Query 013130
Match_columns 449
No_of_seqs 289 out of 2496
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 00:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 5E-109 1E-113 825.5 37.0 383 2-421 73-463 (464)
2 PLN02946 cysteine-tRNA ligase 100.0 3E-104 7E-109 819.3 40.7 423 1-429 130-553 (557)
3 PRK14535 cysS cysteinyl-tRNA s 100.0 8E-100 2E-104 789.2 40.3 384 1-421 298-698 (699)
4 PRK14536 cysS cysteinyl-tRNA s 100.0 6.1E-98 1E-102 765.6 41.5 395 1-421 83-489 (490)
5 PRK14534 cysS cysteinyl-tRNA s 100.0 1.7E-96 4E-101 751.2 41.1 394 1-421 81-480 (481)
6 PRK00260 cysS cysteinyl-tRNA s 100.0 1.2E-95 3E-100 756.0 42.7 390 1-421 73-462 (463)
7 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.3E-95 3E-100 776.3 38.5 426 1-440 111-571 (651)
8 TIGR00435 cysS cysteinyl-tRNA 100.0 3.2E-93 6.9E-98 736.4 41.0 393 1-421 71-465 (465)
9 KOG2007 Cysteinyl-tRNA synthet 100.0 3.4E-92 7.3E-97 693.6 28.2 401 2-425 107-525 (586)
10 PRK12418 cysteinyl-tRNA synthe 100.0 2.7E-84 5.8E-89 647.4 28.0 298 1-318 59-366 (384)
11 TIGR03447 mycothiol_MshC cyste 100.0 1.4E-83 3.1E-88 644.6 26.5 292 1-312 86-387 (411)
12 PF01406 tRNA-synt_1e: tRNA sy 100.0 7.3E-84 1.6E-88 616.2 17.0 241 2-242 59-300 (300)
13 KOG0436 Methionyl-tRNA synthet 100.0 3.2E-59 6.8E-64 451.0 25.6 342 1-350 90-509 (578)
14 COG0143 MetG Methionyl-tRNA sy 100.0 1.6E-57 3.5E-62 471.4 32.9 354 1-363 56-511 (558)
15 PLN02224 methionine-tRNA ligas 100.0 1.4E-51 3.1E-56 435.9 34.0 355 1-362 120-544 (616)
16 PLN02610 probable methionyl-tR 100.0 5.9E-51 1.3E-55 442.9 33.8 358 1-363 69-531 (801)
17 PRK11893 methionyl-tRNA synthe 100.0 6.5E-51 1.4E-55 430.2 30.5 347 1-362 52-474 (511)
18 PRK12267 methionyl-tRNA synthe 100.0 8.8E-50 1.9E-54 431.0 33.7 354 1-363 55-477 (648)
19 PRK00133 metG methionyl-tRNA s 100.0 2E-48 4.3E-53 421.2 32.4 355 1-363 53-502 (673)
20 TIGR00398 metG methionyl-tRNA 100.0 1.4E-46 3.1E-51 398.3 33.7 354 1-362 50-501 (530)
21 PRK12268 methionyl-tRNA synthe 100.0 1.5E-44 3.3E-49 384.9 34.2 357 1-362 55-508 (556)
22 cd00668 Ile_Leu_Val_MetRS_core 100.0 5.2E-43 1.1E-47 347.3 15.3 220 1-232 51-312 (312)
23 cd00672 CysRS_core catalytic c 100.0 8.3E-42 1.8E-46 318.3 15.9 144 1-233 70-213 (213)
24 PF09334 tRNA-synt_1g: tRNA sy 100.0 2.4E-41 5.1E-46 343.1 17.5 246 1-251 50-390 (391)
25 PRK13208 valS valyl-tRNA synth 100.0 1.5E-37 3.1E-42 343.0 26.3 212 147-363 485-705 (800)
26 TIGR00422 valS valyl-tRNA synt 100.0 5.9E-37 1.3E-41 340.5 26.2 213 147-363 477-699 (861)
27 cd00814 MetRS_core catalytic c 100.0 1.4E-37 3.1E-42 309.0 16.8 227 1-232 51-319 (319)
28 PRK05729 valS valyl-tRNA synth 100.0 3.7E-35 8E-40 326.1 29.0 210 147-363 472-692 (874)
29 TIGR00395 leuS_arch leucyl-tRN 100.0 6.7E-33 1.4E-37 308.9 31.5 202 147-363 572-777 (938)
30 cd00812 LeuRS_core catalytic c 100.0 4.4E-35 9.6E-40 290.3 12.4 222 1-234 51-314 (314)
31 PRK14900 valS valyl-tRNA synth 100.0 7E-33 1.5E-37 310.7 26.6 212 147-363 490-714 (1052)
32 PRK05743 ileS isoleucyl-tRNA s 100.0 1.1E-32 2.5E-37 306.2 27.5 212 147-363 544-769 (912)
33 PLN02943 aminoacyl-tRNA ligase 100.0 4.2E-32 9E-37 302.4 29.6 213 147-363 535-770 (958)
34 cd00817 ValRS_core catalytic c 100.0 5.1E-33 1.1E-37 282.4 15.2 226 1-232 52-382 (382)
35 KOG1247 Methionyl-tRNA synthet 100.0 1.9E-31 4.1E-36 258.1 18.9 359 1-363 66-519 (567)
36 PRK06039 ileS isoleucyl-tRNA s 100.0 1.1E-30 2.4E-35 292.4 26.9 212 147-363 544-771 (975)
37 PTZ00419 valyl-tRNA synthetase 100.0 1E-30 2.2E-35 293.8 23.9 213 147-363 537-804 (995)
38 cd00818 IleRS_core catalytic c 100.0 3.5E-31 7.7E-36 264.7 13.2 227 1-232 52-338 (338)
39 COG0525 ValS Valyl-tRNA synthe 100.0 7.5E-30 1.6E-34 272.5 20.5 231 126-364 459-699 (877)
40 PRK01611 argS arginyl-tRNA syn 100.0 2.4E-29 5.2E-34 264.4 21.2 304 2-352 163-504 (507)
41 PRK00390 leuS leucyl-tRNA synt 100.0 2E-28 4.4E-33 269.2 29.0 191 147-362 522-721 (805)
42 PLN02843 isoleucyl-tRNA synthe 100.0 5.1E-29 1.1E-33 277.8 20.6 213 147-363 563-796 (974)
43 PLN02882 aminoacyl-tRNA ligase 100.0 3.9E-29 8.4E-34 281.8 19.8 214 147-364 566-801 (1159)
44 PRK12300 leuS leucyl-tRNA synt 100.0 4E-29 8.7E-34 277.5 19.2 199 147-363 529-731 (897)
45 PRK13804 ileS isoleucyl-tRNA s 100.0 1.3E-28 2.8E-33 274.6 21.4 214 146-363 581-807 (961)
46 TIGR00396 leuS_bact leucyl-tRN 100.0 9.2E-28 2E-32 264.6 25.6 195 147-362 519-757 (842)
47 TIGR00392 ileS isoleucyl-tRNA 99.9 5.8E-27 1.3E-31 260.9 20.7 210 147-363 563-790 (861)
48 PLN02563 aminoacyl-tRNA ligase 99.9 4.4E-26 9.6E-31 252.1 25.3 193 147-362 615-873 (963)
49 PTZ00427 isoleucine-tRNA ligas 99.9 2.6E-26 5.7E-31 258.2 21.5 212 147-363 672-905 (1205)
50 PLN02381 valyl-tRNA synthetase 99.9 3E-26 6.6E-31 257.0 19.3 213 147-363 607-871 (1066)
51 COG0060 IleS Isoleucyl-tRNA sy 99.9 7E-26 1.5E-30 244.9 17.1 210 150-363 557-779 (933)
52 TIGR00456 argS arginyl-tRNA sy 99.9 7E-24 1.5E-28 225.6 26.5 293 14-352 230-563 (566)
53 PLN02959 aminoacyl-tRNA ligase 99.9 1.8E-23 4E-28 235.3 22.3 202 147-362 670-877 (1084)
54 KOG0432 Valyl-tRNA synthetase 99.9 2.1E-22 4.6E-27 211.0 17.8 230 126-362 527-806 (995)
55 COG0495 LeuS Leucyl-tRNA synth 99.9 2.1E-21 4.5E-26 208.7 18.4 196 147-363 525-732 (814)
56 PRK12451 arginyl-tRNA syntheta 99.9 3.4E-20 7.4E-25 196.8 25.1 293 14-352 229-559 (562)
57 cd07963 Anticodon_Ia_Cys Antic 99.8 1.5E-19 3.2E-24 161.4 17.7 155 235-421 2-156 (156)
58 KOG0433 Isoleucyl-tRNA synthet 99.8 7.2E-20 1.6E-24 188.7 17.2 210 148-362 566-795 (937)
59 COG0018 ArgS Arginyl-tRNA synt 99.8 4.6E-18 1E-22 178.8 25.9 297 14-352 234-574 (577)
60 cd00674 LysRS_core_class_I cat 99.8 1E-18 2.3E-23 173.8 17.7 225 2-250 88-331 (353)
61 PRK00750 lysK lysyl-tRNA synth 99.8 1.1E-18 2.3E-23 182.9 14.3 215 14-251 105-336 (510)
62 PLN02286 arginine-tRNA ligase 99.8 6.4E-17 1.4E-21 172.1 27.4 290 14-352 234-573 (576)
63 KOG0435 Leucyl-tRNA synthetase 99.7 4.9E-16 1.1E-20 159.4 23.2 166 148-315 527-744 (876)
64 PF00133 tRNA-synt_1: tRNA syn 99.7 1.8E-17 3.9E-22 177.9 7.6 86 147-233 513-601 (601)
65 TIGR00467 lysS_arch lysyl-tRNA 99.7 3.3E-16 7.2E-21 163.2 15.7 218 5-252 90-331 (515)
66 KOG0434 Isoleucyl-tRNA synthet 99.7 4.1E-16 8.8E-21 159.9 15.2 213 147-363 553-784 (1070)
67 PRK04156 gltX glutamyl-tRNA sy 99.7 2.2E-16 4.9E-21 164.9 11.2 208 17-242 150-403 (567)
68 KOG0437 Leucyl-tRNA synthetase 99.6 5.6E-16 1.2E-20 160.1 7.9 158 147-308 662-824 (1080)
69 cd00671 ArgRS_core catalytic c 99.6 6.9E-15 1.5E-19 137.9 14.2 153 2-200 52-212 (212)
70 PF01921 tRNA-synt_1f: tRNA sy 99.3 9.3E-12 2E-16 123.0 10.7 211 15-250 105-339 (360)
71 PF00750 tRNA-synt_1d: tRNA sy 99.2 4.6E-11 9.9E-16 120.5 9.5 177 14-234 139-354 (354)
72 COG1384 LysS Lysyl-tRNA synthe 99.2 9.7E-11 2.1E-15 119.0 10.8 210 14-249 101-333 (521)
73 cd00802 class_I_aaRS_core cata 99.1 2.9E-10 6.2E-15 99.9 9.2 65 133-199 78-143 (143)
74 cd07962 Anticodon_Ia_Val Antic 98.9 3E-08 6.6E-13 86.1 13.3 119 232-352 1-126 (135)
75 cd07957 Anticodon_Ia_Met Antic 98.8 1.1E-07 2.5E-12 81.3 12.7 115 241-358 6-125 (129)
76 cd07960 Anticodon_Ia_Ile_BEm A 98.7 3.3E-07 7.1E-12 83.7 13.5 129 232-363 1-140 (180)
77 cd09287 GluRS_non_core catalyt 98.7 3.2E-07 7E-12 86.7 12.8 163 17-240 50-229 (240)
78 TIGR00464 gltX_bact glutamyl-t 98.7 5.9E-07 1.3E-11 93.8 15.9 202 12-238 43-309 (470)
79 PLN03233 putative glutamate-tR 98.6 4.3E-07 9.3E-12 94.6 13.4 218 12-242 53-311 (523)
80 PRK05347 glutaminyl-tRNA synth 98.6 8.3E-07 1.8E-11 92.9 13.8 220 12-242 71-335 (554)
81 cd07958 Anticodon_Ia_Leu_BEm A 98.6 1E-06 2.2E-11 73.9 11.7 111 232-357 1-112 (117)
82 PRK01406 gltX glutamyl-tRNA sy 98.5 1.6E-06 3.4E-11 90.7 15.0 183 12-223 46-280 (476)
83 PRK12558 glutamyl-tRNA synthet 98.5 7E-07 1.5E-11 91.9 11.5 200 12-240 44-288 (445)
84 TIGR00463 gltX_arch glutamyl-t 98.5 9.5E-07 2.1E-11 93.0 11.7 214 13-242 136-394 (560)
85 cd07959 Anticodon_Ia_Leu_AEc A 98.5 3.5E-06 7.6E-11 70.8 12.8 111 232-358 1-113 (117)
86 PRK14703 glutaminyl-tRNA synth 98.5 3.1E-06 6.6E-11 92.4 15.2 220 12-242 73-338 (771)
87 cd07375 Anticodon_Ia_like Anti 98.4 3.4E-06 7.4E-11 70.4 12.2 109 236-348 3-114 (117)
88 PRK14895 gltX glutamyl-tRNA sy 98.4 9.4E-06 2E-10 84.7 17.0 211 12-240 46-288 (513)
89 PRK12410 glutamylglutaminyl-tR 98.4 3.7E-06 7.9E-11 86.2 13.6 199 12-239 41-281 (433)
90 PTZ00437 glutaminyl-tRNA synth 98.4 3.2E-06 6.8E-11 88.6 12.8 210 12-242 93-351 (574)
91 PLN02907 glutamate-tRNA ligase 98.4 4E-06 8.8E-11 91.5 13.7 218 12-242 255-513 (722)
92 PTZ00402 glutamyl-tRNA synthet 98.4 5.9E-06 1.3E-10 87.3 14.1 219 12-242 94-353 (601)
93 cd07956 Anticodon_Ia_Arg Antic 98.3 1.6E-05 3.5E-10 70.8 13.0 140 211-352 2-153 (156)
94 cd00808 GluRS_core catalytic c 98.3 2.4E-05 5.3E-10 74.2 14.8 151 14-238 45-209 (239)
95 PF09190 DALR_2: DALR domain; 98.3 3.5E-06 7.5E-11 63.1 7.2 57 284-352 1-57 (63)
96 cd00418 GlxRS_core catalytic c 98.3 1.8E-05 3.9E-10 74.6 13.5 138 12-224 43-183 (230)
97 TIGR00440 glnS glutaminyl-tRNA 98.2 1.1E-05 2.4E-10 84.3 12.9 217 12-242 42-306 (522)
98 cd07961 Anticodon_Ia_Ile_ABEc 98.2 3E-05 6.4E-10 70.9 13.5 128 232-363 1-141 (183)
99 cd00807 GlnRS_core catalytic c 98.1 3.9E-05 8.5E-10 72.4 13.0 169 11-240 42-227 (238)
100 PLN02859 glutamine-tRNA ligase 98.1 2.6E-05 5.7E-10 84.5 13.2 215 12-239 306-562 (788)
101 KOG1195 Arginyl-tRNA synthetas 98.0 0.0012 2.5E-08 67.6 21.3 292 14-352 226-564 (567)
102 COG0008 GlnS Glutamyl- and glu 98.0 3.5E-05 7.6E-10 79.9 10.2 206 12-240 51-300 (472)
103 PLN02627 glutamyl-tRNA synthet 98.0 6.7E-05 1.5E-09 78.6 12.2 200 12-240 87-342 (535)
104 smart00840 DALR_2 This DALR do 97.9 2.6E-05 5.5E-10 56.7 5.9 54 285-349 2-55 (56)
105 PRK05710 glutamyl-Q tRNA(Asp) 97.9 8.7E-05 1.9E-09 72.7 10.7 179 12-223 47-261 (299)
106 TIGR03838 queuosine_YadB gluta 97.9 4.1E-05 8.9E-10 74.1 8.1 53 13-65 43-95 (272)
107 PF08264 Anticodon_1: Anticodo 97.9 5E-05 1.1E-09 67.0 7.7 88 271-362 1-92 (153)
108 KOG4426 Arginyl-tRNA synthetas 97.8 0.014 3.1E-07 58.7 23.5 292 14-352 304-653 (656)
109 PF00749 tRNA-synt_1c: tRNA sy 97.5 0.001 2.2E-08 66.2 11.6 185 13-223 44-274 (314)
110 COG0495 LeuS Leucyl-tRNA synth 97.4 0.00056 1.2E-08 75.1 8.6 75 1-76 85-163 (814)
111 cd07955 Anticodon_Ia_Cys_like 97.1 0.0026 5.5E-08 50.1 7.7 58 235-312 2-60 (81)
112 PLN02882 aminoacyl-tRNA ligase 96.9 0.0029 6.3E-08 73.1 8.4 62 14-76 119-184 (1159)
113 KOG1149 Glutamyl-tRNA syntheta 96.8 0.0093 2E-07 60.1 10.3 193 17-241 80-331 (524)
114 PF05746 DALR_1: DALR anticodo 96.6 0.011 2.3E-07 49.8 8.1 80 271-352 35-116 (119)
115 TIGR00392 ileS isoleucyl-tRNA 96.5 0.0073 1.6E-07 68.3 8.3 76 1-76 87-182 (861)
116 PLN02843 isoleucyl-tRNA synthe 96.4 0.01 2.2E-07 67.7 8.7 67 10-76 99-175 (974)
117 cd00805 TyrRS_core catalytic c 96.4 0.0056 1.2E-07 59.5 5.5 69 149-223 152-221 (269)
118 KOG2007 Cysteinyl-tRNA synthet 96.2 0.011 2.5E-07 60.5 7.0 51 375-425 526-576 (586)
119 cd00395 Tyr_Trp_RS_core cataly 96.2 0.013 2.8E-07 57.1 7.1 74 148-225 153-227 (273)
120 TIGR00233 trpS tryptophanyl-tR 96.2 0.015 3.2E-07 58.2 7.4 70 147-223 138-217 (328)
121 PRK13354 tyrosyl-tRNA syntheta 96.1 0.0061 1.3E-07 62.8 4.6 73 147-224 185-258 (410)
122 PRK05912 tyrosyl-tRNA syntheta 96.0 0.0062 1.4E-07 62.7 4.3 73 147-224 187-260 (408)
123 PTZ00427 isoleucine-tRNA ligas 96.0 0.011 2.4E-07 68.4 6.6 62 14-76 183-248 (1205)
124 PLN02381 valyl-tRNA synthetase 96.0 0.016 3.6E-07 66.6 7.6 60 16-76 211-274 (1066)
125 PRK12300 leuS leucyl-tRNA synt 95.6 0.027 5.9E-07 63.9 7.2 63 13-76 73-139 (897)
126 PRK12284 tryptophanyl-tRNA syn 95.5 0.11 2.4E-06 53.4 10.7 71 147-223 147-226 (431)
127 PRK13804 ileS isoleucyl-tRNA s 95.4 0.049 1.1E-06 62.2 8.4 61 15-76 135-199 (961)
128 PRK12556 tryptophanyl-tRNA syn 95.1 0.015 3.3E-07 58.1 3.1 59 148-207 149-215 (332)
129 smart00836 DALR_1 DALR anticod 95.1 0.22 4.8E-06 41.9 9.8 80 271-352 38-119 (122)
130 PTZ00126 tyrosyl-tRNA syntheta 94.6 0.038 8.3E-07 56.3 4.5 70 147-223 209-282 (383)
131 PF00133 tRNA-synt_1: tRNA syn 94.4 0.089 1.9E-06 57.1 6.9 63 14-77 104-170 (601)
132 PRK12282 tryptophanyl-tRNA syn 94.2 0.58 1.2E-05 47.0 11.8 70 148-223 142-220 (333)
133 PF00579 tRNA-synt_1b: tRNA sy 94.2 0.019 4.1E-07 56.5 1.1 69 148-223 149-223 (292)
134 PRK08560 tyrosyl-tRNA syntheta 94.0 0.04 8.7E-07 55.2 3.0 69 147-223 167-239 (329)
135 cd00806 TrpRS_core catalytic c 93.3 0.073 1.6E-06 52.1 3.5 69 148-223 137-216 (280)
136 PRK12283 tryptophanyl-tRNA syn 93.3 0.062 1.3E-06 54.7 3.0 33 186-223 255-288 (398)
137 PRK00927 tryptophanyl-tRNA syn 93.2 0.064 1.4E-06 53.8 2.9 70 148-223 138-220 (333)
138 PRK12285 tryptophanyl-tRNA syn 93.0 0.052 1.1E-06 55.1 1.9 69 147-223 202-276 (368)
139 COG0180 TrpS Tryptophanyl-tRNA 91.7 0.15 3.3E-06 50.3 3.3 66 140-207 137-212 (314)
140 KOG1147 Glutamyl-tRNA syntheta 91.5 0.27 5.9E-06 51.1 5.0 55 12-67 242-296 (712)
141 COG0162 TyrS Tyrosyl-tRNA synt 90.9 0.14 3E-06 52.4 2.1 51 148-201 180-231 (401)
142 TIGR00234 tyrS tyrosyl-tRNA sy 90.6 0.2 4.3E-06 51.1 3.1 57 148-207 177-234 (377)
143 COG0060 IleS Isoleucyl-tRNA sy 90.3 0.49 1.1E-05 53.2 6.0 62 14-76 129-194 (933)
144 PTZ00348 tyrosyl-tRNA syntheta 89.9 0.32 7E-06 53.1 4.1 59 147-207 174-236 (682)
145 PLN02959 aminoacyl-tRNA ligase 89.0 0.7 1.5E-05 53.6 6.2 63 13-76 182-250 (1084)
146 COG0525 ValS Valyl-tRNA synthe 88.7 0.94 2E-05 50.5 6.6 62 14-76 113-178 (877)
147 PLN02486 aminoacyl-tRNA ligase 88.7 0.38 8.1E-06 49.1 3.3 62 154-223 225-290 (383)
148 PLN02886 aminoacyl-tRNA ligase 87.7 2.2 4.7E-05 43.6 8.1 25 147-172 183-207 (389)
149 COG3340 PepE Peptidase E [Amin 68.9 7.4 0.00016 36.2 4.3 50 19-72 48-97 (224)
150 PF00392 GntR: Bacterial regul 61.8 45 0.00099 24.3 6.8 54 19-72 3-63 (64)
151 PF02151 UVR: UvrB/uvrC motif; 61.5 15 0.00033 23.8 3.6 30 376-405 3-32 (36)
152 KOG2144 Tyrosyl-tRNA synthetas 58.9 5.8 0.00013 38.5 1.8 51 144-201 175-229 (360)
153 KOG0433 Isoleucyl-tRNA synthet 57.2 24 0.00052 38.8 6.1 60 16-76 135-198 (937)
154 KOG1148 Glutaminyl-tRNA synthe 56.5 22 0.00048 38.0 5.6 53 12-65 290-342 (764)
155 KOG0434 Isoleucyl-tRNA synthet 43.0 50 0.0011 36.2 5.7 61 14-75 119-183 (1070)
156 cd07377 WHTH_GntR Winged helix 34.4 1.7E+02 0.0036 20.7 6.8 26 47-72 39-64 (66)
157 PF03295 Pox_TAA1: Poxvirus tr 32.4 70 0.0015 23.4 3.4 28 45-75 24-51 (63)
158 PF07393 Sec10: Exocyst comple 31.8 2.5E+02 0.0055 31.2 9.5 96 278-391 611-706 (710)
159 COG3110 Uncharacterized protei 31.6 24 0.00052 32.4 1.2 18 186-203 30-47 (216)
160 smart00345 HTH_GNTR helix_turn 29.3 1.9E+02 0.0042 19.8 6.0 25 48-72 35-59 (60)
161 PF10007 DUF2250: Uncharacteri 29.0 62 0.0013 26.0 3.0 47 24-70 11-58 (92)
162 KOG2623 Tyrosyl-tRNA synthetas 29.0 66 0.0014 32.8 3.8 55 147-206 226-285 (467)
163 KOG2713 Mitochondrial tryptoph 27.5 86 0.0019 30.7 4.1 42 193-236 210-253 (347)
164 PRK01233 glyS glycyl-tRNA synt 27.1 3.2E+02 0.0069 30.4 9.0 46 271-318 603-648 (682)
165 KOG0432 Valyl-tRNA synthetase 26.5 1E+02 0.0023 34.7 5.1 59 14-74 156-219 (995)
166 COG1725 Predicted transcriptio 24.6 2.9E+02 0.0062 23.6 6.4 52 23-74 18-76 (125)
167 COG2200 Rtn c-di-GMP phosphodi 23.9 1.3E+02 0.0028 28.7 4.9 64 11-74 93-164 (256)
168 PF01402 RHH_1: Ribbon-helix-h 23.7 1.4E+02 0.0031 19.1 3.6 26 2-27 13-38 (39)
169 PF01726 LexA_DNA_bind: LexA D 23.4 1.3E+02 0.0028 22.3 3.7 35 24-68 27-61 (65)
170 PF08671 SinI: Anti-repressor 23.3 1.1E+02 0.0024 19.1 2.7 19 2-20 7-25 (30)
171 KOG3745 Exocyst subunit - Sec1 22.1 4.3E+02 0.0092 29.5 8.6 74 307-394 683-756 (763)
172 PHA02754 hypothetical protein; 21.6 1.1E+02 0.0024 22.2 2.8 24 389-412 12-36 (67)
173 KOG0994 Extracellular matrix g 21.5 1.4E+03 0.03 27.3 12.4 23 295-318 1466-1488(1758)
174 TIGR02404 trehalos_R_Bsub treh 21.1 1.7E+02 0.0038 27.2 5.1 25 48-72 39-63 (233)
175 PF03575 Peptidase_S51: Peptid 21.1 1.3E+02 0.0027 26.2 3.8 48 21-72 1-48 (154)
176 PRK11402 DNA-binding transcrip 20.1 1.8E+02 0.004 27.2 5.0 26 48-73 48-73 (241)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-109 Score=825.48 Aligned_cols=383 Identities=46% Similarity=0.810 Sum_probs=339.8
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCcc
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNY 80 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~y 80 (449)
|||++|.+.|.++.++|++|+++|++||++|||.+||.+||+|+||+.|+++|++|+++||||++ +|+|||+|++|++|
T Consensus 73 KIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~Y 152 (464)
T COG0215 73 KIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDY 152 (464)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred ccccCc-ccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 81 GRLSGQ-RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 81 g~ls~~-~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
|+||++ +++++..|+|++.+..|+||.||+|||.++||||+|+||||.||||||||||+|+.+|||.++|||+||.||+
T Consensus 153 G~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLi 232 (464)
T COG0215 153 GKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLI 232 (464)
T ss_pred HhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCccccc
Confidence 999976 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccC-CCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHH
Q 013130 160 FPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 238 (449)
Q Consensus 160 ~~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~ 238 (449)
||||+||+||++|+++ ++|+++|||+|||+++|+|||||+||||+++|++++|+|.++|||||++||+++++||++.|.
T Consensus 233 FPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~ 312 (464)
T COG0215 233 FPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLE 312 (464)
T ss_pred CCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHH
Confidence 9999999999999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 013130 239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 318 (449)
Q Consensus 239 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~ 318 (449)
++.+.+.+|++++..+........ . . .+.++...|.++|+|||||+.|++. |+++++.+|..++...
T Consensus 313 ~A~~~l~rl~~~~~~~~~~~~~~~-------~-~----~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~ 379 (464)
T COG0215 313 EAKKALERLYNALRRLRDLAGDAE-------L-A----DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGK 379 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc-------c-c----hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhccc
Confidence 999999999998876542211110 0 0 3456777899999999999999999 9999999987765443
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHHHhc-----CCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCCh
Q 013130 319 KKQPKQQQLSLIESLRKIENEVKEVLRILG-----LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDF 393 (449)
Q Consensus 319 pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf 393 (449)
. ....++..+..++.+|| +.+... . ......++.|+.||++|.+||++|||
T Consensus 380 ~------------~~~~~~~~~~~~~~~lg~~~l~~~~~~~-~-----------~~~~~~~~~i~~Li~~R~~aR~~K~~ 435 (464)
T COG0215 380 S------------DAKAVLSALKALLAILGLKVLGLFPQSG-A-----------QEDESDDEEIEALIEERLEARKAKNW 435 (464)
T ss_pred c------------chHHHHHHHHHHHHHhCchhhccccccc-c-----------ccccchHHHHHHHHHHHHHHHHhhCH
Confidence 1 01122234444444444 444310 0 01112467899999999999999999
Q ss_pred hHhHHHHHHcHhCCCEEEecCCCeEEEe
Q 013130 394 SKSDQIRADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 394 ~~AD~IRd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
++||+||++|.++||.|+|+|+||+|++
T Consensus 436 ~~AD~iRd~L~~~Gi~leD~~~gt~w~~ 463 (464)
T COG0215 436 ALADEIRDELLALGIILEDTPDGTTWRR 463 (464)
T ss_pred HHHHHHHHHHHHCCcEEEECCCCeEEEe
Confidence 9999999999999999999999999997
No 2
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=3.2e-104 Score=819.34 Aligned_cols=423 Identities=64% Similarity=1.091 Sum_probs=359.0
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 80 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~y 80 (449)
.||+++|+++|++|+|+|++|++.|+++|++|||.+|+++||+|+|++.|+++|++|++|||||+++|+|||||++|++|
T Consensus 130 DKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~Y 209 (557)
T PLN02946 130 DKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEY 209 (557)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhh
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcC
Q 013130 81 GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 160 (449)
Q Consensus 81 g~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~ 160 (449)
|+||+++++++..|.+|+.++.|+||.||+|||.+++|||+|+||||.||||||||||+|+.+|+|.++|||+||.||+|
T Consensus 210 G~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F 289 (557)
T PLN02946 210 GKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 289 (557)
T ss_pred hhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHHH
Q 013130 161 PHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240 (449)
Q Consensus 161 ~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~~ 240 (449)
|||+|++||++|+.+.+++++|||+|||+++|+|||||+||+|++.|++++||+|++|||||+++|++|++||++.|.++
T Consensus 290 PHHENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a 369 (557)
T PLN02946 290 PHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESA 369 (557)
T ss_pred CcccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013130 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKK 320 (449)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw 320 (449)
.+.+.++++++..+...+............+..+...+..+.+.|.+||+|||||+.|+.. |+++++.+|.+++....
T Consensus 370 ~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~~~~~- 447 (557)
T PLN02946 370 SERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLHTRKG- 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhhccc-
Confidence 9888888888777654332110000000112223345567788999999999999999999 99999999999865310
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChhHhHHHH
Q 013130 321 QPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIR 400 (449)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR 400 (449)
.... .....+..+...+..++.+|||... ...+.+++.........++.+++|+.||++|++||++|||++||+||
T Consensus 448 --~~~~-~~~~~l~~~~~~~~~~~~vLGl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR 523 (557)
T PLN02946 448 --KKQE-KRLESLAALEKKIRDVLSVLGLMPT-SYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIR 523 (557)
T ss_pred --cccc-chHHHHHHHHHHHHHHHHHcCCCch-hhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 0000 0122344556677888899998543 11111111111111112233457999999999999999999999999
Q ss_pred HHcHhCCCEEEecCCCeEEEeCCcc-hhhh
Q 013130 401 ADLTRKGIALMDMGKETIWRPCVLV-EQEQ 429 (449)
Q Consensus 401 d~L~~~Gi~i~D~~~gt~W~~~~~~-~~~~ 429 (449)
++|.++||.|+||++||+|++..|. ++|+
T Consensus 524 ~~L~~~Gi~l~Dt~~Gt~w~~~~~~~~~~~ 553 (557)
T PLN02946 524 KDLAAVGIALMDSPDGTTWRPAIPLALQEQ 553 (557)
T ss_pred HHHHHCCCEEEECCCCceEEEcCCCccccc
Confidence 9999999999999999999998665 4443
No 3
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.9e-100 Score=789.25 Aligned_cols=384 Identities=45% Similarity=0.754 Sum_probs=337.7
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 79 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~ 79 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+|+++||+|+|++.|+++|++|+++|+||++ .|+|||||++|+.
T Consensus 298 DKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~ 377 (699)
T PRK14535 298 DKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA 377 (699)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence 499999999999999999999999999999999999999999999999999999999999999987 6799999999999
Q ss_pred cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
||+||+++++++..|.+++.++.|+||.||+|||++++|+|.|+||||.||||||||||+|+.+|||.++|||+||.||+
T Consensus 378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi 457 (699)
T PRK14535 378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ 457 (699)
T ss_pred cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccCC----------------CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 160 FPHHENEIAQSCAACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 160 ~~H~~~~~a~~~a~~~~----------------~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
||||+||+||++|+++. +|+++|||+|||+++|+|||||+||+|+|.+++++||+|++|||+++
T Consensus 458 FPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLs 537 (699)
T PRK14535 458 FPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537 (699)
T ss_pred CCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc
Confidence 99999999999998775 48999999999999999999999999999999999999999999999
Q ss_pred cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 013130 224 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF 303 (449)
Q Consensus 224 ~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l 303 (449)
++|++|++||++.|.++.+.+.++++.+..+.. . . ..+...+..+.+.|.+||+||||+|.|+.. |
T Consensus 538 shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~-~---~---------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L 603 (699)
T PRK14535 538 AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA-A---E---------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-L 603 (699)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh-c---c---------chhhhhHHHHHHHHHHHHhhccChHHHHHH-H
Confidence 999999999999999999999999888765321 0 0 001123456778999999999999999999 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q 013130 304 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 383 (449)
Q Consensus 304 ~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~ 383 (449)
+++++.+|..... .+...+..+..+|||... ...+.+.. .+ ...++.+++|+.||++
T Consensus 604 ~~lvk~iN~~~~~------------------~~~~~l~~~~~vLGl~~~-~~~~~~~~---~~-~~~~~~~~~i~~Li~~ 660 (699)
T PRK14535 604 FELAGEVNKTNDA------------------QLAGCLKALGGIIGLLQR-DPTEFLQG---GA-ASDGLSNEEIEDLIAR 660 (699)
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHhhcCCCcc-chhhhhhc---cc-ccccCCHHHHHHHHHH
Confidence 9999999976310 112345567789998532 11111100 00 0112234579999999
Q ss_pred HHHHhcCCChhHhHHHHHHcHhCCCEEEecCCCeEEEe
Q 013130 384 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 384 R~~aR~~Kdf~~AD~IRd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
|++||++|||++||+||++|.++||.|+||++||+|++
T Consensus 661 R~~AR~~Kdfa~AD~IRd~L~~~GI~veDt~~Gt~W~~ 698 (699)
T PRK14535 661 RKQARADKNWAESDRIRDLLNEHKIILEDNAGGTTWRR 698 (699)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCCceEee
Confidence 99999999999999999999999999999999999986
No 4
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.1e-98 Score=765.60 Aligned_cols=395 Identities=35% Similarity=0.588 Sum_probs=339.2
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 80 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~y 80 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+|+++||+|+|++.|+++|++|+++||||+++|+|||||++|++|
T Consensus 83 dKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~Y 162 (490)
T PRK14536 83 DKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSY 162 (490)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCCcccccccCccchhcccccc--CC-CCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeeccc
Q 013130 81 GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 157 (449)
Q Consensus 81 g~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~--~~-~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkD 157 (449)
|+||+++++++..|++++.+..|+||.||+|||.+. ++ +|+|+||||+||||||||||+|+.+|+|.++|||+||+|
T Consensus 163 G~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~D 242 (490)
T PRK14536 163 GSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVD 242 (490)
T ss_pred hhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEecccc
Confidence 999999999999999998888999999999999764 44 589999999999999999999999999999999999999
Q ss_pred CcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhcCcCCCcccCHHH
Q 013130 158 LIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQ 236 (449)
Q Consensus 158 li~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~~~ 236 (449)
|+||||+||+||++|+++.+|+++|||+|+|+++|+|||||+||+|+++|+++. |+++++||||+++||++|++||++.
T Consensus 243 liFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~ 322 (490)
T PRK14536 243 HIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEA 322 (490)
T ss_pred CCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc--CC----C-CCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 013130 237 LDSASDAVFYIYQTLQDCEVALSPFQE--HG----K-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKF 309 (449)
Q Consensus 237 l~~~~~~l~~l~~~~~~~~~~~~~~~~--~~----~-~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~ 309 (449)
|.++.+.+++|.+++..+......... .. . .......+...+..+.+.|.+||+||||||.|++. |+++++.
T Consensus 323 l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~~ 401 (490)
T PRK14536 323 LKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVKD 401 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHH
Confidence 999999999999988776432211100 00 0 00000112233556788999999999999999999 9999999
Q ss_pred HHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q 013130 310 INSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL-PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 388 (449)
Q Consensus 310 ~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR 388 (449)
+|.- + ..+...+..+..+|||. .... .+...+ . ......+++|++||++|++||
T Consensus 402 ~n~~-----~--------------~~~~~~~~~~~~vLGl~~~~~~-~~~~~~----~-~~~~~~~~~i~~li~~R~~aR 456 (490)
T PRK14536 402 TSVP-----P--------------SLCLSVLQAMDTVLGLGLIQEA-TASLSA----Q-VPAGPSEEEIGQLIEARAHAR 456 (490)
T ss_pred hhhh-----H--------------HHHHHHHHHHHhhcCcccccch-hhhhhh----c-ccccCCHHHHHHHHHHHHHHH
Confidence 8851 0 01234566677899984 2101 111100 0 001112356999999999999
Q ss_pred cCCChhHhHHHHHHcHhCCCEEEecCCCeEEEe
Q 013130 389 KNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 389 ~~Kdf~~AD~IRd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
++|||++||+||++|.++||.|+|||+||+|++
T Consensus 457 ~~kdf~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 489 (490)
T PRK14536 457 QTKDFPLADEIRDKLKAEGIELEDTHLGTIWKR 489 (490)
T ss_pred HhCCHHHHHHHHHHHHHCCCEEEEcCCCceEEe
Confidence 999999999999999999999999999999986
No 5
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-96 Score=751.18 Aligned_cols=394 Identities=30% Similarity=0.500 Sum_probs=334.7
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 80 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~y 80 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+|+++||+|+|++.|+++|++|+++|+||+++|+|||||++|++|
T Consensus 81 dKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~Y 160 (481)
T PRK14534 81 DKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSY 160 (481)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccc--CCCCCcccccccCccchhccccc---cCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeec
Q 013130 81 GRLSGQRLENNR--AGERVAVDSRKRNPADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 155 (449)
Q Consensus 81 g~ls~~~l~~~~--~g~~~~~~~~k~~~~Df~lwk~~---~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~G 155 (449)
|+||+++++++. .|.+++.+..|+||.||+|||.+ ++++|+|+||||+||||||||||+|+.+|+|.++|||+||
T Consensus 161 G~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG 240 (481)
T PRK14534 161 GQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGG 240 (481)
T ss_pred hhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecc
Confidence 999999999876 78899888899999999999975 7889999999999999999999999999999999999999
Q ss_pred ccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhcCcCCCcccCH
Q 013130 156 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSV 234 (449)
Q Consensus 156 kDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~ 234 (449)
+||+||||+|||||++|+++.+++++|||+|||+++|+|||||+||+|++.|++++ |+++++|||++++||++|++||+
T Consensus 241 ~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~ 320 (481)
T PRK14534 241 VDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTF 320 (481)
T ss_pred cccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Q 013130 235 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 314 (449)
Q Consensus 235 ~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi 314 (449)
+.|.++.+.+.++++++..+...+......................+.+.|.+||+||||||.|++. |+++++.+|...
T Consensus 321 e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~~ 399 (481)
T PRK14534 321 NNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLSF 399 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHhh
Confidence 9999999999999998876543332100000000000000012245667999999999999999999 999999999640
Q ss_pred hhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChh
Q 013130 315 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 394 (449)
Q Consensus 315 ~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~ 394 (449)
. . ... +...+..++. ||+... ++..+. ......+++|++||++|++||++|||+
T Consensus 400 --~------~----~~~----~~~~~~~~~~-lg~~~~-----~~~~~~----~~~~~~~~~i~~li~~R~~aR~~Kd~~ 453 (481)
T PRK14534 400 --L------S----KLR----LAFKFDEVLS-LGLREE-----ILREIE----NHRIVIDDNMKSLIEERRLAKCEKDFK 453 (481)
T ss_pred --h------h----HHH----HHHHHHHHHh-CCCCcc-----cchhhc----cccccCHHHHHHHHHHHHHHHHhCChH
Confidence 0 0 011 1223444555 787322 000000 000112456999999999999999999
Q ss_pred HhHHHHHHcHhCCCEEEecCCCeEEEe
Q 013130 395 KSDQIRADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 395 ~AD~IRd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
+||+||++|.++||.|+||++||+|++
T Consensus 454 ~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 480 (481)
T PRK14534 454 RADEIREYFASKGFVLIDTEEGTKVKR 480 (481)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCEEEe
Confidence 999999999999999999999999986
No 6
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-95 Score=756.02 Aligned_cols=390 Identities=47% Similarity=0.813 Sum_probs=352.6
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 80 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~y 80 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+||+|+|+|+|++.|+++|++|+++|+||+++|+||||+++|++|
T Consensus 73 dki~~~A~~~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~y 152 (463)
T PRK00260 73 DKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDY 152 (463)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccccccc
Confidence 38999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcC
Q 013130 81 GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 160 (449)
Q Consensus 81 g~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~ 160 (449)
|+||+++++++..|.+++.+..|+||.||+|||.+++|+|.|+||||.||||||||||+|+.+|+|.|+|||+||+||+|
T Consensus 153 g~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dlif 232 (463)
T PRK00260 153 GKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIF 232 (463)
T ss_pred ccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCC
Confidence 99999999999899999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHHH
Q 013130 161 PHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240 (449)
Q Consensus 161 ~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~~ 240 (449)
|||+|++||++|+++.||+++|+|+|||+++|+|||||+||+|+|.|++++||+|++|||+++++|+++++|+++.+.++
T Consensus 233 pHh~neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a 312 (463)
T PRK00260 233 PHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQA 312 (463)
T ss_pred CchHhHHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013130 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKK 320 (449)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw 320 (449)
.+.+.++++.+.++.. ...+.++...+..+.+.|.++|+||||++.|+.. |+++++.+|.|++...
T Consensus 313 ~~~~~rl~~~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~-- 378 (463)
T PRK00260 313 KKALERLYNALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD-- 378 (463)
T ss_pred HHHHHHHHHHHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc--
Confidence 9999999998876531 1234677788888999999999889999999999 9999999999987641
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChhHhHHHH
Q 013130 321 QPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIR 400 (449)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR 400 (449)
...+..+...+..++.+|||... . ... .. .......+++++.|+++|++||++|||++||+||
T Consensus 379 ---------~~~~~~~~~~~~~~~~ilG~~~~-~-~~~---~~---~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IR 441 (463)
T PRK00260 379 ---------KEAAAALAALLRALADVLGLEQD-E-EAL---FE---AAADELLDAEIEALIEERQEARKAKDFALADAIR 441 (463)
T ss_pred ---------HHHHHHHHHHHHHHHHhcCCCch-h-hhh---hh---cccccccHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 12244456778888899998432 1 000 00 0011223567999999999999999999999999
Q ss_pred HHcHhCCCEEEecCCCeEEEe
Q 013130 401 ADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 401 d~L~~~Gi~i~D~~~gt~W~~ 421 (449)
++|.++||.|+|+++||+|++
T Consensus 442 d~L~~~Gi~v~D~~~G~~w~~ 462 (463)
T PRK00260 442 DELAALGIVLEDTPDGTTWRR 462 (463)
T ss_pred HHHHHCCcEEEEcCCCceEEe
Confidence 999999999999999999986
No 7
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.3e-95 Score=776.34 Aligned_cols=426 Identities=34% Similarity=0.549 Sum_probs=355.7
Q ss_pred ChhHHHHHHcCCC-hHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC-
Q 013130 1 MQIIRRANDLGEN-PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP- 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~-~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~- 78 (449)
.|||++|+++|++ ++++|++|++.|++||++|||.+|++++|||+|++.|++||++|++|||||+++|+|||++++|+
T Consensus 111 DKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~ 190 (651)
T PTZ00399 111 DKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRK 190 (651)
T ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhccc
Confidence 3999999999999 99999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ---ccccccC---cccccccCCCC-C-cccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCcc
Q 013130 79 ---NYGRLSG---QRLENNRAGER-V-AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 150 (449)
Q Consensus 79 ---~yg~ls~---~~l~~~~~g~~-~-~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~D 150 (449)
.||+|++ .+++.+..|.+ + +.+..|++|.||+|||.++||+|.|+||||.|||||||||++|+..++|.|+|
T Consensus 191 ~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~D 270 (651)
T PTZ00399 191 AGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPID 270 (651)
T ss_pred chhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcce
Confidence 8999985 44556666775 5 33458999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCC
Q 013130 151 IHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 229 (449)
Q Consensus 151 ih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d 229 (449)
||+||.||+||||+|++||++|+++. +|+++|+|+|||+++|+|||||+||||+|.|++++||+|++|||||+.+|++|
T Consensus 271 Ih~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~d 350 (651)
T PTZ00399 271 IHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKP 350 (651)
T ss_pred eeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCC
Confidence 99999999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 013130 230 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 307 (449)
Q Consensus 230 ~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~ 307 (449)
++||++.+.++.+..+++++.+.++...+..... .......+.+++..+..+...|.++|+|+|+++.|++. |++|+
T Consensus 351 ldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv 429 (651)
T PTZ00399 351 MNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLI 429 (651)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Confidence 9999999999988776666665554433221110 00112345678888999999999999889999999999 99999
Q ss_pred HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q 013130 308 KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 387 (449)
Q Consensus 308 ~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~a 387 (449)
+.+|.|++... ..+...+..+...|..++.+|||.+.. ..+..-+.. .........|+.|++.|+++
T Consensus 430 ~~~N~yi~~~~--------~~~~~ll~~v~~~l~~~l~ILGl~~~~---~m~~~~~~~--~~~~~~~~~i~~l~~~R~~~ 496 (651)
T PTZ00399 430 SATNTYLNSGE--------QPSAPLLRSVAQYVTKILSIFGLVEGS---DGLGSQGQN--STSENFKPLLEALLRFRDEV 496 (651)
T ss_pred HHHHHHHhccc--------cchHHHHHHHHHHHHHHHhcccCCcch---hhccccccc--cchhhhHHHHHHHHHHHHHH
Confidence 99999997311 112445667788899999999995431 000000000 00011124588999999999
Q ss_pred hc----C-----------CChhHhHHHHH-HcHhCCCEEEecCCC-eEEEeCCcc-----hhhhhCCchhhhcCC
Q 013130 388 RK----N-----------KDFSKSDQIRA-DLTRKGIALMDMGKE-TIWRPCVLV-----EQEQEAPPAEKEKKP 440 (449)
Q Consensus 388 R~----~-----------Kdf~~AD~IRd-~L~~~Gi~i~D~~~g-t~W~~~~~~-----~~~~~~~~~~~~~~~ 440 (449)
|+ + |+|++||+||| .|.++||.|+|+++| |+|++.++. ++|+++.+++|+++|
T Consensus 497 R~~a~~~~~~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (651)
T PTZ00399 497 RDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRK 571 (651)
T ss_pred HHHHHhccccccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 93 5 88999999999 599999999999999 799999876 333444444444433
No 8
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=3.2e-93 Score=736.36 Aligned_cols=393 Identities=45% Similarity=0.754 Sum_probs=340.7
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeec-CcEEEeCCCCCc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPN 79 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~-g~~yf~~~~~~~ 79 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+|++++|+|+|++.|+++|++|+++|+||+++ |+||||+++|+.
T Consensus 71 dkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~ 150 (465)
T TIGR00435 71 DKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKD 150 (465)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccch
Confidence 3899999999999999999999999999999999998889999999999999999999999999998 999999999999
Q ss_pred cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
||+||+++++++..|.+++.+..|+||.||+|||.+++|+|+|+||||.||||||||||+|+.+|||.++|||+||+||+
T Consensus 151 yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~ 230 (465)
T TIGR00435 151 YGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLI 230 (465)
T ss_pred hccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccc
Confidence 99999999998888999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHH
Q 013130 160 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS 239 (449)
Q Consensus 160 ~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~ 239 (449)
||||+|++||++|+++.+|+++|+|+|||+++|+|||||+||+|+|.|+++.||+|++|||+++++|+++++||++.|.+
T Consensus 231 fpHhene~aqs~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~ 310 (465)
T TIGR00435 231 FPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEA 310 (465)
T ss_pred cchHHHHHHHHHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHhhhc
Q 013130 240 ASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLK 318 (449)
Q Consensus 240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N-~yi~~~~ 318 (449)
+.+.+.+|++.+..+........ . ...........+.+.|.+||+||||||.|++. |+++++.+| ..++.
T Consensus 311 a~~~~~rl~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~-- 381 (465)
T TIGR00435 311 AKNALERLYKALRVLDTTLAYSG--N----QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK-- 381 (465)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc--c----cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch--
Confidence 99999999999877643322100 0 00001112345678899999999999999999 999999999 43321
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChhHhHH
Q 013130 319 KKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQ 398 (449)
Q Consensus 319 pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~ 398 (449)
..+..+...+..+..+||++.... .+..+. . .......+|.+||++|++||++|||++||+
T Consensus 382 ------------~~~~~~~~~~~~l~~~lg~~~~~~-~~~~~~---~---~~~~~~~~i~~l~~~R~~ar~~k~~~~aD~ 442 (465)
T TIGR00435 382 ------------ADAALLIEHLIFLESRLGLLLGLP-SKPVQA---G---SNDDELGEIEALIEERSIARKEKDFAKADE 442 (465)
T ss_pred ------------HHHHHHHHHHHHHHHhcccCcccc-chhccc---c---cccccHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 012234466777788899852201 000000 0 000011358999999999999999999999
Q ss_pred HHHHcHhCCCEEEecCCCeEEEe
Q 013130 399 IRADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 399 IRd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
||++|.++||.|+||++||+|++
T Consensus 443 iR~~L~~~Gi~~~D~~~gt~w~~ 465 (465)
T TIGR00435 443 IRDELLKKGIVLEDTPQGTTWRR 465 (465)
T ss_pred HHHHHHHCCCEEEECCCCceeeC
Confidence 99999999999999999999974
No 9
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-92 Score=693.64 Aligned_cols=401 Identities=40% Similarity=0.635 Sum_probs=334.0
Q ss_pred hhHHHHH-----HcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 2 QIIRRAN-----DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 2 KI~~~A~-----~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
|||++|+ +.+.+..+.-..|+++|..||.+|||.+||+.+|+|+|++.|+.||++|++||+||..+|+||||+.+
T Consensus 107 KII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k 186 (586)
T KOG2007|consen 107 KIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK 186 (586)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc
Confidence 8999998 55566666644799999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ccccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeec
Q 013130 77 SP-NYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 155 (449)
Q Consensus 77 ~~-~yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~G 155 (449)
|+ .||+|+|+. +.+..|..+..++.|++|.||+|||++++|||+|+||||.||||||||||+|+..+||..+|||+||
T Consensus 187 f~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG 265 (586)
T KOG2007|consen 187 FPHSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGG 265 (586)
T ss_pred ccchhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCc
Confidence 99 599999865 5666777766678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCH
Q 013130 156 IDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSV 234 (449)
Q Consensus 156 kDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~ 234 (449)
.||.||||+||+||++|++.. +|++||+|+|||+++|+||||||+||||+++++++|+|++||++||+.+|+++++||.
T Consensus 266 ~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~ 345 (586)
T KOG2007|consen 266 IDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSD 345 (586)
T ss_pred ccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchH
Confidence 999999999999999999875 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 013130 235 LQLDSASDA---VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 311 (449)
Q Consensus 235 ~~l~~~~~~---l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N 311 (449)
..|..+... +++|+..++.+. ....+.......+.++...+......|+.+++|+|+|+.++.. +.+++..+|
T Consensus 346 s~m~~a~q~e~~~~~ff~~~~al~---~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N 421 (586)
T KOG2007|consen 346 STMEQALQLEKSLNNFFLDVKALL---RGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGN 421 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhh
Confidence 999888754 344444333332 2211111123345678888888999999999999999999999 999999999
Q ss_pred HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh---
Q 013130 312 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR--- 388 (449)
Q Consensus 312 ~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR--- 388 (449)
.|+....- ......|.++..+|..++.+||+........+++ ... ..-+..|++.|...|
T Consensus 422 ~~i~~~~~-------~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e---------~~~-m~~v~~L~~fr~~vRe~a 484 (586)
T KOG2007|consen 422 AYIRESGE-------RPNSALLKAIASYITKLLKIFGLSEGKGQQYVLE---------ATV-MPYVQSLSEFREKVREVA 484 (586)
T ss_pred HHHHHhcc-------ccchHHHHHHHHHHHHHHHHhCCCcccccccccc---------cch-hHHHHHHHHHHHHHHHHH
Confidence 99987751 1123677788899999999999865211111100 000 112344554444433
Q ss_pred -c--CCC-hhHhHHHHHH-cHhCCCEEEecCCCeEEEeCCcc
Q 013130 389 -K--NKD-FSKSDQIRAD-LTRKGIALMDMGKETIWRPCVLV 425 (449)
Q Consensus 389 -~--~Kd-f~~AD~IRd~-L~~~Gi~i~D~~~gt~W~~~~~~ 425 (449)
. ..+ +++||.||+. |.++|+.++|.+ |++|++.+-.
T Consensus 485 ~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~lvk~v~~ 525 (586)
T KOG2007|consen 485 REKKVPEILELCDTLRDSDLLELGVRLEDRK-GSTLVKAVDR 525 (586)
T ss_pred HhcchHHHHHHhHHHHHhhHHHhhhHHHhCC-chHHHHHhhh
Confidence 2 223 5999999986 899999999999 9999888666
No 10
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-84 Score=647.35 Aligned_cols=298 Identities=33% Similarity=0.540 Sum_probs=274.5
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecC----cEEEeCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEK 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g----~~yf~~~~ 76 (449)
.||+++|+++|++|+++|++|++.|+++|++|||..|+.|||||+|++.|+++|++|+++|+||++++ +|||+|++
T Consensus 59 dKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 59 DPLLERAARDGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 49999999999999999999999999999999998889999999999999999999999999999988 89999999
Q ss_pred CCccccccCcccccccC--CCC-Cccc-ccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEE
Q 013130 77 SPNYGRLSGQRLENNRA--GER-VAVD-SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 152 (449)
Q Consensus 77 ~~~yg~ls~~~l~~~~~--g~~-~~~~-~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih 152 (449)
|++||+||+++++++.. +.+ ++.+ ..|+||.||+|||.+++|+|+|+||||.||||||||||+|+.+|||.++|||
T Consensus 139 ~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH 218 (384)
T PRK12418 139 TPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQ 218 (384)
T ss_pred hhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccc
Confidence 99999999999988776 555 4543 3799999999999999999999999999999999999999999999999999
Q ss_pred eecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhcCcCCCc
Q 013130 153 GGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPL 230 (449)
Q Consensus 153 ~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~ 230 (449)
+||.||+||||+|++||++|+++. ||+++|||+|+|+++|+|||||+||+|+|.++++. |+++++||||++++|++|+
T Consensus 219 ~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l 298 (384)
T PRK12418 219 GGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADR 298 (384)
T ss_pred cCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCc
Confidence 999999999999999999999886 99999999999999999999999999999999874 7788999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 013130 231 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 310 (449)
Q Consensus 231 ~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~ 310 (449)
+||++.|.++.+.+.++++.+.... . . .+.++.+.|.++|+||||++.|+.. |+++++.+
T Consensus 299 ~fs~e~l~~a~~~l~r~~~~~~~~~------------~---~----~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~ 358 (384)
T PRK12418 299 EWTDAVLAEAEARLARWRAAAALPA------------G---P----DAADVVARVRAALADDLDTPGALAA-VDGWATDA 358 (384)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhccc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHH
Confidence 9999999999999988888764310 0 0 1345678899999999999999999 99999999
Q ss_pred HHHHhhhc
Q 013130 311 NSSLNMLK 318 (449)
Q Consensus 311 N~yi~~~~ 318 (449)
|.|+...+
T Consensus 359 n~~~~~~~ 366 (384)
T PRK12418 359 LEGGGDDA 366 (384)
T ss_pred HhccCCCc
Confidence 99986654
No 11
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.4e-83 Score=644.57 Aligned_cols=292 Identities=35% Similarity=0.583 Sum_probs=270.8
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecC----cEEEeCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEK 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g----~~yf~~~~ 76 (449)
.||+++|+++|++|+|+|++|+..|+++|++|||.+|+.|||||+|++.|+++|++|++||+||+++| +|||+|++
T Consensus 86 DKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 86 DPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 49999999999999999999999999999999999899999999999999999999999999999986 89999999
Q ss_pred CCccccccCcccccccC--CCC-Ccccc-cccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEE
Q 013130 77 SPNYGRLSGQRLENNRA--GER-VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 152 (449)
Q Consensus 77 ~~~yg~ls~~~l~~~~~--g~~-~~~~~-~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih 152 (449)
|++||+||+++++++.. +.+ ++.+. .|+||.||+|||.+++|+|+|+||||.||||||||||+|+.+|+|.++|||
T Consensus 166 ~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih 245 (411)
T TIGR03447 166 TEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQ 245 (411)
T ss_pred hhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecc
Confidence 99999999999988776 555 66644 799999999999999999999999999999999999999999999999999
Q ss_pred eecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhcCcCCCc
Q 013130 153 GGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPL 230 (449)
Q Consensus 153 ~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~ 230 (449)
+||.||+||||+|++||++|++++ ||+++|||+|+|+++|+|||||+||+|+|.++++. |++|++|||+++++|++|+
T Consensus 246 ~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl 325 (411)
T TIGR03447 246 GGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDR 325 (411)
T ss_pred cCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCC
Confidence 999999999999999999999887 99999999999999999999999999999999986 9999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 013130 231 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 310 (449)
Q Consensus 231 ~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~ 310 (449)
+||++.|.++.+.+.++++.+..+. . . .+..+...|.++|+||||++.|+.. |+++++.+
T Consensus 326 ~fs~e~l~~a~~~l~rl~~~~~~~~----~-----------~----~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~ 385 (411)
T TIGR03447 326 DWTDAVLAEAEARLARWRAALAATD----A-----------P----DATDLIARLRQHLANDLDTPAALAA-VDNWAAAA 385 (411)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhcc----c-----------c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHH
Confidence 9999999999999988887764321 0 0 1234567889999999999999999 99999988
Q ss_pred HH
Q 013130 311 NS 312 (449)
Q Consensus 311 N~ 312 (449)
|.
T Consensus 386 n~ 387 (411)
T TIGR03447 386 LS 387 (411)
T ss_pred Hh
Confidence 85
No 12
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=7.3e-84 Score=616.19 Aligned_cols=241 Identities=59% Similarity=1.048 Sum_probs=208.8
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeec-CcEEEeCCCCCcc
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNY 80 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~-g~~yf~~~~~~~y 80 (449)
|||++|+++|++++|+|++|+++|++||++|||.+|+.+||+|+||+.|+++|++|+++|+||+++ |+|||+|++|++|
T Consensus 59 Kii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~Y 138 (300)
T PF01406_consen 59 KIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDY 138 (300)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTT
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcC
Q 013130 81 GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 160 (449)
Q Consensus 81 g~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~ 160 (449)
|+||+++++++..|.+++.+..|+||.||+|||.+++++|+|+||||.||||||||||+|+.+|||.++|||+||.||+|
T Consensus 139 G~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F 218 (300)
T PF01406_consen 139 GKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF 218 (300)
T ss_dssp TTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT
T ss_pred ccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHHH
Q 013130 161 PHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240 (449)
Q Consensus 161 ~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~~ 240 (449)
|||+||+||++|+++++|+++|||+|||+++|+|||||+||+|+++|++++|+++++|||||++||+++++||++.|.++
T Consensus 219 PHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 219 PHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEA 298 (300)
T ss_dssp THHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHH
T ss_pred CCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HH
Q 013130 241 SD 242 (449)
Q Consensus 241 ~~ 242 (449)
.|
T Consensus 299 ~n 300 (300)
T PF01406_consen 299 KN 300 (300)
T ss_dssp H-
T ss_pred cC
Confidence 65
No 13
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-59 Score=450.96 Aligned_cols=342 Identities=22% Similarity=0.261 Sum_probs=273.0
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|+.+|.+|.|+||+.+++|+.+++.+||.+ +.|+|||+ |...|++||..+.++|+||.+++++|||+++..
T Consensus 90 lKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEt 168 (578)
T KOG0436|consen 90 LKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDET 168 (578)
T ss_pred hhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcch-hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccc
Confidence 599999999999999999999999999999999999 99999997 999999999999999999999999999999854
Q ss_pred cccc--c------cCcccccccCCCCCcc------------------cccccCccchhc----------cccccCCC---
Q 013130 79 NYGR--L------SGQRLENNRAGERVAV------------------DSRKRNPADFAL----------WKAAKAGE--- 119 (449)
Q Consensus 79 ~yg~--l------s~~~l~~~~~g~~~~~------------------~~~k~~~~Df~l----------wk~~~~~~--- 119 (449)
.|-+ + ++ ..-.+..|++|.+ +....|| +|+. |-.+ |.
T Consensus 169 f~pEskv~k~p~~~g-k~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lkt--glpDl 244 (578)
T KOG0436|consen 169 FYPESKVLKNPCPPG-KVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKT--GLPDL 244 (578)
T ss_pred cCCHHHHhcCCCCCC-ceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHc--CCCcc
Confidence 4432 1 11 1112344544322 1234566 5654 2221 22
Q ss_pred -Cccc---CCCCCCCCC--------chhhhHHHHHhh--------------cCCCccEEeecccCcCchhHHHHHHHhhc
Q 013130 120 -PSWD---SPWGPGRPG--------WHIECSAMSAHY--------------LSSKFDIHGGGIDLIFPHHENEIAQSCAA 173 (449)
Q Consensus 120 -~~w~---s~WG~grPg--------Wh~e~~~~~~~~--------------~g~~~Dih~~GkDli~~H~~~~~a~~~a~ 173 (449)
++++ ..||+++|| |++....++... +|+|..+|++||||++||++||||++||+
T Consensus 245 SISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaA 324 (578)
T KOG0436|consen 245 SISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAA 324 (578)
T ss_pred cccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhc
Confidence 2343 489999998 988776655421 37899999999999999999999999999
Q ss_pred cCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCcccCHHHHHHHH-----HHHHHH
Q 013130 174 CQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSAS-----DAVFYI 247 (449)
Q Consensus 174 ~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~-----~~l~~l 247 (449)
+.++|..+++ ||||+.+|.|||||+||||+|.+++++||+|++|||||.. .++.|.||+++.+.... +.+|+|
T Consensus 325 GlplP~~I~v-Hghwt~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~L 403 (578)
T KOG0436|consen 325 GLPLPKMIFV-HGHWTKNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNL 403 (578)
T ss_pred CCCCccEEEE-eeeeeecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9888888855 5999999999999999999999999999999999999994 89999999999998765 578999
Q ss_pred HHHHHHHHHhcCCccc-----CCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 013130 248 YQTLQDCEVALSPFQE-----HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 322 (449)
Q Consensus 248 ~~~~~~~~~~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~ 322 (449)
.||+..-.-....... ..........+.+.+..+.+.+.+.+ |+|.+++|+++ ++.+++.+|.|++..+||++
T Consensus 404 lnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl 481 (578)
T KOG0436|consen 404 LNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKL 481 (578)
T ss_pred HHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCcee
Confidence 9987531101111110 00111234578888999999999999 99999999999 99999999999999999997
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 013130 323 KQQQLSLIESLRKIENEVKEVLRILGLL 350 (449)
Q Consensus 323 ~~~~~~~~~~l~~~~~~l~~~l~ilgi~ 350 (449)
..+.+.....|..++..+.++++++|++
T Consensus 482 ~~dsq~~~~~la~~~~~~le~lrv~~il 509 (578)
T KOG0436|consen 482 FKDSQVSAEELAKVLHIILEVLRVIGIL 509 (578)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7766555666667777777888888853
No 14
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-57 Score=471.44 Aligned_cols=354 Identities=19% Similarity=0.188 Sum_probs=283.8
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-- 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-- 76 (449)
+||..+|+++|+||+++||+|++.|+++|+.|||++ |.|+|||+ |.+.+++++++|.++|+||.+...+|||+++
T Consensus 56 t~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~ 134 (558)
T COG0143 56 TKIELKAEKEGITPQELVDKNHEEFKELFKALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCER 134 (558)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc-cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccc
Confidence 699999999999999999999999999999999999 99999996 9999999999999999999999999999976
Q ss_pred C----------Cccc--------------cccCcccc---cccCCCCCcccc------------------cccCccchhc
Q 013130 77 S----------PNYG--------------RLSGQRLE---NNRAGERVAVDS------------------RKRNPADFAL 111 (449)
Q Consensus 77 ~----------~~yg--------------~ls~~~l~---~~~~g~~~~~~~------------------~k~~~~Df~l 111 (449)
| |.+| .+++..|. ..++|+++++.. ++.|| ||..
T Consensus 135 fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~ 213 (558)
T COG0143 135 FLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIW 213 (558)
T ss_pred cccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccC
Confidence 2 2233 13333322 235566544321 33454 5543
Q ss_pred ccccc---------CC----CCcc-cCCCCCCCCC--------chhhhHH---------------HHHhhcCCCcc----
Q 013130 112 WKAAK---------AG----EPSW-DSPWGPGRPG--------WHIECSA---------------MSAHYLSSKFD---- 150 (449)
Q Consensus 112 wk~~~---------~~----~~~w-~s~WG~grPg--------Wh~e~~~---------------~~~~~~g~~~D---- 150 (449)
..++ .| .+++ +..||+++|| |.+.... ...+|| +.|
T Consensus 214 -p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W--~~~~~e~ 290 (558)
T COG0143 214 -PANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFW--PADDTEL 290 (558)
T ss_pred -ChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhC--CCCCceE
Confidence 2211 12 2567 7899999998 8754432 233455 455
Q ss_pred EEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCC
Q 013130 151 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSP 229 (449)
Q Consensus 151 ih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d 229 (449)
+|++||||++||+++||||+++++.+.|.++ +.||||+++|+|||||+||+|+|.++++.||+|++||||++. +.++|
T Consensus 291 vhfIGKDii~FHav~wPamL~~~~~~lP~~i-~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D 369 (558)
T COG0143 291 VHFIGKDIIRFHAVYWPAMLMAAGLPLPTRI-FAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSD 369 (558)
T ss_pred EEEeccccCcchhhHHHHHHHhCCCCCCCEE-EeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCC
Confidence 9999999999999999999999988877877 566999999999999999999999999999999999999995 99999
Q ss_pred cccCHHHHHHHHH-----HHHHHHHHHHH-HHHhcCCcccCCC--CCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 013130 230 LNYSVLQLDSASD-----AVFYIYQTLQD-CEVALSPFQEHGK--TARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301 (449)
Q Consensus 230 ~~fs~~~l~~~~~-----~l~~l~~~~~~-~~~~~~~~~~~~~--~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~ 301 (449)
.+||++.|.++.| .+|||.||+.. +.+++++..+... ..+.|++++..+..+...+.++| +.+.+++|+..
T Consensus 370 ~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~ 448 (558)
T COG0143 370 GDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE 448 (558)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 9999999999975 57999998654 4455555443221 11456788999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhh--hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 302 AFQDALKFINSSLNMLKKKQPKQQQ--LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 302 ~l~~l~~~~N~yi~~~~pw~~~~~~--~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++++++.+|+|++.++||++.+++ +.+..+|+.+++.++.+..+|. ++|. ++.+++.+++
T Consensus 449 -i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~-~a~ki~~~L~ 511 (558)
T COG0143 449 -IMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPE-TAEKIWDQLG 511 (558)
T ss_pred -HHHHHHHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcc-hHHHHHHHhC
Confidence 999999999999999999977753 3455678888888887777776 7887 6777776664
No 15
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.4e-51 Score=435.87 Aligned_cols=355 Identities=17% Similarity=0.160 Sum_probs=270.7
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+++|.++|++|+++|++|++.|+++|+.|||.+ |.|+|||+ |.+.|+++|.+|.++|+||.++..+|||+++-.
T Consensus 120 ~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~-D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~ 198 (616)
T PLN02224 120 EKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAY-DKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEE 198 (616)
T ss_pred hHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCC-CcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCC
Confidence 589999999999999999999999999999999987 99999997 999999999999999999999999999998743
Q ss_pred cccc--ccCcccccccCCCCCcccc------------------cccCccchhc----------cccc--cCCCCccc-CC
Q 013130 79 NYGR--LSGQRLENNRAGERVAVDS------------------RKRNPADFAL----------WKAA--KAGEPSWD-SP 125 (449)
Q Consensus 79 ~yg~--ls~~~l~~~~~g~~~~~~~------------------~k~~~~Df~l----------wk~~--~~~~~~w~-s~ 125 (449)
.|.. |-.- .....+|.++++.+ ...++ +|+. |-.. .+-.++++ ++
T Consensus 199 f~~~~~l~~~-~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~ 276 (616)
T PLN02224 199 YKDEKELLEN-NCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVD 276 (616)
T ss_pred CCCHHHHcCC-CCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCC
Confidence 2221 1100 00122344433211 12232 2221 2111 01124676 48
Q ss_pred CCCCCCC--------chhhhHHHHHh--------------hcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEE
Q 013130 126 WGPGRPG--------WHIECSAMSAH--------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 183 (449)
Q Consensus 126 WG~grPg--------Wh~e~~~~~~~--------------~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~ 183 (449)
||+++|+ |++....++.. .+++|.|+|++||||++||+++|||++++++.+.|.++ +
T Consensus 277 WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~ 355 (616)
T PLN02224 277 WGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-F 355 (616)
T ss_pred CceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-E
Confidence 9999997 77666554331 11458899999999999999999999999865556666 6
Q ss_pred eeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCcccCHHHHHHHH-----HHHHHHHHHHHHH-HH
Q 013130 184 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSAS-----DAVFYIYQTLQDC-EV 256 (449)
Q Consensus 184 h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~-----~~l~~l~~~~~~~-~~ 256 (449)
+||||+++|+|||||+||+|+|.++++.||+|++||||++. ++.+|.+|+++.+.+.. +.++|+++|+..+ ..
T Consensus 356 ~~g~l~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k 435 (616)
T PLN02224 356 GHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKK 435 (616)
T ss_pred ecccEecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999995 99999999999987764 4578888875443 33
Q ss_pred hcCCcccCC-CCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhh----hhHH
Q 013130 257 ALSPFQEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL----SLIE 331 (449)
Q Consensus 257 ~~~~~~~~~-~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~----~~~~ 331 (449)
.+.+..+.. .....+.++.+.++.+.+.+.++| +.+++++|+.. ++++++.+|+|++..+||.+.+++. .+..
T Consensus 436 ~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~ 513 (616)
T PLN02224 436 NCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAK 513 (616)
T ss_pred hcCCcCCCccccccccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchhhhccccccHHHHHH
Confidence 333322111 112346789999999999999999 99999999999 9999999999999999997554321 2345
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 332 SLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 332 ~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
.++.+.+.|+.+..+|. |+|. .++++++++
T Consensus 514 ~l~~l~e~lr~~a~LLaPf~P~-~Ae~I~~~L 544 (616)
T PLN02224 514 DLVIILEVMRVIAVALSPIAPC-LSLRIYSQL 544 (616)
T ss_pred HHHHHHHHHHHHHHHHhccccH-HHHHHHHHh
Confidence 56677778887777776 6776 666666655
No 16
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.9e-51 Score=442.93 Aligned_cols=358 Identities=12% Similarity=0.071 Sum_probs=273.7
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
+||..+|.++|++|+|+|++|++.|+++|+.|||.+ |.|.|||+ |.+.++++|.+|.++|+||++...++||+++-
T Consensus 69 ~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~-D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~ 147 (801)
T PLN02610 69 TATETKALEENCTPKEICDKYHAIHKEVYDWFDISF-DKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQK 147 (801)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcc-ccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCC
Confidence 589999999999999999999999999999999998 89999995 99999999999999999999999999998752
Q ss_pred -----------Cc--cc------c--------ccCcccccc---cCCCCCcccc------------------cccCc---
Q 013130 78 -----------PN--YG------R--------LSGQRLENN---RAGERVAVDS------------------RKRNP--- 106 (449)
Q Consensus 78 -----------~~--yg------~--------ls~~~l~~~---~~g~~~~~~~------------------~k~~~--- 106 (449)
|. || . +.+.+|.+. ++|.+++... .+.++
T Consensus 148 fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~ 227 (801)
T PLN02610 148 FLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAG 227 (801)
T ss_pred CcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCC
Confidence 12 22 1 111222221 2455543311 11111
Q ss_pred ---cc---hhc-cccc--cCCCCcccCCCCCCCCC----------chhhhHHHH----------HhhcCCCcc---EEee
Q 013130 107 ---AD---FAL-WKAA--KAGEPSWDSPWGPGRPG----------WHIECSAMS----------AHYLSSKFD---IHGG 154 (449)
Q Consensus 107 ---~D---f~l-wk~~--~~~~~~w~s~WG~grPg----------Wh~e~~~~~----------~~~~g~~~D---ih~~ 154 (449)
.. .+. |-.. ++-.++++.+||+++|. |++....++ ..||..|-| +|++
T Consensus 228 ~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfi 307 (801)
T PLN02610 228 GWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFM 307 (801)
T ss_pred CcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEE
Confidence 00 000 2211 11125678899999983 776554332 235643335 8999
Q ss_pred cccCcCchhHHHHHHHhhccCC--CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhc-CcCCCc
Q 013130 155 GIDLIFPHHENEIAQSCAACQD--SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPL 230 (449)
Q Consensus 155 GkDli~~H~~~~~a~~~a~~~~--~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~-~~~~d~ 230 (449)
||||++||+++||||++|++.+ +|.++ +.||||+++|+|||||+||+|+|.++++. ||+|++||||++. +.++|.
T Consensus 308 GKDi~~fH~i~wPa~L~a~g~~~~~p~~i-~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~ 386 (801)
T PLN02610 308 GKDNVPFHTVMFPSTLLGTGENWTMMKTI-SVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 386 (801)
T ss_pred eeecchhHHHHHHHHHHhCCCCcCCCCEE-EeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCC
Confidence 9999999999999999999864 55666 66799999999999999999999999996 9999999999995 999999
Q ss_pred ccCHHHHHHHHH-----HHHHHHHHHHHHHH-----hcCCcccCC---CCCCCChhHHHHHHHHHHHHHHHHHhccCHHH
Q 013130 231 NYSVLQLDSASD-----AVFYIYQTLQDCEV-----ALSPFQEHG---KTARINPAAEDCINKLRDEFHARMSDDLNTSH 297 (449)
Q Consensus 231 ~fs~~~l~~~~~-----~l~~l~~~~~~~~~-----~~~~~~~~~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~ 297 (449)
+||++.|.++.| .++||++|+..+.. ++.+..+.. .....|.++++.+.++.+++.++| +.|+++.
T Consensus 387 dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~ 465 (801)
T PLN02610 387 LFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQ 465 (801)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHH
Confidence 999999999865 57888888654433 233322211 012346889999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhhhh-hhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 298 ILTGAFQDALKFINSSLNMLKKKQPKQQQL-SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 298 al~~~l~~l~~~~N~yi~~~~pw~~~~~~~-~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++. |+++++.+|+||+..+||.+.+.+. .+..+++.+++.|+.++.+|. |+|. .+++++++|+
T Consensus 466 Al~~-I~~l~~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg 531 (801)
T PLN02610 466 GLKT-AMSISSEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLN 531 (801)
T ss_pred HHHH-HHHHHHHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhC
Confidence 9999 9999999999999999998655432 345577777788888888886 7887 7777777775
No 17
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-51 Score=430.24 Aligned_cols=347 Identities=20% Similarity=0.241 Sum_probs=266.3
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-- 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-- 76 (449)
.||+.+|+++|++|+++|++|+..|+++|++|||.+ |.|+|||+ |++.|+++|.+|.++|+||++++.+|||+++
T Consensus 52 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~ 130 (511)
T PRK11893 52 QKIQRKAEEAGISPQELADRNSAAFKRLWEALNISY-DDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEE 130 (511)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCc-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccc
Confidence 489999999999999999999999999999999996 88999997 9999999999999999999999999999987
Q ss_pred C------C-------------------c-cccccCc--ccccccCC--CCCcccc--------cccCccchhccccccCC
Q 013130 77 S------P-------------------N-YGRLSGQ--RLENNRAG--ERVAVDS--------RKRNPADFALWKAAKAG 118 (449)
Q Consensus 77 ~------~-------------------~-yg~ls~~--~l~~~~~g--~~~~~~~--------~k~~~~Df~lwk~~~~~ 118 (449)
| . + |++++.. .+.+...+ .++..+. .+++..||++|+.
T Consensus 131 ~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~---- 206 (511)
T PRK11893 131 FYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT---- 206 (511)
T ss_pred cCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC----
Confidence 4 0 1 4444431 12222222 1121111 2345678888862
Q ss_pred CCcccCCCCCCCCC--------ch-------------hhhHHH---HHhhcCCCccEEeecccCcCchhHHHHHHHhhcc
Q 013130 119 EPSWDSPWGPGRPG--------WH-------------IECSAM---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC 174 (449)
Q Consensus 119 ~~~w~s~WG~grPg--------Wh-------------~e~~~~---~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~ 174 (449)
+..||++.|+ |+ -+|++| ...+| |.|+|++|+|++||||++||||++|++
T Consensus 207 ----~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~ 280 (511)
T PRK11893 207 ----NFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAG 280 (511)
T ss_pred ----CCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCC
Confidence 1235555554 32 156655 34556 789999999999999999999999985
Q ss_pred CCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCcccCHHHHHHHHH-----HHHHHH
Q 013130 175 QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIY 248 (449)
Q Consensus 175 ~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~~-----~l~~l~ 248 (449)
.+.| +.|+|||||+.+|+|||||+||+|+|.|++++||+|++||||++. ++++|++|+++.+..+.+ .++|++
T Consensus 281 ~~~p-~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 281 LPLP-KRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCCC-CEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4544 677899999999999999999999999999999999999999996 899999999999977654 356666
Q ss_pred HHHHHHHH-hcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhh
Q 013130 249 QTLQDCEV-ALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 326 (449)
Q Consensus 249 ~~~~~~~~-~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~ 326 (449)
+++..+.. ...+..+. ......|.+++..+..+.+.+.++| ++|+++.|+.. |+++++.+|.|++..+||...+++
T Consensus 360 ~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~ 437 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTD 437 (511)
T ss_pred HHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCC
Confidence 65543322 22222111 1123456788899999999999999 99999999999 999999999999999999744422
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 327 -LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 327 -~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
..+..++..+.+.++.++.++. |+|. .+++++++|
T Consensus 438 ~~~~~~~l~~~~~~l~~l~~ll~P~~P~-~ae~i~~~L 474 (511)
T PRK11893 438 PERLATVLYTLLEVLRGIAVLLQPVMPE-LAAKILDQL 474 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccch-HHHHHHHHh
Confidence 2345567777777777777776 6776 566666555
No 18
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.8e-50 Score=430.98 Aligned_cols=354 Identities=16% Similarity=0.180 Sum_probs=270.8
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|+++|++|+++|++|++.|+++|++|||.+ |.|+|||+ |...++++|++|.++|+||.++..++||+.+-.
T Consensus 55 ~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~-D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~ 133 (648)
T PRK12267 55 QKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISY-DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCET 133 (648)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCc
Confidence 489999999999999999999999999999999997 99999997 999999999999999999999999999987642
Q ss_pred cccc--ccCcccccccCCCCCccc------------------ccccCccchh-----------ccccc--cCCCCccc-C
Q 013130 79 NYGR--LSGQRLENNRAGERVAVD------------------SRKRNPADFA-----------LWKAA--KAGEPSWD-S 124 (449)
Q Consensus 79 ~yg~--ls~~~l~~~~~g~~~~~~------------------~~k~~~~Df~-----------lwk~~--~~~~~~w~-s 124 (449)
.|.. +... .....||.++++. ..+++| +|. -|-.. ++-.++++ .
T Consensus 134 ~l~~~~l~~~-~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~ 211 (648)
T PRK12267 134 FFTESQLVDG-GKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSF 211 (648)
T ss_pred cCChHHhccC-CcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCC
Confidence 2221 1000 0012334443321 122232 221 13221 11124565 4
Q ss_pred CCCCCCCC--------chhhhHHHHH-------------hhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEE
Q 013130 125 PWGPGRPG--------WHIECSAMSA-------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 183 (449)
Q Consensus 125 ~WG~grPg--------Wh~e~~~~~~-------------~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~ 183 (449)
+||+++|+ |++....++. +|| |.|+|++|+||++||..+|||++++++.++|.++ +
T Consensus 212 ~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~w--p~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v-~ 288 (648)
T PRK12267 212 DWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFW--PADVHLVGKDILRFHAIYWPIMLMALGLPLPKKV-F 288 (648)
T ss_pred CcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhc--ccceEEEeeeecchhHHHHHHHHHhCCCCCCcEE-E
Confidence 89999997 7665543322 234 8899999999999999999999999977777888 5
Q ss_pred eeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH-----HHHHHHHHHHHH-HH
Q 013130 184 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD-----AVFYIYQTLQDC-EV 256 (449)
Q Consensus 184 h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~-----~l~~l~~~~~~~-~~ 256 (449)
.||||+++|+|||||+||+|+|.+++++||+|++||||++ .++++|.+||++.+..+.| .++|+++|+..+ ..
T Consensus 289 ~hg~l~~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~ 368 (648)
T PRK12267 289 AHGWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINK 368 (648)
T ss_pred ecceEEECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999998 4899999999999987653 467777775433 22
Q ss_pred hcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh--h-hhhHHH
Q 013130 257 ALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--Q-LSLIES 332 (449)
Q Consensus 257 ~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~--~-~~~~~~ 332 (449)
.+.+..+. ......|.++++.++++.+++.++| ++|++++|++. +++|++.+|.|++..+||.+.++ + ......
T Consensus 369 ~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~ 446 (648)
T PRK12267 369 YFDGEIPAPGNVTEFDEELIALAEETLKNYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWVLAKDEGKKERLATV 446 (648)
T ss_pred hcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChhhhcCcccHHHHHHH
Confidence 23322221 1223467899999999999999999 89999999999 99999999999999999975443 1 223456
Q ss_pred HHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 333 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 333 l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++.+++.++.++.+|. |+|. .+++++++++
T Consensus 447 l~~~~~~l~~~~~lL~P~~P~-~ae~i~~~Lg 477 (648)
T PRK12267 447 MYHLAESLRKVAVLLSPFMPE-TSKKIFEQLG 477 (648)
T ss_pred HHHHHHHHHHHHHHHhCccch-HHHHHHHHcC
Confidence 6777777777777776 6777 6677766664
No 19
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-48 Score=421.17 Aligned_cols=355 Identities=18% Similarity=0.167 Sum_probs=265.3
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|+++|++|+++|++|++.|+++|++|||.+ |.|+|||+ |++.|+++|.+|+++|+||++++.+|||+.+-.
T Consensus 53 ~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~-d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~ 131 (673)
T PRK00133 53 TPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISF-DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGM 131 (673)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC-CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCC
Confidence 589999999999999999999999999999999997 89999995 999999999999999999999999999987631
Q ss_pred ------------c------ccc--------ccCccccc---ccCCCCCcccccc----------cCccchh----ccccc
Q 013130 79 ------------N------YGR--------LSGQRLEN---NRAGERVAVDSRK----------RNPADFA----LWKAA 115 (449)
Q Consensus 79 ------------~------yg~--------ls~~~l~~---~~~g~~~~~~~~k----------~~~~Df~----lwk~~ 115 (449)
. +|. +.+.+|.+ ..+|..+++...+ +-..++. .|.+.
T Consensus 132 ~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~ 211 (673)
T PRK00133 132 FLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPN 211 (673)
T ss_pred CccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHH
Confidence 1 221 11111211 1245555432110 0000110 02111
Q ss_pred ---------cCCC----CcccCCC-CCCCCC--------chhhhHHH---------------HHhhcC-C--CccEEeec
Q 013130 116 ---------KAGE----PSWDSPW-GPGRPG--------WHIECSAM---------------SAHYLS-S--KFDIHGGG 155 (449)
Q Consensus 116 ---------~~~~----~~w~s~W-G~grPg--------Wh~e~~~~---------------~~~~~g-~--~~Dih~~G 155 (449)
+.+. ++++..| |+++|| |......+ ...||. . +..+|++|
T Consensus 212 ~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iG 291 (673)
T PRK00133 212 VANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIG 291 (673)
T ss_pred HHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEe
Confidence 0111 4567889 999997 76533222 123441 1 23499999
Q ss_pred ccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcC-CCcccC
Q 013130 156 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYS 233 (449)
Q Consensus 156 kDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~-~d~~fs 233 (449)
+||++||+++|||+++|++.++|.++ +.||||+.+|+|||||+||+|+|.|++++||+|++||||++. +.+ +|.+|+
T Consensus 292 kDi~~fH~i~wpa~l~a~g~~lP~~v-~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs 370 (673)
T PRK00133 292 KDIIYFHTLFWPAMLEGAGYRLPTNV-FAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFN 370 (673)
T ss_pred ecchhHHHHHHHHHHHhCCCCCCCEE-eeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999877777777 566999999999999999999999999999999999999985 788 899999
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHH-HhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 013130 234 VLQLDSASD-----AVFYIYQTLQDCE-VALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 307 (449)
Q Consensus 234 ~~~l~~~~~-----~l~~l~~~~~~~~-~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~ 307 (449)
++.+....+ .++|+.+|+..+. ..+.+.. .....|.+++..++.+...+.++| ++|+++.|++. +++++
T Consensus 371 ~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~---~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~ 445 (673)
T PRK00133 371 WEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKL---PDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALA 445 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 999876543 3556655543332 2222111 113457899999999999999999 89999999999 99999
Q ss_pred HHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 308 KFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 308 ~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
..+|.|++..+||...+++ ......++.++..++.++.+|. |+|. .+++++++++
T Consensus 446 ~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~-~ae~i~~~Lg 502 (673)
T PRK00133 446 DFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPE-LAERAEAFLN 502 (673)
T ss_pred HHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhch-HHHHHHHHhC
Confidence 9999999999999754432 2345567777788888888886 6776 6676766654
No 20
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.4e-46 Score=398.30 Aligned_cols=354 Identities=19% Similarity=0.177 Sum_probs=261.5
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
+||+.+|+++|++|+++|++|++.|+++|++|||.+ |.|+|||+ |++.|++++++|.++|+||++++.+|||+.+-
T Consensus 50 ~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~-D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~ 128 (530)
T TIGR00398 50 TKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISF-DRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEM 128 (530)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC-CCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCc
Confidence 589999999999999999999999999999999996 89999997 99999999999999999999999999998752
Q ss_pred -----------Ccccc------cc---Cc-----cccc---ccCCCCCcccc------------------cccCccchhc
Q 013130 78 -----------PNYGR------LS---GQ-----RLEN---NRAGERVAVDS------------------RKRNPADFAL 111 (449)
Q Consensus 78 -----------~~yg~------ls---~~-----~l~~---~~~g~~~~~~~------------------~k~~~~Df~l 111 (449)
|.+|. .. |. ++.. ..+|..++... .+.++ ++..
T Consensus 129 ~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~ 207 (530)
T TIGR00398 129 FLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGS 207 (530)
T ss_pred CCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCC
Confidence 11111 10 11 1111 12455544211 11111 1211
Q ss_pred c-----------ccc--cCCCCcccCC-CCCCCCCc--------hhhhHHHH-------------HhhcCCCcc-----E
Q 013130 112 W-----------KAA--KAGEPSWDSP-WGPGRPGW--------HIECSAMS-------------AHYLSSKFD-----I 151 (449)
Q Consensus 112 w-----------k~~--~~~~~~w~s~-WG~grPgW--------h~e~~~~~-------------~~~~g~~~D-----i 151 (449)
| -.. .+-.++++.. ||+++|+| ......+. .+|| |.| +
T Consensus 208 ~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w--~~~~~~~~v 285 (530)
T TIGR00398 208 PASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWW--NNDEDAELI 285 (530)
T ss_pred CcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhC--CCCCCceEE
Confidence 2 111 0111355667 99999985 22221211 1334 556 9
Q ss_pred EeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCc
Q 013130 152 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPL 230 (449)
Q Consensus 152 h~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~ 230 (449)
|++|+||++||+.+|||+++|++.++|.++ ++||||+.+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|+
T Consensus 286 ~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~ 364 (530)
T TIGR00398 286 HFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-FSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDG 364 (530)
T ss_pred EEEecccchhHHHHHHHHHHhCCCCCCCEE-EeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCC
Confidence 999999999999999999999976677777 677999999999999999999999999999999999999985 799999
Q ss_pred ccCHHHHHHHHH-----HHHHHHHHHHHH-HHhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 013130 231 NYSVLQLDSASD-----AVFYIYQTLQDC-EVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF 303 (449)
Q Consensus 231 ~fs~~~l~~~~~-----~l~~l~~~~~~~-~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l 303 (449)
+|+++.+....| .++|+.+|+..+ .....+..+. ......|.++++.++.+...+.++| ++|+++.|++. +
T Consensus 365 ~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l 442 (530)
T TIGR00398 365 DFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-I 442 (530)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-H
Confidence 999999988753 345555544332 2222211111 1123467899999999999999999 99999999999 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 304 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 304 ~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
++|+..+|.|++..+||...+++..+...+..+...++.++.+|. |+|. .++++++++
T Consensus 443 ~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~-~ae~i~~~L 501 (530)
T TIGR00398 443 MKLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSILLYPIMPK-LSEKILKFL 501 (530)
T ss_pred HHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHh
Confidence 999999999999999998554433344556666677777777776 6676 556665554
No 21
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-44 Score=384.87 Aligned_cols=357 Identities=17% Similarity=0.136 Sum_probs=260.1
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt--~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
+||+.+|+++|++|+++|++|++.|+++|++|||.+ |.|+||| +|++.|+++|.+|+++|+||++++.+|||+.+-
T Consensus 55 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~ 133 (556)
T PRK12268 55 TPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISY-DLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGR 133 (556)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC-CCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCc
Confidence 589999999999999999999999999999999986 9999999 699999999999999999999999999998652
Q ss_pred -----------Cc------cccc---cC-----ccccc---ccCCCCCcccc----------cccCccc-----------
Q 013130 78 -----------PN------YGRL---SG-----QRLEN---NRAGERVAVDS----------RKRNPAD----------- 108 (449)
Q Consensus 78 -----------~~------yg~l---s~-----~~l~~---~~~g~~~~~~~----------~k~~~~D----------- 108 (449)
|. ||.. .| .++.+ ..+|+.+++.. .++-..+
T Consensus 134 ~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~ 213 (556)
T PRK12268 134 FLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPN 213 (556)
T ss_pred CcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHH
Confidence 11 2211 01 11111 12344433211 0000000
Q ss_pred ----hhcccc-c-cCCCCcccCCCCCCCC--C--------chhhhHHH----------------HHhhc--CCCccEEee
Q 013130 109 ----FALWKA-A-KAGEPSWDSPWGPGRP--G--------WHIECSAM----------------SAHYL--SSKFDIHGG 154 (449)
Q Consensus 109 ----f~lwk~-~-~~~~~~w~s~WG~grP--g--------Wh~e~~~~----------------~~~~~--g~~~Dih~~ 154 (449)
+.-|-. . ++-.+++...||++.| + |......+ ...+| ..+.++|+.
T Consensus 214 ~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~ 293 (556)
T PRK12268 214 VLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFI 293 (556)
T ss_pred HHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEE
Confidence 000211 0 1111355667999999 3 43322111 11244 236689999
Q ss_pred cccCcCchhHHHHHHHhhcc--CCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCcc
Q 013130 155 GIDLIFPHHENEIAQSCAAC--QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLN 231 (449)
Q Consensus 155 GkDli~~H~~~~~a~~~a~~--~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~ 231 (449)
|+|+++||..+||+++++.+ .+.|.++ ++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..+|++
T Consensus 294 G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v-~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~ 372 (556)
T PRK12268 294 GKDNIPFHSIIWPAMLLGSGEPLKLPDEI-VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTD 372 (556)
T ss_pred eeccCcchHHHHHHHHHhcCCCCCCCCEe-eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999987 4445555 778999999999999999999999999999999999999985 7889999
Q ss_pred cCHHHHHHHH-----HHHHHHHHHHHHHH-HhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 013130 232 YSVLQLDSAS-----DAVFYIYQTLQDCE-VALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 305 (449)
Q Consensus 232 fs~~~l~~~~-----~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~ 305 (449)
|+++.+.... +.+.|+.+++..+. .......+.......|.++++.++.+...+.++| ++|+++.|++. +++
T Consensus 373 f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~ 450 (556)
T PRK12268 373 FTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IME 450 (556)
T ss_pred CCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHH
Confidence 9999987653 24556555543332 2222211111224568999999999999999999 99999999999 999
Q ss_pred HHHHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 306 ALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 306 l~~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
|++.+|.|++..+||...+++ ......++.+...|+.++.+|. |+|. .++++++++
T Consensus 451 ~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~-~aeei~~~L 508 (556)
T PRK12268 451 LAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPF-SAQKIWEML 508 (556)
T ss_pred HHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccch-HHHHHHHHh
Confidence 999999999999999744322 2234566677778888888886 6776 566665554
No 22
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=5.2e-43 Score=347.28 Aligned_cols=220 Identities=20% Similarity=0.230 Sum_probs=185.1
Q ss_pred ChhHHHHHHcCC-------------ChHHHHHHHHHHHHHHHhhCCCCCCC--cccccc--ccHHHHHHHHHHHHHcCCe
Q 013130 1 MQIIRRANDLGE-------------NPLSLSNRYCQEYLVDMADLQCLPPT--YQPRVS--DHMEQIKDMITQIINNDCA 63 (449)
Q Consensus 1 ~KI~~~A~~~g~-------------~~~e~~~~~~~~f~~~~~~L~I~~~d--~~~rtt--~h~~~v~~~i~~L~~~G~a 63 (449)
+||+.+|++.|. +|+++|++|++.|+++|++|||.+ | .|.+|+ +|++.|+++|.+|+++|+|
T Consensus 51 ~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~i 129 (312)
T cd00668 51 LPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISY-DWSDEYITTEPEYSKAVELIFSRLYEKGLI 129 (312)
T ss_pred HHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cCCCCeECCCHHHHHHHHHHHHHHHHCCCE
Confidence 489999999998 999999999999999999999998 5 666665 4999999999999999999
Q ss_pred EeecCcEEEeCCCCCccccccCcccccccCCCCCcccccc-------cCccchhccccccCCCCcccCCCCCCCCCchhh
Q 013130 64 YVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK-------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 136 (449)
Q Consensus 64 Y~~~g~~yf~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k-------~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e 136 (449)
|++.+.+++...-|..|++++.+.++.+..+. +..+..| +++.||++ +|+++||+|+||||++
T Consensus 130 Y~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~-~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~~~P~~~i~ 199 (312)
T cd00668 130 YRGTHPVRITEQWFFDMPKFKEKLLKALRRGK-IVPEHVKNRMEAWLESLLDWAI---------SRQRYWGTPLPEDVFD 199 (312)
T ss_pred EeecceeEeeeeEEEEcHHHHHHHHHHHhcCC-cCChHHHHHHHHHHhCCCCeEE---------eccCCCCCcCCccccc
Confidence 99999999988888888888776555544333 2222233 24446665 3567999999999999
Q ss_pred h----HH---HHHhhcC--------CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCC-ccccccC
Q 013130 137 C----SA---MSAHYLS--------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSL 199 (449)
Q Consensus 137 ~----~~---~~~~~~g--------~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G-~KMSKSl 199 (449)
| +. ++..+++ +|.|||++|+|++||||++++|+++|+++. ++.++|+| ||++.+| +|||||+
T Consensus 200 ~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~ 278 (312)
T cd00668 200 VWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSK 278 (312)
T ss_pred chhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccC
Confidence 9 43 3333333 279999999999999999999999999886 89999887 9999877 9999999
Q ss_pred CCccCHHHHHHhcChhHHHHHHhhc-CcCCCccc
Q 013130 200 GNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 232 (449)
Q Consensus 200 GN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 232 (449)
||+|+|.+++++||+|++||||++. ++++|.+|
T Consensus 279 gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 279 GNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred CCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999999999999999999985 79999887
No 23
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.3e-42 Score=318.32 Aligned_cols=144 Identities=56% Similarity=0.967 Sum_probs=141.3
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 80 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~y 80 (449)
+||+++|+++|++|+++|++|++.|+++|++|||++||.|+||
T Consensus 70 ~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------- 112 (213)
T cd00672 70 DKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------- 112 (213)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcceee-------------------------------------
Confidence 5899999999999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcC
Q 013130 81 GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 160 (449)
Q Consensus 81 g~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~ 160 (449)
|||||++|+.+++|.++|||+||+||+|
T Consensus 113 ----------------------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~f 140 (213)
T cd00672 113 ----------------------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIF 140 (213)
T ss_pred ----------------------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCc
Confidence 9999999999999999999999999999
Q ss_pred chhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccC
Q 013130 161 PHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 233 (449)
Q Consensus 161 ~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs 233 (449)
|||+|++||+.|+++.|++++|+|+|+|.++|+|||||+||+|+|.|++++||+|++|||+++.+|+++++|+
T Consensus 141 pH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 141 PHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred ChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 9999999999999888999999999999999999999999999999999999999999999999999999996
No 24
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.4e-41 Score=343.13 Aligned_cols=246 Identities=24% Similarity=0.261 Sum_probs=179.2
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
+||..+|.++|++|+++|++|++.|+++|++|||.+ |.|+|||+ |.+.+++++++|.++|+||+++..+|||+++-
T Consensus 50 ~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~-D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~ 128 (391)
T PF09334_consen 50 SKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISY-DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCER 128 (391)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC-cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCc
Confidence 489999999999999999999999999999999998 99999995 99999999999999999999999999998763
Q ss_pred -----------Cccc-c--------ccCccc-----cc---ccCCCCCcccc----------c--------ccCccchhc
Q 013130 78 -----------PNYG-R--------LSGQRL-----EN---NRAGERVAVDS----------R--------KRNPADFAL 111 (449)
Q Consensus 78 -----------~~yg-~--------ls~~~l-----~~---~~~g~~~~~~~----------~--------k~~~~Df~l 111 (449)
|.|| . -.|..+ .+ ..+|..+++.. + +.++ +|
T Consensus 129 fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~-- 205 (391)
T PF09334_consen 129 FLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF-- 205 (391)
T ss_dssp EE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--
T ss_pred ccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--
Confidence 2222 0 112211 11 12344433221 1 1111 11
Q ss_pred cccc---------cCCC----CcccCCCCCCCCC--------chhhhHHHHH----------------hhc---CCCccE
Q 013130 112 WKAA---------KAGE----PSWDSPWGPGRPG--------WHIECSAMSA----------------HYL---SSKFDI 151 (449)
Q Consensus 112 wk~~---------~~~~----~~w~s~WG~grPg--------Wh~e~~~~~~----------------~~~---g~~~Di 151 (449)
|... +.+. ++.+.+||+++|+ |+..+..+.. ++| +.+-.+
T Consensus 206 ~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v 285 (391)
T PF09334_consen 206 PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIV 285 (391)
T ss_dssp SHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEE
T ss_pred CChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEE
Confidence 2111 0111 3567899999997 8765544332 334 123459
Q ss_pred EeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCc
Q 013130 152 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPL 230 (449)
Q Consensus 152 h~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~ 230 (449)
|++||||++||.++|||+++|++.++|.++ +.|||++++|+|||||+||+|+|.++++.||+|++||||++ .+..+|.
T Consensus 286 ~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i-~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~ 364 (391)
T PF09334_consen 286 HFIGKDIIRFHAIYWPAMLLAAGLPLPRRI-VVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDS 364 (391)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHCTB---SEE-EEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-E
T ss_pred EEEccchhHHHHHHhHHHHhcccCCCCCEE-EeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999777777777 56799999999999999999999999999999999999999 4899999
Q ss_pred ccCHHHHHHHHH-----HHHHHHHHH
Q 013130 231 NYSVLQLDSASD-----AVFYIYQTL 251 (449)
Q Consensus 231 ~fs~~~l~~~~~-----~l~~l~~~~ 251 (449)
+|+++.+.++.| ++|||++|+
T Consensus 365 ~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 365 DFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp EE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 999999999876 479999885
No 25
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=342.96 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=174.2
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+|++++|..++++++.++.+. ||.++++ ||+++. +|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 485 ~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~ 563 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASA 563 (800)
T ss_pred CCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcC
Confidence 389999999999999999999999998875 7888855 599984 9999999999999999999999999999999977
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF---QEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~ 301 (449)
++++|++||++.+....+.+.+|+|.++.+.. +.+. .........|+++++.++.+.+.+.++| ++|+++.|++.
T Consensus 564 ~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~ 641 (800)
T PRK13208 564 RLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE 641 (800)
T ss_pred CCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999999999888888889988766542 2210 0001123357899999999999999999 89999999999
Q ss_pred HHHHHHH--HHHHHHhhhcccCchhhhh-hhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 302 AFQDALK--FINSSLNMLKKKQPKQQQL-SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 302 ~l~~l~~--~~N~yi~~~~pw~~~~~~~-~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++|+. .+|.|++..+||....+.. .+...+.++...|+.++.+|. |+|. .+++++++++
T Consensus 642 -i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~ 705 (800)
T PRK13208 642 -IESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY 705 (800)
T ss_pred -HHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHhCC
Confidence 999986 5999999999985222111 134456677788888888887 6777 7788888775
No 26
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=5.9e-37 Score=340.51 Aligned_cols=213 Identities=21% Similarity=0.238 Sum_probs=176.1
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+||+|||+.++++++.++++. ||.++++| |||+. +|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 477 ~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~ 555 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIH-GLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASL 555 (861)
T ss_pred CCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEe-eEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhC
Confidence 378999999999999999999999999875 77898665 99996 9999999999999999999999999999999986
Q ss_pred -CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--c--CCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHH
Q 013130 225 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ--E--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL 299 (449)
Q Consensus 225 -~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~--~--~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al 299 (449)
+.++|++|+++.+....+.+++|+|..+++...+.... + .......|+|+++.++.+.+.+.++| ++|+++.|+
T Consensus 556 ~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~ 634 (861)
T TIGR00422 556 VTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAA 634 (861)
T ss_pred CCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHH
Confidence 66999999999999988888899997666544333221 0 01123457899999999999999999 999999999
Q ss_pred HHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 300 TGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 300 ~~~l~~l~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
+. |++|+ ..+|.|++..+||....+.......+.++...|..++.+|. |+|. .++++++++.
T Consensus 635 ~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~-itEelw~~L~ 699 (861)
T TIGR00422 635 KA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPF-ITEEIWQHFK 699 (861)
T ss_pred HH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhCc
Confidence 99 99997 79999999999986322222234556677788888888887 6776 6788887774
No 27
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.4e-37 Score=309.02 Aligned_cols=227 Identities=22% Similarity=0.216 Sum_probs=169.6
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|+++|++|+++|+.+.+.|+++|++|||.+ |.|+|||+ |++.|++++++|.++|++|+++..++||+.+-.
T Consensus 51 ~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~-D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~ 129 (319)
T cd00814 51 TKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISF-DYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCER 129 (319)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCc
Confidence 589999999999999999999999999999999987 89999987 999999999999999999999999999987742
Q ss_pred c----------cccccCcc--cccccCCCCC-cccc-cccCccchhccccc--cCCCCcccC-CCCCCCCC--------c
Q 013130 79 N----------YGRLSGQR--LENNRAGERV-AVDS-RKRNPADFALWKAA--KAGEPSWDS-PWGPGRPG--------W 133 (449)
Q Consensus 79 ~----------yg~ls~~~--l~~~~~g~~~-~~~~-~k~~~~Df~lwk~~--~~~~~~w~s-~WG~grPg--------W 133 (449)
. |.+|+... |.+....... .+.+ .++ ...-|-.. ++-.++++. .||+++|+ |
T Consensus 130 ~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~---~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvW 206 (319)
T cd00814 130 FLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARN---EVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVW 206 (319)
T ss_pred EeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHH---HHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEe
Confidence 2 22232210 1111111110 0000 000 00002211 011145666 78888875 6
Q ss_pred hhhhHHHHH------------hhc--CCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccC
Q 013130 134 HIECSAMSA------------HYL--SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL 199 (449)
Q Consensus 134 h~e~~~~~~------------~~~--g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl 199 (449)
+.....++. .+| +++.+||++|+|+++||+++|||++++++.+++. .+++|||++++|+|||||+
T Consensus 207 fda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~-~~~~~~~~~~~g~kmSkS~ 285 (319)
T cd00814 207 FDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLPLPT-RIVAHGYLTVEGKKMSKSR 285 (319)
T ss_pred hhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCCCCc-EeeeeeeEEECCeeecccC
Confidence 543222211 012 4588999999999999999999999998755555 5588899999999999999
Q ss_pred CCccCHHHHHHhcChhHHHHHHhhc-CcCCCccc
Q 013130 200 GNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 232 (449)
Q Consensus 200 GN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 232 (449)
||+|+|.++++.||+|++|||+++. +..+|.||
T Consensus 286 gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 286 GNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999995 88999987
No 28
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-35 Score=326.08 Aligned_cols=210 Identities=16% Similarity=0.194 Sum_probs=175.1
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+||+|||....++++.++.+. ||.++++| |+|+ .+|+|||||+||||+|.+++++||+|++|||+++.
T Consensus 472 ~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~ 550 (874)
T PRK05729 472 YPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAAL 550 (874)
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhC
Confidence 388999999999999999998888888775 77899776 9998 59999999999999999999999999999999985
Q ss_pred -CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-----CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHH
Q 013130 225 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298 (449)
Q Consensus 225 -~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~a 298 (449)
++++|++|+++.+....+.+++|+|..+++...+...... ......|+|++..++.+.+.+.++| ++|+++.|
T Consensus 551 ~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a 629 (874)
T PRK05729 551 ASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEA 629 (874)
T ss_pred CCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHH
Confidence 8999999999999988888899999776654333222111 1123457899999999999999999 89999999
Q ss_pred HHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 299 LTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 299 l~~~l~~l~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++. |++|+ ..+|.|++..+||. . +. .....+.++...++.++.+|. |+|. .++++++++.
T Consensus 630 ~~~-l~~f~~~~~~~~Yle~~k~~l-~-~~-~~~~~~~~l~~~l~~~~~lL~Pf~Pf-itEelw~~l~ 692 (874)
T PRK05729 630 ARA-LYEFIWNEFCDWYLELAKPVL-Q-EA-AKRATRATLAYVLEQILRLLHPFMPF-ITEELWQKLA 692 (874)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHh-h-hh-HHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhcc
Confidence 999 99998 58999999999995 2 21 134456677788888899997 6777 7788888775
No 29
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=6.7e-33 Score=308.86 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=167.5
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccC-CCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 224 (449)
+|.|+|++|+||++||+.+|++++.|..+ .++++.|+|||||+.+|+|||||+||||+|.+++++||+|++||||++.
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 48999999999999999999999988865 4677778999999999999999999999999999999999999999995
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHH-HHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAF 303 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al-~~~l 303 (449)
++++|++|+++.+.++.+.+.+++|.+.++........ .......|+++++.++.+.+.+.++| ++|+++.|+ .. +
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~-~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l 728 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNLET-GEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-L 728 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-H
Confidence 99999999999999999999999998876544322100 00123457899999999999999999 899999999 77 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 304 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 304 ~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++++..+|.|+...++ . .. ..+...|+.++.+|. |+|. .+++++++++
T Consensus 729 ~~~~~~~n~Yl~~~~~----~----~~---~~l~~~l~~~~~LLaP~~P~-~aEeiw~~Lg 777 (938)
T TIGR00395 729 FDLQADVDWYRRRGGV----N----HK---DVLARYLETWIKLLAPFAPH-FAEEMWEEVG 777 (938)
T ss_pred HHHHHHHHHHHHhCcc----h----HH---HHHHHHHHHHHHHhcCcccH-HHHHHHHHcC
Confidence 9999999999875331 0 11 135577777888887 6776 6788887774
No 30
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.4e-35 Score=290.27 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=167.9
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCc--cccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTY--QPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~--~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+||+.+|++.|++|+++|++|++.|+++|++|||.+ |. +.+|++ |++.|+.+|.+|.++|+||++++.+|||+..
T Consensus 51 ~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~-d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (314)
T cd00812 51 LPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSY-DWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLL 129 (314)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccce-ecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCcc
Confidence 589999999999999999999999999999999986 64 556654 8889999999999999999999999999765
Q ss_pred CCccccc--cCc--ccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCC-chhhhHHH--------HH-
Q 013130 77 SPNYGRL--SGQ--RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPG-WHIECSAM--------SA- 142 (449)
Q Consensus 77 ~~~yg~l--s~~--~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPg-Wh~e~~~~--------~~- 142 (449)
-.-|.++ +.. .+.+.+.....-....+ ..+..|.. ++++.+||+++|+ |+++|-.. ..
T Consensus 130 ~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~---~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~ 201 (314)
T cd00812 130 DQWFLKYSETEWKEKLLKDLEKLDGWPEEVR---AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDA 201 (314)
T ss_pred ceEEEEcCcHHHHHHHHHHHHhcCcCCHHHH---HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhc
Confidence 4334455 211 11111111110000111 12333543 6778899999994 66666321 10
Q ss_pred ------------------hhcCCCccEEeecccCcCchh---HHHHHHHhhccC---CCCCcEEEeeeeeeeCCcccccc
Q 013130 143 ------------------HYLSSKFDIHGGGIDLIFPHH---ENEIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKS 198 (449)
Q Consensus 143 ------------------~~~g~~~Dih~~GkDli~~H~---~~~~a~~~a~~~---~~~~~~~~h~g~l~~~G~KMSKS 198 (449)
.+| +|.|||++|+|+++||+ .++++++.+++. .++.++ ++||||+++|+|||||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~w-~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS 279 (314)
T cd00812 202 HNLEQPYEGDLEFDREEFEYW-YPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKS 279 (314)
T ss_pred ccccCcchhhhhhhHHHHHHh-CCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCc
Confidence 112 37899999999999998 677777777763 566677 5789999999999999
Q ss_pred CCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCH
Q 013130 199 LGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSV 234 (449)
Q Consensus 199 lGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~ 234 (449)
+||+|+|.|++++||+|++|||+++... .|.+|++
T Consensus 280 ~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 280 KGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred CCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 9999999999999999999999999755 8998874
No 31
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7e-33 Score=310.69 Aligned_cols=212 Identities=14% Similarity=0.147 Sum_probs=167.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+||++||....+++...+.+. ||.++++ ||||+. +|+|||||+||||+|.+++++||+|++||||++.
T Consensus 490 ~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~-hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~ 568 (1052)
T PRK14900 490 YPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYL-HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAAL 568 (1052)
T ss_pred CCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEe-cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 378999999999998877777776666665 6788855 599997 9999999999999999999999999999999984
Q ss_pred -CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHH
Q 013130 225 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSH 297 (449)
Q Consensus 225 -~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~ 297 (449)
++++|++||++.+....+.+++|+|..+.+...+..+... ......|.|+++.++.+..++.++| ++|+++.
T Consensus 569 ~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~ 647 (1052)
T PRK14900 569 TAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFND 647 (1052)
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHH
Confidence 8999999999999777777788888655443333332110 1113457899999999999999999 9999999
Q ss_pred HHHHHHHHHH--HHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 298 ILTGAFQDAL--KFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 298 al~~~l~~l~--~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++. |++|+ ..+|.||+..+||. .+.+ ......+..+...|+.++.+|. |+|. .+++++++++
T Consensus 648 A~~~-i~~f~~~~~~n~Yie~~k~~l-~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~-~aEeiw~~L~ 714 (1052)
T PRK14900 648 AANA-VYAFVWHELCDWYIELAKEAL-ASEDPEARRSVQAVLVHCLQTSYRLLHPFMPF-ITEELWHVLR 714 (1052)
T ss_pred HHHH-HHHHHHHhhhHHHHHhccHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHhc
Confidence 9999 99997 59999999998864 2222 1223345566677777888886 6777 7888888874
No 32
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=306.22 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=167.5
Q ss_pred CCccEEeecccCcC--chhHHHHHHHhhccCCCCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 147 SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 147 ~~~Dih~~GkDli~--~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
+|.|+|++|+||+| ||+.+++++++ .+..||.+++ .||||+. +|+|||||+||||+|.+++++||+|++|||+++
T Consensus 544 ~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl-~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVL-THGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccchHHHHHHHHHHHh-cCCCccceeE-EeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh
Confidence 58999999999998 55777777765 3446888885 5599996 999999999999999999999999999999999
Q ss_pred cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHH
Q 013130 224 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSH 297 (449)
Q Consensus 224 ~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~ 297 (449)
+++++|++|+.+.+.+..+.+.+|+|.++++...+..+.+. ......|+++++.++++.+++.++| ++|++++
T Consensus 622 ~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~~ 700 (912)
T PRK05743 622 TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAY-ENYDFHK 700 (912)
T ss_pred cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHH
Confidence 89999999999999988888888999988777665443211 1123468899999999999999999 9999999
Q ss_pred HHHHHHHHHH--HHHHHHHhhhccc--CchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 298 ILTGAFQDAL--KFINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 298 al~~~l~~l~--~~~N~yi~~~~pw--~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++. |++|+ ..+|.|++..+|| ...++...+......+...+..++.+|. |+|. .++++++++.
T Consensus 701 a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~aEelw~~l~ 769 (912)
T PRK05743 701 VYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-TAEEIWQYLP 769 (912)
T ss_pred HHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHhcc
Confidence 9999 99999 5779999999995 3222222122222233445555677776 6776 7788888773
No 33
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-32 Score=302.40 Aligned_cols=213 Identities=17% Similarity=0.162 Sum_probs=170.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|+.|+||+|||..+..++...+.+. ||.++|+| |+++ .+|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 535 yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~ 613 (958)
T PLN02943 535 YPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALG 613 (958)
T ss_pred CCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhC
Confidence 378999999999998777666666655565 88999887 6665 69999999999999999999999999999999998
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------cccC---CCCCCCChhHHHHHHHHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP--------------FQEH---GKTARINPAAEDCINKLRDEFHA 287 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~--------------~~~~---~~~~~~d~~l~~~l~~~~~~v~~ 287 (449)
++++|++|+++.|....+.+++|+|..+++...+.. +.+. ......|+|+++.++.+.+++.+
T Consensus 614 ~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~ 693 (958)
T PLN02943 614 TAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTT 693 (958)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888889999988776544321 1100 01134578999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHH--HHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 288 RMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 288 a~~dd~~~~~al~~~l~~l~--~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
+| ++|+++.|++. +++|+ ..+|.|++..+||.-...+ .........+...+..++.+|. |+|. .++++++++.
T Consensus 694 ~~-e~y~f~~A~~~-i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPf-itEELwq~L~ 770 (958)
T PLN02943 694 SY-DKYFFGDVGRE-IYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPF-VTEELWQALP 770 (958)
T ss_pred HH-HhcChhHHHHH-HHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchh-HHHHHHHHcC
Confidence 99 99999999999 99995 7999999999997522111 1123445566677788888887 7787 7788888874
No 34
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.1e-33 Score=282.38 Aligned_cols=226 Identities=17% Similarity=0.176 Sum_probs=164.1
Q ss_pred ChhHHHHHHc---------CCChH-------HHHHHHHHHHHHHHhhCCCCCCC--ccccccc--cHHHHHHHHHHHHHc
Q 013130 1 MQIIRRANDL---------GENPL-------SLSNRYCQEYLVDMADLQCLPPT--YQPRVSD--HMEQIKDMITQIINN 60 (449)
Q Consensus 1 ~KI~~~A~~~---------g~~~~-------e~~~~~~~~f~~~~~~L~I~~~d--~~~rtt~--h~~~v~~~i~~L~~~ 60 (449)
+||+..|.++ +++|+ ++|++|++.|+++|++|||.. | .|.+|++ |.+.|+.+|.+|+++
T Consensus 52 ~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~ 130 (382)
T cd00817 52 IATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASV-DWSREYFTMDPGLSRAVQEAFVRLYEK 130 (382)
T ss_pred ChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcee-ecCCCcCCCCHHHHHHHHHHHHHHHHC
Confidence 4677777664 56655 589999999999999999997 5 7888886 999999999999999
Q ss_pred CCeEeecCcEEEeCCCCCccccccCcccccccCCCCCcc------------------cccccCccc---------hhccc
Q 013130 61 DCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAV------------------DSRKRNPAD---------FALWK 113 (449)
Q Consensus 61 G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~~g~~~~~------------------~~~k~~~~D---------f~lwk 113 (449)
|+||.+.+.+|||+.+-..+.. ..+.+ .+|.+++. +..+.++.. +.-|-
T Consensus 131 G~iy~~~~~~~yc~~~~t~l~~---~evc~-~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l 206 (382)
T cd00817 131 GLIYRDNRLVNWCPKLRTAISD---IEVCS-RSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWL 206 (382)
T ss_pred CCEEeeeeEEeecCCcCCCCCc---chhcc-cCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHH
Confidence 9999999999999987432211 11100 12222211 001111100 00021
Q ss_pred cc-cCCCCcccCCCCCCCCCchhh--------------------------------------------hHHHHH--hh--
Q 013130 114 AA-KAGEPSWDSPWGPGRPGWHIE--------------------------------------------CSAMSA--HY-- 144 (449)
Q Consensus 114 ~~-~~~~~~w~s~WG~grPgWh~e--------------------------------------------~~~~~~--~~-- 144 (449)
.. ++-.++++..||+++|.|+.+ +++... .|
T Consensus 207 ~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~ 286 (382)
T cd00817 207 ENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPE 286 (382)
T ss_pred hhCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCC
Confidence 11 111246678999999977532 111111 11
Q ss_pred ----c--CCCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhH
Q 013130 145 ----L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLA 216 (449)
Q Consensus 145 ----~--g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~ 216 (449)
+ -+|.|+|++|+||++|||.+++++++++.+. |+.++++| |+|+ .+|+|||||+||+|+|.|++++||+|+
T Consensus 287 ~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da 365 (382)
T cd00817 287 ETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADA 365 (382)
T ss_pred cchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHH
Confidence 1 1388999999999999999999999998775 56888766 8888 699999999999999999999999999
Q ss_pred HHHHHhhc-CcCCCccc
Q 013130 217 LRHFLISA-HYRSPLNY 232 (449)
Q Consensus 217 lR~~ll~~-~~~~d~~f 232 (449)
+|||+++. ++++|.+|
T Consensus 366 ~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 366 LRFTLASAATQGRDINL 382 (382)
T ss_pred HHHHHHhCCCccCCCCC
Confidence 99999985 79999887
No 35
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.9e-31 Score=258.08 Aligned_cols=359 Identities=14% Similarity=0.096 Sum_probs=256.8
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-- 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-- 76 (449)
+++.-+|.++|++|+|+|++|+..++..++-++|.+ |.|.|||. |-+..|.++.+|+++||.-+..-.+.||.-+
T Consensus 66 tatetkaleeg~tP~elcdKyh~ihk~vy~Wf~Idf-D~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~ 144 (567)
T KOG1247|consen 66 TATETKALEEGLTPQELCDKYHGIHKVVYDWFKIDF-DEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDT 144 (567)
T ss_pred hhhHHHHHHccCCHHHHHHhcchhHHHHHHhhcccc-cccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcc
Confidence 367889999999999999999999999999999999 99999984 6678999999999999998887667776432
Q ss_pred C----------C--ccccccCcccc------------c---ccCCCCCc----------ccc--------cccCc--cch
Q 013130 77 S----------P--NYGRLSGQRLE------------N---NRAGERVA----------VDS--------RKRNP--ADF 109 (449)
Q Consensus 77 ~----------~--~yg~ls~~~l~------------~---~~~g~~~~----------~~~--------~k~~~--~Df 109 (449)
| | .|+.-.|-..+ + .++.+... ++. .+++. .|+
T Consensus 145 fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~W 224 (567)
T KOG1247|consen 145 FLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDW 224 (567)
T ss_pred cccchhhhccCCCCCCccccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCC
Confidence 2 1 23222111111 0 01111100 000 11111 111
Q ss_pred h--------ccccc--cCCCCcccCCCCCCCCC----------chhhh----------HHHHHhhcCCCc---cEEeecc
Q 013130 110 A--------LWKAA--KAGEPSWDSPWGPGRPG----------WHIEC----------SAMSAHYLSSKF---DIHGGGI 156 (449)
Q Consensus 110 ~--------lwk~~--~~~~~~w~s~WG~grPg----------Wh~e~----------~~~~~~~~g~~~---Dih~~Gk 156 (449)
. -|-+. +|..+++|..||.++|- |++.- ..-+.++|..|- -.++.||
T Consensus 225 S~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgK 304 (567)
T KOG1247|consen 225 SQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGK 304 (567)
T ss_pred ccchHHHHHHHHHccccccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhcc
Confidence 1 03211 23346889999999993 76422 234456676664 4789999
Q ss_pred cCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHH-hcChhHHHHHHhhc-CcCCCcccC
Q 013130 157 DLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYS 233 (449)
Q Consensus 157 Dli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs 233 (449)
|++.||.+.+|+...+.+.+ +..+.+....+|+.+..|+|||+|-.|.-.++-+ ..+++..|||||+. |..+|..||
T Consensus 305 DNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fs 384 (567)
T KOG1247|consen 305 DNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFS 384 (567)
T ss_pred CCCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCc
Confidence 99999999999999887654 5566667788999999999999999998888776 47999999999995 999999999
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHH-HHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 013130 234 VLQLDSAS-----DAVFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 307 (449)
Q Consensus 234 ~~~l~~~~-----~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~ 307 (449)
|+++.... ++|||++||+..+ ....++..+.-.....+..+++.++.+..++.++| +.-.+.+|++. +|++.
T Consensus 385 w~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is 462 (567)
T KOG1247|consen 385 WDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEIS 462 (567)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 99998876 4689999986544 33444443322223347889999999999999999 99999999999 99999
Q ss_pred HHHHHHHhhhcccCchhhhhh-hHHHHHHHHHHHHHHHHHh-cCCCCCChhHHHHHHH
Q 013130 308 KFINSSLNMLKKKQPKQQQLS-LIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLK 363 (449)
Q Consensus 308 ~~~N~yi~~~~pw~~~~~~~~-~~~~l~~~~~~l~~~l~il-gi~~~~~~~~~~~~~~ 363 (449)
+..|.|++...-|+....+.. +..++...+..+..+..+| .+||. .+.+++.|++
T Consensus 463 ~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~-~s~~I~kqln 519 (567)
T KOG1247|consen 463 RRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPT-TSAEILKQLN 519 (567)
T ss_pred HhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhcccccc-chHHHHHHhC
Confidence 999999999987764433322 2222222333333333444 37887 7788887774
No 36
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.1e-30 Score=292.41 Aligned_cols=212 Identities=18% Similarity=0.222 Sum_probs=166.0
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccC-CCCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+|+++||.....+++.++++ .||.++++ ||+|+. +|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~ 622 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSS 622 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhC
Confidence 37899999999999988887777777776 48888865 599986 9999999999999999999999999999999996
Q ss_pred -CcCCCcccCHHHHHH-HHHHHHHHHHHHHHHHHh--cCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhccC
Q 013130 225 -HYRSPLNYSVLQLDS-ASDAVFYIYQTLQDCEVA--LSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 294 (449)
Q Consensus 225 -~~~~d~~fs~~~l~~-~~~~l~~l~~~~~~~~~~--~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~ 294 (449)
+.++|++||++.+.. ..+.+++|+|.++++..+ +.++.+. ......|+|+++.++.+...+.++| ++|+
T Consensus 623 ~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~-e~y~ 701 (975)
T PRK06039 623 SAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEAL-DNYD 701 (975)
T ss_pred CCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccC
Confidence 569999999999544 456678888887765422 2221111 1112457899999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhh--cccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 295 TSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 295 ~~~al~~~l~~l~~~~-N~yi~~~--~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++.|++. |++|+..+ |.|++.. .||...+. ......+.++...|..++.+|. |+|. .++++++.++
T Consensus 702 ~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~~-~~~~~a~~~L~~~L~~l~~lLaPf~Pf-~aEei~~~L~ 771 (975)
T PRK06039 702 ITKAARA-IRDFVDDLSNWYIRRSRRRFWKEEDD-PDKLAAYATLYTVLETLSRLAAPFTPF-IAEEIYQNLT 771 (975)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhcc
Confidence 9999999 99999764 8899876 45864322 2223445566677778888887 6776 6778887775
No 37
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.97 E-value=1e-30 Score=293.82 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=173.6
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHH--------------
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-------------- 210 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~-------------- 210 (449)
+|.|+|++|+||+|||....++++.++.+. ||.+++ +||+|.. +|+|||||+||||+|.++++
T Consensus 537 ~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~-~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~ 615 (995)
T PTZ00419 537 FPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVF-LHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEG 615 (995)
T ss_pred CCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHh-ccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcc
Confidence 378999999999999988888888888775 678885 5599997 99999999999999999999
Q ss_pred -----------------------hcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC--
Q 013130 211 -----------------------RYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-- 264 (449)
Q Consensus 211 -----------------------~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~-- 264 (449)
+||+|++|||+++ ++.++|++|+.+.+....+.+.+|||.++++..++......
T Consensus 616 ~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~ 695 (995)
T PTZ00419 616 NLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPN 695 (995)
T ss_pred ccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 8999999999998 48899999999999988788889999988876554332110
Q ss_pred ---------CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HHHHHHHHhhhcccCch-hhhhhhHHH
Q 013130 265 ---------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPK-QQQLSLIES 332 (449)
Q Consensus 265 ---------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l--~~~~N~yi~~~~pw~~~-~~~~~~~~~ 332 (449)
......|+|+++.++.+.+.+.++| ++|+++.|++. |++| ...+|.|++..+||... .+.......
T Consensus 696 ~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~ 773 (995)
T PTZ00419 696 STLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQHA 773 (995)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHH
Confidence 0112357899999999999999999 89999999999 9997 46899999999999611 111223345
Q ss_pred HHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 333 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 333 l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
..++...|+.++.+|. |+|. .++++++.+.
T Consensus 774 ~~~L~~vL~~~l~LL~PfmPf-itEElw~~L~ 804 (995)
T PTZ00419 774 QDVLHTVLDIGLRLLHPMMPF-ITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hHHHHHHhhh
Confidence 5566777888888887 6777 7788888774
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=3.5e-31 Score=264.72 Aligned_cols=227 Identities=21% Similarity=0.257 Sum_probs=156.6
Q ss_pred ChhHHHHHHc-CCCh----------------HHHHHHHHHHHHHHHhhCCCCCC-Cccccc--cccHHHHHHHHHHHHHc
Q 013130 1 MQIIRRANDL-GENP----------------LSLSNRYCQEYLVDMADLQCLPP-TYQPRV--SDHMEQIKDMITQIINN 60 (449)
Q Consensus 1 ~KI~~~A~~~-g~~~----------------~e~~~~~~~~f~~~~~~L~I~~~-d~~~rt--t~h~~~v~~~i~~L~~~ 60 (449)
++|..+|.+. |+++ +++|++|++.|+++|++|||..+ +.+.+| ++|++.|+++|.+|+++
T Consensus 52 ~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~ 131 (338)
T cd00818 52 LPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEK 131 (338)
T ss_pred chhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHC
Confidence 4677788776 8765 79999999999999999999654 334444 46999999999999999
Q ss_pred CCeEeecCcEEEeCCCC--Cc-cccccCcc--cccccCCCCCcccccccCccchhccccc-cCCCCcccCCCCCCCCCch
Q 013130 61 DCAYVVEGDVFFAVEKS--PN-YGRLSGQR--LENNRAGERVAVDSRKRNPADFALWKAA-KAGEPSWDSPWGPGRPGWH 134 (449)
Q Consensus 61 G~aY~~~g~~yf~~~~~--~~-yg~ls~~~--l~~~~~g~~~~~~~~k~~~~Df~lwk~~-~~~~~~w~s~WG~grPgWh 134 (449)
|+||.+.+.|||.+.-- .+ |-+++... +.+.....+.-....+.-..+ |-.. ++-.++++..||++.|.|.
T Consensus 132 G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~---~l~~l~dw~iSR~~~WGip~P~~~ 208 (338)
T cd00818 132 GLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGN---WLENRRDWCISRQRYWGTPIPVWY 208 (338)
T ss_pred CCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHH---HHhcchhcceeeecccCceeeEEE
Confidence 99999999999943211 11 23333211 111111111000111111112 2211 1112456778999999775
Q ss_pred hh-h-------------------H-HHHH-hh------c--CCCccEEeecccCcC--chhHHHHHHHhhccCCCCCcEE
Q 013130 135 IE-C-------------------S-AMSA-HY------L--SSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYW 182 (449)
Q Consensus 135 ~e-~-------------------~-~~~~-~~------~--g~~~Dih~~GkDli~--~H~~~~~a~~~a~~~~~~~~~~ 182 (449)
++ | . .++. .+ + .+|.|+|+.|+||++ ||...+++++ +.+..||.+++
T Consensus 209 ~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~ 287 (338)
T cd00818 209 CEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVI 287 (338)
T ss_pred ecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEE
Confidence 43 2 0 1111 11 1 147899999999997 8888888875 33346789997
Q ss_pred Eeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCccc
Q 013130 183 MHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 232 (449)
Q Consensus 183 ~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 232 (449)
+| |+++. +|+|||||+||+|+|.|+++.||+|++||||++. ++++|++|
T Consensus 288 ~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 288 VH-GFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred EE-eeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 76 77764 8999999999999999999999999999999986 79999876
No 39
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.5e-30 Score=272.54 Aligned_cols=231 Identities=18% Similarity=0.228 Sum_probs=190.2
Q ss_pred CCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCcc
Q 013130 126 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFF 203 (449)
Q Consensus 126 WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i 203 (449)
|....-||+-+ +....+|. |.|+-+.|-||||||..+.+.+++.+++. ||..+++| |++.. +|+|||||+||||
T Consensus 459 wPfstlgWp~~-t~~l~~fy--Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ih-GLVrDe~G~KMSKS~GNvI 534 (877)
T COG0525 459 WPFSTLGWPEE-TPDLKKFY--PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIH-GLVRDEQGRKMSKSKGNVI 534 (877)
T ss_pred ccccccCCCCc-chHHHhcC--CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEe-eeEEcCCCCCCcccCCCcC
Confidence 56666678776 44455555 89999999999999999999999999884 99999665 99985 8999999999999
Q ss_pred CHHHHHHhcChhHHHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC----CCCCChhHHHHH
Q 013130 204 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK----TARINPAAEDCI 278 (449)
Q Consensus 204 ~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~----~~~~d~~l~~~l 278 (449)
+|.++|++||+|+|||++++. +.++|++|+++.+....|.+++|||..+++..++........ ....|+|++..+
T Consensus 535 DP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l 614 (877)
T COG0525 535 DPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRL 614 (877)
T ss_pred CHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHH
Confidence 999999999999999999985 999999999999999999999999998887655433321111 136789999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCCh
Q 013130 279 NKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAY 355 (449)
Q Consensus 279 ~~~~~~v~~a~~dd~~~~~al~~~l~~l~~--~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~ 355 (449)
+++...++++| ++|+|..|.+. |++|+. .|+.|++..+|-.-.. ..+......++..+|..++++|. |+|- -+
T Consensus 615 ~~~v~~v~~~l-d~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPf-iT 690 (877)
T COG0525 615 NETVKEVTEAL-DNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLYGG-EEEKRAARATLYYVLDTLLRLLHPFMPF-IT 690 (877)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhcCc-HHHHHHHHHHHHHHHHHHHHHhCCCCcc-ch
Confidence 99999999999 99999999999 999986 7899999998743111 22233556677788899999997 7776 66
Q ss_pred hHHHHHHHH
Q 013130 356 SEVLQQLKD 364 (449)
Q Consensus 356 ~~~~~~~~~ 364 (449)
+++.+.+..
T Consensus 691 Eei~q~l~~ 699 (877)
T COG0525 691 EEIWQKLPG 699 (877)
T ss_pred HHHHHhcCC
Confidence 777776643
No 40
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.4e-29 Score=264.43 Aligned_cols=304 Identities=16% Similarity=0.121 Sum_probs=225.3
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeE-eecCcEEEeCCCCC
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSP 78 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY-~~~g~~yf~~~~~~ 78 (449)
+|...|...+..++++++.+.+.|+++|+.|||.+ |.|+++++ |.+.++++++.|.++|++| +.+|.+||+++.|.
T Consensus 163 qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~~-D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~ 241 (507)
T PRK01611 163 QIGMLIASLELLWRKAVDISLDEIKEDLDRLGVHF-DVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFG 241 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhC
Confidence 56667777788999999999999999999999998 88888886 5678999999999999999 88999999887652
Q ss_pred ccccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccC
Q 013130 79 NYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 158 (449)
Q Consensus 79 ~yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDl 158 (449)
+ +.|++|||+ +|.++|.++ -++||++|... ++ .-|.+.|.|
T Consensus 242 ~--------------------------~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d--~~i~V~g~~- 282 (507)
T PRK01611 242 D--------------------------DKDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FD--RVIYVVGAD- 282 (507)
T ss_pred C--------------------------CCCeEEEEC--CCCccchHH----HHHHHHHHHhh----cC--EEEEEECCC-
Confidence 1 028899986 777776443 45677776533 33 345566666
Q ss_pred cCchhHHHH---HHHhhccCCCC-CcEEEee--eeeee-CCccccccCCCccCHHHHHHh-cCh----------------
Q 013130 159 IFPHHENEI---AQSCAACQDSN-VSYWMHN--GHVTN-NNEKMSKSLGNFFTIRQITER-YHP---------------- 214 (449)
Q Consensus 159 i~~H~~~~~---a~~~a~~~~~~-~~~~~h~--g~l~~-~G~KMSKSlGN~i~~~dll~~-yg~---------------- 214 (449)
|+.+.+ +.+.+++..+. .++++|. |++.. +|+|||||+||+|+|.|++++ +|.
T Consensus 283 ---q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgi 359 (507)
T PRK01611 283 ---HHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGI 359 (507)
T ss_pred ---hHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 555544 34444544333 3556773 44443 678999999999999999999 999
Q ss_pred hHHHHHHhhcCcCCCcccCHHHHHHHHH--HH--HHHHHHHHHHHHhcC--Cccc--CCCCCCCChhHHHHHHHHHHHHH
Q 013130 215 LALRHFLISAHYRSPLNYSVLQLDSASD--AV--FYIYQTLQDCEVALS--PFQE--HGKTARINPAAEDCINKLRDEFH 286 (449)
Q Consensus 215 D~lR~~ll~~~~~~d~~fs~~~l~~~~~--~l--~~l~~~~~~~~~~~~--~~~~--~~~~~~~d~~l~~~l~~~~~~v~ 286 (449)
|++||++|+.+.++|++|+++.+....+ .. ..-+.|+..+..... .... .....+.+.+++..+..+.+.+.
T Consensus 360 dAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~ 439 (507)
T PRK01611 360 DAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVE 439 (507)
T ss_pred ceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876642 11 111112222221111 0000 01113456789999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchh---hhhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 287 ARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 287 ~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~---~~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
+++ ++++++.++.. +++|+..+|.|++.. | .... -..++..++.++..+|...|.+|||.+.
T Consensus 440 ~a~-~~~~p~~l~~y-l~~la~~f~~fY~~~-~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 440 SAA-EELEPHRIANY-LYELAGAFHSFYNRV-L-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HHH-HhCCcHHHHHH-HHHHHHHHHHHHHHC-C-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999 99999999999 999999999999755 3 2111 1135777888999999999999999764
No 41
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.97 E-value=2e-28 Score=269.17 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=147.7
Q ss_pred CCccEEeecccCcCchhHHHHHHH-----hh-ccC-CCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQS-----CA-ACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRH 219 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~-----~a-~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~ 219 (449)
.|+|+.++|.|++..|..|..... ++ ..+ .||.++ +||||+ |||||+||||+|.+++++||+|++||
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl 595 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARL 595 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHH
Confidence 489999999998755544433222 11 123 588887 888999 99999999999999999999999999
Q ss_pred HHhh-cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHH
Q 013130 220 FLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298 (449)
Q Consensus 220 ~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~a 298 (449)
|+++ ++|++|++|+++.+.++.+.+.++++.+.........+. ......|++++..++.+.+++.++| ++|+++.|
T Consensus 596 ~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~a 672 (805)
T PRK00390 596 FEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--VAALSEDKELRRKLHKTIKKVTEDI-ERLRFNTA 672 (805)
T ss_pred HHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--cccChhhHHHHHHHHHHHHHHHHHH-HcCCHHHH
Confidence 9998 599999999999999999999999998876332222211 1123467999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 299 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 299 l~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
++. |++|+..+++|.... ... ++...+..++.+|. |+|- .++++++.+
T Consensus 673 i~~-l~~f~n~lsk~~~~~-----------~~~---~l~~~l~~l~~lLaPf~P~-iaEElw~~L 721 (805)
T PRK00390 673 IAA-LMELVNALYKAEDEQ-----------DKA---VLREALEILVRLLAPFAPH-LAEELWEKL 721 (805)
T ss_pred HHH-HHHHHHHHHHHHHHH-----------HHH---HHHHHHHHHHHHHhhhhhH-HHHHHHHHc
Confidence 999 999999998887210 112 34466677788887 5665 566666655
No 42
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.96 E-value=5.1e-29 Score=277.82 Aligned_cols=213 Identities=21% Similarity=0.198 Sum_probs=172.6
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHH---------hcChh
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYHPL 215 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~---------~yg~D 215 (449)
+|.|+|+.|+||+|+|+.....+++++.+. ||+++|+| ||++. +|+|||||+||||+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 589999999999998888888888888775 88999887 77775 89999999999999999999 79999
Q ss_pred HHHHHHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-----CCCCCCChhHHHHHHHHHHHHHHHHH
Q 013130 216 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMS 290 (449)
Q Consensus 216 ~lR~~ll~~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a~~ 290 (449)
++|||+++.+|++|++|+.+.+.++.+.+.+|+|.++++.+.+..+.+. ......|+|+++.++.+.+++.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999998877766554321 1112458899999999999999999
Q ss_pred hccCHHHHHHHHHHHH--HHHHHHHHhhhcccCchh--hhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 291 DDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 291 dd~~~~~al~~~l~~l--~~~~N~yi~~~~pw~~~~--~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++|++++|++. |++| ...+|.||+..+||.... ++..+...-.++...+..++.+|. |+|. .++++++++.
T Consensus 721 e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~ 796 (974)
T PLN02843 721 DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLP 796 (974)
T ss_pred HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcc
Confidence 99999999999 9988 569999999999985222 221122222223344555667776 6777 7788888774
No 43
>PLN02882 aminoacyl-tRNA ligase
Probab=99.96 E-value=3.9e-29 Score=281.76 Aligned_cols=214 Identities=16% Similarity=0.182 Sum_probs=175.7
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|+.|+|++++|.....+++.++++. ||.++ ++||||+. +|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~V-ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s 644 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNL-ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINS 644 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCccee-EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhC
Confidence 589999999999999988778888888775 66666 67799998 8999999999999999999999999999999987
Q ss_pred Cc--CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCC--------cccCC------CCCCCChhHHHHHHHHHHHHHH
Q 013130 225 HY--RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSP--------FQEHG------KTARINPAAEDCINKLRDEFHA 287 (449)
Q Consensus 225 ~~--~~d~~fs~~~l~~~~-~~l~~l~~~~~~~~~~~~~--------~~~~~------~~~~~d~~l~~~l~~~~~~v~~ 287 (449)
++ ++|++|+++.+.... +.+.++||+++++..++.. +.+.. .....|+|+++.++.+.+.+.+
T Consensus 645 ~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~ 724 (1159)
T PLN02882 645 PVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVRE 724 (1159)
T ss_pred CcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 55 688999999998765 4678888987776554422 22210 1134588999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHhhhcccCchhh-hhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHHH
Q 013130 288 RMSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKD 364 (449)
Q Consensus 288 a~~dd~~~~~al~~~l~~l~~-~~N~yi~~~~pw~~~~~-~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~~ 364 (449)
+| ++|++++|+.. |++|+. .+|.|++..+||...+. ...+...+.++.+.|+.++.+|. |+|. .+++++++++.
T Consensus 725 ~m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~~ 801 (1159)
T PLN02882 725 EM-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLRK 801 (1159)
T ss_pred HH-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhcc
Confidence 99 99999999999 999997 68999999999864332 23355677788888888888887 6777 78888888853
No 44
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=4e-29 Score=277.51 Aligned_cols=199 Identities=20% Similarity=0.201 Sum_probs=164.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-c
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 224 (449)
+|+|+|++|+||++||+.+++.++.++.+. |+++-+++||||+.+|+|||||+||||+|.+++++||+|++||||++ +
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 489999999999999999999998888764 67555688899999999999999999999999999999999999998 5
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 304 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~ 304 (449)
++++|++|+++.+....+.+.++++.+..+..... .......|+|+++.++.+.+.+.++| ++|+++.|+.. ++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~ 682 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AF 682 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----ccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HH
Confidence 99999999999999998888888887765432111 11123467899999999999999999 89999999988 64
Q ss_pred -HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 305 -DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 305 -~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
.+...+|.|++..+| .....+...++.++.+|. |+|. .++++++.++
T Consensus 683 ~~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L~ 731 (897)
T PRK12300 683 YELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKLG 731 (897)
T ss_pred HHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcC
Confidence 777899999987764 123345567777778887 6676 6777777764
No 45
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.96 E-value=1.3e-28 Score=274.62 Aligned_cols=214 Identities=17% Similarity=0.144 Sum_probs=170.2
Q ss_pred CCCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 146 SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 146 g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
.+|.|+|++|+||+++|......++.++.+. ||.++++| |||+. +|+|||||+||||+|.+++++||+|++|||+++
T Consensus 581 ~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls 659 (961)
T PRK13804 581 KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVAS 659 (961)
T ss_pred CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHh
Confidence 3589999999999985544456666777664 78899766 99986 999999999999999999999999999999999
Q ss_pred cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC------CCCCCChhHHHHHHHHHHHHHHHHHhccCHHH
Q 013130 224 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSH 297 (449)
Q Consensus 224 ~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~ 297 (449)
+++++|++||++.|....+.+.+|+|.++++...+..+.+.. .....|+++++.++.+.+.+.++| ++|++++
T Consensus 660 ~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~ 738 (961)
T PRK13804 660 VDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFKR 738 (961)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHHH
Confidence 899999999999998888888889998877766655443211 113357899999999999999999 9999999
Q ss_pred HHHHHHHHHH--HHHHHHHhhhcccCc--hhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 298 ILTGAFQDAL--KFINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 298 al~~~l~~l~--~~~N~yi~~~~pw~~--~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++. |++|+ ..+|.|++..+||.- ..++..+.....++...|+.++.+|. |+|. .+++++++++
T Consensus 739 a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~ 807 (961)
T PRK13804 739 IYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRY 807 (961)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcc
Confidence 9999 99998 358999999999741 11222222333344455666777776 6777 7888888886
No 46
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.96 E-value=9.2e-28 Score=264.59 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=148.1
Q ss_pred CCccEEeecccCcCchhHHHHHHHhh------ccC-CCCCcEEEeeeeeee-----CCc---------------------
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCA------ACQ-DSNVSYWMHNGHVTN-----NNE--------------------- 193 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a------~~~-~~~~~~~~h~g~l~~-----~G~--------------------- 193 (449)
.|+|+.+||+|++..|..|......+ +.+ .||.++ +.|||++. +|+
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 597 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGEL 597 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhccccccccccCCcc
Confidence 38999999999986665553332211 223 588888 56699986 788
Q ss_pred ------cccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cC
Q 013130 194 ------KMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ--EH 264 (449)
Q Consensus 194 ------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~--~~ 264 (449)
|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+..+.+.+.+|++.+..+...+.... ..
T Consensus 598 ~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~ 677 (842)
T TIGR00396 598 VVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTP 677 (842)
T ss_pred cccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 999999999999999999999999999996 599999999999999999999999999877654443211 11
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHH
Q 013130 265 GKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 343 (449)
Q Consensus 265 ~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~-~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~ 343 (449)
......|++++..++.+.+++.++| ++|+ ++.|++. +|+|+..+.++.. .. .+...+..+
T Consensus 678 ~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~~~~--------------~~---~l~~~l~~l 738 (842)
T TIGR00396 678 TILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYKAKK--------------DA---LYLEYLKGF 738 (842)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHhhhh--------------HH---HHHHHHHHH
Confidence 1123467899999999999999999 7877 9999999 9999976655321 01 234566677
Q ss_pred HHHhc-CCCCCChhHHHHHH
Q 013130 344 LRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 344 l~ilg-i~~~~~~~~~~~~~ 362 (449)
+.+|. |+|- .++++.+.+
T Consensus 739 l~lLaPf~Ph-iaEElW~~l 757 (842)
T TIGR00396 739 LTVLSPFAPH-LAEELWEKL 757 (842)
T ss_pred HHHHhhhhhH-HHHHHHHHh
Confidence 77777 5555 455555544
No 47
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.95 E-value=5.8e-27 Score=260.92 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=161.5
Q ss_pred CCccEEeecccCcC--chhHHHHHHHhhccC-CCCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHh
Q 013130 147 SKFDIHGGGIDLIF--PHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222 (449)
Q Consensus 147 ~~~Dih~~GkDli~--~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 222 (449)
+|.|+|++|+||++ ||...+++ +++.+ .||.++++ ||||+. +|+|||||+||+|+|.+++++||+|++|||++
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~--~~~~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll 639 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIG--TALFGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVA 639 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHH--HHHcCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHH
Confidence 37899999999999 55555555 44444 68888855 599986 99999999999999999999999999999999
Q ss_pred hcCcCCCcccCHHHHHHHHHHHHH-HHHHHHHHH--HhcCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhcc
Q 013130 223 SAHYRSPLNYSVLQLDSASDAVFY-IYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDL 293 (449)
Q Consensus 223 ~~~~~~d~~fs~~~l~~~~~~l~~-l~~~~~~~~--~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~ 293 (449)
+.++++|++|+++.+....+.+.| ++|.++++. ..+.++.+. ......|.+++..++.+.+.+.++| ++|
T Consensus 640 ~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~ 718 (861)
T TIGR00392 640 SSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKY 718 (861)
T ss_pred hCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 989999999999999887665544 455666554 444333211 1113457889999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHH--HHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 294 NTSHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 294 ~~~~al~~~l~~l~~~--~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
+++.|++. +++|+.. +|.|++..+| |...++...+ .....+...++.++.+|. |+|. .++++++++.
T Consensus 719 ~~~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~ 790 (861)
T TIGR00392 719 NFHKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLP 790 (861)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhcc
Confidence 99999999 9999875 8999998866 8644332212 334455566677777776 6777 7788888774
No 48
>PLN02563 aminoacyl-tRNA ligase
Probab=99.95 E-value=4.4e-26 Score=252.12 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=141.7
Q ss_pred CCccEEeecccCc-------CchhHHHHHHHhhccCCCCCcEEEeeeeee----------eCCc----------------
Q 013130 147 SKFDIHGGGIDLI-------FPHHENEIAQSCAACQDSNVSYWMHNGHVT----------NNNE---------------- 193 (449)
Q Consensus 147 ~~~Dih~~GkDli-------~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~----------~~G~---------------- 193 (449)
.|+|+++||.|+. +|||-....+....+..||.++ +.|||++ .+|+
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~l-l~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~ 693 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCL-VNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQE 693 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHH-hccceeecCccccceecCCCcCccccccccccccccc
Confidence 3899999999985 4444333333332234689998 5669997 3455
Q ss_pred -----------------------------cccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCcccCHHHHHHHHHH
Q 013130 194 -----------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA 243 (449)
Q Consensus 194 -----------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~~~ 243 (449)
|||||+||+|+|.+++++||+|++|||+|+. +..++.+|+.+.+..+.+.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rf 773 (963)
T PLN02563 694 KIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRF 773 (963)
T ss_pred ccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHH
Confidence 9999999999999999999999999999985 8899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCC--CCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013130 244 VFYIYQTLQDCEVALSPFQEHGK--TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 321 (449)
Q Consensus 244 l~~l~~~~~~~~~~~~~~~~~~~--~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~ 321 (449)
+.++|+.+......-..+.+... ....+.+++..++.+.+++.++| ++|+|+.|++. +|+|+..+++ |.
T Consensus 774 L~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y~FntAi~~-lmef~n~l~~-------~~ 844 (963)
T PLN02563 774 LGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-ESTRFNTAISA-MMEFTNAAYK-------WD 844 (963)
T ss_pred HHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHhC-------ch
Confidence 99999887543110001111110 11356889999999999999999 89999999999 9999876653 31
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 322 PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
.. ....+..++.+|. |+|- .++++++.+
T Consensus 845 ---------~~---~~~~l~~ll~LLaPf~Ph-iaEELW~~L 873 (963)
T PLN02563 845 ---------KV---PREAIEPFVLLLSPYAPH-LAEELWFRL 873 (963)
T ss_pred ---------HH---HHHHHHHHHHHHHhhhhh-HHHHHHHHc
Confidence 01 1245666677776 5665 556665555
No 49
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.94 E-value=2.6e-26 Score=258.24 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=172.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+.+.|.|++|+|......++.++++. ||.++++ ||||+. +|+|||||+||||+|.+++++||+|++|||+++.
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~Vlv-HG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~ 750 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLIC-NGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINS 750 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEE-ccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhc
Confidence 489999999999999999999999999985 7898855 599996 9999999999999999999999999999999985
Q ss_pred -Cc-CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCCcc--------c-----CCCCCCCChhHHHHHHHHHHHHHHH
Q 013130 225 -HY-RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQ--------E-----HGKTARINPAAEDCINKLRDEFHAR 288 (449)
Q Consensus 225 -~~-~~d~~fs~~~l~~~~-~~l~~l~~~~~~~~~~~~~~~--------~-----~~~~~~~d~~l~~~l~~~~~~v~~a 288 (449)
.. ++|++|+++.+.+.. +.+.++||..+++...+..+. . .......|+|+++.++.+.+.+.++
T Consensus 751 ~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~ 830 (1205)
T PTZ00427 751 VAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTE 830 (1205)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54 799999999997655 457899998877765443211 0 0112345899999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHHH-HHHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 289 MSDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 289 ~~dd~~~~~al~~~l~~l~~-~~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
| ++|+++.|+.. |++|+. .+|.|++..++ |.... .......+.++..+|+.++.+|. |+|. .++++++.+.
T Consensus 831 m-e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~ 905 (1205)
T PTZ00427 831 M-KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLR 905 (1205)
T ss_pred H-HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhh
Confidence 9 99999999999 999998 78999997664 32111 12234566778888888999997 6776 7788888874
No 50
>PLN02381 valyl-tRNA synthetase
Probab=99.94 E-value=3e-26 Score=256.99 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=173.0
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHH--------------
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-------------- 210 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~-------------- 210 (449)
+|.|+.+.|.|++|||....+.+++++++. ||.++++ ||++.. +|+|||||+||||+|.++++
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~ 685 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 685 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhcc
Confidence 499999999999999999999999988874 8999965 599985 99999999999999999999
Q ss_pred -----------------------hcChhHHHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccC-
Q 013130 211 -----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP-FQEH- 264 (449)
Q Consensus 211 -----------------------~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~-~~~~- 264 (449)
+||+|++|||+++. ..++|++|+.+.+....+.+.+|||.++++...+.. +.+.
T Consensus 686 ~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~ 765 (1066)
T PLN02381 686 NLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPA 765 (1066)
T ss_pred ccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCccc
Confidence 79999999999985 788999999999998888999999999877655432 2111
Q ss_pred ----CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HHHHHHHHhhhcccCchhh---hhhhHHHHHH
Q 013130 265 ----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQQ---QLSLIESLRK 335 (449)
Q Consensus 265 ----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l--~~~~N~yi~~~~pw~~~~~---~~~~~~~l~~ 335 (449)
......|+|+++.++.+...+.++| ++|+|+.|++. |++| ...+|.|++..+||..... .........+
T Consensus 766 ~~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~ 843 (1066)
T PLN02381 766 TLSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDT 843 (1066)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHH
Confidence 1113468999999999999999999 89999999999 9999 5689999999999852221 1112233345
Q ss_pred HHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 336 IENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 336 ~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
+...|..++++|. |+|- .++++++.+.
T Consensus 844 L~~vL~~llrLL~PfmPf-itEELw~~L~ 871 (1066)
T PLN02381 844 LWICLDTGLRLLHPFMPF-VTEELWQRLP 871 (1066)
T ss_pred HHHHHHHHHHHHHhHhHH-HHHHHHHHhh
Confidence 5566777888887 6776 6777877774
No 51
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7e-26 Score=244.93 Aligned_cols=210 Identities=20% Similarity=0.242 Sum_probs=176.0
Q ss_pred cEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcC
Q 013130 150 DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 227 (449)
Q Consensus 150 Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~ 227 (449)
|+..-|.|..+.|.-.-...+.|+++. |++++ +.|||++. +|+|||||+||+|+|.+++++||+|+||+|+++++|.
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~v-ltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~ 635 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNV-LTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYW 635 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHH-hhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCch
Confidence 999999999999999999999999985 78888 45699985 8999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC------CCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 013130 228 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301 (449)
Q Consensus 228 ~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~ 301 (449)
.|+.||++.++.....+.+|+|+++++..++.++.+... ...+|+|++++++.+...+.++| ++|+++++++.
T Consensus 636 ~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~~ 714 (933)
T COG0060 636 EDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVRA 714 (933)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999999999999999999999999888875421 23568999999999999999999 99999999999
Q ss_pred HHHHHH-H-HHHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 302 AFQDAL-K-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 302 ~l~~l~-~-~~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++|+ . ..|.|++..+. |...+++.++.+.-.++...|..+..++. |+|- +++++.+.+.
T Consensus 715 -l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPf-taEeiw~~l~ 779 (933)
T COG0060 715 -LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPF-TAEEIWQNLP 779 (933)
T ss_pred -HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhCc
Confidence 99998 3 56788887765 65334444444444455566666777777 5555 6777776653
No 52
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.93 E-value=7e-24 Score=225.62 Aligned_cols=293 Identities=12% Similarity=0.046 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCcccc--ccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCcccccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPR--VSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 91 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~r--tt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~ 91 (449)
++.+++...+.|++++++|||.+ |.|.. .+.+...+.++++.|.++|++|+. |.+|++++.| |.
T Consensus 230 w~~~~~~~l~~~~~~~~~l~V~f-D~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~---~d--------- 295 (566)
T TIGR00456 230 WKRLVEYSLEGIKETLARLNIHF-DSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLF---GD--------- 295 (566)
T ss_pred HHHHHHHHHHHHHHHHHHcCCce-eeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccc---cC---------
Confidence 57888889999999999999999 65553 333455678999999999999987 9999876543 21
Q ss_pred cCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhc-CCCccEEeecccCcCchhHHHHHH-
Q 013130 92 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIAQ- 169 (449)
Q Consensus 92 ~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~-g~~~Dih~~GkDli~~H~~~~~a~- 169 (449)
++.|.+|-|+ +|.+++.++ ..++...++- |...-|.+.|.| ||.+...+
T Consensus 296 -------------~~~~~vl~ks--DGt~~Y~t~----------DiA~~~~k~~~~~d~iI~V~g~~----q~~h~~~v~ 346 (566)
T TIGR00456 296 -------------KDKDRVLQKS--DGTYLYLTR----------DIAYHLDKLERGFDKMIYVWGSD----HHLHIAQFF 346 (566)
T ss_pred -------------CCCCeEEEEC--CCCceechh----------hHHHHHHHHhcCCCEEEEEecCc----HHHHHHHHH
Confidence 0025666553 555544221 1122222221 445669999999 77776544
Q ss_pred --HhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHH-----------------------HHHHhcChhHHHHHHhhc
Q 013130 170 --SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR-----------------------QITERYHPLALRHFLISA 224 (449)
Q Consensus 170 --~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~-----------------------dll~~yg~D~lR~~ll~~ 224 (449)
+++++.+++.++ .||+|++++|.|||||+||+|+|. ++++.+|.|++|||+|+.
T Consensus 347 ~~l~~lG~~~~~~l-~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~ 425 (566)
T TIGR00456 347 AILEKLGFYKKKEL-IHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQ 425 (566)
T ss_pred HHHHHcCCCCCCce-EEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhc
Confidence 455554455566 899999999999999999999998 777789999999999998
Q ss_pred CcCCCcccCHHHHHHHH----HHHHHHHHHHHHHHHhcCC--cccC----CCCCCCChhHHHHHHHHHHHHHHHHHhccC
Q 013130 225 HYRSPLNYSVLQLDSAS----DAVFYIYQTLQDCEVALSP--FQEH----GKTARINPAAEDCINKLRDEFHARMSDDLN 294 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~----~~l~~l~~~~~~~~~~~~~--~~~~----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~ 294 (449)
...+|++|+++.+.+.. ..+++.+.|+..+...... .... ....+.+..+...+..+.+.+..+| ++++
T Consensus 426 ~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~ 504 (566)
T TIGR00456 426 NRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELE 504 (566)
T ss_pred CCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 88999999999876653 2467777776555332211 1000 0112224567788889999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCchhh--hhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 295 ~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~--~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
++.++.. ++++++.+|+|++.++....... ..++..++.++..+|...|.+|||.+.
T Consensus 505 p~~~~~~-l~~La~~~N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 505 PHVLTNY-LYELASLFSSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred cHHHHHH-HHHHHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999 99999999999998743221111 135778889999999999999999664
No 53
>PLN02959 aminoacyl-tRNA ligase
Probab=99.91 E-value=1.8e-23 Score=235.33 Aligned_cols=202 Identities=22% Similarity=0.167 Sum_probs=149.6
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 224 (449)
+|+|++++|+||+++|..+.+.++.|+++. ||++-+++||||+.+|+|||||+||||+|.+++++||+|++|||+++.
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 499999999999999999999999998874 887755788999999999999999999999999999999999999986
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS---PFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~ 301 (449)
++.+|++|+++.+..+...+.+++. .+...+. .+.........|+|+++.++.+..++.++| ++|+++.|++.
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~~~---~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKEIA---WMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHHHH---HHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 8899999999988765555444332 2222211 111111123468999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 302 ~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
.+++|......|..... .. ......+...|..++++|. |+|- ..+++++.+
T Consensus 826 ~~Yel~~~k~~yr~~~~-----~~----~~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l 877 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCG-----SG----GMNRDLVWRFMDVQTRLITPICPH-YAEHVWREI 877 (1084)
T ss_pred HHHHHHHhHHHHhhccc-----cc----hHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 23334333333322111 00 0112345567777888887 6666 667777766
No 54
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.1e-22 Score=210.99 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=179.6
Q ss_pred CCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCcc
Q 013130 126 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFF 203 (449)
Q Consensus 126 WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i 203 (449)
|-...-||..+...+. .|. |.++--.|.||+|||..-...+.+-++|+ ||.+|++| |+|.. .|+|||||+||||
T Consensus 527 ~PfS~lGWP~~t~d~~-~fy--P~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVI 602 (995)
T KOG0432|consen 527 WPFSTLGWPEETKDFK-NFY--PLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVI 602 (995)
T ss_pred ccchhcCCccccccHH-hcC--CchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccchhhcccc
Confidence 4455567877655554 333 78899999999999998888888888886 99999776 99985 8999999999999
Q ss_pred CHHHHHH------------------------------hc-------ChhHHHHHHhh-cCcCCCcccCHHHHHHHHHHHH
Q 013130 204 TIRQITE------------------------------RY-------HPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVF 245 (449)
Q Consensus 204 ~~~dll~------------------------------~y-------g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~ 245 (449)
+|.|+|+ .| |.|+|||-|++ ..-..|++++...+.......+
T Consensus 603 DPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcN 682 (995)
T KOG0432|consen 603 DPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCN 682 (995)
T ss_pred CHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHH
Confidence 9999998 35 99999999988 5889999999999999888999
Q ss_pred HHHHHHHHHHHhcCC-cccCC------CCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--HHHHHHHhh
Q 013130 246 YIYQTLQDCEVALSP-FQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNM 316 (449)
Q Consensus 246 ~l~~~~~~~~~~~~~-~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~--~~~N~yi~~ 316 (449)
+|||..+++..++.. +.+.. .....|.|+++.+....+.+.++| +.+++..|... +..|. ..+.-|++.
T Consensus 683 KlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~lCDVYlE~ 760 (995)
T KOG0432|consen 683 KLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDLCDVYLEA 760 (995)
T ss_pred HHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999988766543 22211 111268999999999999999999 99999999999 98885 478899999
Q ss_pred hcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 317 LKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 317 ~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
.+|-.-..........-.++...+...|++|. |||- -+++.++.+
T Consensus 761 ~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPF-vtEel~qrl 806 (995)
T KOG0432|consen 761 TKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPF-ITEELWQRL 806 (995)
T ss_pred hhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc-cHHHHHHhc
Confidence 99832111111122334455567777888887 6776 566676665
No 55
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.1e-21 Score=208.68 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=152.4
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccC-------CCCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALR 218 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~-------~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR 218 (449)
.|+|+++||+||+..|..|.+..+.|++. +||.++ +.+|||+. +|+|||||+||+|+|++++++||+|++|
T Consensus 525 ~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~R 603 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVR 603 (814)
T ss_pred cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecCCCccccccCCCCCHHHHHHHhCchHHH
Confidence 39999999999999999999999999873 477777 78999999 8999999999999999999999999999
Q ss_pred HHHhh-cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCC-hhHHHHHHHHHHHHHHHHHhc-cCH
Q 013130 219 HFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARIN-PAAEDCINKLRDEFHARMSDD-LNT 295 (449)
Q Consensus 219 ~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~a~~dd-~~~ 295 (449)
+|+|+ +++.+|++|+++.+..+.+.|.++|+.+.......... ....+ ..+...++++...+.+.+ +. +.+
T Consensus 604 l~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~~~v~~~~-e~~~~~ 677 (814)
T COG0495 604 LYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKEQGKEDRWLLHRTIKKVTEDF-EARQTF 677 (814)
T ss_pred HHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccchhhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99998 59999999999999999999999998876543221010 01111 334455677888888888 55 888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 296 SHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 296 ~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
+.|++. +|+|++.+.+|...... ... .+...+..+..+|. |.|- ..++....++
T Consensus 678 nt~i~~-~m~l~N~l~~~~~~~~~---------~~~---~l~~~l~~~v~lLaP~aPH-~aEElW~~lg 732 (814)
T COG0495 678 NTAIAA-LMELLNALRKYLRRTEG---------DRK---VLREALETWVRLLAPFAPH-IAEELWEELG 732 (814)
T ss_pred HHHHHH-HHHHHHHHHHHHhcccc---------hHH---HHHHHHHHHHHHhcccccH-HHHHHHHHhc
Confidence 999999 99999999998876542 112 23355666667776 5554 4555555443
No 56
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=3.4e-20 Score=196.82 Aligned_cols=293 Identities=14% Similarity=0.068 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCcccccccC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRA 93 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~~ 93 (449)
++.+++...+.|++++++|||.+ |.|..-+.|.+.+.++++.|.++|++|+.+|.+|++.+.| |.
T Consensus 229 w~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~---g~----------- 293 (562)
T PRK12451 229 WNWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEE---GM----------- 293 (562)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEeccc---CC-----------
Confidence 57788899999999999999999 7777667777778999999999999999999999875443 20
Q ss_pred CCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhh--cCCCccEEeecccCcCchhHHHHHHHh
Q 013130 94 GERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQSC 171 (449)
Q Consensus 94 g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~--~g~~~Dih~~GkDli~~H~~~~~a~~~ 171 (449)
.|.+|-|+ +|.+++.++ ..++...++ +|...-|.+.|.| ||.+...+..
T Consensus 294 -------------~~~vl~ks--DGt~~Y~t~----------DiA~~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~ 344 (562)
T PRK12451 294 -------------PPCLIRKS--DGATIYATR----------DLTAALYRQNTFGFDKALYVVGPE----QSLHFNQFFT 344 (562)
T ss_pred -------------CceEEEeC--CCccccchh----------HHHHHHHHhhccCCCEEEEEeCCc----HHHHHHHHHH
Confidence 14555443 454444221 122223333 4555679999999 8887765543
Q ss_pred h---ccCCCCCcE-EEeeeeeeeCCccccccCCCccCHHHHHHh-------------------------cChhHHHHHHh
Q 013130 172 A---ACQDSNVSY-WMHNGHVTNNNEKMSKSLGNFFTIRQITER-------------------------YHPLALRHFLI 222 (449)
Q Consensus 172 a---~~~~~~~~~-~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-------------------------yg~D~lR~~ll 222 (449)
+ ++..+..++ .+..|+|+.+|+||||..||+|+++||++. .|.+++||++|
T Consensus 345 ~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l 424 (562)
T PRK12451 345 VLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDL 424 (562)
T ss_pred HHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHh
Confidence 3 332222222 234466777999999999999999999996 67999999999
Q ss_pred hcCcCCCcccCHHHHHHHH---HH-HHHHHHHHHHHHHhcC-Ccc--cCCCCCCCChhHHHHHHHHHHHHHHHHHhccCH
Q 013130 223 SAHYRSPLNYSVLQLDSAS---DA-VFYIYQTLQDCEVALS-PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNT 295 (449)
Q Consensus 223 ~~~~~~d~~fs~~~l~~~~---~~-l~~l~~~~~~~~~~~~-~~~--~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~ 295 (449)
+.+..++++|+++.+.... +. +..-+.|+..+..... ... ......+.+..++..+..+.+.+..+| +++++
T Consensus 425 ~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep 503 (562)
T PRK12451 425 KNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEP 503 (562)
T ss_pred hcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCH
Confidence 9999999999999976543 22 1222223322222111 000 000112233567888899999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 296 SHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 296 ~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
+.++.. ++++++.+|+|++.++.-........+..++.++..+|...|.+|||.+.
T Consensus 504 ~~~~~y-l~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~~ 559 (562)
T PRK12451 504 SVISKY-VLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEAP 559 (562)
T ss_pred HHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999 99999999999987664211111235778889999999999999999664
No 57
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.84 E-value=1.5e-19 Score=161.37 Aligned_cols=155 Identities=28% Similarity=0.375 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Q 013130 235 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 314 (449)
Q Consensus 235 ~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi 314 (449)
+.|.++.+.+.++++++..+. .+. .. ...+..+...|.++|+||||||.|+.. |+++++.+|.++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 567888899999988876652 110 00 112345668999999999999999999 999999999988
Q ss_pred hhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChh
Q 013130 315 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 394 (449)
Q Consensus 315 ~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~ 394 (449)
+.. + ..+..+...+..++.+|||... .....+.. .....+...+.|..|+++|++||++|||+
T Consensus 67 ~~~-~-----------~~~~~~~~~l~~~~~vLGl~~~-~~~~~~~~----~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~ 129 (156)
T cd07963 67 KED-I-----------EKAAALAALLKALGGVLGLLQQ-DPEAFLQG----GTGEGGLSVAEIEALIAQRNQARKAKDWA 129 (156)
T ss_pred ccc-h-----------HHHHHHHHHHHHHHhccCCCCC-CHHHHHhc----cccccccCHHHHHHHHHHHHHHHHhcCHH
Confidence 542 1 0133344567778889998432 11110100 00011122346999999999999999999
Q ss_pred HhHHHHHHcHhCCCEEEecCCCeEEEe
Q 013130 395 KSDQIRADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 395 ~AD~IRd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
+||+||++|.++||.|+|+|+||+|++
T Consensus 130 ~AD~IRd~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 130 EADRIRDELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHHHHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999999999974
No 58
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.2e-20 Score=188.69 Aligned_cols=210 Identities=18% Similarity=0.223 Sum_probs=165.4
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHh------cChhHHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER------YHPLALRH 219 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~------yg~D~lR~ 219 (449)
.+|+...|.|..+.|.....-++.|..++ |+..+++| ||... +|.|||||+||||+|..++++ ||+|++||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivH-GFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVH-GFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheeee-eeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 57999999999999999999999998775 88888654 88874 899999999999999999998 99999999
Q ss_pred HHhhcCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhcc
Q 013130 220 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDL 293 (449)
Q Consensus 220 ~ll~~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~ 293 (449)
|++++.+..++...+..|.++...+.+++++++++.+.+.++... ....-+|+.++..+.++.+++.+.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 999889999999999999999999999999999999888776543 1123468999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHH--HHHHHHhhhcccCchh---hhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 294 NTSHILTGAFQDALK--FINSSLNMLKKKQPKQ---QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 294 ~~~~al~~~l~~l~~--~~N~yi~~~~pw~~~~---~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
+|.+++.. |..|+. ..|.|++..+-.+ .- ++.++...=.++...+..++.++. |.|- ..+++++-+
T Consensus 724 ~f~kVv~~-lq~F~~~~lSa~YfdivKDRL-Y~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~-LaeEvwq~l 795 (937)
T KOG0433|consen 724 KFRKVVND-LQQFLQRNLSAFYFDIVKDRL-YCDKVGSESRRSAQTTLHHLLHNLAHIISPILPH-LAEEVWQHL 795 (937)
T ss_pred cHHHHHHH-HHHHHHHHhhHHHHHHHhhhh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHhC
Confidence 99999999 988865 4577887765322 11 122222222222333444555555 5554 556666544
No 59
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.6e-18 Score=178.78 Aligned_cols=297 Identities=13% Similarity=0.072 Sum_probs=209.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccc-cccccH-HHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCcccccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQP-RVSDHM-EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 91 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~-rtt~h~-~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~ 91 (449)
++.+++.....|++++.+|||.+ |.|- ..+-+. ..|.++++.|.++|++|+.+|..+.+..+|..+|.
T Consensus 234 w~~~v~~~l~~~k~~l~~l~V~f-D~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd--------- 303 (577)
T COG0018 234 WRKFVDLSLEGIKETLDRLGVKF-DVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGD--------- 303 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhCccc-ceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCC---------
Confidence 35689999999999999999999 5554 333333 46889999999999999999999988877643332
Q ss_pred cCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhh-cCCCccEEeecccCcCchhHHHHHHH
Q 013130 92 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQS 170 (449)
Q Consensus 92 ~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~-~g~~~Dih~~GkDli~~H~~~~~a~~ 170 (449)
+.|.+|-|+ +|-..+-++ .-+....++ .|...-|.+.|.| ||.+..-+-
T Consensus 304 --------------~~~~vl~KS--DGt~lY~t~----------DIAy~~~K~~~~~d~~IyV~gad----q~~~~~ql~ 353 (577)
T COG0018 304 --------------DKDRVLQKS--DGTYLYFTR----------DIAYHLYKFERGFDKLIYVLGAD----QHGHFKQLK 353 (577)
T ss_pred --------------CCCeEEEEc--CCCeeeehh----------HHHHHHHHHhcCCCEEEEEeCCc----chhHHHHHH
Confidence 125566543 443322110 112223344 5666779999999 888755433
Q ss_pred h---hccCCCCCcEEEeeeeeee---CCccccccCCCccCHHHHHHhcC----------------------hhHHHHHHh
Q 013130 171 C---AACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIRQITERYH----------------------PLALRHFLI 222 (449)
Q Consensus 171 ~---a~~~~~~~~~~~h~g~l~~---~G~KMSKSlGN~i~~~dll~~yg----------------------~D~lR~~ll 222 (449)
. .++..+...+.+|.++-++ +|.||||..||+|+++|+++.-+ .+++||+++
T Consensus 354 ~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l 433 (577)
T COG0018 354 AVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADL 433 (577)
T ss_pred HHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHH
Confidence 3 2233333356678777766 57899999999999999999888 999999999
Q ss_pred hcCcCCCcccCHHHHHHHHH-H---HHHHHHHHHHHHHhcCC--cccC-----CCCCCCChhHHHHHHHHHHHHHHHHHh
Q 013130 223 SAHYRSPLNYSVLQLDSASD-A---VFYIYQTLQDCEVALSP--FQEH-----GKTARINPAAEDCINKLRDEFHARMSD 291 (449)
Q Consensus 223 ~~~~~~d~~fs~~~l~~~~~-~---l~~l~~~~~~~~~~~~~--~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a~~d 291 (449)
+.+..+++.|+|+.+.+-.. + +.--+.|+..+...... .... ......+..|...+..+..-+..+. +
T Consensus 434 ~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~ 512 (577)
T COG0018 434 SRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-E 512 (577)
T ss_pred hcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-H
Confidence 99999999999999987643 2 12222233222221111 1000 0111224678888899999999999 9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh--hhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 292 DLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 292 d~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~--~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
++.++..... +++|+...|+|++.++.-..... ..+++.++.++..+|...|.+|||.+.
T Consensus 513 ~~~Ph~la~Y-L~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 513 ELEPHRLANY-LYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred hcCchHHHHH-HHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999 99999999999999865321111 235778889999999999999999654
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.80 E-value=1e-18 Score=173.80 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=138.0
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc-c-H-HHHHHHHHHHHHcCCeEee----c----CcE
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-H-M-EQIKDMITQIINNDCAYVV----E----GDV 70 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-h-~-~~v~~~i~~L~~~G~aY~~----~----g~~ 70 (449)
+|...|...|.++ ++|++|.+.|++.|+.|||++ + |.++|+ + . ...+.+...|.+++.|... . .+-
T Consensus 88 pi~~ip~p~g~~~-~~~d~~~~~f~~~l~~lgi~~-d-~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~ 164 (353)
T cd00674 88 PLSSVPDPFGCCE-SYAEHFERPFEESLEKLGIEV-E-FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQET 164 (353)
T ss_pred cchhchhhcCCCH-HHHHHHHHHHHHHHHHcCCee-e-eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCC
Confidence 5666777788877 999999999999999999997 7 555554 2 2 4567778888888888753 1 133
Q ss_pred EEeCCCC-CccccccCcccccccC-CCCCcccccccCccchhccccccCCCCcccCC-CCCCCCCchhhhHHHHHhhcCC
Q 013130 71 FFAVEKS-PNYGRLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSP-WGPGRPGWHIECSAMSAHYLSS 147 (449)
Q Consensus 71 yf~~~~~-~~yg~ls~~~l~~~~~-g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~-WG~grPgWh~e~~~~~~~~~g~ 147 (449)
||...-+ +.+|.+. ..+.+... ...|. +.- ..|.-.+-+. =|.|--.|-++. +|-+.++
T Consensus 165 ~~P~~p~c~~cg~~~-~~v~~~d~~~~~v~-------------y~c-~cG~~g~~~~~~g~~KL~Wr~dW-~~rW~~l-- 226 (353)
T cd00674 165 WYPFMPYCEKCGKDT-TTVEAYDAKAGTVT-------------YKC-ECGHEETVDIRTGRGKLTWRVDW-PMRWAIL-- 226 (353)
T ss_pred ceeeeeecCCcCcce-eEEEEEeCCCCeEE-------------EEc-CCCCEEEEeecCCCcccCCCCCc-hhhhhhc--
Confidence 3332211 3566543 11111100 00111 100 0111111000 012222222222 3444556
Q ss_pred CccEEeecccCcCc--hhHHHHHHHh-hccCCCCCcEEEeeeeeeeCCc-cccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 148 KFDIHGGGIDLIFP--HHENEIAQSC-AACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 148 ~~Dih~~GkDli~~--H~~~~~a~~~-a~~~~~~~~~~~h~g~l~~~G~-KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
.+|+-+.|+|+.-+ ...-..+.+. +++..+|.. +.+||++++|. |||||+||+|+|.|+++.+|+|++|||+++
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~--~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~ 304 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeE--EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHh
Confidence 57999999995543 0112233344 565555543 45699998776 999999999999999999999999999999
Q ss_pred cC-cCCCcccCHHHHHHHHHHHHHHHHH
Q 013130 224 AH-YRSPLNYSVLQLDSASDAVFYIYQT 250 (449)
Q Consensus 224 ~~-~~~d~~fs~~~l~~~~~~l~~l~~~ 250 (449)
.+ ..++++|+.+ +....+.+.++.+.
T Consensus 305 ~~~~~~~i~Fd~~-~~~~~dey~r~~~~ 331 (353)
T cd00674 305 RKNPEKHIGFDLD-ILRLYDEYDRLERK 331 (353)
T ss_pred CCCCCCCCCcChh-HHHHHHHHHHHHHH
Confidence 76 8899999985 44455555554443
No 61
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.78 E-value=1.1e-18 Score=182.88 Aligned_cols=215 Identities=16% Similarity=0.173 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHH-HHHHHHHHHHHcCCeEee--------cCcEEEeCCCC-Cccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HME-QIKDMITQIINNDCAYVV--------EGDVFFAVEKS-PNYG 81 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~-~v~~~i~~L~~~G~aY~~--------~g~~yf~~~~~-~~yg 81 (449)
++++|++|.+.|.+.|+.|||.+ ++| ++|+ |.. .-..+...|.+++.|..- -.+-|+...-+ +.||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~-d~~-~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg 182 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEY-EFI-SATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCG 182 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCce-EEE-ehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCC
Confidence 89999999999999999999997 744 5554 332 234445555666666542 12233332211 4567
Q ss_pred cccCcccccccC-CCCCcccccccCccchhccccccCCCCcccCCC-CCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 82 RLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 82 ~ls~~~l~~~~~-g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~W-G~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
++......+... ..+|. +.- ..|.-.+-+.. |.|--.|-++. +|-+.++ .+|+-.+|+|+.
T Consensus 183 ~~~~~~~~~~d~~~~~v~-------------y~~-~cG~~~~~~~~~g~~KL~Wr~dW-~~rW~~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 183 KVLTTPVISYDAEAGTVT-------------YDC-ECGHEGEVPVTGGHGKLQWKVDW-PMRWAAL--GVDFEPFGKDHA 245 (510)
T ss_pred ccceEEEEEEeCCCCEEE-------------EEc-CCCCEEEEecCCCCcccCCCCCc-HHHHHHc--CCCEEeeCcccC
Confidence 654322111000 00111 100 01211111100 22222233333 4555667 579999999988
Q ss_pred CchhHHHHHHHh-hccCCCCCcEEEeeeeeeeC-CccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHH
Q 013130 160 FPHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQ 236 (449)
Q Consensus 160 ~~H~~~~~a~~~-a~~~~~~~~~~~h~g~l~~~-G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~ 236 (449)
.+++.....++. +++.++|.. +|+||++.+ |+|||||+||+|+|.|+++.|++|++|||++. .++.++++|+.
T Consensus 246 ~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~-- 321 (510)
T PRK00750 246 SASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV-- 321 (510)
T ss_pred cchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--
Confidence 854444455555 666655543 678999997 99999999999999999999999999988875 59999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013130 237 LDSASDAVFYIYQTL 251 (449)
Q Consensus 237 l~~~~~~l~~l~~~~ 251 (449)
+..+.+.+.++.+.+
T Consensus 322 l~~~~dey~rl~~~~ 336 (510)
T PRK00750 322 IPKLVDEYDRFERKY 336 (510)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766554
No 62
>PLN02286 arginine-tRNA ligase
Probab=99.78 E-value=6.4e-17 Score=172.06 Aligned_cols=290 Identities=10% Similarity=0.033 Sum_probs=199.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCcccccccC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRA 93 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~~ 93 (449)
++.+++.....|.+.++.|||.+ |.. .-+.|.+.+.++++.|.++|++|+.+|.+|++.+.+ +
T Consensus 234 w~~~~~~~~~~~~~~y~~l~V~f-d~~-ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~---~------------ 296 (576)
T PLN02286 234 WAKICEISRREFEKVYQRLRVEL-EEK-GESFYNPYIPGVIEELESKGLVVESDGARVIFVEGF---D------------ 296 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhCCee-eec-CchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCC---C------------
Confidence 56788888999999999999998 653 344566778999999999999999999998854221 0
Q ss_pred CCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhh--cCCCccEEeecccCcCchhHHHHHH--
Q 013130 94 GERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQ-- 169 (449)
Q Consensus 94 g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~--~g~~~Dih~~GkDli~~H~~~~~a~-- 169 (449)
.+.+|-|+ +|..++.++ ..++...++ ++...-|.+.|.| |+.+...+
T Consensus 297 -------------~~~vl~ks--DGt~tY~t~----------DIA~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~ 347 (576)
T PLN02286 297 -------------IPLIVVKS--DGGFNYAST----------DLAALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFK 347 (576)
T ss_pred -------------CceEEEEC--CCchhhHHH----------HHHHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHH
Confidence 13444332 444333110 122222333 3445669999999 77776433
Q ss_pred -HhhccCCCC---CcE-EEeeeeee-eCCccccccCCCccCHHHHHHh-----------------------------cCh
Q 013130 170 -SCAACQDSN---VSY-WMHNGHVT-NNNEKMSKSLGNFFTIRQITER-----------------------------YHP 214 (449)
Q Consensus 170 -~~a~~~~~~---~~~-~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-----------------------------yg~ 214 (449)
+.+++..+. .++ .+..|+|+ .+|+||||..||+|+++|+++. .|.
T Consensus 348 ~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~ 427 (576)
T PLN02286 348 AAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGY 427 (576)
T ss_pred HHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhh
Confidence 344442211 122 24457886 5888999999999999999983 468
Q ss_pred hHHHHHHhhcCcCCCcccCHHHHHHHHH---H-HHHHHHHHHHHHHhcCC----cc---cCCCCCCCChhHHHHHHHHHH
Q 013130 215 LALRHFLISAHYRSPLNYSVLQLDSASD---A-VFYIYQTLQDCEVALSP----FQ---EHGKTARINPAAEDCINKLRD 283 (449)
Q Consensus 215 D~lR~~ll~~~~~~d~~fs~~~l~~~~~---~-l~~l~~~~~~~~~~~~~----~~---~~~~~~~~d~~l~~~l~~~~~ 283 (449)
+++||++|+.+..++++|+++.+..... . +..-+.|+..+...... .. ......+.+..|+..+..+.+
T Consensus 428 ~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~ 507 (576)
T PLN02286 428 GAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPE 507 (576)
T ss_pred hhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999765531 1 22222233222222111 00 000112233567888889999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 284 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 284 ~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
.+..+. +++.++..+.. +++++...|+|++.++.-. ..+..++..++.++..+|...|.+|||.+.
T Consensus 508 vv~~a~-~~~~P~~l~~Y-l~~LA~~F~~fY~~~~Vl~-~~~~~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 508 VVEEAC-TDLLPNRLCEY-LYNLSEKFTKFYSNCKVNG-SEEETSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHH-HhcCchHHHHH-HHHHHHHHHHHHhcCccCC-CCchhHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999 99999999999 9999999999998764322 111245788889999999999999999664
No 63
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.9e-16 Score=159.37 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=128.8
Q ss_pred CccEEeecccCcCchhHHHHHHHhhcc-------CCCCCcEEEeeeeee----e---CC---------------------
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAAC-------QDSNVSYWMHNGHVT----N---NN--------------------- 192 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~-------~~~~~~~~~h~g~l~----~---~G--------------------- 192 (449)
|+||++||+.+.--|..|-...+.-+. .+||.++ +..|+|. . .|
T Consensus 527 PVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~L-i~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk 605 (876)
T KOG0435|consen 527 PVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKL-ITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLK 605 (876)
T ss_pred ceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHH-HhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEec
Confidence 899999999999999888877765442 2577766 4556652 0 11
Q ss_pred ----------ccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHh--cC
Q 013130 193 ----------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA--LS 259 (449)
Q Consensus 193 ----------~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~--~~ 259 (449)
+|||||++|+|+|.+++.+||+|++|+|+|- ++++++++|+...|....+.+.++|+.+..+... ..
T Consensus 606 ~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g 685 (876)
T KOG0435|consen 606 NDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDG 685 (876)
T ss_pred CCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999998 5999999999999999999999999988776543 11
Q ss_pred CcccCCCC----CCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Q 013130 260 PFQEHGKT----ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 315 (449)
Q Consensus 260 ~~~~~~~~----~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~ 315 (449)
........ ...+..+.+..+.++..+.+++...+.++.|++. +|.|...+.+-..
T Consensus 686 ~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~k 744 (876)
T KOG0435|consen 686 KAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD-MMGLTNALKKALK 744 (876)
T ss_pred CcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 11111111 1223467888899999999999888999999999 9988876554433
No 64
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.70 E-value=1.8e-17 Score=177.90 Aligned_cols=86 Identities=30% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhh-
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS- 223 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~- 223 (449)
.|+|+.++|+|++++|..+.+..+.++.+. ||+++ ++|||++. +|+|||||+||||+|.+++++||+|++|+|+++
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v-~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~ 591 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKV-ITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASS 591 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEE-EEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchhee-eecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhc
Confidence 489999999999999999999999999874 88887 55699985 899999999999999999999999999999995
Q ss_pred cCcCCCcccC
Q 013130 224 AHYRSPLNYS 233 (449)
Q Consensus 224 ~~~~~d~~fs 233 (449)
+.+.+|++||
T Consensus 592 ~~~~~D~~~s 601 (601)
T PF00133_consen 592 ADPGQDINFS 601 (601)
T ss_dssp S-TTS-EEE-
T ss_pred CCcccCcccC
Confidence 7999999997
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.69 E-value=3.3e-16 Score=163.22 Aligned_cols=218 Identities=14% Similarity=0.191 Sum_probs=129.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc-cH---------------HHHHHHHHHHHHcCCeEeecC
Q 013130 5 RRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HM---------------EQIKDMITQIINNDCAYVVEG 68 (449)
Q Consensus 5 ~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-h~---------------~~v~~~i~~L~~~G~aY~~~g 68 (449)
..+.-.|.+ ..+++.|...|.+.|+.|||.+ + |.++|+ |. +.|.+++..-... + -.
T Consensus 90 ~vpdp~g~~-~s~~~h~~~~~~~~l~~~gi~~-e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~----~-~~ 161 (515)
T TIGR00467 90 RIPDPEGCK-TSYAEHFLIPFLESLPVLGINP-E-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS----K-LE 161 (515)
T ss_pred ecCCCCCCc-HHHHHHHHHHHHHHHHHcCCeE-E-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC----c-cC
Confidence 344456776 9999999999999999999986 5 667775 22 2223333322211 0 11
Q ss_pred cEEEeCCCC-CccccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCC-CCCCCCchhhhHHHHHhhcC
Q 013130 69 DVFFAVEKS-PNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLS 146 (449)
Q Consensus 69 ~~yf~~~~~-~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~W-G~grPgWh~e~~~~~~~~~g 146 (449)
+-||...-+ +.||++.. ...+...+.+|. |.- ..|.-.+-+.. |.|--.|-++. +|-+.++
T Consensus 162 ~~~~P~~pic~~cGrv~~-~~~~~~~~~~v~-------------Y~c-~cG~~g~~~~~~g~~KL~WkvdW-~~RW~~l- 224 (515)
T TIGR00467 162 ENWYPISVFCENCGRDTT-TVNNYDNEYSIE-------------YSC-ECGNQESVDIYTGAIKLPWRVDW-PARWKIE- 224 (515)
T ss_pred CCceeeeeecCCcCccCc-eEEEecCCceEE-------------EEc-CCCCEEEEeecCCCcccCCCCCc-HhhHhhh-
Confidence 233332211 45676532 111111011111 110 01211111100 22222233332 3444556
Q ss_pred CCccEEeecccCcCch----hHHHHHHHhhccCCCCCcEEEeeeeeee--CCccccccCCCccCHHHHHHhcChhHHHHH
Q 013130 147 SKFDIHGGGIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVTN--NNEKMSKSLGNFFTIRQITERYHPLALRHF 220 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H----~~~~~a~~~a~~~~~~~~~~~h~g~l~~--~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ 220 (449)
.+|+-..|+|+.-+= ....+|+ .++++.||..+ . .+|+.+ +|+|||||+||+|++.|+++.+++|++|||
T Consensus 225 -gV~~Ep~GkDH~~~ggsy~~~~~ia~-~~l~~~~P~~~-~-ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~ 300 (515)
T TIGR00467 225 -KVTFEPAGKDHAAAGGSYDTGVNIAK-EIFQYSPPVTV-Q-YEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFL 300 (515)
T ss_pred -CcccccCCCCccCccCCchhHHHHHH-HHhCCCCCcCc-E-EEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHH
Confidence 478888999944321 2233444 56666655443 2 356544 678999999999999999999999999999
Q ss_pred HhhcCcCCCcccCHHHHHHHHHHHHHHHHHHH
Q 013130 221 LISAHYRSPLNYSVLQLDSASDAVFYIYQTLQ 252 (449)
Q Consensus 221 ll~~~~~~d~~fs~~~l~~~~~~l~~l~~~~~ 252 (449)
+++.+++++++|+.+.+ ++.+.+.++...+.
T Consensus 301 ~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~~ 331 (515)
T TIGR00467 301 FARTKPEFHISFDLDVI-KLYEDYDKFERFYY 331 (515)
T ss_pred HhccCCCCCCcCCHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999988 88887777666553
No 66
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.1e-16 Score=159.92 Aligned_cols=213 Identities=15% Similarity=0.148 Sum_probs=164.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
.|.|.-..|.|..+.|..--...+.+++++ ||+|+ +++|.|+. +|+|||||+.|.-+|..++++||+|++|+||..+
T Consensus 553 fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInS 631 (1070)
T KOG0434|consen 553 FPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINS 631 (1070)
T ss_pred CchHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecC
Confidence 389999999999999998888888899885 68888 77899985 9999999999999999999999999999999987
Q ss_pred Cc--CCCcccCHHHHHHHHHH-HHHHHHHHHHHHHhcCCccc--------C---CCCCCCChhHHHHHHHHHHHHHHHHH
Q 013130 225 HY--RSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALSPFQE--------H---GKTARINPAAEDCINKLRDEFHARMS 290 (449)
Q Consensus 225 ~~--~~d~~fs~~~l~~~~~~-l~~l~~~~~~~~~~~~~~~~--------~---~~~~~~d~~l~~~l~~~~~~v~~a~~ 290 (449)
|. ...+.|.++.+.+.... +--+||.++++......... . ......|+|++...+.+..-+++-|
T Consensus 632 PVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM- 710 (1070)
T KOG0434|consen 632 PVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM- 710 (1070)
T ss_pred ccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-
Confidence 53 78899999999998764 34667777666443211110 0 1112357999999999999999999
Q ss_pred hccCHHHHHHHHHHHHHHH-HHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHhcC-CCCCChhHHHHHHH
Q 013130 291 DDLNTSHILTGAFQDALKF-INSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQLK 363 (449)
Q Consensus 291 dd~~~~~al~~~l~~l~~~-~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilgi-~~~~~~~~~~~~~~ 363 (449)
+.|.+..++.. +..|+.. .|.|+.-..-...+.+. ..+...|.++.++|..+.+++|. .|- -++.+.+.|+
T Consensus 711 ~~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF-~tE~iyq~Lk 784 (1070)
T KOG0434|consen 711 DQYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPF-FTEYIYQNLK 784 (1070)
T ss_pred HheehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHH
Confidence 99999999999 9999885 58898766533212222 34677888888999999999984 443 3444445554
No 67
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.67 E-value=2.2e-16 Score=164.90 Aligned_cols=208 Identities=22% Similarity=0.217 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----CCccccccC-cc----
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRLSG-QR---- 87 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~~~yg~ls~-~~---- 87 (449)
....|.+.+.++++.||+.+ |...++|+|++...+++++|+++|+||. +||... ...+|..+. ++
T Consensus 150 ~~~e~~~~I~edL~wLGl~w-D~~~~qSdr~~~y~~~a~~Li~~G~AY~-----C~cs~ee~~~~r~~g~~~~~R~~~~e 223 (567)
T PRK04156 150 PDPEAYDMILEDLKWLGVKW-DEVVIQSDRLEIYYEYARKLIEMGGAYV-----CTCDPEEFKELRDAGKPCPHRDKSPE 223 (567)
T ss_pred chHHHHHHHHHHHHHcCCCC-CCccCcccCHHHHHHHHHHHHHcCCCcc-----CCCCHHHHHHHHhcCCCCCCcCCCHH
Confidence 34566689999999999986 8889999999999999999999999995 343321 122333221 11
Q ss_pred --c---ccccCCC--------CCcccccccCc--cchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEE
Q 013130 88 --L---ENNRAGE--------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 152 (449)
Q Consensus 88 --l---~~~~~g~--------~~~~~~~k~~~--~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih 152 (449)
+ +++..|. |+..+....|+ +||++|+......| -||.+.++|++ ..|..++|-|
T Consensus 224 e~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~Pt-------Y~fA~~VDD~ 292 (567)
T PRK04156 224 ENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPT-------YNFAVAVDDH 292 (567)
T ss_pred HHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEE-------eccCceeeec
Confidence 1 2233343 33333334455 79999986443334 37888888865 1466689999
Q ss_pred eecccCcC---chhHHHHHHHhhcc--CCCCCcEEEeeeeeeeCCccccccC-------C--------CccCHHHHHHh-
Q 013130 153 GGGIDLIF---PHHENEIAQSCAAC--QDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITER- 211 (449)
Q Consensus 153 ~~GkDli~---~H~~~~~a~~~a~~--~~~~~~~~~h~g~l~~~G~KMSKSl-------G--------N~i~~~dll~~- 211 (449)
.+|++++. .|+.+.+.|...+. +.+++. |+|.+.|+.+|.|||||. | +..|+..+...
T Consensus 293 l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~-~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG 371 (567)
T PRK04156 293 LLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPE-TIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG 371 (567)
T ss_pred CCCCCeEEcccccccChHHHHHHHHHcCCCCce-EEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcC
Confidence 99999999 99999999885543 444454 489999999999999998 5 44677787765
Q ss_pred cChhHHHHHHhhcCcC-CCcccCHHHHHHHHH
Q 013130 212 YHPLALRHFLISAHYR-SPLNYSVLQLDSASD 242 (449)
Q Consensus 212 yg~D~lR~~ll~~~~~-~d~~fs~~~l~~~~~ 242 (449)
|.|+++|.|++...++ ++..|+++.|....+
T Consensus 372 ~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 372 ILPEAIRELIIEVGVKETDATISWENLYAINR 403 (567)
T ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 9999999999987665 999999999987653
No 68
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.6e-16 Score=160.07 Aligned_cols=158 Identities=23% Similarity=0.200 Sum_probs=124.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccC-CCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 224 (449)
+|+|+.++|||||..|..+.+..+.|+.. +.|++-+-.+|||++|++|||||.|||.|+.+.+++||+|+.|+-|+.+
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 69999999999999999999999999986 4677777899999999999999999999999999999999999999874
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ---EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~ 301 (449)
.-..|.||.......+ +-+|++-+..+..++..-. .+....-.|+-+.+.++.++..-.+++ ++.++..|+..
T Consensus 742 D~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CCcccchhHHhcccHH---HHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 8889999988765543 4455555555554433211 011111245667788888899999999 89999999987
Q ss_pred HHHHHHH
Q 013130 302 AFQDALK 308 (449)
Q Consensus 302 ~l~~l~~ 308 (449)
=++++-.
T Consensus 818 Gfyd~qa 824 (1080)
T KOG0437|consen 818 GFYDLQA 824 (1080)
T ss_pred hhHHHHH
Confidence 4555543
No 69
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.62 E-value=6.9e-15 Score=137.91 Aligned_cols=153 Identities=17% Similarity=0.096 Sum_probs=111.3
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccc
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYG 81 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg 81 (449)
||+..|.+.+ .|+++|+.+.+.|.++++.|||.+ |.|+|+|++++.|+++++.|.++|++|+.+|.+||++++|..
T Consensus 52 qi~~~a~~~~-~~~~~~~~~~~~~~~~~~~L~i~~-d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~-- 127 (212)
T cd00671 52 QIGLLILSLE-KWRKLVEESIKADLETYGRLDVRF-DVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD-- 127 (212)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCcC-ceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC--
Confidence 7888886664 499999999999999999999996 999999999999999999999999999999999999877511
Q ss_pred cccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchh-hhHHHHHhh-cCCCccEEeecccCc
Q 013130 82 RLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI-ECSAMSAHY-LSSKFDIHGGGIDLI 159 (449)
Q Consensus 82 ~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~-e~~~~~~~~-~g~~~Dih~~GkDli 159 (449)
. .|++|.|+ +|.+++ +. .+++...++ .+...-|++.|.|
T Consensus 128 -----------------------~-~d~vl~rs--dG~~~Y-----------~~~DlA~~~~~~~~~~~~~i~v~g~~-- 168 (212)
T cd00671 128 -----------------------D-KDRVLVRS--DGTYTY-----------FTRDIAYHLDKFERGADKIIYVVGAD-- 168 (212)
T ss_pred -----------------------C-CCeEEEEC--CCCccc-----------hHHHHHHHHHHHhcCCCEEEEEECCC--
Confidence 1 27777664 454443 31 112222222 3444558899999
Q ss_pred CchhHHHH---HHHhhccCCCCCcEEEee--eeeeeC-CccccccCC
Q 013130 160 FPHHENEI---AQSCAACQDSNVSYWMHN--GHVTNN-NEKMSKSLG 200 (449)
Q Consensus 160 ~~H~~~~~---a~~~a~~~~~~~~~~~h~--g~l~~~-G~KMSKSlG 200 (449)
|+.+.+ +.+.+++..+.+++ .|. |+|+.. |.||||+.|
T Consensus 169 --~~~~~~~~~~~~~~lg~~~~~~~-~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 169 --HHGHFKRLFAALELLGYDEAKKL-EHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred --HHHHHHHHHHHHHHcCCCCCCCe-EEEEEEeEEcCCCCCCCCCCC
Confidence 555544 44444543323333 444 788875 999999987
No 70
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.31 E-value=9.3e-12 Score=123.04 Aligned_cols=211 Identities=15% Similarity=0.185 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCccccccc----------------cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 15 LSLSNRYCQEYLVDMADLQCLPPTYQPRVSD----------------HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 15 ~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~----------------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
..+++.|...|.+.|+.|||.+ . |.++|+ +.+.|.+++..-...- + ..-||...-+
T Consensus 105 ~SyaeH~~~~~~~~L~~~gie~-e-~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~---~~~y~Pf~piC 177 (360)
T PF01921_consen 105 ESYAEHFNAPFEEFLDEFGIEY-E-FISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--R---PETYSPFLPIC 177 (360)
T ss_dssp SCHHHHHHHHHHHHHHTTT----E-EEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------TT--SEEEEE
T ss_pred ccHHHHHHHHHHHHHHHcCCce-E-EEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--C---CCCeeeeeeec
Confidence 4689999999999999999975 4 566664 2234444444443322 1 1123322111
Q ss_pred CccccccCccccccc-CCCCCcccccccCccchhccccccCCCCcccCCC-CCCCCCchhhhHHHHHhhcCCCccEEeec
Q 013130 78 PNYGRLSGQRLENNR-AGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGG 155 (449)
Q Consensus 78 ~~yg~ls~~~l~~~~-~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~W-G~grPgWh~e~~~~~~~~~g~~~Dih~~G 155 (449)
+.+|++....+.+.. .+..|. +.-...|.-.+-+.- |.|-..|-++. +|-+.++ .+|+-..|
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~-------------Y~c~~cG~~g~~~i~~g~gKL~WkvDW-~mRW~~l--gVdfEp~G 241 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVT-------------YRCEECGHEGEVDITGGNGKLQWKVDW-PMRWAAL--GVDFEPFG 241 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEE-------------EE--TTS---EEETTTT-EEE-HHHHH-HHHHHHT--T-SEEEEE
T ss_pred cccCCcccceeeEeecCCCEEE-------------EEecCCCCEEEEecCCCcccccCCCcC-hhhhhhc--CceeccCC
Confidence 346664322221110 011110 110111221111111 23334455555 4555667 57999999
Q ss_pred ccCcCchhHHHHHHHhh---ccCCCCCcEEEeeeeeeeCCc-cccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcc
Q 013130 156 IDLIFPHHENEIAQSCA---ACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLN 231 (449)
Q Consensus 156 kDli~~H~~~~~a~~~a---~~~~~~~~~~~h~g~l~~~G~-KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~ 231 (449)
||+.-+-..+-.+.-.| ++.+||.. +.-+|++++|. |||||+||+|+|.|+++-+.|++|||++++..+.+..+
T Consensus 242 KDH~~~GGS~d~~~~I~~~i~g~~pP~~--~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~~~ 319 (360)
T PF01921_consen 242 KDHASPGGSYDTSKRIAREILGYEPPVP--FPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKAKD 319 (360)
T ss_dssp HHHHCTTSHHHHHHHHHHHCC-----EE--EEE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS-EE
T ss_pred CccCCCCCChhhHHHHHHHHhCCCCCCC--CCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcceE
Confidence 99555444444444433 34455544 34599999776 99999999999999999999999999999988889999
Q ss_pred cCHH-HHHHHHHHHHHHHHH
Q 013130 232 YSVL-QLDSASDAVFYIYQT 250 (449)
Q Consensus 232 fs~~-~l~~~~~~l~~l~~~ 250 (449)
|+.+ .+....+.+.++.+.
T Consensus 320 ~~~~~~i~~~~Deyd~~~~~ 339 (360)
T PF01921_consen 320 FSFDLVIPRLYDEYDRLERK 339 (360)
T ss_dssp E--STTHHHHHHHHHHHHHH
T ss_pred eccCcchHHHHHHHHHHHHH
Confidence 9988 777777765555443
No 71
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.20 E-value=4.6e-11 Score=120.50 Aligned_cols=177 Identities=18% Similarity=0.135 Sum_probs=112.6
Q ss_pred hHHHHHH-HHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCccccc
Q 013130 14 PLSLSNR-YCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN 90 (449)
Q Consensus 14 ~~e~~~~-~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~ 90 (449)
..+++.. ..+..++++.+|+|.+ |.+..-++ +.+.+.++++.|.++|++|+.+|.+|+++++| |..
T Consensus 139 ~~~~~~~~~~~~~k~~l~~l~i~f-Dv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~~------- 207 (354)
T PF00750_consen 139 FRELWQKYILEWSKETLQRLYIRF-DVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKF---GDD------- 207 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCT---STS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhc---CCC-------
Confidence 5566666 7778899999999999 65553354 55678999999999999999999999998875 210
Q ss_pred ccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhh--cCCCccEEeecccCcCchhHHHH-
Q 013130 91 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEI- 167 (449)
Q Consensus 91 ~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~--~g~~~Dih~~GkDli~~H~~~~~- 167 (449)
.|.+|-|+ +|.+++-+ -..++...++ .+...-|++.|.| |+.+..
T Consensus 208 ----------------k~~Vl~ks--DGt~~Y~t----------rDiA~~~~r~~~~~~d~~iyV~~~~----q~~hf~~ 255 (354)
T PF00750_consen 208 ----------------KDRVLRKS--DGTSTYLT----------RDIAYHLYRFEEYGFDKIIYVVGAD----QKGHFKQ 255 (354)
T ss_dssp ----------------S-EEEEET--TSEB-HHH----------HHHHHHHHHHCCSS-SEEEEEEEGG----GHHHHHH
T ss_pred ----------------CcceEEcC--CCceEEEc----------chHHHHHHHHhhhccccEEEEecCc----hhhHHHH
Confidence 13445443 34333310 0122222333 4445669999999 655543
Q ss_pred --HHHhhccCCC-CCcEEEee--eeeee-CCc-cccccCCCccCHHHHHH--------------------------hcCh
Q 013130 168 --AQSCAACQDS-NVSYWMHN--GHVTN-NNE-KMSKSLGNFFTIRQITE--------------------------RYHP 214 (449)
Q Consensus 168 --a~~~a~~~~~-~~~~~~h~--g~l~~-~G~-KMSKSlGN~i~~~dll~--------------------------~yg~ 214 (449)
+.+.+++..+ -.++ .|. |+++. +|+ |||+..||+|++.|||+ ..|.
T Consensus 256 l~~~l~~lg~~~~~~~~-~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~ 334 (354)
T PF00750_consen 256 LFAILEALGYDPEAVKL-QHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGV 334 (354)
T ss_dssp HHHHHHHTT-HHHHCTE-EEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCEE-EEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhh
Confidence 4444444322 2334 343 45543 776 89999999999999999 5677
Q ss_pred hHHHHHHhhcCcCCCcccCH
Q 013130 215 LALRHFLISAHYRSPLNYSV 234 (449)
Q Consensus 215 D~lR~~ll~~~~~~d~~fs~ 234 (449)
.++||++|+....+++.|+|
T Consensus 335 ~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 335 GAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHHHHSS-TTS-EEEEC
T ss_pred hHHHHHHHhccCCCCceecC
Confidence 88888888887788887764
No 72
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=9.7e-11 Score=119.04 Aligned_cols=210 Identities=14% Similarity=0.139 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccccccc----------------cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD----------------HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 77 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~----------------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~ 77 (449)
...+++.+...|.+-|+.|||.+ . |.++|+ |.+.|.++++.-..+ -+. +...-|.+-|
T Consensus 101 ~~Sya~hf~~~f~~~l~~~Gi~~-E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~--~~~-e~~~P~~piC- 174 (521)
T COG1384 101 CDSYAEHFLRPFEEFLDEFGIEV-E-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR--ELE-EDWSPFMPIC- 174 (521)
T ss_pred cchHHHHHHHHHHHHHHhcCCce-E-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC--ccc-CCceeccccc-
Confidence 45688999999999999999975 4 566664 333444444444333 111 1112222222
Q ss_pred CccccccCcccccccCCCCCcccccccC--ccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeec
Q 013130 78 PNYGRLSGQRLENNRAGERVAVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 155 (449)
Q Consensus 78 ~~yg~ls~~~l~~~~~g~~~~~~~~k~~--~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~G 155 (449)
+.||++....+.+.-.+.+|+..-.--| -.|.. ...+-..|...| +|-+.++ .+|+-.-|
T Consensus 175 ~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir----~g~~KL~WRvdW------------p~RW~~l--gVd~EPfG 236 (521)
T COG1384 175 EKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR----GGEGKLPWRVDW------------PMRWAAL--GVDFEPFG 236 (521)
T ss_pred cccCCcceeEEEEecCCceEEEEecCCccceeecc----ccCcccccCcCc------------cchhhcc--CcccccCC
Confidence 3567633222211110011211000000 00111 011223343333 2334455 57899999
Q ss_pred ccCcCchhHHHHHHHhh--ccC-CCCCcEEEeeeeeeeCC-ccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcc
Q 013130 156 IDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLN 231 (449)
Q Consensus 156 kDli~~H~~~~~a~~~a--~~~-~~~~~~~~h~g~l~~~G-~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~ 231 (449)
||+.-+-..|--+-..+ +++ +||..++ -.|++++| +|||||.||+|+++|+++-+.|+.|||+++++.+.+.++
T Consensus 237 KDH~a~ggSydtg~~I~~ei~g~~pP~~~~--YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~ 314 (521)
T COG1384 237 KDHAAAGGSYDTGKRIAREIFGYEPPVPFV--YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHID 314 (521)
T ss_pred cccccccCchHHHHHHHHHhcCCCCCCCCc--eEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCccee
Confidence 99665555555443333 335 6776663 48999876 999999999999999999999999999999998888888
Q ss_pred cCHHH-HHHHHHHHHHHHH
Q 013130 232 YSVLQ-LDSASDAVFYIYQ 249 (449)
Q Consensus 232 fs~~~-l~~~~~~l~~l~~ 249 (449)
|+.+. |.+.++.+.++-+
T Consensus 315 ~d~~~~il~lvDEydr~e~ 333 (521)
T COG1384 315 FDFDLGILKLVDEYDRLER 333 (521)
T ss_pred cCCCCChhHHHHHHHHHHH
Confidence 88888 7777766554433
No 73
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.11 E-value=2.9e-10 Score=99.90 Aligned_cols=65 Identities=26% Similarity=0.216 Sum_probs=56.3
Q ss_pred chhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeee-CCccccccC
Q 013130 133 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSL 199 (449)
Q Consensus 133 Wh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSl 199 (449)
|+++|++++..+.+...++|++|+|+.+ |+....++++++++.. +..++|.|+|+. +|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCCCcCCCCC
Confidence 8999999998887777899999999999 9999999999987543 346689999998 569999995
No 74
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=98.90 E-value=3e-08 Score=86.11 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=88.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 013130 232 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 307 (449)
Q Consensus 232 fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~ 307 (449)
||++.+..+.+.+.++|+.+.++........+. +.....+.++...+..+...+..+| +.+++++|+.. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 688889888899999999988764321211110 1112345788899999999999999 99999999999 99999
Q ss_pred H--HHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCC
Q 013130 308 K--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPP 352 (449)
Q Consensus 308 ~--~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~ 352 (449)
. .+|.|++..+||....+.......+..+.+.++.++.+|. |+|.
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~ 126 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPF 126 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccH
Confidence 7 7999999999997432222234456677777777777776 5665
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=98.78 E-value=1.1e-07 Score=81.26 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHH-HhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 013130 241 SDAVFYIYQTLQDCE-VALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 318 (449)
Q Consensus 241 ~~~l~~l~~~~~~~~-~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~ 318 (449)
.+.++|+.+|+..+. ..+.+..+. ......+.++...++.+..++.++| ++|+++.|++. +++++..+|+|++..+
T Consensus 6 ~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~k 83 (129)
T cd07957 6 ANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETA 83 (129)
T ss_pred HhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCC
Confidence 356788888876543 333332221 1123467899999999999999999 89999999999 9999999999999999
Q ss_pred ccCchhh-h-hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHH
Q 013130 319 KKQPKQQ-Q-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEV 358 (449)
Q Consensus 319 pw~~~~~-~-~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~ 358 (449)
||...++ + ......+..+...++.++.+|. |+|. .++++
T Consensus 84 pw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~-~aeei 125 (129)
T cd07957 84 PWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPE-TAEKI 125 (129)
T ss_pred CHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCh-HHHHH
Confidence 9974432 2 2234466677778888888887 6676 44443
No 76
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.69 E-value=3.3e-07 Score=83.67 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=96.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC------CCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 013130 232 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 305 (449)
Q Consensus 232 fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~ 305 (449)
|+.+.+.+..+.+.++||.++++...+.++.+.. .....|++++..++.+..++.++| ++|+++.|++. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 5678888888899999999888765554432111 123457899999999999999999 89999999999 999
Q ss_pred HHH--HHHHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 306 ALK--FINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 306 l~~--~~N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|+. .+|.|++..+||... +.+.........+...++.++.+|. |+|. .+++++.+++
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l~ 140 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHLP 140 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhcc
Confidence 996 779999999999732 1122222344456677888888887 6776 6777777664
No 77
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.66 E-value=3.2e-07 Score=86.72 Aligned_cols=163 Identities=20% Similarity=0.161 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCcccccccCCCC
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGER 96 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~~g~~ 96 (449)
....+.+.|.++|+.||+.+ |..++.|+|++.+++++++|+++|+||.. +. .|
T Consensus 50 ~~~~~~~~i~~dL~wLGl~~-d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-----------~~-------------~~-- 102 (240)
T cd09287 50 PDPEAYDMIPEDLEWLGVKW-DEVVIASDRIELYYEYARKLIEMGGAYVH-----------PR-------------TG-- 102 (240)
T ss_pred chHHHHHHHHHHHHHcCCCC-CCccchhccHHHHHHHHHHHHHcCCcccC-----------cc-------------cC--
Confidence 44556667999999999975 88899999999999999999999999970 00 00
Q ss_pred CcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCC
Q 013130 97 VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD 176 (449)
Q Consensus 97 ~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~ 176 (449)
.||++| |.+|..|+. ...+ ..++.-+=|.|++. ....-+....+++.+
T Consensus 103 ----------~~~~i~------------------ptY~la~vV--DD~~-~gIThViRg~d~~~-~t~~q~~l~~~Lg~~ 150 (240)
T cd09287 103 ----------SKYRVW------------------PTLNFAVAV--DDHL-LGVTHVLRGKDHID-NTEKQRYIYEYFGWE 150 (240)
T ss_pred ----------CcEEEE------------------Eccccceee--eccc-cCCCeEEechhhhh-CCHHHHHHHHHcCCC
Confidence 255553 223332210 1111 02344455688443 222334445666544
Q ss_pred CCCcEEEeeeeeeeCCccccccCCC------c---------cCHHHHHH-hcChhHHHHHHhh-cCcCCCcccCHHHHHH
Q 013130 177 SNVSYWMHNGHVTNNNEKMSKSLGN------F---------FTIRQITE-RYHPLALRHFLIS-AHYRSPLNYSVLQLDS 239 (449)
Q Consensus 177 ~~~~~~~h~g~l~~~G~KMSKSlGN------~---------i~~~dll~-~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~ 239 (449)
+ +.+ .|...++.+|+||||+.+- . .++..+.. .|.|++++-|+.. +--..+..++++.|..
T Consensus 151 ~-P~~-~H~pll~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 151 Y-PET-IHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred C-CcE-EeeeeecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 3 455 6999999999999999842 1 24444443 5899999988877 4445788899888875
Q ss_pred H
Q 013130 240 A 240 (449)
Q Consensus 240 ~ 240 (449)
.
T Consensus 229 ~ 229 (240)
T cd09287 229 I 229 (240)
T ss_pred H
Confidence 4
No 78
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.66 E-value=5.9e-07 Score=93.76 Aligned_cols=202 Identities=18% Similarity=0.210 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--------------C
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------S 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~--------------~ 77 (449)
+++.-....+.+.+.++|+.|||.++.--.+.|++.+.-.+++.+|+++|+|| .|||+.+ .
T Consensus 43 tD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~g~aY-----~C~ct~~~l~~~r~~~~~~~~~ 117 (470)
T TIGR00464 43 TDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAY-----RCYCSKERLERLREEQKANKET 117 (470)
T ss_pred CCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHHHHHHHHHHHHcCCEE-----ecCCChHHHHHHHHHHhhCCCC
Confidence 34555667799999999999999983355678899999999999999999999 4566532 1
Q ss_pred Cccccc-cCcccccc----cCCCC----Ccccc----------------cccCccchhccccccCCCCcccCCCCCCCCC
Q 013130 78 PNYGRL-SGQRLENN----RAGER----VAVDS----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPG 132 (449)
Q Consensus 78 ~~yg~l-s~~~l~~~----~~g~~----~~~~~----------------~k~~~~Df~lwk~~~~~~~~w~s~WG~grPg 132 (449)
|.|..- .+...++. ..|.. ..++. .-....||++.|. .|.|.
T Consensus 118 ~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------dG~pt 184 (470)
T TIGR00464 118 PRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRS-------------DGSPT 184 (470)
T ss_pred CCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEec-------------CCCcc
Confidence 123110 01111110 11111 00000 0011123333332 36677
Q ss_pred chhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHh
Q 013130 133 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 211 (449)
Q Consensus 133 Wh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~ 211 (449)
+|+.|.. .++. ..++.-+-|.|++. |...-.+...+++. +.+++ .|..++. .+|.||||..| .+++.++++.
T Consensus 185 Y~~A~~v--dD~~-~~ithvIrG~d~~~-~t~~~~~l~~aLg~-~~p~~-~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~ 257 (470)
T TIGR00464 185 YNFAVVV--DDYL-MKITHVIRGEDHIS-NTPKQILIYQALGW-KIPVF-AHLPMILDEDGKKLSKRDG-ATSIMQFKEQ 257 (470)
T ss_pred cccHHHH--HHHh-CCCCEEEECchhhc-CHHHHHHHHHHcCC-CCCeE-EEEeeeecCCCccccccCC-CccHHHHHHC
Confidence 7765532 2332 13555568899444 33333444566653 33444 7777754 58999999999 8899999885
Q ss_pred -cChh------------------------HHHHHHhhcCcCCCcccCHHHHH
Q 013130 212 -YHPL------------------------ALRHFLISAHYRSPLNYSVLQLD 238 (449)
Q Consensus 212 -yg~D------------------------~lR~~ll~~~~~~d~~fs~~~l~ 238 (449)
|-|. .+|+|.++..-.+++.|+++.|.
T Consensus 258 g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~ 309 (470)
T TIGR00464 258 GYLPEALINYLALLGWSPPDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQ 309 (470)
T ss_pred CCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcCcccCCCCCCeecHHHHH
Confidence 3454 45555555444466666666644
No 79
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.62 E-value=4.3e-07 Score=94.64 Aligned_cols=218 Identities=15% Similarity=0.141 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC------C----ccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------P----NYG 81 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~------~----~yg 81 (449)
++|.--...|.+.+.++++.||+.+ |-..++|++.+...++..+|+++|.||. +||.... + .|-
T Consensus 53 TDp~R~~~e~~~~I~~dL~WLGl~w-D~~~~qSdr~~~y~~~a~~Li~~G~AY~-----C~cs~eel~~~r~~~~~~~~R 126 (523)
T PLN03233 53 TNPSKEKAEFEESIIEDLGKIEIKP-DSVSFTSDYFEPIRCYAIILIEEGLAYM-----DDTPQEEMKKERADRAESKHR 126 (523)
T ss_pred CCCCccchHHHHHHHHHHHHhCCCC-CCCccccccHHHHHHHHHHHHHcCCeEe-----cCCCHHHHHHHHhhhccCccc
Confidence 4566666789999999999999997 7778899999999999999999999995 4544321 0 111
Q ss_pred cccCc-c---cccccCCC--------C--CcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCC
Q 013130 82 RLSGQ-R---LENNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 147 (449)
Q Consensus 82 ~ls~~-~---l~~~~~g~--------~--~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~ 147 (449)
.++.. . .+++..|. | +++.....+.+||++.+....-.+.....| .+.|-++..|.. -....|
T Consensus 127 ~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~~V-DD~l~g- 203 (523)
T PLN03233 127 NQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLACPI-VDSIEG- 203 (523)
T ss_pred cCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCceee-eccccC-
Confidence 11110 0 11122221 1 111111223468888875322223334455 566776655521 111112
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccC------CCcc---------CHHHHHH-h
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-R 211 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl------GN~i---------~~~dll~-~ 211 (449)
++.-+=|.|++. +..--..+..+++.. .+.+ .|-+++...|.||||+. .+.| |+..+-. .
T Consensus 204 -ITHviRg~E~~~-~t~~q~~l~~aLg~~-~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG 279 (523)
T PLN03233 204 -VTHALRTTEYDD-RDAQFFWIQKALGLR-RPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRG 279 (523)
T ss_pred -CCeEEechhhhc-CCHHHHHHHHHhCCC-CCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCC
Confidence 333344677443 222333444555443 3445 56788889999999997 3455 4677665 5
Q ss_pred cChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 212 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 212 yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
|.|+++|=|++. +.-..+..++++.|....+
T Consensus 280 ~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR 311 (523)
T PLN03233 280 IDIDALKMFMCSQGASRRVVNLDWAKFWAENK 311 (523)
T ss_pred CCHHHHHHHHHHhCCCCCCceecHHHHHHHHH
Confidence 999999999988 5667889999999987654
No 80
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.57 E-value=8.3e-07 Score=92.89 Aligned_cols=220 Identities=18% Similarity=0.102 Sum_probs=130.7
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--------Cccccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------PNYGRL 83 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~--------~~yg~l 83 (449)
++|..-...|.+.+.++++.|||.+++-..++|+|.+...++..+|+++|+||. +||.... ...|.-
T Consensus 71 Td~~r~~~e~~~~I~~dL~wLGi~~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~-----c~cs~eei~~~R~~~~~~g~~ 145 (554)
T PRK05347 71 TNPEKEDQEYVDSIKEDVRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYV-----DDLSAEEIREYRGTLTEPGKN 145 (554)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCCCCCceeeecCHHHHHHHHHHHHHcCCEee-----CCCCHHHHHHHhhhhhhcCCC
Confidence 455566678999999999999999856667889999999999999999999994 4554321 011211
Q ss_pred cC---ccc-------ccccCCCCC--------cccccccCc--cchhccccccCCCCcccCCCCCCCCCchhhhHHHHHh
Q 013130 84 SG---QRL-------ENNRAGERV--------AVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAH 143 (449)
Q Consensus 84 s~---~~l-------~~~~~g~~~--------~~~~~k~~~--~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~ 143 (449)
++ +.. +.+..|... ..+-.-.|+ +|+++.+....-.|.-...| .+.|-++..|.. ...
T Consensus 146 ~~~R~~s~eenl~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~~v-dD~ 223 (554)
T PRK05347 146 SPYRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAHCI-SDA 223 (554)
T ss_pred CCccCCCHHHHHHHHHHHHCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCcccee-ecc
Confidence 11 111 123344311 111111233 58887664211111111122 235666655521 111
Q ss_pred hcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCC------cc---------CHHHH
Q 013130 144 YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN------FF---------TIRQI 208 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN------~i---------~~~dl 208 (449)
..| ++.-+=|.|.+- |..--..+..+++....+.+ .+-|++.++|.||||+.+. .+ |+..+
T Consensus 224 l~g--ITHvlRg~E~~~-~t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~l 299 (554)
T PRK05347 224 IEG--ITHSLCTLEFED-HRPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGL 299 (554)
T ss_pred ccC--CceEEecccccc-ChHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHH
Confidence 112 222222455222 23333344567754433445 3568899999999999965 12 67777
Q ss_pred HH-hcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 209 TE-RYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 209 l~-~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
.. .|.|+++|=|++. +--..+..++++.|....+
T Consensus 300 rrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nR 335 (554)
T PRK05347 300 RRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIR 335 (554)
T ss_pred HHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHH
Confidence 65 5999999999988 5556788999999987654
No 81
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.55 E-value=1e-06 Score=73.92 Aligned_cols=111 Identities=8% Similarity=0.127 Sum_probs=79.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 013130 232 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 311 (449)
Q Consensus 232 fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N 311 (449)
|+.+.+....|.+.++++.+...........+.......|.++++.+.++.+++.++| ++|++++|++. +++++..+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHHH
Confidence 5677788878888888777654321111000001123467899999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhH
Q 013130 312 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSE 357 (449)
Q Consensus 312 ~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~ 357 (449)
+|++..+|+ +..+.+.++.++.+|. |+|. .+++
T Consensus 79 ~~~~~~~p~------------~~~~~~~l~~~~~lL~P~~P~-~aee 112 (117)
T cd07958 79 KYKKKDAQH------------AAVLREALETLVLLLAPFAPH-IAEE 112 (117)
T ss_pred Hhhccccch------------HHHHHHHHHHHHHHHcccchH-HHHH
Confidence 999877662 2455677777888887 5665 3343
No 82
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.54 E-value=1.6e-06 Score=90.68 Aligned_cols=183 Identities=20% Similarity=0.239 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCcc--------ccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQ--------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------ 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~--------~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~------ 77 (449)
+++.-....+.+.+.++|+.|||.+ |-- .+.|++.+.-.+++++|+++|+||. |||+...
T Consensus 46 tD~~R~~~~~~~~i~~~L~wlGl~~-De~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~-----C~cs~eel~~~r~ 119 (476)
T PRK01406 46 TDQERSTEEAEEAILEGLKWLGLDW-DEGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYY-----CYCTPEELEAMRE 119 (476)
T ss_pred CCCCCCChHHHHHHHHHHHHCCCCC-CCCCccCCCCceehhcCHHHHHHHHHHHHHcCCeee-----cCCCHHHHHHHHH
Confidence 3455566788999999999999997 533 4788999999999999999999994 5554321
Q ss_pred --------Ccccccc-Cccccc----ccCCCCCccc--------------------ccccCccchhccccccCCCCcccC
Q 013130 78 --------PNYGRLS-GQRLEN----NRAGERVAVD--------------------SRKRNPADFALWKAAKAGEPSWDS 124 (449)
Q Consensus 78 --------~~yg~ls-~~~l~~----~~~g~~~~~~--------------------~~k~~~~Df~lwk~~~~~~~~w~s 124 (449)
|.|..-. +...++ +..|.+..++ ..-....||++.|.
T Consensus 120 ~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~Rs---------- 189 (476)
T PRK01406 120 EQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRS---------- 189 (476)
T ss_pred HHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEec----------
Confidence 1121100 000000 1112110000 00001135555443
Q ss_pred CCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHH---HhhccCCCCCcEEEeeeeee-eCCccccccCC
Q 013130 125 PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLG 200 (449)
Q Consensus 125 ~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~---~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlG 200 (449)
.|.|.+|..+. ......| ++.-+-|.| |+.+.+-| ..+++.. .+++ .|..++. .+|.||||..|
T Consensus 190 ---DG~ptY~~a~v-VdD~~~~--ithvIrG~d----~~~~t~~q~~l~~alG~~-~p~~-~H~pli~~~~g~klSKR~g 257 (476)
T PRK01406 190 ---DGTPTYNFAVV-VDDHLMG--ITHVIRGED----HLSNTPKQILLYEALGWE-VPVF-AHLPLILGPDGKKLSKRHG 257 (476)
T ss_pred ---CCCccccchHH-HHHHHcC--CCEEEECch----hhcCHHHHHHHHHHhCCC-CCeE-EEeeeeeCCCCCcccCcCC
Confidence 34566665443 1223333 355557899 55555444 4556543 3444 7877764 68999999999
Q ss_pred CccCHHHHHHh-cChhHHHHHHhh
Q 013130 201 NFFTIRQITER-YHPLALRHFLIS 223 (449)
Q Consensus 201 N~i~~~dll~~-yg~D~lR~~ll~ 223 (449)
.+++.++.+. |-|.+++-|++.
T Consensus 258 -~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 258 -ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred -ccCHHHHHHCCCCHHHHHHHHHH
Confidence 7899999875 577666666654
No 83
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.51 E-value=7e-07 Score=91.86 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=122.7
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--------------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~-------------- 77 (449)
++++--.+.+.+.++++|+.|||.+ |.+.+.|+.++.+.+++++|+++|+||. +||+...
T Consensus 44 TD~~Rs~~~~~~~I~e~L~wLGI~~-De~y~QSer~~~y~~~~e~L~e~G~AY~-----C~Ct~eel~~~r~~~~~~~~~ 117 (445)
T PRK12558 44 TDLERSKQEYADAIAEDLKWLGINW-DRTFRQSDRFDRYDEAAEKLKAAGRLYP-----CYETPEELELKRKIQLSRGLP 117 (445)
T ss_pred CCcccchHHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHHHHHHHHHCCCEEE-----ecCchHHHHHHHHHHHhCCCC
Confidence 4455566889999999999999998 8788888888889999999999999994 4554321
Q ss_pred Ccccc----ccCcccc-cccCCCCCcccc-------------------cccCccchhccccccCCCCcccCCCCCCCCCc
Q 013130 78 PNYGR----LSGQRLE-NNRAGERVAVDS-------------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGW 133 (449)
Q Consensus 78 ~~yg~----ls~~~l~-~~~~g~~~~~~~-------------------~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgW 133 (449)
+.|.. |+..... ....|....++. .-....||++.|. .|.|.+
T Consensus 118 ~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~-------------dg~PtY 184 (445)
T PRK12558 118 PIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRA-------------DGSYLY 184 (445)
T ss_pred CCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEec-------------CCCccc
Confidence 12211 1100000 001111100000 0001234554442 255666
Q ss_pred hhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeeee-CCccccccCCCccCHHHHH
Q 013130 134 HIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT 209 (449)
Q Consensus 134 h~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll 209 (449)
|..|+. ..++ -.++.-+=|.| |..+.|.|. .|++- +++.+ .|...++. +|.||||+.|. +++.++.
T Consensus 185 ~fA~vV--DD~~-m~ITHViRG~d----~l~~t~~q~~l~~alg~-~~P~f-~H~pli~~~~g~KLSKR~g~-~sv~~~r 254 (445)
T PRK12558 185 TLPSVV--DDID-MGITHIIRGED----HVTNTAVQIQIFEALGA-KPPVF-AHLSLLTGADGKGLSKRLGG-LSIRSLR 254 (445)
T ss_pred ccccee--cccc-CCCCEEEechh----hhhCCHHHHHHHHHhCC-CCCeE-EEcccccCCCcccccccCCC-cCHHHHH
Confidence 655521 1111 02444455788 555555544 55543 34444 89999885 89999999886 6788877
Q ss_pred H-hcChhHHHHHHhh-c-CcCCCcccCHHHHHHH
Q 013130 210 E-RYHPLALRHFLIS-A-HYRSPLNYSVLQLDSA 240 (449)
Q Consensus 210 ~-~yg~D~lR~~ll~-~-~~~~d~~fs~~~l~~~ 240 (449)
+ .|-|++++=|++. + ++..+--||.+.|.+.
T Consensus 255 ~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 255 EDGIEPMAIASLLARLGTSDPVEPYTSMEELAES 288 (445)
T ss_pred HCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHh
Confidence 6 6999999998876 4 4444444788887664
No 84
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.48 E-value=9.5e-07 Score=93.05 Aligned_cols=214 Identities=21% Similarity=0.221 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC---------CC-cccc
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGR 82 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~---------~~-~yg~ 82 (449)
+|.--...|.+.+.++|+.|||.+ |..+++|+|++.+.+++.+|+++|+||. +||..+ ++ .|-.
T Consensus 136 Dp~R~~~e~~~~I~edL~wLGi~~-d~~~~qSd~~~~y~~~a~~Li~~G~AY~-----C~cs~eei~~~r~~g~~~~cR~ 209 (560)
T TIGR00463 136 DPRRVKPEAYDMILEDLDWLGVKG-DEVVYQSDRIEEYYDYCRKLIEMGKAYV-----CDCPPEEFRELRNDGVACACRD 209 (560)
T ss_pred CcccccHHHHHHHHHHHHHcCCCC-CccccccccHHHHHHHHHHHHHcCCcee-----ecCCHHHHHHHHhCCCCCCccC
Confidence 444445678999999999999996 8899999999999999999999999995 444322 11 1111
Q ss_pred ccC-ccc---ccccCCC--------CCcccc--cccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCC
Q 013130 83 LSG-QRL---ENNRAGE--------RVAVDS--RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 148 (449)
Q Consensus 83 ls~-~~l---~~~~~g~--------~~~~~~--~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~ 148 (449)
++. .++ +++..|. |+..+. .-..-+|+++++....-.+.-...| .+.|.++..|+. -....|
T Consensus 210 ~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~~V-DD~l~g-- 285 (560)
T TIGR00463 210 RSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSVPI-DDHLLG-- 285 (560)
T ss_pred CCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccceEe-ecccCC--
Confidence 221 011 1233332 111111 1122368888765321112111222 245666655521 111222
Q ss_pred ccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeeeeC-CccccccCC-------Cc--------cCHHHHH
Q 013130 149 FDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTNN-NEKMSKSLG-------NF--------FTIRQIT 209 (449)
Q Consensus 149 ~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~-G~KMSKSlG-------N~--------i~~~dll 209 (449)
++.-+=|.|++. +.+.|. .+++. .++.+ .|.+++..+ |.|+|||.+ -+ .|+..+-
T Consensus 286 ITHviRg~E~~~----nT~rq~yl~~~lg~-~~P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lr 359 (560)
T TIGR00463 286 VTHVLRGKDHID----NERKQQYIYMYFGW-ELPEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVR 359 (560)
T ss_pred CCeEEechhhhc----CCHHHHHHHHHcCC-CCCeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHH
Confidence 333334688544 222222 33333 34455 799999875 569998763 11 2344443
Q ss_pred H-hcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 210 E-RYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 210 ~-~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
. .|.|+++|=|++. +.-..+..++++.|....+
T Consensus 360 rrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr 394 (560)
T TIGR00463 360 RRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNK 394 (560)
T ss_pred HCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHH
Confidence 3 5999999999988 4567889999999987543
No 85
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.46 E-value=3.5e-06 Score=70.81 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=75.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHH-HHHHHHH
Q 013130 232 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 310 (449)
Q Consensus 232 fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l-~~l~~~~ 310 (449)
|+.+.+....|.+.++++.+.. ...+..+.......|++++..++.+.+++.++| ++|+++.|++. + +++...+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEE---LIETEGELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH---HHhccCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 4555555444544444444332 222211111224567899999999999999999 89999999999 8 9999999
Q ss_pred HHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHH
Q 013130 311 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEV 358 (449)
Q Consensus 311 N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~ 358 (449)
|.|++..+||. ....+...++.++.+|. |+|. .++++
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P~~P~-~aeei 113 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAPFAPH-LAEEI 113 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcCcchH-hHHHH
Confidence 99999988871 11245577777888887 5665 44433
No 86
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.46 E-value=3.1e-06 Score=92.36 Aligned_cols=220 Identities=18% Similarity=0.064 Sum_probs=132.4
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--------------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~-------------- 77 (449)
++|..-...|.+.+.++++.||+.++....++|+|.+...++..+|+++|.||. +||....
T Consensus 73 Td~~r~~~e~~~~I~~dl~wLG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~-----c~cs~eei~~~r~~~~~~g~~ 147 (771)
T PRK14703 73 TNPETEDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYV-----DSVSEEEIRELRGTVTEPGTP 147 (771)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCCCCCceEeecCHHHHHHHHHHHHHcCCccc-----CcCCHHHHHHHHhhhhhcCCC
Confidence 445555678999999999999999854557889999999999999999999995 4544220
Q ss_pred CccccccCc-cc---ccccCCCC--------C--cccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHh
Q 013130 78 PNYGRLSGQ-RL---ENNRAGER--------V--AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAH 143 (449)
Q Consensus 78 ~~yg~ls~~-~l---~~~~~g~~--------~--~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~ 143 (449)
+.|-.++.. ++ +.+..|.. . ++.....+.+|+++++....-.+.....|- +.|-+|..|.. -..
T Consensus 148 ~~~R~~s~ee~l~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~-i~PtYdfa~~v-dD~ 225 (771)
T PRK14703 148 SPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWC-IYPMYDFAHPL-EDA 225 (771)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCC-cCCCcccccee-ecc
Confidence 112222211 11 12333331 1 111111233689988753221222212221 36666655421 111
Q ss_pred hcCCCccEEeecccCcCchhHHHHHHHhhccCCCC-CcEEEeeeeeeeCCccccccC-------CCcc--------CHHH
Q 013130 144 YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNFF--------TIRQ 207 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~-~~~~~h~g~l~~~G~KMSKSl-------GN~i--------~~~d 207 (449)
..| +..-+=|.|+.- +..--..+..++++.++ +.+ .+-|++.+.|.||||+. |-+- |+..
T Consensus 226 l~g--ITHvlRg~E~~~-~~~~~~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~ 301 (771)
T PRK14703 226 IEG--VTHSICTLEFEN-NRAIYDWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAG 301 (771)
T ss_pred ccC--CcEEEecHhhhh-ccHHHHHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHH
Confidence 122 233334577332 22222333466655433 556 46799999999999998 3321 4555
Q ss_pred HHH-hcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 208 ITE-RYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 208 ll~-~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
+-. .|.|+++|=|++. +.-..+..++++.|....+
T Consensus 302 lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 302 QRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred HHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHH
Confidence 554 5999999999988 5556788999999987654
No 87
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.45 E-value=3.4e-06 Score=70.38 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 013130 236 QLDSASDAVFYIYQTLQDCEVALSPFQEHG---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 312 (449)
Q Consensus 236 ~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~ 312 (449)
.+....+.+..+++.+.++.....+..+.. .....|.++++.++.+.+++.++| ++|+++.|++. +++|+..+|.
T Consensus 3 ~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n~ 80 (117)
T cd07375 3 RLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELNW 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhccH
Confidence 344444444455555555444433321110 113357899999999999999999 89999999999 9999999999
Q ss_pred HHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 013130 313 SLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 348 (449)
Q Consensus 313 yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg 348 (449)
|++..+||...++. ....+..+...+..++.+|.
T Consensus 81 y~~~~~pw~~~~~~--~~~~~~~~~~~l~~l~~lL~ 114 (117)
T cd07375 81 YLDELKPALQTEEL--REAVLAVLRAALVVLTKLLA 114 (117)
T ss_pred HHHHhhHHHcCchh--HHHHHHHHHHHHHHHHHHHc
Confidence 99999999744321 22233344455555555554
No 88
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.41 E-value=9.4e-06 Score=84.66 Aligned_cols=211 Identities=15% Similarity=0.072 Sum_probs=122.2
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--------------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~-------------- 77 (449)
+++.-....+.+.+.++|+.|||.++.-..+.|++.+.-.++.++|+++|+|| .|||+...
T Consensus 46 TD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCt~eel~~~r~~~~~~~~~ 120 (513)
T PRK14895 46 TDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNNLYKEAALKLLQNGKAY-----YCFTRQEEIERQRQQALENKQH 120 (513)
T ss_pred CCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcHHHHHHHHHHHHHcCCeE-----EecCcHHHHHHHHHhhhccCCC
Confidence 34555667889999999999999984345678899999999999999999999 45665321
Q ss_pred CccccccCcccc--cccCCCCCcccccccCccc-hhccccccCCCCcccC----CC----CCCCCCchhhhHHHHHhhcC
Q 013130 78 PNYGRLSGQRLE--NNRAGERVAVDSRKRNPAD-FALWKAAKAGEPSWDS----PW----GPGRPGWHIECSAMSAHYLS 146 (449)
Q Consensus 78 ~~yg~ls~~~l~--~~~~g~~~~~~~~k~~~~D-f~lwk~~~~~~~~w~s----~W----G~grPgWh~e~~~~~~~~~g 146 (449)
+.|.... +++. ....|.+..++ .| .|.+ -+.|...-.|+++++. ++ ..|.|.+|..+. ...+.
T Consensus 121 ~~Y~~~c-r~~~~~~~~~~~~~~iR-~k-~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~v--VDD~~- 194 (513)
T PRK14895 121 FIFNSEW-RDKDPSIYPTDIKPVIR-LK-TPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVV--VDDHD- 194 (513)
T ss_pred CCCChhh-cccChhhhhcCCCeeEE-EE-cCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHH--HHHHh-
Confidence 1121100 0110 00001000000 00 0000 0011111112222211 11 135677776543 22332
Q ss_pred CCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHH-hcChhHHHHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFL 221 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~l 221 (449)
..++--+-|.| |..+.+.|. .|++ ...+.+ .|..+|+ .+|.||||+.|.+ .+.++.+ .|-|++++=|+
T Consensus 195 m~ithVIRG~d----~~~~t~~q~~l~~aLG-~~~p~~-~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~l 267 (513)
T PRK14895 195 MGITHIIRGDD----HLTNAARQLAIYQAFG-YAVPSM-THIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYL 267 (513)
T ss_pred cCCCEEEECch----HhhhHHHHHHHHHHcC-CCCCeE-EEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHH
Confidence 13454557899 666665554 5554 334444 8999998 7999999999974 6667665 69999999888
Q ss_pred hh-c-CcCCCcccCHHHHHHH
Q 013130 222 IS-A-HYRSPLNYSVLQLDSA 240 (449)
Q Consensus 222 l~-~-~~~~d~~fs~~~l~~~ 240 (449)
+. + ++...--||.+.+.+.
T Consensus 268 a~LG~s~~~~e~~~~~el~~~ 288 (513)
T PRK14895 268 LRLGWSHGDDEIISMTQAIDW 288 (513)
T ss_pred HHhCCCCCCcCCCCHHHHHhh
Confidence 75 3 4444445777777653
No 89
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.41 E-value=3.7e-06 Score=86.23 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--------------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~-------------- 77 (449)
+++.-....+.+.+.++|+.|||.+ |--.+.|++.+.-.+++++|+++|.||. |||+.+-
T Consensus 41 TD~~R~~~e~~~~I~~~L~WlGl~w-De~y~QSeR~~~Y~~~a~~Li~~G~AY~-----C~cs~eel~~~r~~~~~~g~~ 114 (433)
T PRK12410 41 TDKERNIEGKDKEILEILNLFGISW-DKLVYQSENLKFHRQMAEKLLSEKKAFA-----CFCSEEELEAKKEKAKNEKKP 114 (433)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCC-CCCeehhccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHhhcCCC
Confidence 3444556678899999999999998 6667889999999999999999999994 5554320
Q ss_pred Cccccc-cCcccccc-cCCCC----Ccccc---------------cccCccchhccccccCCCCcccCCCCCCCCCchhh
Q 013130 78 PNYGRL-SGQRLENN-RAGER----VAVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 136 (449)
Q Consensus 78 ~~yg~l-s~~~l~~~-~~g~~----~~~~~---------------~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e 136 (449)
+.|... .+...++. ..|.. ..+.. .-....||++.|. .|.|.+|..
T Consensus 115 ~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~PtY~fA 181 (433)
T PRK12410 115 YRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRA-------------DKTPTYNFA 181 (433)
T ss_pred CCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcC-------------CCCcccccc
Confidence 112110 01111110 01110 00000 0011124444432 245666655
Q ss_pred hHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHH-h
Q 013130 137 CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-R 211 (449)
Q Consensus 137 ~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~ 211 (449)
++.- ....| ++.-+=|.| |..+.|.|. .|++-++|+. |.|...++ .+|+||||+.|. .++.++.+ .
T Consensus 182 ~vVD-D~~mg--IThViRG~d----~l~~tp~Qi~Ly~aLg~~~pp~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G 252 (433)
T PRK12410 182 CAVD-DMLYD--ISLIIRGED----HVSNTPKQILIREALGYNKEIT-YAHLPIILNEEGKKMSKRDNA-SSVKWLLEQG 252 (433)
T ss_pred chhc-hhhcC--CCEEEechh----hhhCcHHHHHHHHHcCCCCCCe-EEEeeeeeCCCCCeeecccCh-hhHHHHHHCC
Confidence 4321 11122 344455789 666666554 5565454444 48988775 699999999985 56777765 6
Q ss_pred cChhHHHHHHhh-c-CcCCCcccCHHHHHH
Q 013130 212 YHPLALRHFLIS-A-HYRSPLNYSVLQLDS 239 (449)
Q Consensus 212 yg~D~lR~~ll~-~-~~~~d~~fs~~~l~~ 239 (449)
|.|++++=|++. + +.. +--|+.+.+.+
T Consensus 253 ~~PeAi~n~l~~lG~~~~-~e~~~~~eli~ 281 (433)
T PRK12410 253 FLPSAIANYLILLGNKTP-KEIFTLEEAIE 281 (433)
T ss_pred CCHHHHHHHHHHhCCCCc-ccccCHHHHHH
Confidence 999999999876 3 322 34466665554
No 90
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.39 E-value=3.2e-06 Score=88.56 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=130.6
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC----C------ccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----P------NYG 81 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~----~------~yg 81 (449)
++|..-...|.+.+.++++.|||.+ |-.+.+|+|.+.+.++..+|+++|.||. +||.... . .|-
T Consensus 93 TDp~r~~~e~~~~I~~dL~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY~-----C~cs~eei~~~R~~~~~~~~R 166 (574)
T PTZ00437 93 TNPETEEQVYIDAIMEMVKWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAYV-----DHSTPDELKQQREQREDSPWR 166 (574)
T ss_pred CCccccChHHHHHHHHHHHHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEEE-----cCCCHHHHHHHhhcccCCccc
Confidence 5566677889999999999999997 7777889999999999999999999994 5554321 0 111
Q ss_pred cccCc-cc---ccccCCC-----C---Cccccc--ccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCC
Q 013130 82 RLSGQ-RL---ENNRAGE-----R---VAVDSR--KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 147 (449)
Q Consensus 82 ~ls~~-~l---~~~~~g~-----~---~~~~~~--k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~ 147 (449)
.++.- +| ++|..|. . +..+.. .-+-+|+++.+-.....|.-..+| .+.|-++..|
T Consensus 167 ~~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~---------- 235 (574)
T PTZ00437 167 NRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH---------- 235 (574)
T ss_pred cCCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------
Confidence 11110 11 1233332 1 111111 112246665432211122222345 4566665554
Q ss_pred CccEEeecccCcC------ch--hHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCc---------------cC
Q 013130 148 KFDIHGGGIDLIF------PH--HENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FT 204 (449)
Q Consensus 148 ~~Dih~~GkDli~------~H--~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~ 204 (449)
++|=|..|+-++. .| -.+|+. ..+.... +.. .+-+-++++|.|||||.... .|
T Consensus 236 ~vdD~l~gITHvlct~Ef~~r~~~y~wl~--~~l~l~~-p~~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~T 311 (574)
T PTZ00437 236 CLIDSLEDIDYSLCTLEFETRRESYFWLL--EELNLWR-PHV-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLT 311 (574)
T ss_pred eeechhcCCCEEeeechhhcccHHHHHHH--HHhCCcc-cce-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchh
Confidence 5566666666443 01 112443 4443332 234 36688999999999999874 36
Q ss_pred HHHHHH-hcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 205 IRQITE-RYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 205 ~~dll~-~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
+..+.. .|.|+++|=|++. +--..+..++++.|....+
T Consensus 312 i~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 312 LAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred HHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 666654 5999999999988 4557888999999987654
No 91
>PLN02907 glutamate-tRNA ligase
Probab=98.37 E-value=4e-06 Score=91.46 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=131.3
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC---------CC-ccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYG 81 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~---------~~-~yg 81 (449)
++|..-...|.+.+.++++.||+.+ |-..++|++.+...++..+|+++|.||.. +|... ++ .|-
T Consensus 255 Tdp~r~~~e~~~~I~~dl~wLG~~~-d~~~~qS~r~~~y~~~a~~Li~~G~aY~~-----~~~~~~~~~~~~~~~~~~~R 328 (722)
T PLN02907 255 TNPSKESDEFVENILKDIETLGIKY-DAVTYTSDYFPQLMEMAEKLIKEGKAYVD-----DTPREQMRKERMDGIESKCR 328 (722)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCC-CCcccccccHHHHHHHHHHHHHcCCeeec-----CCCHHHHHHHHhcCCCCCcc
Confidence 4555566789999999999999997 77889999999999999999999999962 22211 10 111
Q ss_pred cccCcc----cccccCCC--------CCccc--ccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCC
Q 013130 82 RLSGQR----LENNRAGE--------RVAVD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 147 (449)
Q Consensus 82 ~ls~~~----l~~~~~g~--------~~~~~--~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~ 147 (449)
.++.-. .++|..|. |..++ ..-.+.+|+++-+....-++.+...| .+.|-++..|.. -....|
T Consensus 329 ~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~~v-dD~~~g- 405 (722)
T PLN02907 329 NNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFACPF-VDALEG- 405 (722)
T ss_pred CCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCceEE-EcccCC-
Confidence 121100 11233332 11111 11112358888765322223444555 667777665521 011112
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccC------CCcc---------CHHHHHH-h
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-R 211 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl------GN~i---------~~~dll~-~ 211 (449)
++.-+=|.|++- +...-..+..+++.+ .+.+ .|-|+++++|.||||+. ...+ |+..+-. .
T Consensus 406 -IThvlRg~e~~~-~t~~q~~l~~~lg~~-~p~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG 481 (722)
T PLN02907 406 -VTHALRSSEYHD-RNAQYYRILEDMGLR-KVHI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRG 481 (722)
T ss_pred -CceEeecHhhhh-ChHHHHHHHHHcCCC-CCee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcC
Confidence 233333566332 122222333555444 3455 46789999999999998 2223 4555543 4
Q ss_pred cChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 212 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 212 yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
|.++++|=|+.. +.-.++..|+++.|....+
T Consensus 482 ~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr 513 (722)
T PLN02907 482 LKIEALKQFILSQGASKNLNLMEWDKLWTINK 513 (722)
T ss_pred CCHHHHHHHHHHhCCCcCCccccHHHHHHHHH
Confidence 999999999988 4667889999999987543
No 92
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.36 E-value=5.9e-06 Score=87.26 Aligned_cols=219 Identities=15% Similarity=0.099 Sum_probs=128.1
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC---------C-Cccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------S-PNYG 81 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~---------~-~~yg 81 (449)
++|.--...|.+.+.++++.||+.++.-..+.|++.+...++..+|+++|+|| +++|... + ..|-
T Consensus 94 TDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSdr~d~y~e~a~~Li~~G~AY-----~c~cs~eei~~~r~~g~p~~~R 168 (601)
T PTZ00402 94 TNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSDYMDLMYEKAEELIKKGLAY-----CDKTPREEMQKCRFDGVPTKYR 168 (601)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCCCCCceeeccccHHHHHHHHHHHHHcCCEE-----EecCCHHHHHHHHhCCCCCCCC
Confidence 45666667899999999999999973335678999999999999999999999 4444422 1 1222
Q ss_pred cccCc-cc---ccccCCCC----------CcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCC
Q 013130 82 RLSGQ-RL---ENNRAGER----------VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 147 (449)
Q Consensus 82 ~ls~~-~l---~~~~~g~~----------~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~ 147 (449)
.++.- .+ ..+..|.. +.+.....+.+||++.+....-.+.....| .|.|.++..|.. -....|
T Consensus 169 ~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~-dgyPtYdfA~vV-DD~l~g- 245 (601)
T PTZ00402 169 DISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKY-KAYPTYDFCCPI-IDSVEG- 245 (601)
T ss_pred CCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCC-ceeeccCcceee-EccccC-
Confidence 22210 01 11121210 011111123468888764211111111122 356666655421 011112
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCc-c--------------CHHHHH-Hh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF-F--------------TIRQIT-ER 211 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~-i--------------~~~dll-~~ 211 (449)
++.-+=|.|++- |..--..+..+++.. .+.+ .|.+.++.+|.||||+.+.- | |+.-|. ..
T Consensus 246 -ITHvlRg~E~l~-~tp~q~~L~~aLg~~-~P~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG 321 (601)
T PTZ00402 246 -VTHALRTNEYHD-RNDQYYWFCDALGIR-KPIV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRG 321 (601)
T ss_pred -CceEeechhhhh-CcHHHHHHHHHhCCC-CceE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcC
Confidence 333344577443 333333444555444 3445 68898889999999998752 1 222222 36
Q ss_pred cChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 212 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 212 yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
|.++++|=||.. +--.++..|+++.|....+
T Consensus 322 ~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 322 LKMEALRQFVQEQGMSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 999999999988 4667899999999987653
No 93
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.28 E-value=1.6e-05 Score=70.82 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=95.7
Q ss_pred hcChhHHHHHHhhcCcCCCcccCHHHHHHHHH-H---HHHHHHHHHHHHHhcCC-ccc-CC-----CCCCCChhHHHHHH
Q 013130 211 RYHPLALRHFLISAHYRSPLNYSVLQLDSASD-A---VFYIYQTLQDCEVALSP-FQE-HG-----KTARINPAAEDCIN 279 (449)
Q Consensus 211 ~yg~D~lR~~ll~~~~~~d~~fs~~~l~~~~~-~---l~~l~~~~~~~~~~~~~-~~~-~~-----~~~~~d~~l~~~l~ 279 (449)
..|.|++||++|+....++++|+++.+..... + +..-+.|+..+...... ... .. ...+.+..+...+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 45789999999999999999999999765432 1 12222333333222111 000 00 01122345677777
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCch-hhhhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 280 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 280 ~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~-~~~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
.+.+.+..++ .+.+++.++.. +.++...+|.|++....-... .-...+...+.++...+...+.+|||.+.
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888888 89999999999 999999999999876432101 11224677888999999999999999764
No 94
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.27 E-value=2.4e-05 Score=74.23 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCc---------cccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcccccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTY---------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLS 84 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~---------~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls 84 (449)
+..--..+.+.+.++++.|||.+ |- ....|++.+...+...+|+++|
T Consensus 45 ~~r~~~~~~~~i~~dL~wlGl~~-d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g----------------------- 100 (239)
T cd00808 45 QERSVPEAEEAILEALKWLGLDW-DEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG----------------------- 100 (239)
T ss_pred CCCCchHHHHHHHHHHHHcCCCC-CcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-----------------------
Confidence 34444567888999999999997 65 4567788888888899998888
Q ss_pred CcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhH
Q 013130 85 GQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 164 (449)
Q Consensus 85 ~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~ 164 (449)
.|.|.+|..+++- .... .++.-+=|.|++- |..
T Consensus 101 -------------------------------------------dg~ptY~~a~~vD-D~~~--~ithViRG~D~~~-~t~ 133 (239)
T cd00808 101 -------------------------------------------DGFPTYHLANVVD-DHLM--GITHVIRGEEHLS-STP 133 (239)
T ss_pred -------------------------------------------CCCcccccHHHHh-HHhc--CCCEEEEChhhhh-ChH
Confidence 1223333322211 0111 2455566788332 333
Q ss_pred HHHHHHhhccCCCCCcEEEeeeee-eeCCccccccCCCccCHHHHHH-hcChhHHHHHHhhcCcC---CCcccCHHHHH
Q 013130 165 NEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR---SPLNYSVLQLD 238 (449)
Q Consensus 165 ~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~~---~d~~fs~~~l~ 238 (449)
--.+...+++.+ .+.+ .|...+ ..+|.||||+.|+ .++..+.+ .+.|.+++.|++..... .+.-++.+.+.
T Consensus 134 ~q~~l~~aLg~~-~p~~-~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~ 209 (239)
T cd00808 134 KQILLYEALGWE-PPKF-AHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELI 209 (239)
T ss_pred HHHHHHHHcCCC-CCce-EeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHH
Confidence 334445666544 3445 577776 5699999999999 67777765 58999999999863222 22345555443
No 95
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.27 E-value=3.5e-06 Score=63.09 Aligned_cols=57 Identities=33% Similarity=0.514 Sum_probs=42.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 284 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 284 ~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
+|.++|+||||||.|++. |+++++.+|+...... ...+..+...++.+..+|||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~~~~-----------~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALESND-----------KEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcccCC-----------HHHHHHHHHHHHHHHhcCcCCCC
Confidence 478999999999999999 9999999999322221 23345556888889999999665
No 96
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.26 E-value=1.8e-05 Score=74.60 Aligned_cols=138 Identities=20% Similarity=0.159 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCc-cccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCccccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTY-QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN 90 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~-~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~ 90 (449)
+++.--...|.+.+.++++.||+.+ |- -.+.|++.+..++..++|+++| .+|.|
T Consensus 43 tD~~R~~~~~~~~I~~dL~wlGl~w-d~~~~~QS~r~~~y~~~~~~L~~~g--------------g~p~Y---------- 97 (230)
T cd00418 43 TDPERSRPEYVESILEDLKWLGLDW-DEGPYRQSDRFDLYRAYAEELIKKG--------------GYPLY---------- 97 (230)
T ss_pred CCCCCCChHHHHHHHHHHHHcCCCC-CCCeeehhcCHHHHHHHHHHHHHcC--------------CCccc----------
Confidence 4455556678899999999999998 54 5678899999999999999999 11111
Q ss_pred ccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH
Q 013130 91 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 170 (449)
Q Consensus 91 ~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~ 170 (449)
+|+.--. .... -++.-+=|.|++.- +.--+...
T Consensus 98 -----------------~la~vvD---------------------------D~~~--gIThViRG~D~l~s-t~~q~~l~ 130 (230)
T cd00418 98 -----------------NFVHPVD---------------------------DALM--GITHVLRGEDHLDN-TPIQDWLY 130 (230)
T ss_pred -----------------ccccccc---------------------------cccc--CCCEEEECHhhhhc-hHHHHHHH
Confidence 2211000 0001 23444456784331 11222333
Q ss_pred hhccCCCCCcEEEeeeeeee-CCccccccCCCccCHHHHHH-hcChhHHHHHHhhc
Q 013130 171 CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA 224 (449)
Q Consensus 171 ~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~ 224 (449)
.+++. +.+.+ .|...++. +|+|||||.|+ .++.++.+ .|.|++++-|+..-
T Consensus 131 ~~Lg~-~~P~~-~H~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~l 183 (230)
T cd00418 131 EALGW-EPPRF-YHFPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALI 183 (230)
T ss_pred HHcCC-CCCeE-EEeeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHc
Confidence 45544 44555 78888875 77999999998 67888765 59999999998763
No 97
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.25 E-value=1.1e-05 Score=84.33 Aligned_cols=217 Identities=17% Similarity=0.119 Sum_probs=119.3
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----C------Cc--
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S------PN-- 79 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~------~~-- 79 (449)
.+|..-...|.+.+.++++.||+.+++-..+.|+|.+...++..+|+++|.||. +||... . +.
T Consensus 42 Td~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~~~~a~~Li~~G~AY~-----c~cs~eel~~~R~~~~~~g~~ 116 (522)
T TIGR00440 42 TNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYV-----DELTPEEIREYRGTLTDPGKN 116 (522)
T ss_pred CCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHHHHHHHHHHHcCCEEe-----ecCCHHHHHHhhhhcccCCCC
Confidence 445556678999999999999999855566789999999999999999999994 455422 0 11
Q ss_pred --cccccCc-cc---ccccCCCC--------Cccccc--ccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHh
Q 013130 80 --YGRLSGQ-RL---ENNRAGER--------VAVDSR--KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAH 143 (449)
Q Consensus 80 --yg~ls~~-~l---~~~~~g~~--------~~~~~~--k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~ 143 (449)
|-.++.- .+ +.|..|.. ..++.. .-+-+|+++.+-.....+.-...| .+.|-++..|. .-..
T Consensus 117 ~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~-~iyPtYdfa~~-vdD~ 194 (522)
T TIGR00440 117 SPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKW-CIYPMYDFTHC-ISDA 194 (522)
T ss_pred CcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCe-eEEeCcCCcee-ehhc
Confidence 1112110 01 12333431 111111 111246555432211111000122 12555554441 1111
Q ss_pred hcCCCccEEeecccCcCchhHHH---HHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCc---------------cCH
Q 013130 144 YLSSKFDIHGGGIDLIFPHHENE---IAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTI 205 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~~H~~~~---~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~ 205 (449)
..| ++.-+=|.| |..+- -++...+.....+.+ .+-++++++|.||||+.+.. .|+
T Consensus 195 l~g--ITHviRg~E----~~~nt~~Y~~~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti 267 (522)
T TIGR00440 195 MEN--ITHSLCTLE----FQDNRRLYDWVLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTI 267 (522)
T ss_pred cCC--CceEeecHh----hhhcHHHHHHHHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccH
Confidence 112 222233455 33332 122222322212444 36688999999999999864 377
Q ss_pred HHHHH-hcChhHHHHHHhhcCcC-CCcccCHHHHHHHHH
Q 013130 206 RQITE-RYHPLALRHFLISAHYR-SPLNYSVLQLDSASD 242 (449)
Q Consensus 206 ~dll~-~yg~D~lR~~ll~~~~~-~d~~fs~~~l~~~~~ 242 (449)
..+.. .|.|+++|=|++..... .+...++..|.+..+
T Consensus 268 ~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r 306 (522)
T TIGR00440 268 SGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIR 306 (522)
T ss_pred HHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHH
Confidence 78776 69999999999884332 344456666665543
No 98
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.20 E-value=3e-05 Score=70.92 Aligned_cols=128 Identities=11% Similarity=0.143 Sum_probs=90.5
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHH--hcCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 013130 232 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 302 (449)
Q Consensus 232 fs~~~l~~~~~-~l~~l~~~~~~~~~--~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~ 302 (449)
||++.++...+ .+.+|||+++++.. ....+.+. ......|+|++..++.+..++.++| ++|+++.|++.
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 68889988887 88999999887743 22222111 1124578999999999999999999 89999999999
Q ss_pred HHHHHHHH-HHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 303 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 303 l~~l~~~~-N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++.++... +.|++..++ |... ++.........+...+..++.+|. |+|- .++++++.++
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l~ 141 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNLR 141 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhh
Confidence 99999865 778887543 4321 111122344456677778888887 5666 5666666554
No 99
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.14 E-value=3.9e-05 Score=72.45 Aligned_cols=169 Identities=16% Similarity=0.165 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCccccc
Q 013130 11 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN 90 (449)
Q Consensus 11 g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~ 90 (449)
.+++.-....+.+.+.++++.||+.+ |-..+.|++.+..++...+|+++|.||.. +.
T Consensus 42 DtD~~R~~~~~~~~I~~dL~wlGl~w-D~~~~QS~r~~~Y~~~~~~L~~~g~aY~~-----------~~----------- 98 (238)
T cd00807 42 DTNPEKEEEEYVDSIKEDVKWLGIKP-YKVTYASDYFDQLYEYAEQLIKKGKAYVH-----------HR----------- 98 (238)
T ss_pred CCCCcccchHHHHHHHHHHHHcCCCC-CCceecccCHHHHHHHHHHHHHcCCeecC-----------CC-----------
Confidence 34556666788999999999999998 65667889999999999999999999980 00
Q ss_pred ccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH
Q 013130 91 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 170 (449)
Q Consensus 91 ~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~ 170 (449)
.| .+|.+| |.++..|. +...+ ..++.-+=|.|++-- ..--+...
T Consensus 99 --~~------------~~~~i~------------------ptY~lA~v--VDD~~-~gIThVvRG~D~l~~-t~~Q~~l~ 142 (238)
T cd00807 99 --TG------------DKWCIY------------------PTYDFAHP--IVDSI-EGITHSLCTLEFEDR-RPSYYWLC 142 (238)
T ss_pred --CC------------CCEEEE------------------eccccceE--eeccc-cCCCeEEechhhhcC-CHHHHHHH
Confidence 00 122222 33332221 11111 023444556884432 11112333
Q ss_pred hhccCCCCCcEEEeeeeeeeCCccccccCCC------cc---------CHHHHHH-hcChhHHHHHHhh-cCcCCCcccC
Q 013130 171 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN------FF---------TIRQITE-RYHPLALRHFLIS-AHYRSPLNYS 233 (449)
Q Consensus 171 ~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN------~i---------~~~dll~-~yg~D~lR~~ll~-~~~~~d~~fs 233 (449)
.+++.++ +.+ +|.+|+..+|.||||+.+- .+ ++..+.. .|.|++++=|++. +--..+..|+
T Consensus 143 ~aLg~~~-P~~-~~~~hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~ 220 (238)
T cd00807 143 DALRLYR-PHQ-WEFSRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTID 220 (238)
T ss_pred HHcCCCC-Cce-eEEEEECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccC
Confidence 5555444 444 3557889999999999852 12 2344433 6899999999987 5667899999
Q ss_pred HHHHHHH
Q 013130 234 VLQLDSA 240 (449)
Q Consensus 234 ~~~l~~~ 240 (449)
++.|...
T Consensus 221 ~~~l~~~ 227 (238)
T cd00807 221 WDKLEAC 227 (238)
T ss_pred HHHHHHH
Confidence 9988753
No 100
>PLN02859 glutamine-tRNA ligase
Probab=98.13 E-value=2.6e-05 Score=84.53 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=119.9
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC----C------ccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----P------NYG 81 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~----~------~yg 81 (449)
.+|..-...|.+.+.++++.||+.+ +...++|+|.+.+-++..+|+++|+||. +||.... . .|-
T Consensus 306 Tdp~r~~~e~~~~I~edL~WLG~~~-d~~~~qSd~f~~~Y~~A~~Li~~G~AY~-----C~ct~eei~~~R~~~~~sp~R 379 (788)
T PLN02859 306 TNPEAEKKEYIDHIEEIVEWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWR 379 (788)
T ss_pred CCCCccchHHHHHHHHHHHHcCCCC-CCcccccHhHHHHHHHHHHHHHcCCeEe-----ccCCHHHHHHHHhhhccCCCC
Confidence 4566667789999999999999986 6677889999888889999999999994 5554321 0 011
Q ss_pred cccC---ccc-ccccCCCC--------Cccc--ccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCC
Q 013130 82 RLSG---QRL-ENNRAGER--------VAVD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 147 (449)
Q Consensus 82 ~ls~---~~l-~~~~~g~~--------~~~~--~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~ 147 (449)
..+. ..+ +++..|.. ..++ ...-+-+|+++.+-.....+.-...|= ..|-++..|. ......|
T Consensus 380 d~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~-iyPtYdFA~~-vdD~leg- 456 (788)
T PLN02859 380 DRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-IYPSYDYAHC-IVDSLEN- 456 (788)
T ss_pred CCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeE-EEeccccccc-ccccccC-
Confidence 1110 111 12222211 1111 111112455543321111111112332 2555554431 1111112
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCc---------------cCHHHHHH-h
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-R 211 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~ 211 (449)
+..-+=|.|.+- |..--.-++.|++..+ +.+ .|-+.++++|.||||+.+.. .|+..+.. .
T Consensus 457 -ITHvLRg~E~~~-~~~~y~wl~~aLg~~~-P~~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG 532 (788)
T PLN02859 457 -ITHSLCTLEFET-RRASYYWLLDSLGLYQ-PYV-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRG 532 (788)
T ss_pred -CceEeechhhhc-CCHHHHHHHHHcCCCC-CcE-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCC
Confidence 222233455222 2222223345555443 444 58888889999999999864 36666665 6
Q ss_pred cChhHHHHHHhhc-CcCCCc-ccCHHHHHH
Q 013130 212 YHPLALRHFLISA-HYRSPL-NYSVLQLDS 239 (449)
Q Consensus 212 yg~D~lR~~ll~~-~~~~d~-~fs~~~l~~ 239 (449)
|.|+++|=|++.. .-..+. .|+++.|..
T Consensus 533 ~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~ 562 (788)
T PLN02859 533 VTPTAINAFCRGIGITRSDNSLIRMDRLEH 562 (788)
T ss_pred CCHHHHHHHHHHhCCCCCCCceecHHHHHh
Confidence 9999999999884 223444 699999944
No 101
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.0012 Score=67.59 Aligned_cols=292 Identities=14% Similarity=0.118 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccccccc-cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCccccccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR 92 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~ 92 (449)
|+.|-+-=++.+.+..++|||.+ |.|+--++ .-+.+++....+.++|..-.-+|...++.+++.. -.++-+
T Consensus 226 Wqrfr~lsIe~l~~~Y~Rl~v~F-D~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~---~~~~~~---- 297 (567)
T KOG1195|consen 226 WQRFRDLSIEKLIKTYNRLNVKF-DEYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVIDLSKIDK---KAGKAV---- 297 (567)
T ss_pred HHHhhhhhHHHHHHHHHHhceee-eeccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEEecccCc---ccceEE----
Confidence 34455555677788889999999 88888775 5677888899999999777778999999887521 011000
Q ss_pred CCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCcc--EEeecccCcCchhHHHHHHH
Q 013130 93 AGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD--IHGGGIDLIFPHHENEIAQS 170 (449)
Q Consensus 93 ~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~D--ih~~GkDli~~H~~~~~a~~ 170 (449)
+ .|.+ +-+|.. +. +-.+...++-.+.+| |++...- -.-|..-.--++
T Consensus 298 ------V--~ksd--gttLYl-------tR-------------diaaal~Rl~~y~fdr~iYVvd~~-Q~~hf~~lf~il 346 (567)
T KOG1195|consen 298 ------V--QKSD--GTTLYL-------TR-------------DIAAALDRLEKYSFDRLIYVVDSQ-QKDHFCQLFEIL 346 (567)
T ss_pred ------E--EcCC--CceehH-------HH-------------HHHHHHHHHHhcCcceEEEEechH-HHHHHHHHHHHH
Confidence 0 0100 111110 01 112222222111222 3332210 001443333444
Q ss_pred hhccCCCCCcEEEeeeeeee-CCccccccCCCccCHHHHHH----------------------------hcChhHHHHHH
Q 013130 171 CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE----------------------------RYHPLALRHFL 221 (449)
Q Consensus 171 ~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~----------------------------~yg~D~lR~~l 221 (449)
++++.. |+.=. .|+.. -+.=||...|+++.+.|+++ ..|.-++..=.
T Consensus 347 k~mg~~-~a~~~---qHV~~G~v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d 422 (567)
T KOG1195|consen 347 KKMGFD-WAKKL---QHVNFGRVQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQD 422 (567)
T ss_pred HHhCch-hhhhc---ceecccccccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHH
Confidence 555443 22211 23332 23458888888887777776 34555666555
Q ss_pred hhcCcCCCcccCHHHHHHHHH-H---HHHHHHHHHHHHHhcCCcccCC--------CCCCCChhHHHHHHHHHHHHHHHH
Q 013130 222 ISAHYRSPLNYSVLQLDSASD-A---VFYIYQTLQDCEVALSPFQEHG--------KTARINPAAEDCINKLRDEFHARM 289 (449)
Q Consensus 222 l~~~~~~d~~fs~~~l~~~~~-~---l~~l~~~~~~~~~~~~~~~~~~--------~~~~~d~~l~~~l~~~~~~v~~a~ 289 (449)
+.+.-.++..|+|+.+-.... + +.---.|++.+...++...... ...+.-..+...+..+.+-+..+|
T Consensus 423 ~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~ 502 (567)
T KOG1195|consen 423 FKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM 502 (567)
T ss_pred HHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH
Confidence 555555677777777655431 1 1111234544444443322110 001112345666778888999999
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh---hhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 290 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ---QLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 290 ~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~---~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
++++....+.. ++.++.+++..+..... + ... .-++..++.++..+|.+.+++|||.|-
T Consensus 503 -e~lE~~~lV~Y-L~~La~a~s~~yk~l~V-~-d~~~eia~aRL~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 503 -EQLEPCTLVTY-LFKLAHAVSSAYKILWV-K-DSPMEIALARLLLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred -HhhcchhHHHH-HHHHHHHHHhHHhheee-c-CCcHHHHHHHHHHHHHHHHHHHhHHHHhCCCcc
Confidence 99999999999 99999999988765432 1 111 123667788999999999999999885
No 102
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.5e-05 Score=79.94 Aligned_cols=206 Identities=20% Similarity=0.230 Sum_probs=114.7
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCc-cccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----C---------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTY-QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S--------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~-~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~--------- 77 (449)
++|.--...|.+.+.++|+.||+.. |- ..+.|++.+.-.+++.+|+++|.|| ++||+.. +
T Consensus 51 TD~~R~~~e~~~~I~~~L~WLGl~w-de~~~~QS~r~~~Y~~~~~~Li~~G~AY-----~c~ct~eele~~R~~~~~~g~ 124 (472)
T COG0008 51 TDPERETPEAEDAILEDLEWLGLDW-DEGPYYQSERFDIYYEYAEKLIEKGKAY-----VCYCTPEELEEMRELRGALGE 124 (472)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC-CCceeehhhhHHHHHHHHHHHHHCCCeE-----EecCCHHHHHHHHHHHhhcCC
Confidence 4455556678899999999999998 65 6889999999999999999999999 5666542 1
Q ss_pred -C-ccccccCcccc---cccC---CC----CCcccccccCc--cchhccccccCCCCcccC-CCC------CCCCCchhh
Q 013130 78 -P-NYGRLSGQRLE---NNRA---GE----RVAVDSRKRNP--ADFALWKAAKAGEPSWDS-PWG------PGRPGWHIE 136 (449)
Q Consensus 78 -~-~yg~ls~~~l~---~~~~---g~----~~~~~~~k~~~--~Df~lwk~~~~~~~~w~s-~WG------~grPgWh~e 136 (449)
| .|..- -.+|. .+.. |. |+.++....++ .|.+ .|++.++. -++ .|.|-+|..
T Consensus 125 ~p~~y~r~-~~~L~~~~~~~~~~~~~~~viR~k~~~~~~~~~~~D~v------~g~i~~~~~~~~dv~~r~dg~ptY~fa 197 (472)
T COG0008 125 PPPSYDRD-ERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLV------RGRIVFAPKHPDFVILRYDGYPTYNFA 197 (472)
T ss_pred CCCCCCch-hhccchHHHHhhcccCCCeEEEEeCCCCCCCCccccce------eeeEecCccCCcceeecCCCCccccee
Confidence 1 22110 01111 1111 11 01111000111 1211 12222221 222 133444433
Q ss_pred hHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeeee-CCccccccCCCccCHHHH-HHh
Q 013130 137 CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQI-TER 211 (449)
Q Consensus 137 ~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dl-l~~ 211 (449)
|. .-....| +.--+=|.| |..|.+-|. .+++-++ +.+ .|.+.++. +|+|||||.| .+.+.++ ...
T Consensus 198 vv-vDD~~mg--ITHviRG~d----~~~nt~~q~~l~~~lg~~~-P~~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G 267 (472)
T COG0008 198 VV-VDDHLMG--ITHVLRGED----HLDNTPRQIWLYEALGWPP-PVY-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEG 267 (472)
T ss_pred ee-echhhcC--CceEEechh----hccCCHHHHHHHHHcCCCC-CcE-EEeeeeecCCCCeecCccC-ccccchhhhcC
Confidence 31 1111222 333344688 555555444 5554444 555 79999987 5679999999 6776654 457
Q ss_pred cChhHHHHHHhh-c-Cc--CCCcccCHHHHHHH
Q 013130 212 YHPLALRHFLIS-A-HY--RSPLNYSVLQLDSA 240 (449)
Q Consensus 212 yg~D~lR~~ll~-~-~~--~~d~~fs~~~l~~~ 240 (449)
|.+.+++-|+.. + .+ ...-.|+.+.+...
T Consensus 268 ~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~ 300 (472)
T COG0008 268 WLPPALPNLLALLGRGYPPEAIEIFSLEEGIKW 300 (472)
T ss_pred CCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhh
Confidence 888888877743 2 22 44455555555443
No 103
>PLN02627 glutamyl-tRNA synthetase
Probab=97.97 E-value=6.7e-05 Score=78.57 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=118.5
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCcc---------ccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-----
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~---------~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~----- 77 (449)
+++.-....+.+.+.++|+.|||.+ |-- .+.|++.+.-.+++++|++.|+|| .|||....
T Consensus 87 TD~~R~~~e~~~~I~~~L~WLGl~w-Degp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCs~eel~~~r 160 (535)
T PLN02627 87 TDLARSTKESEEAVLRDLKWLGLDW-DEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVY-----PCFCTDEELEAMK 160 (535)
T ss_pred CCCCCCChHHHHHHHHHHHHcCCCC-CcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCee-----eccCChHHHHHHH
Confidence 3445556788999999999999998 533 367889999999999999999999 45655321
Q ss_pred ---------Ccccc----ccCccc-ccccCCCCCcc------------c--------ccccCccchhccccccCCCCccc
Q 013130 78 ---------PNYGR----LSGQRL-ENNRAGERVAV------------D--------SRKRNPADFALWKAAKAGEPSWD 123 (449)
Q Consensus 78 ---------~~yg~----ls~~~l-~~~~~g~~~~~------------~--------~~k~~~~Df~lwk~~~~~~~~w~ 123 (449)
+.|.. ++.... +.+..|....+ + ..-....||+++|.
T Consensus 161 ~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~--------- 231 (535)
T PLN02627 161 EEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRS--------- 231 (535)
T ss_pred HHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEec---------
Confidence 11211 111000 00011110000 0 00001235555443
Q ss_pred CCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeeee-CCccccccC
Q 013130 124 SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSL 199 (449)
Q Consensus 124 s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSl 199 (449)
.|.|.+|..|+.- .... .++.-+=|.| |..+.+-|. .|++-.+ +. |.|...++. +|+||||+.
T Consensus 232 ----DG~PtY~fA~vVD-D~~m--gITHViRG~D----~l~nTpkQi~ly~aLg~~~-P~-f~Hlpli~~~~g~KLSKR~ 298 (535)
T PLN02627 232 ----NGQPVYNFCVAVD-DATM--GITHVIRAEE----HLPNTLRQALIYKALGFPM-PR-FAHVSLILAPDRSKLSKRH 298 (535)
T ss_pred ----CCCccccccceec-cccc--CCcEEEechh----hhcChHHHHHHHHHcCCCC-Ce-EEEccceeCCCCCcccccc
Confidence 2456666655321 1111 2444455788 666665554 5554444 44 489999875 889999998
Q ss_pred CCccCHHHHHH-hcChhHHHHHHhhc--CcC-CCcccCHHHHHHH
Q 013130 200 GNFFTIRQITE-RYHPLALRHFLISA--HYR-SPLNYSVLQLDSA 240 (449)
Q Consensus 200 GN~i~~~dll~-~yg~D~lR~~ll~~--~~~-~d~~fs~~~l~~~ 240 (449)
|- +.+.++.+ .|.|++++=|++.- ++. .+--|+.+.+.+.
T Consensus 299 ~~-~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 299 GA-TSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEK 342 (535)
T ss_pred CC-ccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHHh
Confidence 65 57777766 69999999888763 322 2345777776654
No 104
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=97.93 E-value=2.6e-05 Score=56.74 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=41.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 013130 285 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 349 (449)
Q Consensus 285 v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi 349 (449)
|.++|+||||||.|+.. ++++++.+|.+++.... ...+..+...+..++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~~----------~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAVD----------AEELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhcccC----------HHHHHHHHHHHHHHHhccCC
Confidence 67899999999999999 99999999998853210 11234455667777888886
No 105
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.89 E-value=8.7e-05 Score=72.72 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC------------Cc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------PN 79 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~------------~~ 79 (449)
+++.--...|.+.+.++|+.|||.++.--.+.|++.+.-.++.++|+++|.||. +||+.+. +.
T Consensus 47 tD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~-----C~Ctr~el~~~~~~~~~~~~~ 121 (299)
T PRK05710 47 IDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYP-----CFCSRKEIAAAAPAPPDGGGI 121 (299)
T ss_pred CCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhhhccCCCCc
Confidence 445555677899999999999999832355688999999999999999999994 3443221 01
Q ss_pred cc----cccCcc----------------cccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHH
Q 013130 80 YG----RLSGQR----------------LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSA 139 (449)
Q Consensus 80 yg----~ls~~~----------------l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~ 139 (449)
|. .++.-. ..|++.|.- .. .......||++++. .|.|.+|..|+.
T Consensus 122 y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~-~~-~~~~~~~D~Vi~R~-------------dg~ptY~lA~vV 186 (299)
T PRK05710 122 YPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQ-HQ-DLALAVGDFVLRRA-------------DGLFAYQLAVVV 186 (299)
T ss_pred CCCccccCCccccCCceEEEEcCCCceEEEEecceeE-ee-CCCCCCCCEEEEec-------------CCCccccchhHH
Confidence 11 111000 000000100 00 00112346666653 245666665532
Q ss_pred HHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChh
Q 013130 140 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPL 215 (449)
Q Consensus 140 ~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D 215 (449)
- ....| ++.-+=|.| |..+.+.|. .+++.+ .+.+ .|+..++ .+|+||||+.|-. .+.+ ..|.|+
T Consensus 187 D-D~~~g--IThVvRG~D----~l~~t~~Q~~l~~aLg~~-~P~y-~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~ 254 (299)
T PRK05710 187 D-DALQG--VTHVVRGAD----LLDSTPRQIYLQQLLGLP-TPRY-LHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV 254 (299)
T ss_pred h-cccCC--CCEEEeChh----hhhcCHHHHHHHHHcCCC-CCeE-EEeecccCCCCCcccccCCcc-chhh--cCcCHH
Confidence 1 11223 444455688 444444443 455444 4545 7988885 6999999998764 4444 678888
Q ss_pred HHHHHHhh
Q 013130 216 ALRHFLIS 223 (449)
Q Consensus 216 ~lR~~ll~ 223 (449)
+..|+..
T Consensus 255 -l~~~l~~ 261 (299)
T PRK05710 255 -LAAALRF 261 (299)
T ss_pred -HHHHHHH
Confidence 6666654
No 106
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.88 E-value=4.1e-05 Score=74.12 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEe
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 65 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~ 65 (449)
++.-....+.+.+.++++.|||.++.-..+.|++.+.-.+.+++|+++|.||.
T Consensus 43 D~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 43 DPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 34445567889999999999999832334889999999999999999999994
No 107
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=97.85 E-value=5e-05 Score=66.98 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=69.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-HHH-HHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHh
Q 013130 271 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKF-INSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRIL 347 (449)
Q Consensus 271 d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l-~~~-~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~il 347 (449)
|+|+++.++.+.+++.++| ++|+++.|+.. ++.+ ... +|.|++..+||...+.. ..+. ....+...++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 4789999999999999999 89999999999 9997 444 49999999999644322 1223 5677788888888888
Q ss_pred c-CCCCCChhHHHHHH
Q 013130 348 G-LLPPGAYSEVLQQL 362 (449)
Q Consensus 348 g-i~~~~~~~~~~~~~ 362 (449)
. |+|. .++++++.+
T Consensus 78 ~P~~P~-~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRL 92 (153)
T ss_dssp TTTSHH-HHHHHHHHC
T ss_pred CCCCcH-HHHHHHHHh
Confidence 7 6776 778888655
No 108
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.014 Score=58.66 Aligned_cols=292 Identities=11% Similarity=0.065 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCcccc-ccccHHHHHHHHHHHHHcCCeEeecC-cEEEeCCCCCccccccCcccccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPR-VSDHMEQIKDMITQIINNDCAYVVEG-DVFFAVEKSPNYGRLSGQRLENN 91 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~r-tt~h~~~v~~~i~~L~~~G~aY~~~g-~~yf~~~~~~~yg~ls~~~l~~~ 91 (449)
|.-+|+--.++|....++|.|+- --| -|-+-+.|.++++.|..+|+.-+.+| .+.|-..+- ..|.
T Consensus 304 W~~ICdvSr~ef~kvY~rLdi~l---~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~--------IPLt-- 370 (656)
T KOG4426|consen 304 WALICDVSRKEFQKVYNRLDISL---KERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCD--------IPLT-- 370 (656)
T ss_pred HHHHHHhhHHHHHHHHHHhcchH---hhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCC--------cceE--
Confidence 56789999999999999999975 223 34478899999999999999998876 344433210 0010
Q ss_pred cCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCc--cEEeecccC-cCchhHHHHH
Q 013130 92 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKF--DIHGGGIDL-IFPHHENEIA 168 (449)
Q Consensus 92 ~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~--Dih~~GkDl-i~~H~~~~~a 168 (449)
+-|. +|-.+++++ ..+|+..+...... .|++.-.-. ..|..++--|
T Consensus 371 -------------------vVKS--DGGftYdts----------DlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAa 419 (656)
T KOG4426|consen 371 -------------------VVKS--DGGFTYDTS----------DLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAA 419 (656)
T ss_pred -------------------EEec--CCCcccccc----------hHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHH
Confidence 0111 121222221 12333322221111 233311111 1112333334
Q ss_pred HHhhccCCCCCcEEEeeeeeee---CCccccccCCCccCHHHHHHh-----------------cCh------------hH
Q 013130 169 QSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIRQITER-----------------YHP------------LA 216 (449)
Q Consensus 169 ~~~a~~~~~~~~~~~h~g~l~~---~G~KMSKSlGN~i~~~dll~~-----------------yg~------------D~ 216 (449)
+-.+...+.++++ -|.||=.+ +|+|+-...|.+|-+.|+++. ++| -.
T Consensus 420 r~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGc 498 (656)
T KOG4426|consen 420 RKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGC 498 (656)
T ss_pred HHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcc
Confidence 4344445667777 68888665 788898889999999998862 111 12
Q ss_pred HHHHHhhcCcCCCcccCHHHHHHHH-HHH-------HHHHHHHHH-------HHHhcCCcccCCCCCCCChhHHHHHHHH
Q 013130 217 LRHFLISAHYRSPLNYSVLQLDSAS-DAV-------FYIYQTLQD-------CEVALSPFQEHGKTARINPAAEDCINKL 281 (449)
Q Consensus 217 lR~~ll~~~~~~d~~fs~~~l~~~~-~~l-------~~l~~~~~~-------~~~~~~~~~~~~~~~~~d~~l~~~l~~~ 281 (449)
+.|.=|+.+--+|.-||.+.|.+-. |+- .++.+.++. +...+..........+.+..+-..+-.+
T Consensus 499 iKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf 578 (656)
T KOG4426|consen 499 IKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKF 578 (656)
T ss_pred hhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhH
Confidence 5555566666778888888776543 321 222222111 0000000000000011122344556677
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh------hhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 282 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ------QLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 282 ~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~------~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
.+.+..++ +++=++..+.. ++++......|++++---...+. +..+...+.++..+++..+.+|||.|-
T Consensus 579 ~e~v~~~~-~~L~lh~lC~y-~y~l~t~Ft~FY~~Cyv~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV 653 (656)
T KOG4426|consen 579 AEIVEKAL-DSLFLHVLCDY-LYELATLFTEFYDSCYVIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPV 653 (656)
T ss_pred HHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhhccEEeccccccccccchhHHHHHHHHHHHHHHHhhHhhCCccc
Confidence 78888888 89999999999 99999998888876643211111 134566778888999999999999764
No 109
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.50 E-value=0.001 Score=66.20 Aligned_cols=185 Identities=20% Similarity=0.230 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC---------------
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------- 77 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~--------------- 77 (449)
++.--...+.+.+.++|+.|||.++.-..+.|++.+.-.+++++|+++|.|| .+||..+-
T Consensus 44 D~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~aY-----~C~Csr~~l~~~r~~~~~~~~~~ 118 (314)
T PF00749_consen 44 DPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKAY-----PCFCSREELKAAREAQEGAGCPH 118 (314)
T ss_dssp STTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTSEE-----EEESEHHHHHHHHHHHHHTTSTT
T ss_pred ccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCCc-----cccCCHHHHHHHHHHhhccCCCc
Confidence 3444456788999999999999984366778899999999999999999999 56665321
Q ss_pred -CccccccCccc--ccc----cCCCC----Cccc----------------ccccCccchhccccccCCCCcccCCCCCCC
Q 013130 78 -PNYGRLSGQRL--ENN----RAGER----VAVD----------------SRKRNPADFALWKAAKAGEPSWDSPWGPGR 130 (449)
Q Consensus 78 -~~yg~ls~~~l--~~~----~~g~~----~~~~----------------~~k~~~~Df~lwk~~~~~~~~w~s~WG~gr 130 (449)
+.|..-. +.+ +++ ..|.. +.++ .......||++++. .|.
T Consensus 119 ~~~y~~~c-~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~-------------dg~ 184 (314)
T PF00749_consen 119 RPRYPGTC-RELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRS-------------DGY 184 (314)
T ss_dssp TTSBHHHH-HCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEEST-------------TSE
T ss_pred cccchhhh-hhhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccCCchhcccc-------------ccC
Confidence 1121100 001 000 01110 0000 00011235555543 245
Q ss_pred CCchhhhHHHHHhh-cCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCcc-CHHH
Q 013130 131 PGWHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF-TIRQ 207 (449)
Q Consensus 131 PgWh~e~~~~~~~~-~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i-~~~d 207 (449)
|.+|..|+ +... .| ++.-+=|.|++.. ...-+.+..+++.++ +.+ .|+..++ .+|+|+||+.+-.. ....
T Consensus 185 ptY~fA~v--VDD~~~g--ITHViRG~D~l~~-t~~Q~~L~~~Lg~~~-P~~-~H~pl~l~~~g~kLSKR~~~~~i~~~~ 257 (314)
T PF00749_consen 185 PTYHFAVV--VDDHLMG--ITHVIRGEDLLSS-TPRQILLYEALGWPP-PPY-AHLPLILNEDGKKLSKRKGAKSIELGD 257 (314)
T ss_dssp B-HHHHHH--HHHHHTT---SEEEEEGGGTTC-HHHHHHHHHHCTSSS--EE-EEEEEEEETTSSBSSTTCSHHBHHHHH
T ss_pred ccccccee--ecccccc--cCeEEEccccccc-cHHHHHHHHHhCCCC-cce-EeeeeeecCCCcEechhhccccccccc
Confidence 55666543 2222 33 4445557996552 333334446665544 434 6765554 58999999998753 3444
Q ss_pred HHH-hcChhHHHHHHhh
Q 013130 208 ITE-RYHPLALRHFLIS 223 (449)
Q Consensus 208 ll~-~yg~D~lR~~ll~ 223 (449)
+.+ .+.+.++--||..
T Consensus 258 ~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 258 YREWGDPPEATLNYLAR 274 (314)
T ss_dssp HHHTT-THHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHH
Confidence 443 3566655555544
No 110
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00056 Score=75.14 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=65.9
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCc--cccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTY--QPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~--~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
++|++.|.+.|.+|..+++.+++.|++.|++||.++ |. ..-||+ +-..+|-+|.+|.++|+||.++..|-||..+
T Consensus 85 lPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~si-DW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d 163 (814)
T COG0495 85 LPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSI-DWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVD 163 (814)
T ss_pred chHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCcc-ccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCc
Confidence 578999999999999999999999999999999998 54 233554 8899999999999999999999888887643
No 111
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.11 E-value=0.0026 Score=50.09 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HH
Q 013130 235 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 312 (449)
Q Consensus 235 ~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~-N~ 312 (449)
+.|.++.+.+.+|++.+..+. . . .+..+.++|.++|+||||+|.|+.. |+++++.+ |.
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~------~------~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD------G------P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc------c------c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 568888888888887765431 0 0 1234668999999999999999999 99999876 53
No 112
>PLN02882 aminoacyl-tRNA ligase
Probab=96.86 E-value=0.0029 Score=73.15 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHhhCC--CCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQ--CLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~--I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+.+++.+|.+.+++.+++|| |.+ +.+-+|++ |++.++.++.+|.++|++|.+..-++||+.+
T Consensus 119 c~~~~~~~~~~~~~~~~rlG~~~D~-~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~ 184 (1159)
T PLN02882 119 CRSIVTRYSKEWEKTVTRTGRWIDF-ENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTAC 184 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEC-CCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCC
Confidence 55799999999999999999 655 55666665 9999999999999999999999999999765
No 113
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0093 Score=60.08 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccc---------cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC-----------
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSD---------HMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------- 76 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~---------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----------- 76 (449)
++.--++.+.++++.+||.+ |-=|++.- -.+--...++.|++.|+|| .+||+..
T Consensus 80 ~v~gs~e~i~~~L~w~nl~~-DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AY-----rCFCs~~rL~~lrk~A~k 153 (524)
T KOG1149|consen 80 LIRGSEEAIYEDLKWANLDW-DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAY-----RCFCSEERLDLLRKSALK 153 (524)
T ss_pred cccchHHHHHHHHHhcCCCc-ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCee-----EeccCHHHHHHHHHhhhc
Confidence 44445678899999999997 87887652 2333568899999999999 4677642
Q ss_pred ---CCccc----cccCcccccc-cCCCCCccc--ccccC------------------ccchhccccccCCCCcccCCCCC
Q 013130 77 ---SPNYG----RLSGQRLENN-RAGERVAVD--SRKRN------------------PADFALWKAAKAGEPSWDSPWGP 128 (449)
Q Consensus 77 ---~~~yg----~ls~~~l~~~-~~g~~~~~~--~~k~~------------------~~Df~lwk~~~~~~~~w~s~WG~ 128 (449)
-|.|. .|+..++..+ ..|.+..++ ..+.+ ..||++-|. .
T Consensus 154 ~~~~p~YD~kca~ls~~ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKS-------------D 220 (524)
T KOG1149|consen 154 KHEIPRYDRKCANLSDAEIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKS-------------D 220 (524)
T ss_pred cCCCCcccchhcccCHHHHHHHHhcCCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcEEEec-------------C
Confidence 12343 2332222211 122221110 01111 223333332 3
Q ss_pred CCCCchhhhHHHHHhhcCCCccEEeecccCcCc---hhHHH---HHHHhhccCCCCCcEEEeeeeee-eCCccccccCCC
Q 013130 129 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---HHENE---IAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 201 (449)
Q Consensus 129 grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~---H~~~~---~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 201 (449)
|.|.+|..| .+|=|.+|+-++-= |..+. +..-.|+ +-+|+++ .|--.++ .+|.|.||..|.
T Consensus 221 gfPTYHfAn----------VVDDh~M~IsHViRGeEWlpST~KH~lLYkAf-gW~pPkF-aHlpLl~n~d~sKLSKRqgD 288 (524)
T KOG1149|consen 221 GFPTYHFAN----------VVDDHLMGISHVIRGEEWLPSTLKHILLYKAF-GWQPPKF-AHLPLLLNPDGSKLSKRQGD 288 (524)
T ss_pred CCcceeeee----------eecchhcchhheeecchhccccHHHHHHHHHh-CCCCCce-eeeeeeecCCcchhhhhcCc
Confidence 677788776 34555555543221 22222 2222444 5455555 5655554 599999999997
Q ss_pred ccCHHHHHH-hcChhHHHHHHhh-c--CcCCCcccCHHHHHHHH
Q 013130 202 FFTIRQITE-RYHPLALRHFLIS-A--HYRSPLNYSVLQLDSAS 241 (449)
Q Consensus 202 ~i~~~dll~-~yg~D~lR~~ll~-~--~~~~d~~fs~~~l~~~~ 241 (449)
+.+..+.+ .|=|+++==|+.. + ....+--||.+.|.+.-
T Consensus 289 -~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF 331 (524)
T KOG1149|consen 289 -ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQF 331 (524)
T ss_pred -chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHh
Confidence 44555544 5778887666655 3 44556678888887753
No 114
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=96.60 E-value=0.011 Score=49.82 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh-h-hhhHHHHHHHHHHHHHHHHHhc
Q 013130 271 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-Q-LSLIESLRKIENEVKEVLRILG 348 (449)
Q Consensus 271 d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~-~-~~~~~~l~~~~~~l~~~l~ilg 348 (449)
+..+...+..+...+..++ .+++++.++.. +.+++..+|+|++....+..... . ..+...+.++..++..++.+||
T Consensus 35 e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~y-L~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llg 112 (119)
T PF05746_consen 35 ERELLKQLARFPDVLEKAA-KDLEPHKLCDY-LYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLG 112 (119)
T ss_dssp HHHHHHHHCTHHHHHHHHH-HHT-CHHHHHH-HHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556777778888899999 89999999999 99999999999998876542221 1 3467789999999999999999
Q ss_pred CCCC
Q 013130 349 LLPP 352 (449)
Q Consensus 349 i~~~ 352 (449)
|.|.
T Consensus 113 i~~~ 116 (119)
T PF05746_consen 113 IEPL 116 (119)
T ss_dssp ----
T ss_pred CCcc
Confidence 9764
No 115
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.50 E-value=0.0073 Score=68.33 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=61.7
Q ss_pred ChhHHHHHHc-CCC------h----------HHHHHHHHHHHHHHHhhCCCCCC-Cccccccc--cHHHHHHHHHHHHHc
Q 013130 1 MQIIRRANDL-GEN------P----------LSLSNRYCQEYLVDMADLQCLPP-TYQPRVSD--HMEQIKDMITQIINN 60 (449)
Q Consensus 1 ~KI~~~A~~~-g~~------~----------~e~~~~~~~~f~~~~~~L~I~~~-d~~~rtt~--h~~~v~~~i~~L~~~ 60 (449)
++|+.+|.+. |++ + .+++.+|.+.+++.|++||+..+ +..-.|++ +...++.+|.+|+++
T Consensus 87 lpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~ 166 (861)
T TIGR00392 87 LPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEK 166 (861)
T ss_pred cHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHC
Confidence 4677777655 665 4 48999999999999999999762 23334444 889999999999999
Q ss_pred CCeEeecCcEEEeCCC
Q 013130 61 DCAYVVEGDVFFAVEK 76 (449)
Q Consensus 61 G~aY~~~g~~yf~~~~ 76 (449)
|+||.+..-|+||+.+
T Consensus 167 gliyr~~~~v~w~p~~ 182 (861)
T TIGR00392 167 GLLYRGLKPVYWSPRC 182 (861)
T ss_pred CCEeecceeeecCCCc
Confidence 9999999999999865
No 116
>PLN02843 isoleucyl-tRNA synthetase
Probab=96.39 E-value=0.01 Score=67.71 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=53.8
Q ss_pred cCCChHHH-------HHHHHHHHHHHHhhCCCCCC-Cccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 10 LGENPLSL-------SNRYCQEYLVDMADLQCLPP-TYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 10 ~g~~~~e~-------~~~~~~~f~~~~~~L~I~~~-d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
.+++|.++ +++|...+++.|++||+..+ +..-+|++ |...++..|.+|+++|+||.+..-|++|+++
T Consensus 99 ~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~ 175 (974)
T PLN02843 99 KELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSS 175 (974)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCC
Confidence 45677766 67777777999999999541 34445554 8889999999999999999999999999875
No 117
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.36 E-value=0.0056 Score=59.54 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=43.1
Q ss_pred ccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 149 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 149 ~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
.|+..||.|.. +|++.-.=...-.+..++ +-+++.++. .+|+|||||.+|.++ ..+ .=+|+.++=++.+
T Consensus 152 ~~l~~~G~DQ~-~~i~~~rd~a~r~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~~ 221 (269)
T cd00805 152 VDLQLGGSDQR-GNITLGRDLIRKLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPV--LDSPYDVYQKIRN 221 (269)
T ss_pred CCeeEecHHHH-HHHHHHHHHHHHhCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccC--CCCHHHHHHHHHc
Confidence 48999999987 566554433333333322 225667765 699999999999883 111 1256666555554
No 118
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.011 Score=60.49 Aligned_cols=51 Identities=49% Similarity=0.681 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCChhHhHHHHHHcHhCCCEEEecCCCeEEEeCCcc
Q 013130 375 EDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 425 (449)
Q Consensus 375 ~~i~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~i~D~~~gt~W~~~~~~ 425 (449)
+++.+..++|..++++|+++++|++|++++..||..+|.+.++.|+..-++
T Consensus 526 e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 526 EELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 446677888999999999999999999999999999999999999885443
No 119
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.19 E-value=0.013 Score=57.11 Aligned_cols=74 Identities=19% Similarity=0.039 Sum_probs=42.1
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhcC
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 225 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~ 225 (449)
..++..||.|... |++.-.=...-+++.+.+.. +++-.++ .+|.|||||.||.+....+.+ +|+.++=+++++.
T Consensus 153 ~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~p~~-l~~p~l~~l~G~KMSKS~~~~i~l~~~~d--sp~~i~~ki~~a~ 227 (273)
T cd00395 153 GCDIQPGGSDQWG-NITLGRELARRFNGFTIAEG-LTIPLVTKLDGPKFGKSESGPKWLDTEKT--SPYEFYQFWINAV 227 (273)
T ss_pred CCcEEEecHHHHH-HHHHHHHHHHHhCCCCCCeE-EeeccccCCCCCcCCCCCCCCccccccCC--CHHHHHHHHHccc
Confidence 4599999999765 55443333333333222333 3334554 599999999999875322211 4555555554433
No 120
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=96.15 E-value=0.015 Score=58.16 Aligned_cols=70 Identities=19% Similarity=0.086 Sum_probs=43.5
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhcc---C--CCCCcEEEeeeeee----eCCccccccCCC-ccCHHHHHHhcChhH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAAC---Q--DSNVSYWMHNGHVT----NNNEKMSKSLGN-FFTIRQITERYHPLA 216 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~---~--~~~~~~~~h~g~l~----~~G~KMSKSlGN-~i~~~dll~~yg~D~ 216 (449)
...|+..+|.|.. +|++.-.-...-++ + -+-+.. +|+.++- .+|+|||||.+| .|.+.| +++.
T Consensus 138 ~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~~-l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-----~~e~ 210 (328)
T TIGR00233 138 YQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPES-LISKFFPRLMGLSGKKMSKSDPNSAIFLTD-----TPKQ 210 (328)
T ss_pred cCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCChh-hhccccCCCCCCCCCcCCCCCCCCeEeecC-----CHHH
Confidence 3579999999985 47776555444443 1 112223 3444421 356899999997 887665 5666
Q ss_pred HHHHHhh
Q 013130 217 LRHFLIS 223 (449)
Q Consensus 217 lR~~ll~ 223 (449)
++=-+.+
T Consensus 211 I~~KI~~ 217 (328)
T TIGR00233 211 IKKKIRK 217 (328)
T ss_pred HHHHHHh
Confidence 6655554
No 121
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.13 E-value=0.0061 Score=62.76 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=46.5
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeee-eeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
...|+..||.|..+ |+..-+-...-.+..++ -. +++-.+ ..+|.|||||.||.|.+.| +..+|..++=++++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~-~~-lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ-FG-LTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc-eE-eccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 36899999999765 44443333333333332 22 333344 3589999999999998877 344577777666653
No 122
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.05 E-value=0.0062 Score=62.70 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
...||.+||.|... |+..-.=...-++..+.. . ++.-.|+ .+|+|||||.||.|.+.| +..+|..++=++++.
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~-~-l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF-G-LTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE-E-EecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 46899999999885 665433332233333221 1 3333333 589999999999998876 445677777777653
No 123
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=96.02 E-value=0.011 Score=68.39 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHhhCC--CCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQ--CLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~--I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+.+++.+|...+++.+++|| |.+ +.+-+|.+ |++.++.+|.+|.++|++|.+..-|+||+.+
T Consensus 183 c~~~~~~~~~~~~~~~~rlG~~iDw-~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c 248 (1205)
T PTZ00427 183 CRGIVLKYSNEWVKTVERIGRWIDF-KNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKC 248 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHhCcEEec-CCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCC
Confidence 47899999999999999999 666 55666665 9999999999999999999999999999765
No 124
>PLN02381 valyl-tRNA synthetase
Probab=95.97 E-value=0.016 Score=66.56 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCc-ccc-cc--ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 16 SLSNRYCQEYLVDMADLQCLPPTY-QPR-VS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 16 e~~~~~~~~f~~~~~~L~I~~~d~-~~r-tt--~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+++++|...+++.|++||+.. |+ -.+ |+ +|...|+.+|.+|+++|+||.+..-|++|+.+
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~-Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~ 274 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASL-DWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTL 274 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchh-ccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCC
Confidence 788999999999999999997 52 111 33 48999999999999999999999999998754
No 125
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=95.55 E-value=0.027 Score=63.86 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCcc--cccc--ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQ--PRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~--~rtt--~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+|.+++++|...++++|++||+.. |+- -.|+ ++...++..|.+|.++|++|.+..-|.||+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~lG~~~-DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~ 139 (897)
T PRK12300 73 DPEYIVEYFSEEAKEDMKRIGYSI-DWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPND 139 (897)
T ss_pred CHHHHHHHhHHHHHHHHHHhCcEE-eCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCC
Confidence 578999999999999999999987 531 2244 38899999999999999999998888888765
No 126
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.51 E-value=0.11 Score=53.35 Aligned_cols=71 Identities=18% Similarity=0.033 Sum_probs=41.3
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhcc---C-C---CCCcEEE-eeeeee-eCCccccccCCCccCHHHHHHhcChhHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAAC---Q-D---SNVSYWM-HNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLAL 217 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~---~-~---~~~~~~~-h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~l 217 (449)
+..|+-.+|.|... |++.-.-...-++ + . .|..++- |+..|. .+|+|||||.+|.|.+.| +++.+
T Consensus 147 y~ad~VPVG~DQ~q-HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I 220 (431)
T PRK12284 147 FNAHKVPVGRDQIQ-HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA-----PREEL 220 (431)
T ss_pred cCCCEEEEcchhHH-HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC-----CHHHH
Confidence 35688999999876 7765443332221 1 1 1222211 222232 478999999999996654 55556
Q ss_pred HHHHhh
Q 013130 218 RHFLIS 223 (449)
Q Consensus 218 R~~ll~ 223 (449)
|=-+.+
T Consensus 221 ~kKI~~ 226 (431)
T PRK12284 221 KKAIFS 226 (431)
T ss_pred HHHHhc
Confidence 555544
No 127
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=95.37 E-value=0.049 Score=62.23 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCc--cccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 15 LSLSNRYCQEYLVDMADLQCLPPTY--QPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 15 ~e~~~~~~~~f~~~~~~L~I~~~d~--~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
.++|++|.+.+++.|++||+.. |+ .-.|.+ +...++..|.+|.++|+||.+..-|++|+.+
T Consensus 135 ~~~a~~~i~~~~~~~~rlG~~~-Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~ 199 (961)
T PRK13804 135 REYALSWIDVQREEFKRLGVLG-DWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVE 199 (961)
T ss_pred HHHHHHHHHHHHHHHHHhCcee-cCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCC
Confidence 4588899999999999999986 42 223333 7889999999999999999999999998764
No 128
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=95.11 E-value=0.015 Score=58.10 Aligned_cols=59 Identities=24% Similarity=0.165 Sum_probs=36.0
Q ss_pred CccEEeecccCcCchhHHHHHHHhhcc---CC--CCCcEEE--eeeeee-eCCccccccCCCccCHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQ 207 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~---~~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~d 207 (449)
..|+-.+|.|... |++.-.-...-++ +. +.+...+ |+-.+. .+|.|||||.+|.|.+.|
T Consensus 149 ~~d~VpvG~DQ~q-hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 149 QATHVPVGKDQIQ-HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred cCCEEEeccccHH-HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCcccccC
Confidence 5689999999765 7776443333222 11 2222322 334443 588999999999885543
No 129
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=95.09 E-value=0.22 Score=41.90 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCch-h-hhhhhHHHHHHHHHHHHHHHHHhc
Q 013130 271 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILG 348 (449)
Q Consensus 271 d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~-~-~~~~~~~~l~~~~~~l~~~l~ilg 348 (449)
+..+...+..+.+.+..++ .+.+++.++.. +.++...+|.|++........ . -...+...+.++...+..++++||
T Consensus 38 E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llg 115 (122)
T smart00836 38 ELALLRLLARFPEVLEAAA-ETLEPHRLANY-LYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLG 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHCCcHHHHHH-HHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456677777878888888 89999999999 999999999999877654211 1 122467788899999999999999
Q ss_pred CCCC
Q 013130 349 LLPP 352 (449)
Q Consensus 349 i~~~ 352 (449)
|.|.
T Consensus 116 i~~~ 119 (122)
T smart00836 116 ISAP 119 (122)
T ss_pred CCcc
Confidence 9764
No 130
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=94.63 E-value=0.038 Score=56.31 Aligned_cols=70 Identities=17% Similarity=0.008 Sum_probs=43.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-e-CC-ccccccCCC-ccCHHHHHHhcChhHHHHHHh
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSLGN-FFTIRQITERYHPLALRHFLI 222 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll 222 (449)
...|+..+|.|... |++.-.-....++.. ++.+.+|+.+|. . +| .|||||.+| .|.+.| +++.+|=-+.
T Consensus 209 l~adivpvG~DQ~~-~~~LaRdia~~~~~~-~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kKI~ 281 (383)
T PTZ00126 209 LKADICQLGMDQRK-VNMLAREYCDKKKIK-KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRKIK 281 (383)
T ss_pred cCCCEEEeCccHHH-HHHHHHHHHHHhCCC-CCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHHHH
Confidence 35789999999864 444333333333322 233445666664 4 45 799999987 587776 6777776666
Q ss_pred h
Q 013130 223 S 223 (449)
Q Consensus 223 ~ 223 (449)
+
T Consensus 282 k 282 (383)
T PTZ00126 282 K 282 (383)
T ss_pred h
Confidence 5
No 131
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=94.37 E-value=0.089 Score=57.14 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCcc-c-cccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQ-P-RVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 77 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~-~-rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~ 77 (449)
+.++++++.+.+++.|++||+.. |.- + .|.+ +...++..+.+|.++|+||.+..-|+||+.+-
T Consensus 104 ~~~~~~~~~~~~~~~~~~lG~~~-Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~ 170 (601)
T PF00133_consen 104 CREWAEEFIEEQKEQFKRLGVSI-DWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQ 170 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--S-ECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTT
T ss_pred hcchhhhhhhhhhhhhhheeeec-ccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccc
Confidence 67899999999999999999986 422 2 2333 78889999999999999999999999998763
No 132
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=94.23 E-value=0.58 Score=46.96 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=40.3
Q ss_pred CccEEeecccCcCchhHHHHHHHhhcc---CCC---CCcEEE-eeeeee-eCC-ccccccCCCccCHHHHHHhcChhHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAAC---QDS---NVSYWM-HNGHVT-NNN-EKMSKSLGNFFTIRQITERYHPLALR 218 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~---~~~---~~~~~~-h~g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~lR 218 (449)
..|+..+|.|... |++.-.-...-++ +.| .+..++ ++..+. .+| .|||||.+|.|.+.| +++.++
T Consensus 142 ~~d~vpvG~DQ~~-h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D-----~pe~I~ 215 (333)
T PRK12282 142 KATLVPVGDDQLP-MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD-----DADTIK 215 (333)
T ss_pred CCCEEEeccccHH-HHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC-----CHHHHH
Confidence 5699999999865 6555443333332 212 112212 222332 366 899999999987666 555555
Q ss_pred HHHhh
Q 013130 219 HFLIS 223 (449)
Q Consensus 219 ~~ll~ 223 (449)
=-+.+
T Consensus 216 kKI~~ 220 (333)
T PRK12282 216 KKVMS 220 (333)
T ss_pred HHHHh
Confidence 44443
No 133
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=94.17 E-value=0.019 Score=56.50 Aligned_cols=69 Identities=23% Similarity=0.165 Sum_probs=41.1
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCC---CCCcEEEeeeeee-eCCc-cccccCCC-ccCHHHHHHhcChhHHHHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQD---SNVSYWMHNGHVT-NNNE-KMSKSLGN-FFTIRQITERYHPLALRHFL 221 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~---~~~~~~~h~g~l~-~~G~-KMSKSlGN-~i~~~dll~~yg~D~lR~~l 221 (449)
..|+..||.|... |+..-.-...-++.. +.+.. +++-++. .+|. |||||.+| .|.+.| +++.+|=.+
T Consensus 149 ~~~~~~~G~DQ~~-~~~l~rd~a~k~~~~~~~~~p~~-l~~~~l~~l~G~~KMSKS~~ns~I~L~d-----~~~~i~~Ki 221 (292)
T PF00579_consen 149 KADLVPGGIDQRG-HIELARDLARKFNYKEIFPKPAG-LTSPLLPGLDGQKKMSKSDPNSAIFLDD-----SPEEIRKKI 221 (292)
T ss_dssp THSEEEEEGGGHH-HHHHHHHHHHHHTHHSTSSS-EE-EEETCBBSTTSSSBTTTTTTGGS-BTTT-----THHHHHHHH
T ss_pred ccccccccchHHH-HHHHHHHHHhhhcccccccCchh-eeeccccccCCccccCccCCccEEEEec-----cchhHHHHH
Confidence 4679999999755 444333333333322 23333 4556665 5888 99999999 777666 455555544
Q ss_pred hh
Q 013130 222 IS 223 (449)
Q Consensus 222 l~ 223 (449)
..
T Consensus 222 ~~ 223 (292)
T PF00579_consen 222 KK 223 (292)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 134
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=93.98 E-value=0.04 Score=55.17 Aligned_cols=69 Identities=25% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCc--cccccC-CCccCHHHHHHhcChhHHHHHHh
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE--KMSKSL-GNFFTIRQITERYHPLALRHFLI 222 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~--KMSKSl-GN~i~~~dll~~yg~D~lR~~ll 222 (449)
...|+..+|.|... |++.-.-...-++...+. . +++.+|. .+|. |||||. ||.|.+.| +++.+|==+.
T Consensus 167 ~~ad~vpvG~DQ~~-h~~l~Rdia~~~n~~~p~-~-l~~~~l~~L~g~~~KMSKS~p~~~I~L~D-----~~~~I~~KI~ 238 (329)
T PRK08560 167 LDVDIAVGGMDQRK-IHMLAREVLPKLGYKKPV-C-IHTPLLTGLDGGGIKMSKSKPGSAIFVHD-----SPEEIRRKIK 238 (329)
T ss_pred hCCCEEEechhHHH-HHHHHHHhhHhcCCCCce-E-EEcCccCCCCCCCCCCcCCCCCCeecccC-----CHHHHHHHHH
Confidence 36789999999875 555444443333333332 3 4445654 5776 999999 99998776 5566655444
Q ss_pred h
Q 013130 223 S 223 (449)
Q Consensus 223 ~ 223 (449)
+
T Consensus 239 k 239 (329)
T PRK08560 239 K 239 (329)
T ss_pred h
Confidence 4
No 135
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=93.34 E-value=0.073 Score=52.09 Aligned_cols=69 Identities=19% Similarity=0.096 Sum_probs=43.4
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccC-----CCCCcEEEee--eeee-eCC--ccccccCC-CccCHHHHHHhcChhH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQ-----DSNVSYWMHN--GHVT-NNN--EKMSKSLG-NFFTIRQITERYHPLA 216 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~-----~~~~~~~~h~--g~l~-~~G--~KMSKSlG-N~i~~~dll~~yg~D~ 216 (449)
..++..+|.|... |++.-.-....++. -+.+.. +|+ .++. .+| .|||||.| |.|.+.| +++.
T Consensus 137 ~~~~vpvG~DQ~~-h~~l~Rdia~r~n~~~~~~~~~P~~-l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~~~ 209 (280)
T cd00806 137 KACLVPVGIDQDP-HLELTRDIARRFNKLYGEIFPKPAA-LLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SPKE 209 (280)
T ss_pred cCCEEeeccccHH-HHHHHHHHHHHhccccccccCCCee-eccCCCccccCCCCCCcccCCCCCCeEEeeC-----CHHH
Confidence 4688889999854 76665544444441 123334 454 4443 344 59999999 9998776 5666
Q ss_pred HHHHHhh
Q 013130 217 LRHFLIS 223 (449)
Q Consensus 217 lR~~ll~ 223 (449)
+|=-+.+
T Consensus 210 i~~KI~~ 216 (280)
T cd00806 210 IKKKIMK 216 (280)
T ss_pred HHHHHHh
Confidence 6655544
No 136
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.31 E-value=0.062 Score=54.69 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=24.4
Q ss_pred eeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 186 GHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 186 g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
..+. .+|+|||||.+|.|.+.| +++.+|=-+.+
T Consensus 255 ~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 255 SKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 3443 488999999999998766 66666666655
No 137
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.20 E-value=0.064 Score=53.83 Aligned_cols=70 Identities=20% Similarity=0.055 Sum_probs=41.3
Q ss_pred CccEEeecccCcCchhHHHHHHHhhcc---C---CCCCcEEEee-eeee-eCCc--cccccCC---CccCHHHHHHhcCh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAAC---Q---DSNVSYWMHN-GHVT-NNNE--KMSKSLG---NFFTIRQITERYHP 214 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~---~---~~~~~~~~h~-g~l~-~~G~--KMSKSlG---N~i~~~dll~~yg~ 214 (449)
..|+..+|.|..+ |++.-.-...-++ + ..|.-++..+ ..|. .+|. |||||.+ |.|.+.| ++
T Consensus 138 ~~divpvG~DQ~~-h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D-----~~ 211 (333)
T PRK00927 138 KADLVPVGEDQKQ-HLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD-----DP 211 (333)
T ss_pred CCCEEeeccchHH-HHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----CH
Confidence 5799999999855 6665444333332 1 1233231111 2232 4665 9999999 8887766 56
Q ss_pred hHHHHHHhh
Q 013130 215 LALRHFLIS 223 (449)
Q Consensus 215 D~lR~~ll~ 223 (449)
+.++=-+.+
T Consensus 212 ~~I~~KI~~ 220 (333)
T PRK00927 212 KTIAKKIKK 220 (333)
T ss_pred HHHHHHHHh
Confidence 666555544
No 138
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.00 E-value=0.052 Score=55.09 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=44.5
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhc----cCCCCCcEEEeeeeee-eCCccccccC-CCccCHHHHHHhcChhHHHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAA----CQDSNVSYWMHNGHVT-NNNEKMSKSL-GNFFTIRQITERYHPLALRHF 220 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~----~~~~~~~~~~h~g~l~-~~G~KMSKSl-GN~i~~~dll~~yg~D~lR~~ 220 (449)
+..++..+|.|.. ||++.-.-...-+ +-..|. . +|+-++. .+|.|||||. +|.|.+.| +++.++=-
T Consensus 202 ~~~~lvPvG~DQ~-~h~~ltRdiA~r~n~~~gf~~P~-~-l~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kK 273 (368)
T PRK12285 202 PKPTLVPVGIDQD-PHIRLTRDIAERLHGGYGFIKPS-S-TYHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKK 273 (368)
T ss_pred CCceEEEeccchH-HHHHHHHHHHHHHhhhcCCCCch-h-HhhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHH
Confidence 4457889999985 4776654444333 223333 3 3455653 6889999998 67888766 56666655
Q ss_pred Hhh
Q 013130 221 LIS 223 (449)
Q Consensus 221 ll~ 223 (449)
+.+
T Consensus 274 I~k 276 (368)
T PRK12285 274 IMK 276 (368)
T ss_pred HHh
Confidence 554
No 139
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.74 E-value=0.15 Score=50.28 Aligned_cols=66 Identities=18% Similarity=-0.032 Sum_probs=40.6
Q ss_pred HHHhhcCCCccEEeecccCcCchhHHHHHHHhhcc---C--CCCCcEEEeee--eee-eCC-ccccccCCC-ccCHHH
Q 013130 140 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---Q--DSNVSYWMHNG--HVT-NNN-EKMSKSLGN-FFTIRQ 207 (449)
Q Consensus 140 ~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~---~--~~~~~~~~h~g--~l~-~~G-~KMSKSlGN-~i~~~d 207 (449)
|+...+=+..++-..|.|... |.+-..-...-++ + -+.+.. +++. ++. .+| .|||||.+| +|.+.|
T Consensus 137 qAADILl~~a~~VPVG~DQ~q-HleLtRDiA~rfn~~y~~~f~~P~~-~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 137 QAADILLYQATLVPVGEDQDQ-HLELTRDIARRFNHLYGEVFPLPEA-LISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred HHHHhhhccCCeeccCCCchH-HHHHHHHHHHHHHhhcCCccCCccc-cccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 444444345688899999764 8776654444443 1 122333 2345 554 577 899999999 776544
No 140
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.52 E-value=0.27 Score=51.09 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeec
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~ 67 (449)
..|..=..++...+.+|+..|||.+ |.++.||+|-+.|..+..+|+..|.||..+
T Consensus 242 TNPaKE~~eFe~~IleDl~~LgIkp-d~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 242 TNPAKENEEFEDVILEDLSLLGIKP-DRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred CCcchhhHHHHHHHHHHHHHhCcCc-ceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 3456666788999999999999996 999999999999999999999999999864
No 141
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.89 E-value=0.14 Score=52.42 Aligned_cols=51 Identities=22% Similarity=0.068 Sum_probs=33.6
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCC
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 201 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 201 (449)
..|+.+||.|.-+.|..- +-....++.. +.+-+|+-.|+ .+|.|||||.||
T Consensus 180 ~~dlq~GG~DQ~~ni~~g-rdl~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 180 NKDLQLGGSDQWGNILAG-RDLIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred ccchhcCChHHHHHHHHH-HHHHHHhCCC--CeEEEEeccccCCCCCcccccCCC
Confidence 458999999987766432 2222223332 23446766665 599999999999
No 142
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=90.58 E-value=0.2 Score=51.12 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=31.7
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeee-eeCCccccccCCCccCHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQ 207 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~d 207 (449)
..|+..||.|..+ |..--.-...-.+..+ ... +..-.+ ..+|.|||||.||.|+..+
T Consensus 177 ~~di~~gG~DQ~~-ni~~g~dLar~~~~~~-~~~-~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVDLQIGGSDQWG-NIRKGRDLIRRNLPSL-GFG-LTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCCeeEecchhHH-HHHHHHHHHHHhcCCC-cee-eceeeecCCCCCCccCCCCCcccCCc
Confidence 4689999999754 4332222222222222 111 222233 2479999999999876543
No 143
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.33 E-value=0.49 Score=53.24 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCcc-cccc---ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQ-PRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~-~rtt---~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+.++|.+|.+..++.+++|||.- |+- |-.| +++..+...+.+|.+||++|++..-||||+++
T Consensus 129 Cr~~a~~~v~~q~~~f~RLGv~~-Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c 194 (933)
T COG0060 129 CREFALEQVDEQKEQFKRLGVWG-DWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRC 194 (933)
T ss_pred HHHHHHHHHHHHHHHHHhheEee-ccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCC
Confidence 56788889999999999999986 542 4455 37788999999999999999998889998765
No 144
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=89.90 E-value=0.32 Score=53.09 Aligned_cols=59 Identities=17% Similarity=-0.007 Sum_probs=34.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eC-C-ccccccC-CCccCHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-N-EKMSKSL-GNFFTIRQ 207 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-G-~KMSKSl-GN~i~~~d 207 (449)
...|+..+|.|... |++.-.-...-+ +..+..+.+|+.++. .+ | .|||||. +|.|.+.|
T Consensus 174 l~adivpvG~DQ~q-h~eLaRdia~~~-g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRK-VNMLAREYCDLI-GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHH-HHHHHHHHHHHh-CCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 35788899999774 555433222222 222223445655543 33 4 6999999 68887655
No 145
>PLN02959 aminoacyl-tRNA ligase
Probab=89.02 E-value=0.7 Score=53.61 Aligned_cols=63 Identities=5% Similarity=-0.024 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCcc-c-cccc----cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQ-P-RVSD----HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~-~-rtt~----h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
+|+.+++.+...++++|++||+.- |+- + .|++ +...|+..|.+|.++|++|.+..-|+||+.+
T Consensus 182 dp~~~~~yF~~~~~~~~k~lG~~i-DW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~ 250 (1084)
T PLN02959 182 DPYHWLSYFPPLAKEDLKAFGLGC-DWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLD 250 (1084)
T ss_pred CHHHHHHhccHHHHHHHHHhCceE-eCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCC
Confidence 466677778889999999999986 532 2 2444 5677999999999999999999889998765
No 146
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.72 E-value=0.94 Score=50.51 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCc-ccccc---ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTY-QPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~-~~rtt---~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
..|+.+++...+++-|++||++. |+ .-|-| .....|++.|-+|+++|+||.+..-|-.|+.+
T Consensus 113 ~weWk~e~~~~I~~Q~~rLG~S~-DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~ 178 (877)
T COG0525 113 CWEWKEESGGTIREQLRRLGVSV-DWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKC 178 (877)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc-ccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCcc
Confidence 34677899999999999999997 53 23334 37889999999999999999988766666543
No 147
>PLN02486 aminoacyl-tRNA ligase
Probab=88.68 E-value=0.38 Score=49.12 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=38.3
Q ss_pred ecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHHHHHhcChhHHHHHHhh
Q 013130 154 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 154 ~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll~ 223 (449)
.|.|. .||+..-.-...-++...|. + +|+.++. +.| .|||||.+| .|.+.| +++.++=.+.+
T Consensus 225 vG~DQ-d~~~~ltRdia~r~~~~kp~-~-~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 225 CAIDQ-DPYFRMTRDVAPRLGYYKPA-L-IESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred cccch-HHHHHHHHHHHHHhCCCCcc-e-eccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 36665 45666554444444443333 3 4656664 455 799999988 688777 67777666654
No 148
>PLN02886 aminoacyl-tRNA ligase
Probab=87.74 E-value=2.2 Score=43.62 Aligned_cols=25 Identities=20% Similarity=-0.028 Sum_probs=17.4
Q ss_pred CCccEEeecccCcCchhHHHHHHHhh
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCA 172 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a 172 (449)
...|+-.+|.|... |++.-.-...-
T Consensus 183 ~~a~~VPVG~DQ~q-H~eLtRdiA~r 207 (389)
T PLN02886 183 YQADLVPVGEDQKQ-HLELTRDIAER 207 (389)
T ss_pred cCCCeEEEccchHH-HHHHHHHHHHH
Confidence 35789999999765 77765544433
No 149
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=68.87 E-value=7.4 Score=36.22 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 19 NRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 19 ~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
+.|.+.+++.|+.||+.. +.-.+.+.+.+.|. ++|.++..+|++.|+-++
T Consensus 48 ~~Yv~k~~~~l~~lg~~v-~~L~l~~~~~~~Ie---~~l~~~d~IyVgGGNTF~ 97 (224)
T COG3340 48 DFYVEKVRNALAKLGLEV-SELHLSKPPLAAIE---NKLMKADIIYVGGGNTFN 97 (224)
T ss_pred HHHHHHHHHHHHHcCCee-eeeeccCCCHHHHH---HhhhhccEEEECCchHHH
Confidence 779999999999999996 88899988887665 678889999999886543
No 150
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=61.82 E-value=45 Score=24.29 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 19 NRYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 19 ~~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
++..+...+.+..-.+.+.+.+|...+ ....|.+.+..|.+.|+++...+.++|
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~~ 63 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRGTF 63 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceEE
Confidence 444566677777777777677766553 345789999999999999999888876
No 151
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=61.52 E-value=15 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHcHh
Q 013130 376 DVLQLIEERAAARKNKDFSKSDQIRADLTR 405 (449)
Q Consensus 376 ~i~~li~~R~~aR~~Kdf~~AD~IRd~L~~ 405 (449)
.+..|-..-..|-.+-+|+.|=.|||.|..
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 345555566666778999999999998865
No 152
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=58.95 E-value=5.8 Score=38.50 Aligned_cols=51 Identities=27% Similarity=0.189 Sum_probs=29.5
Q ss_pred hcCCCccEEeecccCcCchhHHHHHHHh--hccCCCCCcEEEeeeeee-e-CCccccccCCC
Q 013130 144 YLSSKFDIHGGGIDLIFPHHENEIAQSC--AACQDSNVSYWMHNGHVT-N-NNEKMSKSLGN 201 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~~H~~~~~a~~~--a~~~~~~~~~~~h~g~l~-~-~G~KMSKSlGN 201 (449)
|+ .+|+++||.|.-.- +..|--. .++.+ +++.+.|-+|- . .|+|||+|--|
T Consensus 175 ~L--~vD~qfgGvDQRKI---f~~A~eylp~l~yk--KrihLmnpMvPGL~q~~KMSsSd~~ 229 (360)
T KOG2144|consen 175 YL--EVDAQFGGVDQRKI---FVLAEEYLPDLGYK--KRIHLMNPMVPGLAQGEKMSSSDPL 229 (360)
T ss_pred HH--hhhHHhcCccHHHH---HHHHHHhhhhhCcc--cceeecCCCCccccccCccccCCcc
Confidence 55 68999999996432 2222211 12223 34444445552 3 59999999765
No 153
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.15 E-value=24 Score=38.78 Aligned_cols=60 Identities=7% Similarity=0.135 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCccc-ccc---ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 16 SLSNRYCQEYLVDMADLQCLPPTYQP-RVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 16 e~~~~~~~~f~~~~~~L~I~~~d~~~-rtt---~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
.+|+.-.+.-.+.|.++||.- |+-. -.| ++.-...++|.+|+++|++|.+..-||.+.+.
T Consensus 135 ~fA~~AIk~Q~e~F~r~gv~a-DW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSS 198 (937)
T KOG0433|consen 135 IFADEAIKKQMEAFRRWGVTA-DWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSS 198 (937)
T ss_pred HHHHHHHHHHHHHHHHheeec-cCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcc
Confidence 468888889999999999986 6542 233 47777889999999999999987778887653
No 154
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.51 E-value=22 Score=37.98 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEe
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 65 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~ 65 (449)
..|..=..+|-..+.++...||..| -..+-.|++-+.+-++...|+.+|+||.
T Consensus 290 TNPEkEee~yf~sI~e~V~WLG~~P-~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 290 TNPEKEEEEYFESIKEMVAWLGFEP-YKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred CCcchhhHHHHHHHHHHHHHhCCCc-eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 4577778899999999999999996 7778888999999999999999999996
No 155
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.98 E-value=50 Score=36.19 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHhhCC--CCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCC
Q 013130 14 PLSLSNRYCQEYLVDMADLQ--CLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVE 75 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~--I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~ 75 (449)
+..++-+|+.++++.+.+|| |.+.+ =-+|-. .++.|--.+..|.+||.+|.+-.-.-|++.
T Consensus 119 CR~IVmrYssEWe~tv~RlGRWidF~n-dYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STa 183 (1070)
T KOG0434|consen 119 CRKIVMRYSSEWEKTVERLGRWIDFDN-DYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTA 183 (1070)
T ss_pred HHHHHHHHHHHHHHHHHhhccceeccC-CcceecHHHHHHHHHHHHHHHhcCceecceeeeccccc
Confidence 66788999999999999999 66633 234432 667777889999999999997544445543
No 156
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=34.44 E-value=1.7e+02 Score=20.68 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 47 MEQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 47 ~~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
.+.+...+.+|.+.|++....+.+|+
T Consensus 39 ~~~v~~~l~~L~~~G~i~~~~~~~~~ 64 (66)
T cd07377 39 RTTVREALRELEAEGLVERRPGRGTF 64 (66)
T ss_pred HHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 35788999999999999876665554
No 157
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=32.39 E-value=70 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHHcCCeEeecCcEEEeCC
Q 013130 45 DHMEQIKDMITQIINNDCAYVVEGDVFFAVE 75 (449)
Q Consensus 45 ~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~ 75 (449)
+|-+.|+++|+.|.++.=+| |+.||...
T Consensus 24 ~~Pe~Vi~iIN~lR~keGvY---G~c~~~e~ 51 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGVY---GSCYYKEN 51 (63)
T ss_pred cCHHHHHHHHHHhhhccCce---eEEEEecC
Confidence 37789999999999998888 77888553
No 158
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=31.84 E-value=2.5e+02 Score=31.23 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhH
Q 013130 278 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSE 357 (449)
Q Consensus 278 l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~ 357 (449)
-..+...+.+++ ..|.++. ... + .+++.+|.|.+-...|. ...+......|++++.+|-+.|+
T Consensus 611 g~~l~~~l~~h~-kk~~vs~-~Gg-~-~l~~Dl~~Y~~~~~~~~--------~~~v~~~F~~L~~l~nl~~v~~~----- 673 (710)
T PF07393_consen 611 GERLHRLLLKHL-KKFTVSS-TGG-L-QLIKDLNEYQDFIRSWG--------IPSVDEKFEALKELGNLFIVDPE----- 673 (710)
T ss_pred HHHHHHHHHHHH-HhCccCc-hhH-H-HHHHHHHHHHHHHHHcC--------CchHHHHHHHHHHHHhheeecHH-----
Confidence 344556666777 5655544 333 2 35788899988888785 12233445777888888877443
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCC
Q 013130 358 VLQQLKDKALKRAELTEEDVLQLIEERAAARKNK 391 (449)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~K 391 (449)
.+.++.... .......+++.+.|..|++.+..|
T Consensus 674 ~l~~~~~~~-~~~~~~~~~i~~fi~~R~D~~~~~ 706 (710)
T PF07393_consen 674 NLKELCREG-QLGRFSPEEIYEFIQRRSDWKSIK 706 (710)
T ss_pred HHHHHHhhc-cccCCCHHHHHHHHHHhhhhhhcc
Confidence 222222111 123456789999999999877543
No 159
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.60 E-value=24 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=14.6
Q ss_pred eeeeeCCccccccCCCcc
Q 013130 186 GHVTNNNEKMSKSLGNFF 203 (449)
Q Consensus 186 g~l~~~G~KMSKSlGN~i 203 (449)
.+|-+||.|||+|+.-.-
T Consensus 30 DlLvvdG~K~SgsLlk~k 47 (216)
T COG3110 30 DLLVVDGKKVSGSLLKGK 47 (216)
T ss_pred cEEEecCcccccccccCc
Confidence 577789999999986543
No 160
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=29.33 E-value=1.9e+02 Score=19.84 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 48 EQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 48 ~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
..|...+..|.+.|++....|.+||
T Consensus 35 ~tv~~~l~~L~~~g~i~~~~~~g~~ 59 (60)
T smart00345 35 TTVREALSRLEAEGLVQRRPGSGTF 59 (60)
T ss_pred HHHHHHHHHHHHCCCEEEecCCeeE
Confidence 5788999999999999887777765
No 161
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=29.00 E-value=62 Score=26.01 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCCCCccccccc-cHHHHHHHHHHHHHcCCeEeecCcE
Q 013130 24 EYLVDMADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDV 70 (449)
Q Consensus 24 ~f~~~~~~L~I~~~d~~~rtt~-h~~~v~~~i~~L~~~G~aY~~~g~~ 70 (449)
.+...+...|+.+|-...|.+. ..+.|.+.+.+|.+.|++-..+|.+
T Consensus 11 ~IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 11 KILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 4556677788887766666665 7889999999999999999887763
No 162
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.95 E-value=66 Score=32.82 Aligned_cols=55 Identities=18% Similarity=0.029 Sum_probs=30.7
Q ss_pred CCccEEeecccCcC----chhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHH
Q 013130 147 SKFDIHGGGIDLIF----PHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIR 206 (449)
Q Consensus 147 ~~~Dih~~GkDli~----~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~ 206 (449)
..+.+++||.|..- .|+..-..+- ....+-- +..-.++ ..|.|.-||.||.|+++
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~----~~~~vfG-lT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMP----IQAFVFG-LTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhcc----cccceee-eeeeeEecCcchhhccCCCceEEec
Confidence 35789999999543 2222111111 0111111 2223444 48999999999998754
No 163
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=86 Score=30.67 Aligned_cols=42 Identities=24% Similarity=0.178 Sum_probs=20.8
Q ss_pred ccccccCCCccCHHHHHHhcChhHHHHHHhh--cCcCCCcccCHHH
Q 013130 193 EKMSKSLGNFFTIRQITERYHPLALRHFLIS--AHYRSPLNYSVLQ 236 (449)
Q Consensus 193 ~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~--~~~~~d~~fs~~~ 236 (449)
.|||||-+|--.-..+.+ ++|.++==+-. +...+.+.|+...
T Consensus 210 kKMSKSd~n~~s~I~l~D--S~~~I~~Ki~ka~TD~~~~vtYd~~~ 253 (347)
T KOG2713|consen 210 KKMSKSDPNPKSRINLTD--SPDLIVKKIKKAQTDNTSGVTYDPAN 253 (347)
T ss_pred hhcccCCCCCcceEEecC--CHHHHHHHHHHHhcccccceeeCCcc
Confidence 699999988322111111 34444333322 2455556665543
No 164
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=27.05 E-value=3.2e+02 Score=30.36 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 013130 271 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 318 (449)
Q Consensus 271 d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~ 318 (449)
+..|.+.+..+...+..++ ..-++..++.. +..+...++.|++..-
T Consensus 603 E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD~Vm 648 (682)
T PRK01233 603 EKALYAALEELKPKVEPAL-AAGDYQAALEA-LAALRPPVDAFFDNVM 648 (682)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHhhhhHHHHHhCCCe
Confidence 4556667777777778788 67799999999 9999999999998765
No 165
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.45 E-value=1e+02 Score=34.72 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccccc--c-c--cHHHHHHHHHHHHHcCCeEeecCcEEEeC
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRV--S-D--HMEQIKDMITQIINNDCAYVVEGDVFFAV 74 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rt--t-~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~ 74 (449)
..++-++|...+.+.+++||.+. | +.|. | + --.+|.+.|-+|.+.|.||.+.+-|-.|+
T Consensus 156 vw~Wk~e~g~~I~~Qlk~lGas~-D-W~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~ 219 (995)
T KOG0432|consen 156 VWEWKEEYGGRIYNQLKRLGASL-D-WDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCP 219 (995)
T ss_pred HHHHHHHhCccHHHHHHHhcCcc-c-ccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeech
Confidence 44566788889999999999997 5 3332 2 2 44679999999999999999877665543
No 166
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=24.59 E-value=2.9e+02 Score=23.57 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEeC
Q 013130 23 QEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFAV 74 (449)
Q Consensus 23 ~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~ 74 (449)
+.++..+-+=-+.+-+.-|.+-+ |-..|+...+.|.+.|++|..-|.+.|=.
T Consensus 18 ~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnTv~raY~eLE~eG~i~t~rg~G~fV~ 76 (125)
T COG1725 18 NQIKEQIASGELKPGDKLPSVRELAKDLGVNPNTVQRAYQELEREGIVETKRGKGTFVT 76 (125)
T ss_pred HHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCeeEEEc
Confidence 34444444444555455555543 56789999999999999999999988844
No 167
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=23.92 E-value=1.3e+02 Score=28.73 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCChHHHH-HHHHHHHHHHHhhCCCCCCCccccccc-----cHHHHHHHHHHHHHcCC-eEeec-CcEEEeC
Q 013130 11 GENPLSLS-NRYCQEYLVDMADLQCLPPTYQPRVSD-----HMEQIKDMITQIINNDC-AYVVE-GDVFFAV 74 (449)
Q Consensus 11 g~~~~e~~-~~~~~~f~~~~~~L~I~~~d~~~rtt~-----h~~~v~~~i~~L~~~G~-aY~~~-g~~yf~~ 74 (449)
|+|+..+. ..+.....+.+++.++.+.-.....|| +.+.+..++..|.+.|+ +...| |.+|-+.
T Consensus 93 Nis~~~l~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl 164 (256)
T COG2200 93 NLSPVQLRSPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSL 164 (256)
T ss_pred EcCHHHhCCchHHHHHHHHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 56787777 557778888899999987666666665 45578899999999993 33333 5555443
No 168
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.73 E-value=1.4e+02 Score=19.10 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.6
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHH
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLV 27 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~ 27 (449)
++..-|.+.|+|..++.......|.+
T Consensus 13 ~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 13 RLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 45677899999999999888777653
No 169
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.39 E-value=1.3e+02 Score=22.33 Aligned_cols=35 Identities=6% Similarity=-0.051 Sum_probs=27.2
Q ss_pred HHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecC
Q 013130 24 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG 68 (449)
Q Consensus 24 ~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g 68 (449)
.+++..+.||+.- ...|...+..|.++|+|-...|
T Consensus 27 t~rEIa~~~g~~S----------~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 27 TVREIAEALGLKS----------TSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp -HHHHHHHHTSSS----------HHHHHHHHHHHHHTTSEEEGCC
T ss_pred CHHHHHHHhCCCC----------hHHHHHHHHHHHHCcCccCCCC
Confidence 5778888888874 4578899999999999976543
No 170
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.35 E-value=1.1e+02 Score=19.13 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=13.8
Q ss_pred hhHHHHHHcCCChHHHHHH
Q 013130 2 QIIRRANDLGENPLSLSNR 20 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~ 20 (449)
.+++.|.+.|+|..++-..
T Consensus 7 ~Li~eA~~~Gls~eeir~F 25 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREF 25 (30)
T ss_dssp HHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 4688999999999988654
No 171
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.10 E-value=4.3e+02 Score=29.52 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 013130 307 LKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 386 (449)
Q Consensus 307 ~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~ 386 (449)
+..+|-|.+--.-|. ...+-.....|..++.+|-|.|. ...++ ... ...+..+.+.|-+.|+.|..
T Consensus 683 icDvn~y~~~i~~~~--------~~~vl~~F~tL~~L~nLliV~pd-~l~ev----~k~-~~la~f~~~~I~efv~lR~D 748 (763)
T KOG3745|consen 683 ICDVNEYRTFIHSLG--------QPSVLPYFKTLKALANLLIVKPD-NLEEV----GKG-KFLANFDREEIHEFVQLRTD 748 (763)
T ss_pred eccHHHHHHHHHHhC--------cccHHHHHHHHHHHHHHHeeChh-hHHHH----hch-hhhccccHHHHHHHHHHhhh
Confidence 557787777666664 11222344677778888888776 33322 111 12344567889999999999
Q ss_pred HhcCCChh
Q 013130 387 ARKNKDFS 394 (449)
Q Consensus 387 aR~~Kdf~ 394 (449)
.|-.|+..
T Consensus 749 ~r~~~~~~ 756 (763)
T KOG3745|consen 749 FRIIKNVQ 756 (763)
T ss_pred hhHHHHHH
Confidence 88777654
No 172
>PHA02754 hypothetical protein; Provisional
Probab=21.62 E-value=1.1e+02 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.2
Q ss_pred cCCChhHh-HHHHHHcHhCCCEEEe
Q 013130 389 KNKDFSKS-DQIRADLTRKGIALMD 412 (449)
Q Consensus 389 ~~Kdf~~A-D~IRd~L~~~Gi~i~D 412 (449)
.+|+|.++ -++||.|.+.||-|.-
T Consensus 12 ~eK~Fke~MRelkD~LSe~GiYi~R 36 (67)
T PHA02754 12 MEKDFKEAMRELKDILSEAGIYIDR 36 (67)
T ss_pred HHhHHHHHHHHHHHHHhhCceEEEE
Confidence 57888655 5799999999998754
No 173
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.50 E-value=1.4e+03 Score=27.32 Aligned_cols=23 Identities=4% Similarity=0.049 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 013130 295 TSHILTGAFQDALKFINSSLNMLK 318 (449)
Q Consensus 295 ~~~al~~~l~~l~~~~N~yi~~~~ 318 (449)
+.++.+. +.+|+..++.|+++..
T Consensus 1466 ~~~s~~e-l~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1466 MEESNRE-LRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHH-HHHHHHHHHHHhcCCC
Confidence 3455667 8888899999887654
No 174
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=21.08 E-value=1.7e+02 Score=27.18 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 48 EQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 48 ~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
..|...++.|.+.|+++...|.+.|
T Consensus 39 ~TVR~Al~~L~~eGli~r~~G~GTf 63 (233)
T TIGR02404 39 ETVRKALNLLTEAGYIQKIQGKGSI 63 (233)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceEE
Confidence 4688999999999999999999988
No 175
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=21.07 E-value=1.3e+02 Score=26.25 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 21 YCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 21 ~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
|.+.|++.++++|+.. +.....+.... ++.+.|.+-..||.+.|+.++
T Consensus 1 y~~~~~~~f~~~g~~v-~~l~~~~~~~~---~~~~~i~~ad~I~~~GG~~~~ 48 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEV-DQLDLSDRNDA---DILEAIREADAIFLGGGDTFR 48 (154)
T ss_dssp HHHHHHHHHHHCT-EE-EECCCTSCGHH---HHHHHHHHSSEEEE--S-HHH
T ss_pred CHHHHHHHHHHCCCEE-EEEeccCCChH---HHHHHHHhCCEEEECCCCHHH
Confidence 6788999999999984 65555554333 777888899999998887544
No 176
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=20.10 E-value=1.8e+02 Score=27.19 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCeEeecCcEEEe
Q 013130 48 EQIKDMITQIINNDCAYVVEGDVFFA 73 (449)
Q Consensus 48 ~~v~~~i~~L~~~G~aY~~~g~~yf~ 73 (449)
..|...+..|.+.|+++...|.+.|=
T Consensus 48 ~TvR~Al~~L~~eGli~r~~G~GTfV 73 (241)
T PRK11402 48 ITIRKAISDLVADGVLIRWQGKGTFV 73 (241)
T ss_pred HHHHHHHHHHHHCCCEEEecCceeEE
Confidence 46889999999999999999998884
Done!