + I +L+ +F M DDLNT+ TG
Sbjct: 312 VALKRIYTCYENLEFLI---QNAASSSENDDKLKAAIEELKAKFIDAMEDDLNTAEA-TG 367
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
+ ++ IN+ N K E+L ++ +KE+ ILG+L + E
Sbjct: 368 YLFEMVREINTYANSCSK-----------ETLTFAKDTLKELCSILGILEQYSAKE---- 412
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
E + +L+L+E+R ARK K+F+++D+IR +L G ++D + T
Sbjct: 413 ---------EAIPQQILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLDTPQGT 459
>sp|Q9UYV2|SYC_PYRAB Cysteine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=cysS PE=3 SV=1
Length = 477
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 171/422 (40%), Positives = 248/422 (58%), Gaps = 26/422 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RA + GE+P L+ R+ + +L DM L+ P PRV++H++ I + I ++
Sbjct: 74 KIIKRAQETGEDPGKLAERFIKVFLEDMNALKVKPADIYPRVTEHIDDIIEFIKKLKEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+F V+K +YG+LSG ++E R G RV K+NP DFALWK AK GEP
Sbjct: 134 YAYEGSDGVYFEVQKFKDYGKLSGVKIEELRKGARVEPGEGKKNPEDFALWKKAKPGEPK 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS A V Y
Sbjct: 194 WDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEACFGHEWVRY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+H G V EKMSKSLGNF T+R++ +RY P +R F++ HYRSPL+Y+ L A
Sbjct: 254 WLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRLFVLQKHYRSPLDYTEEGLQHAK 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ + +Y TL++ +A+ + K + + A + I + R +F+ M DD NT+ L
Sbjct: 314 NNLERLYNTLENIRIAMRNAELSYKWSEKDFEAYEAIREARKKFYDAMDDDFNTAEALKA 373
Query: 302 AFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVL 359
F+ +++++N +L+ +PK+ L + E +++ SEV
Sbjct: 374 VFE-----VSNAINKYILEVDKPKESIL----------RKALEFFKVV--------SEVF 410
Query: 360 QQLKDKALKRAELTEEDVLQ-LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
+D + + EE +++ L+E R RK K F +D+IR +L + GI L D G+ET+
Sbjct: 411 GIFEDYFKEEKKGEEEKLIELLVEVRKQLRKEKRFDLADKIREELRKLGIQLEDKGQETV 470
Query: 419 WR 420
W+
Sbjct: 471 WK 472
>sp|Q8U227|SYC_PYRFU Cysteine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=cysS PE=3 SV=2
Length = 477
Score = 321 bits (822), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 173/422 (40%), Positives = 236/422 (55%), Gaps = 18/422 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RA + GE+P L+ R+ + +L DM L+ P PRV+DH++ I + I ++
Sbjct: 73 KIIKRARETGEDPKELAERFIKIFLEDMEALKVKPADIYPRVTDHIDDIIEFIGKLKEKG 132
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY ++F V+K P YG+LSG ++E+ + G RV K+NP DFALWK AK GEP
Sbjct: 133 YAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEPGEGKKNPEDFALWKKAKPGEPK 192
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS A V Y
Sbjct: 193 WDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEACFGHEWVKY 252
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+H G V EKMSKSLGNF TIR++ +RY P +R F++ HYRSPL Y+ L A
Sbjct: 253 WLHTGFVMVKGEKMSKSLGNFVTIRELLKRYEPEVIRFFVLQKHYRSPLEYTEEGLQHAK 312
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ + +Y TL++ VAL + + + I + + +F+ M DD NT+ L
Sbjct: 313 NNLQRLYNTLENIRVALRNAEISYTWGELEFKTYEIIREGKRKFYEAMDDDFNTAEALKA 372
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
F+ A IN L K PK+ L KI +EV G + + ++
Sbjct: 373 VFEVA-NAINKYLTEANK--PKESILRKALEFFKIVSEV-----------FGVFEDYFRE 418
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 421
+ + +L E L+E R RK K + +D IR +L + GI L D G ET W+
Sbjct: 419 ETKEREESEKLIE----LLVEVRKQLRKEKRYELADMIREELKKLGIQLEDRGSETTWKR 474
Query: 422 CV 423
+
Sbjct: 475 II 476
>sp|A4XHE2|SYC_CALS8 Cysteine--tRNA ligase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=cysS PE=3 SV=1
Length = 465
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/416 (41%), Positives = 244/416 (58%), Gaps = 28/416 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
++I RAN G L+ R+ QEY D L T PR ++ +E + +I ++I+
Sbjct: 72 KMINRANKEGITVFELAERFIQEYYKDADRLNVRRATKSPRATEEIEDMIALIQRLIDKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AYVV+GDV+F K YG+LS + +E+ AG RV +K +P DFALWKA K GEP+
Sbjct: 132 YAYVVDGDVYFRTRKFAEYGKLSHKNIEDLMAGARVDPSEKKEDPLDFALWKAKKEGEPA 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECS M+ YL DIH GG DLIFPHHENEIAQS AA +
Sbjct: 192 WNSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPHHENEIAQSEAATGKPFARF 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP ALR F++ AHYR PLN+S+ ++ A
Sbjct: 252 WLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEALRLFMLQAHYRKPLNFSIDLIEQAE 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
A+ IY ++ E + Q ++ + + I +L+ +F M DDLNT+ TG
Sbjct: 312 VALKRIYTCYENLEFLI---QNAASSSENDDKLKAAIEELKAKFIDAMEDDLNTAEA-TG 367
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
+ ++ IN+ N K E+L ++ +KE+ ILG+L + E
Sbjct: 368 YLFEMVREINTHANSCSK-----------ETLTFAKDILKELCSILGILEQYSAKE---- 412
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
E +++L+L+E+R ARK K+F ++D+IR +L G ++D + T
Sbjct: 413 ---------EAIPQEILELVEKRNQARKAKNFLEADRIRDELKSLGYIVLDTPQGT 459
>sp|Q7NX82|SYC_CHRVO Cysteine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=cysS PE=3 SV=2
Length = 457
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 183/422 (43%), Positives = 239/422 (56%), Gaps = 42/422 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RA + G P L + D A L LPPT++PR + H+ + MI Q+I N
Sbjct: 73 KIIKRALERGITPEQLVEETIADMRQDAAALGLLPPTHEPRATHHVGGMVAMIEQLIANG 132
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY GDV++AV + YG+LSG+ L+ RAGERV VD KR+P DF LWKAAK GEP
Sbjct: 133 KAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEVDPNKRDPLDFVLWKAAKPGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SWDSPWG GRPGWHIECS MS H+L FDIHGGG DL FPHHENEIAQS A V+
Sbjct: 193 SWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQFPHHENEIAQSEGAHGHQYVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YW+HNG + + EKMSKSLGNFFTIR + + + +R F++ +HYRSP+NY+ L+ A
Sbjct: 253 YWLHNGFINVDGEKMSKSLGNFFTIRDVLQHFDGEVIRFFIVRSHYRSPVNYTDSILNDA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQE--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
+ +Y L+ E+ S + H AR F A M DD TS
Sbjct: 313 KHGLTRLYTALRGIELPTSDGIDWNHAYAAR---------------FKAAMDDDFGTSEA 357
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F+ + +N K + P+ +L +K++ +LGLL EV
Sbjct: 358 VAVLFE-----LAGEVN--KSRDPQLARL------------LKDLGGVLGLLTRD--PEV 396
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
Q + EL+ E V LI+ R AR KD+++SD+IR +LT KGI L D TI
Sbjct: 397 FLQ---GGVGEGELSAEQVEALIQARKDARAAKDWAESDRIRDELTAKGIVLEDGAGGTI 453
Query: 419 WR 420
WR
Sbjct: 454 WR 455
>sp|Q1H417|SYC_METFK Cysteine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cysS PE=3 SV=1
Length = 455
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 187/423 (44%), Positives = 247/423 (58%), Gaps = 46/423 (10%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN+ GE +L++R+ D A L P +PR +D++ ++ MI +I
Sbjct: 73 KIIARANENGETINALTDRFIAAMNEDAARLGVWRPDLEPRATDYIHEMIAMIVALIEKH 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY + GDV++AV +YG+LSG+ LE+ RAGERV VD+ KR+P DF LWKAAK GEP
Sbjct: 133 HAYAADNGDVYYAVSSFASYGKLSGKSLEDLRAGERVEVDAHKRDPMDFVLWKAAKPGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SWDSPWGPGRPGWHIECSAM A +L FDIHGGG DL FPHHENEIAQS A + V+
Sbjct: 193 SWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFPHHENEIAQSEGAHGCTFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG + ++EKMSKSLGNFFTIR++ E+Y +R F++ AHYRSPLNYS LD A
Sbjct: 253 YWMHNGFIRVDDEKMSKSLGNFFTIREVLEKYDAEVVRFFILRAHYRSPLNYSSHHLDDA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y TL+ E+ P AE F + DD NT
Sbjct: 313 KQALTRLYNTLRGRELPQLDIDWR------QPEAE--------RFKQALDDDFNTPEAFA 358
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F+ + S N + Q +L+++L LGL LQ
Sbjct: 359 VLFE-----LASEAN----RTGSAVQAALLKALAG----------QLGL---------LQ 390
Query: 361 QLKDKALKR---AELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
+ D+ LK A L+ +++ +LI ER AARK K+F+++D+IR LT +GI L D + T
Sbjct: 391 RDPDEFLKGEAVAGLSPDEIERLIAERLAARKCKNFAEADRIRDALTAQGIILEDTPQGT 450
Query: 418 IWR 420
WR
Sbjct: 451 SWR 453
>sp|O58370|SYC_PYRHO Cysteine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=cysS
PE=3 SV=1
Length = 476
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/421 (41%), Positives = 243/421 (57%), Gaps = 24/421 (5%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + GE+P L+ ++ + +L DM L+ P PRV++H+E I I ++
Sbjct: 74 KIIRRAKETGEDPAKLAEKFIKVFLEDMKALKVKPADIYPRVTEHIEDIIQFIERLKEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+F V+K YG+LSG +LE R G RV K+NP DFALWK AK GEP
Sbjct: 134 YAYEGSDGVYFEVQKFKEYGKLSGVKLEELRKGARVEPGEGKKNPEDFALWKKAKPGEPK 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS A V Y
Sbjct: 194 WESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEACFGHEWVHY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+H G V EKMSKSLGNF T+R++ +RY P +R F++ HYRSPL+YS L A
Sbjct: 254 WLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRFFVLQKHYRSPLDYSEEGLQHAK 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ + +Y TL++ +A+ + + A + I + R +F+ M DD NT+ L
Sbjct: 314 NNLERLYNTLENIRIAMENAELAYTWDENDFKAYNSIKEARRKFYEAMDDDFNTAEALKA 373
Query: 302 AFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVL 359
F+ +++++N + + ++PK+ LRK + V I G+
Sbjct: 374 VFE-----VSNAINKYITEAEKPKES------VLRKAWEFFRTVGEIFGIF--------- 413
Query: 360 QQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 419
+ ++A+ E+ + LI+ RA RK + F +D+IR +L + GI L D GKETIW
Sbjct: 414 --EEYFKEEKAKEEEKLIELLIQVRAELRKERKFELADKIREELRKLGIQLEDKGKETIW 471
Query: 420 R 420
+
Sbjct: 472 K 472
>sp|Q8R7T3|SYC_THETN Cysteine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=cysS PE=3
SV=1
Length = 467
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 173/422 (40%), Positives = 240/422 (56%), Gaps = 32/422 (7%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RA + ++ R+ +EY D L T PR ++H++ I + I +I+
Sbjct: 72 KIINRAKEENTTEKEIAERFIEEYFKDADALGIKRATVHPRATEHIDDIIEFIKILIDKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AYVV+G+V+F K +YG+LS + ++ AG RV +D +K+NP DFALWKA K GEP+
Sbjct: 132 YAYVVDGNVYFETAKFKDYGKLSHKNIDELMAGARVEIDEKKKNPLDFALWKAQKPGEPA 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECS MS YL DIH GG DLIFPHHENEIAQS AA Y
Sbjct: 192 WDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPHHENEIAQSEAAYDQPFSKY 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMH G++ NNEKMSKS GNFFT+R++TE+Y P LR F++ AHYRSP+N+S+ LD A
Sbjct: 252 WMHIGYLNVNNEKMSKSKGNFFTVRELTEKYDPEVLRLFMLMAHYRSPINFSLDLLDQAK 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKL---RDEFHARMSDDLNTSHI 298
A Y+ L + V L K ++ +D I K + +F M DD NT+
Sbjct: 312 SA----YERLSNAVVNLKHLANITKDRELSDEEKDLIVKFDEYKKQFEEAMDDDFNTADA 367
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
++ F+ A K N++L+ K+ + L + L +LGL A +E+
Sbjct: 368 ISVLFEMA-KTANANLSGNSSKKLVEYILEMFLKLSD----------VLGLSYKNAETEI 416
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
+E++L+LIEER ARK K++ +D+IR L +GI L D +
Sbjct: 417 --------------EDEEILRLIEERQKARKEKNWKLADEIRDKLKERGIILEDTPEGVR 462
Query: 419 WR 420
W+
Sbjct: 463 WK 464
>sp|A1WT89|SYC_HALHL Cysteine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=cysS PE=3 SV=1
Length = 459
Score = 318 bits (815), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/422 (41%), Positives = 242/422 (57%), Gaps = 41/422 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + GE +L++R+ + D + L PP ++PR ++ +E + +I ++I
Sbjct: 73 KIIRRAAENGEPMTALTDRFIRAMHEDCSALGVEPPDHEPRATERLESMIALIEELIAGG 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV + GDV+F+V P YG+LSG+R+E R+G R+ D K +P DF LWKAAK+GEP
Sbjct: 133 HAYVGDNGDVYFSVASFPEYGKLSGRRVEELRSGSRIEPDEAKHDPVDFVLWKAAKSGEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+W SPWG GRPGWHIECSAMS L S FDIHGGG+DL FPHHENEIAQS A V+
Sbjct: 193 AWPSPWGDGRPGWHIECSAMSRDLLGSHFDIHGGGVDLQFPHHENEIAQSECASGHRFVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNGHV ++EKM+KSLGNFFT+R + + +R FL+S+HYRSPLNY+ LD A
Sbjct: 253 YWMHNGHVRIDDEKMAKSLGNFFTVRDVLAEHPAEVVRLFLLSSHYRSPLNYTGDALDEA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
+ +Y L+ PAA ++ R+ F M DD NT L
Sbjct: 313 RGGLERLYNALRGL-----------------PAAAPARSQARERFREAMDDDFNTREALA 355
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F A +N L++ S LR++ GA +LQ
Sbjct: 356 VLFDGA-----REINRLREAGDASGAASAAAELREL----------------GAVLGLLQ 394
Query: 361 QLKDKALKR--AELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
Q + L+ A+ E++ L+ +R AARK KDF+++D+IR +L +GI L D + T
Sbjct: 395 QDPEAYLRGDVADAEAEEIESLVAQRTAARKAKDFAEADRIRDELQARGIELEDTPEGTK 454
Query: 419 WR 420
WR
Sbjct: 455 WR 456
>sp|Q5QYP3|SYC_IDILO Cysteine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=cysS PE=3 SV=1
Length = 459
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/420 (42%), Positives = 245/420 (58%), Gaps = 37/420 (8%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RA + GE+ ++ R+ +E D L + P +PRV+ HM++I MI ++I N
Sbjct: 74 KIIKRAAENGEDFHQVTERFIREMHKDFDALNLVRPDIEPRVTSHMDEIILMIERLIENG 133
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY GDV F V +YG+LS Q LE +AG RV VD+ K++P DF LWK+AK GEP
Sbjct: 134 NAYEAGNGDVLFDVSTFNDYGKLSRQDLEQLQAGSRVDVDAAKQDPLDFVLWKSAKPGEP 193
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SW SPWG GRPGWHIECSAM+ +L S FDIHGGG DL FPHHENEIAQSC A Q V
Sbjct: 194 SWSSPWGEGRPGWHIECSAMNKKHLGSTFDIHGGGSDLSFPHHENEIAQSCCANQSEYVK 253
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMH+G V +NEKMSKSLGNFFTIR + E+Y +R+FL+S+HYRS LNY+ LD A
Sbjct: 254 YWMHSGMVQVDNEKMSKSLGNFFTIRSVLEQYDAETVRYFLLSSHYRSQLNYTQENLDQA 313
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y L+D ++P A+E+ +K F M DDLN ++
Sbjct: 314 HSALERLYTALRD----ITP----------QTASEELRSKYWQSFQQAMDDDLNAPEAMS 359
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F+ I +N ++ P ++ ++ + + E+ ++GLL E LQ
Sbjct: 360 VLFE-----IAREINRNRESAP--------DTAAQLAHVLLELAEVMGLLQQSP-EEFLQ 405
Query: 361 QLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
D K + LI +R AR++KD++ +D+ R +LT GI L D + T WR
Sbjct: 406 GDDDDVAK--------IEALIAKRNQAREDKDWAAADEARDELTNMGIVLEDGAEGTRWR 457
>sp|B0TC35|SYC_HELMI Cysteine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=cysS PE=3 SV=1
Length = 481
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/426 (41%), Positives = 251/426 (58%), Gaps = 27/426 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RA ++GE+P++++ R+ +EY D L P T P+VS HM +I MI ++
Sbjct: 74 KIIHRAKEIGEDPIAMAARFVEEYYRDAKALNVRPATIHPKVSAHMAEIIAMIGVLVEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY + GDV+F++ +YG+LSG+ LE+ +AG RV V+ RKR+P DFALWK AK GEPS
Sbjct: 134 HAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVNERKRHPMDFALWKGAKPGEPS 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS- 180
WDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIAQS A S ++
Sbjct: 194 WDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIFPHHENEIAQSEACTGTSPMAR 253
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YW+HNG +T N EKMSKSLGNFFT+R+I +R+ +R +L+S HYRSP+++ +L++A
Sbjct: 254 YWLHNGFITVNQEKMSKSLGNFFTLREILKRFPGDVIRFYLLSTHYRSPIDFDDSKLEAA 313
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-----EDCINKLRDEFHARMSDDLNT 295
+ + + + E AL+ GK PA E+ + F M DD NT
Sbjct: 314 QKGLQRLRTSRRLIEEALAA---SGKEGAERPAGQREKLEEQWLAAKKGFREAMDDDFNT 370
Query: 296 SHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAY 355
+ L+ F D + N+ L+ P+ +QL L ++ +E+ +LG+
Sbjct: 371 ALALSMLF-DLAREANTFLHGGFALTPEDRQLLL-----QVAETFEELAGVLGI------ 418
Query: 356 SEVLQQLKDKALKRAELTEEDVLQ-LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
L A + T + ++ LI RA ARK KD++ +D+IR L GI + D
Sbjct: 419 -----DLAGGAAAADDNTVDGLMNLLIGIRAEARKKKDWATADRIRDGLKELGIVIEDTP 473
Query: 415 KETIWR 420
+ W+
Sbjct: 474 QGARWK 479
>sp|Q5JD45|SYC_PYRKO Cysteine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=cysS PE=3 SV=1
Length = 476
Score = 315 bits (808), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 174/421 (41%), Positives = 236/421 (56%), Gaps = 24/421 (5%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE+P L+ ++ + +L DM L+ P PRV++H++ I D I ++
Sbjct: 74 KIIKRANETGEDPKELAEKFLKYFLEDMKALKVKPADIYPRVTEHIQDIIDFIRKLQEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+F V K +YG+LS +LE+ G RV K+NP DFALWK AK GEP
Sbjct: 134 YAYEGSDGVYFEVRKFKDYGKLSKVKLEDLVKGARVEPGEGKKNPEDFALWKKAKPGEPK 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECS MS YL FDIHGGG DLIFPHHENEIAQ+ A V Y
Sbjct: 194 WESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIFPHHENEIAQTEACTGHEWVRY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMH G + N EKMSKSLGNF TIR+ ERY P +R F++ HYRSPL+Y+ L+ A
Sbjct: 254 WMHTGFLMVNGEKMSKSLGNFVTIREALERYDPEVIRLFVLQRHYRSPLDYTEEGLEHAK 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ + +Y TL++ VA+ + K A + I R +F+ M DD NT+ L
Sbjct: 314 NNLERLYNTLENIRVAMERAEISFKWGEEEFEAYEAIRDGRKKFYDAMDDDFNTAEALKA 373
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
F+ + IN L ++K PK+ LRK K V + G+
Sbjct: 374 VFEVS-NAINRYLTQVEK--PKES------ILRKAWEFFKMVSEVFGIF----------- 413
Query: 362 LKDKALKRAELTEEDVL--QLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 419
+ + + EE+ L LI+ RA RK + F +D+IR +L GI L D + T+W
Sbjct: 414 --EDYFREQKAGEEEALIKLLIDVRAQLRKERKFDLADKIRDELRNLGIQLEDTPQGTVW 471
Query: 420 R 420
+
Sbjct: 472 K 472
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 315 bits (807), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 181/422 (42%), Positives = 248/422 (58%), Gaps = 32/422 (7%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRA + E +L+ RY Q D A L + P+++PR ++ +E + MI +++
Sbjct: 73 KIIRRALENHEPFGALTARYIQAMEEDAAALGIISPSFEPRATECIESMVTMIESLLSKG 132
Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV GDVF+ V + P YG+LSG+ L++ RAGERV +D+ KR+P DF LWKAAK EP
Sbjct: 133 LAYVANNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRDPLDFVLWKAAKPDEP 192
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SWDSPWG GRPGWHIECSAMS HYL +FDIHGGG DL FPHHENEIAQS +V+
Sbjct: 193 SWDSPWGKGRPGWHIECSAMSGHYLGERFDIHGGGQDLQFPHHENEIAQSEGVHGHPHVN 252
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMHNG V +NEKMSKSLGNFFT+R++ RY P +R F++ AHYRSPLNYS L+ A
Sbjct: 253 YWMHNGFVRVDNEKMSKSLGNFFTVREVLARYQPEVVRFFIVRAHYRSPLNYSDAHLNDA 312
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINK-LRDEFHARMSDDLNTSHIL 299
+A+ +Y L++ + + + A A D +N F A M+DD NT +
Sbjct: 313 RNALERLYTALKNHAPSQA------QAAEEATATIDWVNDGYAQRFMAAMNDDFNTPEAV 366
Query: 300 TGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVL 359
F A + + SL+++L ILGLL
Sbjct: 367 AVLFDLASE---------ANRTGNSHYASLLKALGG----------ILGLLQ----QSPR 403
Query: 360 QQLKDKALKRAE-LTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
Q L+ A + + + E++ ++I++R ARK K+F+++D +R L GI L D + T
Sbjct: 404 QYLQHPAHPQNDHHSIEEIERMIQQRLQARKEKNFAQADALRQQLAEAGIILEDGPQGTT 463
Query: 419 WR 420
WR
Sbjct: 464 WR 465
>sp|Q18CD5|SYC_CLOD6 Cysteine--tRNA ligase OS=Clostridium difficile (strain 630) GN=cysS
PE=3 SV=2
Length = 465
Score = 314 bits (805), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 169/419 (40%), Positives = 246/419 (58%), Gaps = 27/419 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II R+++ G +P ++ +Y +EY VD L T P+V+D+++QI + I ++ +
Sbjct: 72 KIINRSHEEGISPEEVAAKYIKEYFVDCDGLGIKRATVHPQVTDNIQQIIEFIKELEDKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V GDV+F K YG+LSGQ+ E+ AG R+ V+ +KR+P DF LWKA K GEP
Sbjct: 132 YAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQKRHPMDFVLWKAKKEGEPG 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECS MS YL DIH GG DL FPHHENEIAQS A + Y
Sbjct: 192 WDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPHHENEIAQSEARSGKTFSKY 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHNG++ N+EKMSKS GNFFT+R I++ Y +R F++SAHYR+P+N+S L+ A
Sbjct: 252 WMHNGYININDEKMSKSKGNFFTVRDISKLYDLEIVRFFMLSAHYRNPVNFSDEMLNQAK 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ +Y T + E LS E T + ++ ++ R +F M DD+NT+ ++
Sbjct: 312 AGLERLYNTKEKLEFTLSNLVESPLTEKEVELVKE-LDDFRQKFIDAMDDDVNTADAVSV 370
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
F+ A K INS+++ + S +E +K +E E+ +L ++ +
Sbjct: 371 IFELA-KLINSNVD----------ENSSLEFAKKCLDEFNELTGVLN---------IVNK 410
Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
KD L ++D+ +LI++R A+KNK+F +D IR L GI L D + W+
Sbjct: 411 KKDTVL------DKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTRQGVKWK 463
>sp|Q6FC71|SYC_ACIAD Cysteine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=cysS
PE=3 SV=1
Length = 473
Score = 314 bits (805), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 173/423 (40%), Positives = 253/423 (59%), Gaps = 31/423 (7%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ E L++R+ D A L C P P+ ++++ ++++MI+ +++
Sbjct: 75 KIIKRANENNETIQQLTSRFIDAMNEDAAKLGCAEPDEAPKATEYIGEMQNMISTLVDKG 134
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAG--ERVAVDSRKRNPADFALWKAAKAG 118
AY GDV+F V K YGRLSG++LE+ +AG ERV ++ K++P DF LWK AK
Sbjct: 135 SAYPASNGDVYFEVSKFEKYGRLSGRKLEDMQAGASERVDIEVEKKHPFDFVLWKGAKPN 194
Query: 119 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN 178
EPSW SPWG GRPGWHIECSAMS L + FDIHGGG DL FPHHENEIAQS A+ +
Sbjct: 195 EPSWVSPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLTFPHHENEIAQSEASTGEQY 254
Query: 179 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 238
V+YWMH G + + EKMSKSLGNFFTIR + E++HP +R+F++S+HYRSP+N+S + L
Sbjct: 255 VNYWMHVGFINVDGEKMSKSLGNFFTIRDVMEKFHPEVIRYFIVSSHYRSPVNFSDVALK 314
Query: 239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
A A+ Y + E Q +G+ + +D + + F+ M DD NT
Sbjct: 315 EAKTALTRFYHAFKAYE------QVYGQN---DSTQKD--EQFIERFNIAMRDDFNTPEA 363
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F+ +N LN K+Q +Q +LR + +ILGL+ +V
Sbjct: 364 IAVLFE-----LNRELNRAVKEQQAEQAAIYYVTLRHL-------TQILGLVQ----HDV 407
Query: 359 LQQLK-DKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
+ LK D + L+++++ +I++RA A+K KDFS +D IR L +G+ L D + T
Sbjct: 408 DEFLKSDIGQEVLSLSDDEIQAMIQQRADAKKAKDFSGADAIRQALLDQGVVLEDTRQGT 467
Query: 418 IWR 420
+WR
Sbjct: 468 LWR 470
>sp|O67163|SYC_AQUAE Cysteine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=cysS PE=3
SV=1
Length = 495
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/425 (39%), Positives = 252/425 (59%), Gaps = 14/425 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RA + +++++RY Y VDM +++ P +PRV++H+ +I ++I +++
Sbjct: 74 KIINRAKQECTDFMTIADRYIARYYVDMENIRVRPADVEPRVTEHIPEIIEVIQKLVEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AYVVEGDV+F+V+K +YG+LS + +E AG RV +KR+P DFALWKA+KAGEP+
Sbjct: 134 YAYVVEGDVYFSVKKFKDYGKLSKRDIEELIAGARVEPSEKKRDPLDFALWKASKAGEPA 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWH EC AM +L DIHGGG+DL+FPHHENEIAQ+ A Y
Sbjct: 194 WDSPWGKGRPGWHTECVAMVFKHLGETIDIHGGGLDLVFPHHENEIAQAEAITGKPFARY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHNG VT +KMSKSLGN+ T+R++ +YHP LR ++ HYRSPL++S +++
Sbjct: 254 WMHNGLVTVGGQKMSKSLGNYVTLREVYTKYHPDVLRLLVLFTHYRSPLDFSWEKMEETL 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
A + ++D E+ K +P E + + + F+A +SDD NT L+
Sbjct: 314 KAYERLKNAIEDLELLKKLQVVESKEGGTHPLYEQ-VKEFEENFYASLSDDFNTPEALSH 372
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVL----RILGLLPPGAYSE 357
++ + LN +K K + +++ E L E K +L +I GLL Y E
Sbjct: 373 VYK-----LVGELNKVKNKAYSEGKITDRE-LSAYEFASKSLLNTMKKIFGLL-EDLYPE 425
Query: 358 V-LQQLKDKALKRAELTEEDVLQ-LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGK 415
++++ ++ L+ ++ +E ++Q LIE R ARK K F +D IR L GI L D
Sbjct: 426 CKVERVVERELEAGQVFDEKLIQILIEARNIARKEKVFKVADYIRDKLKELGIVLEDTPA 485
Query: 416 ETIWR 420
T W+
Sbjct: 486 GTKWK 490
>sp|B6YUQ3|SYC_THEON Cysteine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=cysS PE=3 SV=1
Length = 476
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/420 (39%), Positives = 241/420 (57%), Gaps = 22/420 (5%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+IIRRAN+ GE+P L+ ++ + +L DM L+ P PRV++H++ I D + ++
Sbjct: 74 KIIRRANETGEDPKELAEKFLRYFLEDMKALKVKPADIYPRVTEHIQDIIDFVRKLQEKG 133
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+F V K +YG+LSG +LE G RV K+NP DFALWK AK GEP
Sbjct: 134 YAYEGNDGVYFEVRKFKDYGKLSGIKLEELVKGARVEPGEGKKNPEDFALWKKAKPGEPK 193
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWG GRPGWHIECS MS YL FDIHGGG DLIFPHHENEIAQS A V Y
Sbjct: 194 WESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPHHENEIAQSEACTGHEWVRY 253
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+H G V + EKMSKSLGNF TIR++ ++Y P +R F++ HYRSPL+Y+ + A
Sbjct: 254 WLHTGFVMVSGEKMSKSLGNFVTIRELLQKYSPEVIRFFVLQKHYRSPLDYTEEGIQHAK 313
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
+ + +Y TL++ VA+ + + + + R +F+ M DD NT+ L
Sbjct: 314 NNLERLYNTLENIRVAMEKADVAFRWDEEEFELYETVREARKKFYDAMDDDFNTAEALKA 373
Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
F+ +++++N K K ++ L ++L E +I+ SEV
Sbjct: 374 VFE-----VSNAVNRYLTKVEKPKESVLRKAL--------EFFKIV--------SEVFGL 412
Query: 362 LKDKALKRAELTEEDVLQ-LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
+D ++ EE +++ L+ RA RK ++F+ +D+IR +L GI L D + TIW+
Sbjct: 413 FEDYFKEQKAGDEEALIELLVSVRAELRKQRNFTLADKIRDELKALGIQLEDTPQGTIWK 472
>sp|C6BS23|SYC_DESAD Cysteine--tRNA ligase OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=cysS PE=3
SV=1
Length = 485
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/423 (40%), Positives = 244/423 (57%), Gaps = 17/423 (4%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN+ G L+ ++ E+ VDM L L +P+ ++H+ ++ ++ +I D
Sbjct: 72 KIINRANETGVTSTELAEKFIGEFYVDMDKLNILRADIEPKCTEHIPEMIELTQTLIEKD 131
Query: 62 CAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AY GDV+F V +YG+LSG+ +E+ ++G R+ K++P DFALWKAAK GEP
Sbjct: 132 HAYATPSGDVYFKVRSFDDYGKLSGRNIEDLQSGARIQPGEEKQDPLDFALWKAAKPGEP 191
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
SW+SPWG GRPGWH+ECSAMS Y FDIHGGG DL FPHHENEIAQS AA
Sbjct: 192 SWESPWGQGRPGWHLECSAMSEKYFELPFDIHGGGQDLSFPHHENEIAQSEAATGKEMAR 251
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
+W+HNG V N+EKMSKSLGNFFTIR I +++ P LR+FL++ HYRSPL++S L+ A
Sbjct: 252 FWVHNGFVQINSEKMSKSLGNFFTIRDILDKFMPETLRYFLLTMHYRSPLDFSFEALEEA 311
Query: 241 SDAVFYIYQTLQDCEVAL--SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
+ +Y L+ AL S + + + ED D M DD+NT+
Sbjct: 312 EKGIRRVYSALEQTAEALNKSKWSKAALPEEVLAEIEDAEKGWADA----MEDDMNTA-- 365
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK--EVLRILGLLPPGAYS 356
GA I + + ++K ++ + +R +E+ K EVL I P
Sbjct: 366 --GAMGHMFTLIRLAGRIGEEKSWRKSEGGRDAWIRILEDMKKWGEVLGIFTRDP----K 419
Query: 357 EVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKE 416
E L++LK L+R + V +L+ R ARKNKDF++SD+IR +L G+ + D +
Sbjct: 420 EFLEELKLCMLERKGIEVAKVEELVAARQEARKNKDFARSDEIRDELIELGVEVKDTPQG 479
Query: 417 TIW 419
+W
Sbjct: 480 AVW 482
>sp|A3DH43|SYC_CLOTH Cysteine--tRNA ligase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=cysS PE=3 SV=1
Length = 468
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/421 (39%), Positives = 244/421 (57%), Gaps = 31/421 (7%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
++I+RAN+ G L++++ EY VD L T PR +++++ I +MI ++
Sbjct: 72 KMIKRANEEGITVKELADKFINEYFVDAKGLGIKEATVHPRATENIDAIIEMIKKLEEKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY V+GDV+F+ K YG+LS Q LE+ G R+ VD RK++P DFALWKA K GEP+
Sbjct: 132 FAYNVDGDVYFSARKFTEYGKLSHQSLEDLELGARIDVDERKKDPMDFALWKAQKPGEPA 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
WDSPWG GRPGWHIECSAM+ YL DIH GG DL+FPHHENEIAQS AA +
Sbjct: 192 WDSPWGKGRPGWHIECSAMANKYLGETIDIHSGGQDLVFPHHENEIAQSEAANGKPFARF 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
W+HNG + + EKM+KS GNFFT+R I + + +R F++SAHYRSP+N+S L+ A
Sbjct: 252 WLHNGFINVDGEKMAKSKGNFFTVRDIAKTFDYEVIRFFMLSAHYRSPINFSAELLEQAK 311
Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKL---RDEFHARMSDDLNTSHI 298
+ + IY L + E +EH + +I + + N+L + +F M DD+NT+
Sbjct: 312 NGLERIYNCLDNLEY----LKEHAQAEKITDSERELQNRLLGIKAKFIEAMDDDINTADA 367
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F D +K +N+++N + SL SL +KE+ +LG +
Sbjct: 368 IAAIF-DIVKEVNTNINATSNSSKEIIDFSL--SL------IKELGGVLG---------I 409
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
Q+ + K L ++++ +LIE R ARK KD+ +D+IR L GI L D +
Sbjct: 410 AQKSRQKVL------DKEIEELIERRQKARKEKDWKTADEIRDKLKEMGIILEDTPQGVK 463
Query: 419 W 419
W
Sbjct: 464 W 464
>sp|Q3A9P1|SYC_CARHZ Cysteine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=cysS PE=3 SV=1
Length = 465
Score = 312 bits (799), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 245/424 (57%), Gaps = 37/424 (8%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RA + G +P+ L +Y EY D L T P+V++H+ +I +M+ +I
Sbjct: 72 KIINRALEEGISPIELGQKYIIEYFKDADRLGVKRATVHPKVTEHIPEIIEMVKGLIEKG 131
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY VEG+V+FAV+ +YG+LSG+ LE +AG RV VD +K+NP DFALWK AK GEP
Sbjct: 132 YAYEVEGNVYFAVDSFSDYGKLSGRDLEELKAGARVEVDEKKKNPLDFALWKKAKPGEPY 191
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENE+AQS A Y
Sbjct: 192 WESPWGPGRPGWHIECSAMSLKYLGENFDIHGGGADLVFPHHENEVAQSEAFTGKPFARY 251
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHNG +T N EKMSKSLGNFF +R+I E++ +R FL+S HYRSPL++ +L+ A
Sbjct: 252 WMHNGFITVNQEKMSKSLGNFFLVREILEKFPGRVVRFFLLSTHYRSPLDFDDKKLNEAK 311
Query: 242 DAVFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ + +Q+ EV P + ARI E N LRD F+ M DD NT+ +
Sbjct: 312 AALERVDNFVQNLKEVNPLPGE-----ARIE-IQEKITNFLRD-FNEAMEDDFNTAQAMA 364
Query: 301 GAFQDALKFINSSL---NMLK-KKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYS 356
F+ ++F N+ + N+ K+ ++ L++ + IE V E + + P +
Sbjct: 365 SLFE-LVRFGNTQIASGNLTAGDKKLFEEALNVYTQVFGIEFGVLEKIAGEDITP---FV 420
Query: 357 EVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKE 416
E+ LIE RA +K K + +D IR +L ++GI L D K
Sbjct: 421 EL---------------------LIEVRARLKKEKKYDLADFIRDELKKQGIILEDTPKG 459
Query: 417 TIWR 420
W+
Sbjct: 460 VRWK 463
>sp|A3M419|SYC_ACIBT Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain ATCC 17978
/ NCDC KC 755) GN=cysS PE=3 SV=2
Length = 473
Score = 312 bits (799), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/422 (41%), Positives = 251/422 (59%), Gaps = 29/422 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE L+ R+ D A+L CL P P+ +++++Q+++MI ++N
Sbjct: 75 KIIKRANENGETIQQLTTRFIDAMNEDAANLGCLAPDEAPKATEYIDQMQNMIGNLVNKG 134
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAG--ERVAVDSRKRNPADFALWKAAKAG 118
AY GDV+F V K YGRLSG++LE+ +AG ERV V+ K++P DF LWK AK
Sbjct: 135 AAYPASNGDVYFEVTKFEKYGRLSGRKLEDMQAGASERVDVEVEKKHPFDFVLWKHAKEN 194
Query: 119 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN 178
EPSW SPWG GRPGWHIECSAMS L + FDIHGGG DL+FPHHENEIAQS A+ +
Sbjct: 195 EPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFPHHENEIAQSEASTGEQY 254
Query: 179 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 238
V+YWMH G + + EKMSKSLGNFFTIR + E++HP +R+F++S+HYRSP+N+S + L
Sbjct: 255 VNYWMHVGFINVDGEKMSKSLGNFFTIRDVMEKFHPEVIRYFIVSSHYRSPVNFSDVALK 314
Query: 239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
A ++ Y + + + Q +G+T E + F+ M DD NT+
Sbjct: 315 EAKTSLTRFYHSFKAYQ------QVYGQT-----TTEALDQSFIERFNNAMCDDFNTAEA 363
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F+ +N LN K++ Q L +LR + N ILGL+ +
Sbjct: 364 MAVLFE-----LNKELNRAVKEEQADQATVLYSTLRHLTN-------ILGLVQHNVDDFL 411
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
+ AL L++ ++ I++R A+K KDF+K+D IR L +G+ L D + T+
Sbjct: 412 KSDIGQDALA---LSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTRQGTV 468
Query: 419 WR 420
WR
Sbjct: 469 WR 470
>sp|B2HX34|SYC_ACIBC Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain ACICU)
GN=cysS PE=3 SV=1
Length = 473
Score = 312 bits (799), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/422 (41%), Positives = 251/422 (59%), Gaps = 29/422 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE L+ R+ D A+L CL P P+ +++++Q+++MI ++N
Sbjct: 75 KIIKRANENGETIQQLTTRFIDAMNEDAANLGCLAPDEAPKATEYIDQMQNMIGNLVNKG 134
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAG--ERVAVDSRKRNPADFALWKAAKAG 118
AY GDV+F V K YGRLSG++LE+ +AG ERV V+ K++P DF LWK AK
Sbjct: 135 AAYPASNGDVYFEVTKFEKYGRLSGRKLEDMQAGASERVDVEVEKKHPFDFVLWKHAKEN 194
Query: 119 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN 178
EPSW SPWG GRPGWHIECSAMS L + FDIHGGG DL+FPHHENEIAQS A+ +
Sbjct: 195 EPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFPHHENEIAQSEASTGEQY 254
Query: 179 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 238
V+YWMH G + + EKMSKSLGNFFTIR + E++HP +R+F++S+HYRSP+N+S + L
Sbjct: 255 VNYWMHVGFINVDGEKMSKSLGNFFTIRDVMEKFHPEVIRYFIVSSHYRSPVNFSDVALK 314
Query: 239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
A ++ Y + + + Q +G+T E + F+ M DD NT+
Sbjct: 315 EAKTSLTRFYHSFKAYQ------QVYGQT-----TTEALDQSFIERFNNAMCDDFNTAEA 363
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F+ +N LN K++ Q L +LR + N ILGL+ +
Sbjct: 364 MAVLFE-----LNKELNRAVKEEQADQATVLYSTLRHLTN-------ILGLVQHNVDDFL 411
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
+ AL L++ ++ I++R A+K KDF+K+D IR L +G+ L D + T+
Sbjct: 412 KSDIGQDALA---LSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTRQGTV 468
Query: 419 WR 420
WR
Sbjct: 469 WR 470
>sp|Q0HTK4|SYC_SHESR Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=cysS PE=3
SV=1
Length = 461
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/423 (41%), Positives = 238/423 (56%), Gaps = 42/423 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ E+ +L++R E D L + P ++PR + H+ +I DM+ +++
Sbjct: 75 KIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEIIDMVERLLARG 134
Query: 62 CAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF LWK +K GEP
Sbjct: 135 HAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDFVLWKMSKPGEP 194
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQSC A V+
Sbjct: 195 TWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQSCCAHDTPYVN 254
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMH G V + EKMSKSLGNFFTIR + Y P +R+FL+S HYRS +NYS L A
Sbjct: 255 YWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQINYSEENLKQA 314
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y ++D ++ ++P AE+ + K F A M DD NT +
Sbjct: 315 RAALERLYTAIKDVDLTVAP-----------APAEEFVAK----FKAAMDDDFNTPEAYS 359
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F + +N LK Q + +K++ +LGL L
Sbjct: 360 VLFD-----MVREINRLKTTDMAQASAMAV--------AMKQLADVLGL---------LH 397
Query: 361 QLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
Q D A + E ++++V + LI ER AR KD+ +D R L G+ L D T
Sbjct: 398 QAPD-AFFKGEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLEDGPSGT 456
Query: 418 IWR 420
WR
Sbjct: 457 TWR 459
>sp|Q0HH98|SYC_SHESM Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=cysS PE=3
SV=1
Length = 461
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/423 (41%), Positives = 238/423 (56%), Gaps = 42/423 (9%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ E+ +L++R E D L + P ++PR + H+ +I DM+ +++
Sbjct: 75 KIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHITEIIDMVERLLARG 134
Query: 62 CAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120
AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF LWK +K GEP
Sbjct: 135 HAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDFVLWKMSKPGEP 194
Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180
+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQSC A V+
Sbjct: 195 TWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQSCCAHDTPYVN 254
Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240
YWMH G V + EKMSKSLGNFFTIR + Y P +R+FL+S HYRS +NYS L A
Sbjct: 255 YWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQINYSEENLKQA 314
Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300
A+ +Y ++D ++ ++P AE+ + K F A M DD NT +
Sbjct: 315 RAALERLYTAIKDVDLTVAP-----------APAEEFVAK----FKAAMDDDFNTPEAYS 359
Query: 301 GAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
F + +N LK Q + +K++ +LGL L
Sbjct: 360 VLFD-----MVREINRLKTTDMAQASAMAV--------AMKQLADVLGL---------LH 397
Query: 361 QLKDKALKRAELTEEDVLQ---LIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
Q D A + E ++++V + LI ER AR KD+ +D R L G+ L D T
Sbjct: 398 QAPD-AFFKGEGSDDEVAEIEALIVERNRARVEKDWPAADVARNRLNELGVVLEDGPSGT 456
Query: 418 IWR 420
WR
Sbjct: 457 TWR 459
>sp|Q6MKR7|SYC_BDEBA Cysteine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=cysS PE=3 SV=1
Length = 482
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/420 (40%), Positives = 239/420 (56%), Gaps = 16/420 (3%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II RAN+LG +P LS +Y EY D A L P P+V++HM+ I+ M+ +++
Sbjct: 73 KIINRANELGMSPTELSEKYIAEYKKDFASLGLRPHDMNPKVTEHMDDIRSMVESLVSQK 132
Query: 62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
AY +GDV +++E +YG+LSG+ ++ AG RV VD +KRNP DFALWKAAK GE S
Sbjct: 133 KAYEAQGDVLYSIESFKDYGKLSGRNTDDLLAGARVEVDEKKRNPMDFALWKAAKPGEVS 192
Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
W SPWGPGRPGWHIECSAM + + DIHGGG+DLIFPHHENEIAQS + V Y
Sbjct: 193 WPSPWGPGRPGWHIECSAMIKNLFGDQIDIHGGGMDLIFPHHENEIAQSEGCTGKAFVKY 252
Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
WMHN + +KMSKSLGN T+R+ E Y+ + ++SAHYR+ ++ ++ A
Sbjct: 253 WMHNNMLNFGGQKMSKSLGNIVTMREFLEMYNAEIYKWMILSAHYRTLSDFGDEAVERAV 312
Query: 242 DAVFYIYQTLQDCEVALSP--FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL 299
+ +Y L E L+P QE A+I +D K+ + M+ D T
Sbjct: 313 GGLSRVYSALSMAESYLTPEVTQEDAAFAKIT---QDAWKKVEEA----MNHDFGTPDAF 365
Query: 300 TGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVL 359
F+ +F N+ + K P Q +L N V+++ ++ L A++ L
Sbjct: 366 AAMFEVVRQF-NAQVRRGMKANPAIQGKAL-----AFHNFVRKMGSMMSLFQEPAHA-FL 418
Query: 360 QQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 419
+L D LK+ L V L+ ER AR KDF+KSD++RA +T GI++ D + + W
Sbjct: 419 IKLDDMLLKKMNLERSAVDALVAERGEARAAKDFAKSDELRAKITALGISVSDTPEGSFW 478
>sp|B0VAU1|SYC_ACIBY Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain AYE)
GN=cysS PE=3 SV=1
Length = 473
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/422 (40%), Positives = 251/422 (59%), Gaps = 29/422 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE L+ R+ D A+L CL P P+ +++++Q+++MI ++N
Sbjct: 75 KIIKRANENGETIQQLTTRFIDAMNEDAANLGCLAPDEAPKATEYIDQMQNMIGNLVNKG 134
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAG--ERVAVDSRKRNPADFALWKAAKAG 118
AY GDV+F V K YGRLSG++L++ +AG ER+ V+ K++P DF LWK AK
Sbjct: 135 AAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERIDVEVEKKHPFDFVLWKHAKEN 194
Query: 119 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN 178
EPSW SPWG GRPGWHIECSAMS L + FDIHGGG DL+FPHHENEIAQS A+ +
Sbjct: 195 EPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFPHHENEIAQSEASTGEQY 254
Query: 179 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 238
V+YWMH G + + EKMSKSLGNFFTIR + E++HP +R+F++S+HYRSP+N+S + L
Sbjct: 255 VNYWMHVGFINVDGEKMSKSLGNFFTIRDVMEKFHPEVIRYFIVSSHYRSPVNFSDVALK 314
Query: 239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
A ++ Y + + + Q +G+T E + F+ M DD NT+
Sbjct: 315 EAKTSLTRFYHSFKAYQ------QVYGQT-----TTEALDQSFIERFNNAMCDDFNTAEA 363
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F+ +N LN K++ Q L +LR + N ILGL+ +
Sbjct: 364 MAVLFE-----LNKELNRAVKEEQADQATVLYSTLRHLTN-------ILGLVQHNVDDFL 411
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
+ AL L++ ++ I++R A+K KDF+K+D IR L +G+ L D + T+
Sbjct: 412 KSDIGQDALA---LSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTRQGTV 468
Query: 419 WR 420
WR
Sbjct: 469 WR 470
>sp|B7IBU3|SYC_ACIB5 Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain AB0057)
GN=cysS PE=3 SV=1
Length = 473
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/422 (40%), Positives = 251/422 (59%), Gaps = 29/422 (6%)
Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
+II+RAN+ GE L+ R+ D A+L CL P P+ +++++Q+++MI ++N
Sbjct: 75 KIIKRANENGETIQQLTTRFIDAMNEDAANLGCLAPDEAPKATEYIDQMQNMIGNLVNKG 134
Query: 62 CAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAG--ERVAVDSRKRNPADFALWKAAKAG 118
AY GDV+F V K YGRLSG++L++ +AG ER+ V+ K++P DF LWK AK
Sbjct: 135 AAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERIDVEVEKKHPFDFVLWKHAKEN 194
Query: 119 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN 178
EPSW SPWG GRPGWHIECSAMS L + FDIHGGG DL+FPHHENEIAQS A+ +
Sbjct: 195 EPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFPHHENEIAQSEASTGEQY 254
Query: 179 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 238
V+YWMH G + + EKMSKSLGNFFTIR + E++HP +R+F++S+HYRSP+N+S + L
Sbjct: 255 VNYWMHVGFINVDGEKMSKSLGNFFTIRDVMEKFHPEVIRYFIVSSHYRSPVNFSDVALK 314
Query: 239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298
A ++ Y + + + Q +G+T E + F+ M DD NT+
Sbjct: 315 EAKTSLTRFYHSFKAYQ------QVYGQT-----TTEALDQSFIERFNNAMCDDFNTAEA 363
Query: 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 358
+ F+ +N LN K++ Q L +LR + N ILGL+ +
Sbjct: 364 MAVLFE-----LNKELNRAVKEEQADQATVLYSTLRHLTN-------ILGLVQHNVDDFL 411
Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418
+ AL L++ ++ I++R A+K KDF+K+D IR L +G+ L D + T+
Sbjct: 412 KSDIGQDALA---LSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTRQGTV 468
Query: 419 WR 420
WR
Sbjct: 469 WR 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,912,156
Number of Sequences: 539616
Number of extensions: 6955623
Number of successful extensions: 27273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 24018
Number of HSP's gapped (non-prelim): 1288
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)