Query 013130
Match_columns 449
No_of_seqs 289 out of 2496
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.6E-97 5E-102 762.2 32.0 386 1-421 75-461 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 2.4E-96 8E-101 756.3 28.0 391 1-422 102-501 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 3.4E-89 1.2E-93 707.3 30.8 388 1-421 72-460 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.7E-67 5.9E-72 539.5 27.0 292 1-312 89-390 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 2E-54 6.7E-59 454.0 20.3 348 1-361 56-465 (497)
6 3u1f_A Methionyl-tRNA syntheta 100.0 1.7E-53 5.7E-58 451.6 25.7 353 1-362 60-497 (542)
7 1rqg_A Methionyl-tRNA syntheta 100.0 9E-53 3.1E-57 457.0 27.4 359 1-363 54-520 (722)
8 2d5b_A Methionyl-tRNA syntheta 100.0 1.2E-52 4.2E-57 440.8 21.5 346 1-360 54-465 (500)
9 2x1l_A Methionyl-tRNA syntheta 100.0 3.7E-52 1.3E-56 439.4 24.1 354 1-362 63-489 (524)
10 3kfl_A Methionyl-tRNA syntheta 100.0 6.8E-51 2.3E-55 432.1 25.3 353 1-362 77-513 (564)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 2.6E-49 8.8E-54 418.4 28.1 354 1-362 76-496 (536)
12 3h99_A Methionyl-tRNA syntheta 100.0 9E-47 3.1E-51 400.9 29.2 352 1-362 69-519 (560)
13 1gax_A Valrs, valyl-tRNA synth 100.0 1.8E-38 6E-43 349.2 28.7 209 147-363 480-695 (862)
14 1iq0_A Arginyl-tRNA synthetase 100.0 1.8E-38 6.3E-43 337.9 14.7 325 8-352 207-589 (592)
15 1ffy_A Isoleucyl-tRNA syntheta 100.0 2.6E-36 9E-41 334.5 27.5 213 147-363 547-772 (917)
16 1ile_A Ilers, isoleucyl-tRNA s 100.0 6.3E-37 2.2E-41 337.9 21.9 212 147-363 543-770 (821)
17 1wkb_A Leucyl-tRNA synthetase; 100.0 1.6E-35 5.5E-40 326.9 27.2 203 147-360 602-807 (810)
18 1wz2_A Leucyl-tRNA synthetase; 100.0 1.5E-33 5.1E-38 315.2 29.1 206 147-363 602-810 (967)
19 2zue_A Arginyl-tRNA synthetase 100.0 1.1E-34 3.7E-39 309.9 15.8 313 12-352 240-626 (629)
20 1irx_A Lysyl-tRNA synthetase; 100.0 5.8E-36 2E-40 314.9 5.8 222 4-251 78-337 (523)
21 4arc_A Leucine--tRNA ligase; l 100.0 3.9E-32 1.3E-36 298.1 25.8 200 148-362 543-796 (880)
22 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.1E-31 3.7E-36 296.4 28.6 230 147-393 530-833 (878)
23 1f7u_A Arginyl-tRNA synthetase 100.0 7.9E-28 2.7E-32 255.3 20.1 301 2-352 243-604 (607)
24 3fnr_A Arginyl-tRNA synthetase 99.9 1.7E-26 5.7E-31 237.7 23.0 292 16-352 142-451 (464)
25 3aii_A Glutamyl-tRNA synthetas 99.9 2.9E-27 9.9E-32 244.7 5.3 213 13-243 139-395 (553)
26 1qtq_A GLNRS, protein (glutami 99.9 3.3E-26 1.1E-30 236.8 9.5 214 12-242 68-332 (553)
27 2hz7_A Glutaminyl-tRNA synthet 99.9 2.3E-24 7.7E-29 232.0 8.7 212 13-241 109-371 (851)
28 2cfo_A Glutamyl-tRNA synthetas 99.8 2.9E-21 9.9E-26 199.7 12.3 199 17-240 48-297 (492)
29 1nzj_A Hypothetical protein YA 99.8 3.7E-19 1.3E-23 173.0 9.0 167 13-202 48-236 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.3 4.1E-11 1.4E-15 123.8 17.1 184 12-224 55-292 (481)
31 1j09_A Glutamyl-tRNA synthetas 99.3 2.1E-11 7.3E-16 125.2 14.1 197 14-239 45-291 (468)
32 3afh_A Glutamyl-tRNA synthetas 99.2 8E-11 2.7E-15 121.5 15.9 195 13-239 68-302 (488)
33 3al0_C Glutamyl-tRNA(Gln) amid 99.2 1.1E-10 3.9E-15 123.1 16.5 180 13-224 172-389 (592)
34 4g6z_A Glutamate-tRNA ligase; 99.1 4E-09 1.4E-13 108.4 17.5 201 12-240 67-312 (490)
35 2ja2_A Glutamyl-tRNA synthetas 98.7 3.5E-07 1.2E-11 94.4 17.2 199 12-239 48-305 (498)
36 4gri_A Glutamate--tRNA ligase; 98.1 3.7E-05 1.3E-09 80.0 15.5 199 13-240 67-322 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 97.6 3.3E-05 1.1E-09 75.8 4.5 69 148-224 170-239 (323)
38 1h3f_A Tyrosyl-tRNA synthetase 96.8 0.00083 2.9E-08 68.1 4.8 69 148-224 187-257 (432)
39 2yxn_A Tyrosyl-tRNA synthetase 96.8 0.0004 1.4E-08 67.9 2.4 72 148-224 191-263 (322)
40 2g36_A Tryptophanyl-tRNA synth 96.7 0.00096 3.3E-08 65.6 4.3 72 147-224 152-230 (340)
41 1y42_X Tyrosyl-tRNA synthetase 96.6 0.0011 3.8E-08 66.4 3.7 74 148-224 232-321 (392)
42 2pid_A Tyrosyl-tRNA synthetase 96.5 0.001 3.5E-08 65.8 2.7 72 148-224 210-282 (356)
43 2el7_A Tryptophanyl-tRNA synth 96.4 0.023 7.7E-07 55.7 12.0 71 147-224 140-220 (337)
44 1jil_A Tyrrs, tyrosyl-tRNA syn 96.4 0.0013 4.5E-08 66.5 2.8 71 148-223 186-258 (420)
45 2jan_A Tyrosyl-tRNA synthetase 96.4 0.0012 4.3E-08 66.7 2.5 72 148-224 187-260 (432)
46 2ts1_A Tyrosyl-tRNA synthetase 96.3 0.0019 6.4E-08 65.2 3.3 71 148-223 185-257 (419)
47 1n3l_A Tyrosyl-tRNA synthetase 96.3 0.0024 8.2E-08 63.6 3.9 69 147-223 177-247 (372)
48 3tzl_A Tryptophanyl-tRNA synth 96.0 0.0021 7E-08 62.8 2.0 71 147-223 138-216 (322)
49 2dlc_X Tyrosyl-tRNA synthetase 95.9 0.0027 9.1E-08 63.8 2.3 69 147-223 181-252 (394)
50 1yi8_B Tryptophanyl-tRNA synth 95.5 0.006 2.1E-07 60.2 2.9 70 148-223 162-239 (351)
51 2zp1_A Tyrosyl-tRNA synthetase 95.2 0.012 3.9E-07 57.3 3.9 64 148-223 163-228 (314)
52 3vgj_A Tyrosyl-tRNA synthetase 94.9 0.013 4.5E-07 58.2 3.5 69 148-223 200-272 (373)
53 2cya_A Tyrosyl-tRNA synthetase 94.9 0.01 3.5E-07 58.9 2.5 69 147-223 176-263 (364)
54 3hzr_A Tryptophanyl-tRNA synth 94.8 0.021 7.4E-07 56.8 4.6 67 149-223 225-294 (386)
55 1i6k_A TRPRS, tryptophanyl-tRN 94.5 0.015 5.1E-07 56.8 2.5 74 144-223 133-219 (328)
56 2cyc_A Tyrosyl-tRNA synthetase 94.3 0.025 8.4E-07 56.3 3.7 71 147-223 179-276 (375)
57 3i05_A Tryptophanyl-tRNA synth 94.3 0.015 5E-07 58.3 1.9 66 149-222 225-293 (395)
58 2yy5_A Tryptophanyl-tRNA synth 94.1 0.024 8.4E-07 55.7 3.1 76 142-223 141-229 (348)
59 2j5b_A Tyrosyl-tRNA synthetase 94.0 0.026 8.8E-07 55.6 3.0 68 148-223 186-257 (348)
60 3tze_A Tryptophanyl-tRNA synth 93.5 0.03 1E-06 56.1 2.6 59 146-207 241-303 (406)
61 2ip1_A Tryptophanyl-tRNA synth 93.5 0.027 9.2E-07 57.0 2.2 57 148-207 249-309 (432)
62 3jxe_A Tryptophanyl-tRNA synth 93.2 0.046 1.6E-06 54.5 3.3 56 149-207 208-267 (392)
63 3p0j_A Tyrosyl-tRNA synthetase 93.0 0.044 1.5E-06 58.7 3.0 56 148-205 183-242 (690)
64 3hv0_A Tryptophanyl-tRNA synth 92.8 0.035 1.2E-06 55.4 1.8 55 150-207 222-280 (393)
65 1r6u_A Tryptophanyl-tRNA synth 92.3 0.054 1.9E-06 54.8 2.4 66 150-223 258-327 (437)
66 3prh_A Tryptophanyl-tRNA synth 91.4 0.055 1.9E-06 53.8 1.3 71 147-223 170-253 (388)
67 3foc_A Tryptophanyl-tRNA synth 91.2 0.072 2.5E-06 54.0 1.9 54 151-207 290-347 (451)
68 1r6t_A Tryptophanyl-tRNA synth 91.1 0.091 3.1E-06 53.8 2.7 55 150-207 305-363 (477)
69 3sz3_A Tryptophanyl-tRNA synth 88.2 0.13 4.4E-06 50.4 1.0 71 147-223 142-228 (341)
70 3n9i_A Tryptophanyl-tRNA synth 87.9 0.23 7.7E-06 48.7 2.6 71 147-223 151-234 (346)
71 3a04_A Tryptophanyl-tRNA synth 83.7 0.76 2.6E-05 45.4 4.0 60 146-207 206-270 (372)
72 3tqn_A Transcriptional regulat 31.5 1.4E+02 0.0048 23.2 7.0 58 17-74 10-74 (113)
73 3neu_A LIN1836 protein; struct 29.4 1.7E+02 0.0058 23.2 7.3 58 17-74 14-78 (125)
74 2ek5_A Predicted transcription 26.3 1.8E+02 0.0063 23.3 7.0 55 19-73 7-68 (129)
75 3by6_A Predicted transcription 26.1 1.9E+02 0.0065 23.0 7.0 58 17-74 12-76 (126)
76 4ham_A LMO2241 protein; struct 24.6 1E+02 0.0035 24.9 5.1 51 23-73 21-78 (134)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-97 Score=762.25 Aligned_cols=386 Identities=42% Similarity=0.695 Sum_probs=286.4
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 79 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~ 79 (449)
.||+++|++.|++|+++|++|++.|+++|++|||.+|+++||+|+|++.|+++|++|+++|+||++ +|+||||+++|+.
T Consensus 75 dKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~ 154 (462)
T 3tqo_A 75 DKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKD 154 (462)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccc
Confidence 389999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
||+||+++++++..|.|++.+.+|+||.||+|||.+++|+|+|+||||.||||||||||+|+.+|||.++|||+||.||+
T Consensus 155 yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~ 234 (462)
T 3tqo_A 155 YGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK 234 (462)
T ss_dssp TTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGT
T ss_pred cccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHH
Q 013130 160 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS 239 (449)
Q Consensus 160 ~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~ 239 (449)
||||+|++||++|+++.||+++|+|+|+|+++|+|||||+||||+|.+++++||+|++|||+++++|++|++||++.|.+
T Consensus 235 FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~ 314 (462)
T 3tqo_A 235 FPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN 314 (462)
T ss_dssp TTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred cHHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013130 240 ASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 319 (449)
Q Consensus 240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~p 319 (449)
+.+.+.+|++.+.++. ... . ..+..+.+.|.++|+|||||+.|++. |+++++.+|.+++...
T Consensus 315 a~~~l~rl~~~~~~~~----~~~----~--------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~- 376 (462)
T 3tqo_A 315 GRLALERFYLALRGLP----VVN----H--------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ- 376 (462)
T ss_dssp HHHHHHHHHHHHTTCC----C------------------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhh----hcc----c--------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc-
Confidence 9999999998875431 100 0 11345678899999999999999999 9999999999876432
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChhHhHHH
Q 013130 320 KQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQI 399 (449)
Q Consensus 320 w~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~I 399 (449)
...+..+...+..++.+|||... .....++ . ....+.+++|+.||++|++||++|||++||+|
T Consensus 377 ----------~~~~~~~~~~~~~~~~vlg~~~~-~~~~~~~---~---~~~~~~~~~i~~li~~R~~ar~~kd~~~aD~i 439 (462)
T 3tqo_A 377 ----------IEKAAVLAAELKCLGNIFGLLQY-SPEQFLQ---G---AKKEADVQEIKKLIDQRNEARAKKDWKTADQI 439 (462)
T ss_dssp ----------HHHHHHHHHHHHHHHGGGTCSCS-CHHHHC----------------------------------------
T ss_pred ----------HHHHHHHHHHHHHHHHhcCCCcc-chhhhhh---c---cccccCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11223445678888999999765 2221111 0 00122346799999999999999999999999
Q ss_pred HHHcHhCCCEEEecCCCeEEEe
Q 013130 400 RADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 400 Rd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
|++|.++||.|+|||+||+|++
T Consensus 440 R~~L~~~Gi~l~D~~~g~~w~~ 461 (462)
T 3tqo_A 440 RDQLTDLGVAIEDSSDGTSWRQ 461 (462)
T ss_dssp ----------------------
T ss_pred HHHHHHCCcEEEEcCCCcEEEe
Confidence 9999999999999999999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=2.4e-96 Score=756.31 Aligned_cols=391 Identities=28% Similarity=0.443 Sum_probs=288.1
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCcc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 80 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~y 80 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+|++++|+|+|++.|+++|++|+++|+||+++|+|||||++|+.|
T Consensus 102 dKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~~y 181 (501)
T 3sp1_A 102 DKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSY 181 (501)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCTTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccc-ccccCCCCCcccccccCccchhcccc---ccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecc
Q 013130 81 GRLSGQRL-ENNRAGERVAVDSRKRNPADFALWKA---AKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 156 (449)
Q Consensus 81 g~ls~~~l-~~~~~g~~~~~~~~k~~~~Df~lwk~---~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~Gk 156 (449)
|+||++++ +++..|+|++++..|+||.||+|||+ ..+++|+|+||||.||||||||||+|+.+|||.++|||+||+
T Consensus 182 G~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~ 261 (501)
T 3sp1_A 182 GEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGV 261 (501)
T ss_dssp TTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEG
T ss_pred cccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeecc
Confidence 99999999 89999999988889999999999998 346889999999999999999999999999999999999999
Q ss_pred cCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhcCcCCCcccCHH
Q 013130 157 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 235 (449)
Q Consensus 157 Dli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~~ 235 (449)
||+||||+|||||++|++++||+++|+|+|||+++|+|||||+||||+|.+++++ ||+|++||||++.+|++|++||++
T Consensus 262 DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~ 341 (501)
T 3sp1_A 262 DHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLD 341 (501)
T ss_dssp GGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHH
T ss_pred ccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 013130 236 QLDSASDA----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 311 (449)
Q Consensus 236 ~l~~~~~~----l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N 311 (449)
.|.++.+. +.+|++.+..+............ ...+ ...+..+.+.|.+||+|||||+.|++. |+++++.+|
T Consensus 342 ~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~~~~ 416 (501)
T 3sp1_A 342 NLQASKIARENLINKLSYFYESLDPVDLNTLNKDL-KNFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIKSDN 416 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCT-TSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHCSS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccc-cchh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHhc
Confidence 99999999 66776665443111100000000 0011 123456788999999999999999999 999999875
Q ss_pred HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCC
Q 013130 312 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNK 391 (449)
Q Consensus 312 ~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~K 391 (449)
+ . . .. +...+..++.+|||.+. . .. +... .......+++|+.||++|++||++|
T Consensus 417 --~---~-----~------~~---~~~~~~~~~~vlGl~~~-~--~~---~~~~-~~~~~~~~~~i~~li~~R~~ar~~k 470 (501)
T 3sp1_A 417 --L---S-----F------VS---KLRLAFIFDEIMSLNLR-E--EI---LKNL-QNHDVVIDENMKALIEERRIAKCEK 470 (501)
T ss_dssp --S---C-----H------HH---HHHHHHHHHHHHCCCHH-H--HH---HHHH-TTSCCCCCHHHHHHHHHHHHHHHTT
T ss_pred --c---C-----H------HH---HHHHHHHHHHHcCCCcc-c--ch---hhcc-cccchhhHHHHHHHHHHHHHHHHcc
Confidence 1 1 0 01 11456677899998643 1 01 1000 0011234578999999999999999
Q ss_pred ChhHhHHHHHHcHhCCCEEEecCCCeEEEeC
Q 013130 392 DFSKSDQIRADLTRKGIALMDMGKETIWRPC 422 (449)
Q Consensus 392 df~~AD~IRd~L~~~Gi~i~D~~~gt~W~~~ 422 (449)
||++||+||++|.++||.|+|+++||+|++.
T Consensus 471 d~~~aD~iRd~L~~~Gi~l~D~~~g~~w~~~ 501 (501)
T 3sp1_A 471 NFKRADEIRDFFAKKGFVLVDTKEGTKVKRG 501 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCC-----------
T ss_pred CHHHHHHHHHHHHHCCcEEEEcCCCcEEEeC
Confidence 9999999999999999999999999999863
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=3.4e-89 Score=707.30 Aligned_cols=388 Identities=42% Similarity=0.702 Sum_probs=282.4
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 79 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~ 79 (449)
.||+++|+++|++|+++|++|++.|+++|++|||.+||.|+|+|+|++.|+++|++|+++|+||++ +|+||||+++|+.
T Consensus 72 ~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~ 151 (461)
T 1li5_A 72 DKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPT 151 (461)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccc
Confidence 389999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
||+++++.++++..|++++++..|+||.||+|||.+++|+|+|++|||+||||||+||++|+.+|||.++|||+||+||+
T Consensus 152 yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~ 231 (461)
T 1li5_A 152 YGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM 231 (461)
T ss_dssp TTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGT
T ss_pred cccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccC
Confidence 99999999988889999988888999999999999889999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHH
Q 013130 160 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS 239 (449)
Q Consensus 160 ~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~ 239 (449)
||||+|||||++|+.+.||+++|+|+|||+++|+|||||+||||+|.+++++||+|++|||+++++|++|++||++.|.+
T Consensus 232 fpH~~~~~aq~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~ 311 (461)
T 1li5_A 232 FPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ 311 (461)
T ss_dssp TTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHH
Confidence 99999999999999777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013130 240 ASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 319 (449)
Q Consensus 240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~p 319 (449)
+.+.+.++++.+..+ ... . .+ + .+..+.+.|.++|+|+||++.|++. |+++++.+|+|++. +
T Consensus 312 ~~~~l~rl~n~~~~~----~~~----~-~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~--~ 373 (461)
T 1li5_A 312 ARAALERLYTALRGT----DKT----V-AP-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE--D 373 (461)
T ss_dssp HHHHHHHHHHHHTTC----CTT----S-CC-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHHh----hcC----C-CH-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc--c
Confidence 999988888876432 110 0 11 2 2566788999999999999999999 99999999999975 2
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChhHhHHH
Q 013130 320 KQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQI 399 (449)
Q Consensus 320 w~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~I 399 (449)
. ..+..+...|..++.+|||... .....++ ... ....+..++|+.||++|++||++|||++||+|
T Consensus 374 ---~-------~~~~~~~~~~~~~~~~lG~~~~-~~~~~~~---~~~-~~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~i 438 (461)
T 1li5_A 374 ---M-------AAANAMASHLRKLSAVLGLLEQ-EPEAFLQ---SGA-QADDSEVAEIEALIQQRLDARKAKDWAAADAA 438 (461)
T ss_dssp ---H-------HHHHHHHHHHHHHHTTTTCSCS-CHHHHC----------------------------------------
T ss_pred ---H-------HHHHHHHHHHHHHHHHcCCCcc-Chhhhhh---ccc-ccccccHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 0 1344455778889999998542 2111110 000 00011114588999999999999999999999
Q ss_pred HHHcHhCCCEEEecCCCeEEEe
Q 013130 400 RADLTRKGIALMDMGKETIWRP 421 (449)
Q Consensus 400 Rd~L~~~Gi~i~D~~~gt~W~~ 421 (449)
|++|.++||.|+|+|+||+|++
T Consensus 439 R~~l~~~gi~~~d~~~g~~w~~ 460 (461)
T 1li5_A 439 RDRLNEMGIVLEDGPQGTTWRR 460 (461)
T ss_dssp ----------------------
T ss_pred HHHHHHCCCEEEEcCCCcEEEe
Confidence 9999999999999999999985
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.7e-67 Score=539.46 Aligned_cols=292 Identities=32% Similarity=0.505 Sum_probs=252.9
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeec----CcEEEeCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEK 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~----g~~yf~~~~ 76 (449)
.||+.+|+++|++|+++|++|.+.|+++|++|||.++|.|+|+|+|++.|+++|++|+++|+||+++ +++||++++
T Consensus 89 ~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~ 168 (414)
T 3c8z_A 89 DPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA 168 (414)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh
Confidence 3899999999999999999999999999999999966999999999999999999999999999998 999999999
Q ss_pred CCccccccCcccccccCC--CC-Ccc-cccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEE
Q 013130 77 SPNYGRLSGQRLENNRAG--ER-VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 152 (449)
Q Consensus 77 ~~~yg~ls~~~l~~~~~g--~~-~~~-~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih 152 (449)
|++||++++.+++++..+ ++ ++. ...|++|.||++||...||+|+|++|||.|+||||+||++|+.+|||.|+|||
T Consensus 169 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~ 248 (414)
T 3c8z_A 169 TAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQ 248 (414)
T ss_dssp STTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEE
T ss_pred hhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEE
Confidence 999999998777665432 11 222 34689999999999888999999999999999999999999999999999999
Q ss_pred eecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHHHhhcCcCCCc
Q 013130 153 GGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPL 230 (449)
Q Consensus 153 ~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~ 230 (449)
+||+||+||||+||+||++|+++. ||+++|+|+|||+++|+|||||+||+|+|.+++++ ||+|++||||++++|++|+
T Consensus 249 ~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~ 328 (414)
T 3c8z_A 249 GGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDR 328 (414)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCB
T ss_pred EeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCC
Confidence 999999999999999999999664 89999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 013130 231 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 310 (449)
Q Consensus 231 ~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~ 310 (449)
+||++.+.++.+.+.+|+|.+.++ .. + .+..+.++|.++|+|+|+++.|++. |+++++.+
T Consensus 329 ~fs~~~l~~~~~~l~~l~n~~~~~----~~--------~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~ 388 (414)
T 3c8z_A 329 FWSNEVLDEANARLARWRSATALP----EA--------P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDA 388 (414)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSS----CB--------S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhc----cc--------h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHH
Confidence 999999999999988888876432 10 0 1246778899999889999999999 99999999
Q ss_pred HH
Q 013130 311 NS 312 (449)
Q Consensus 311 N~ 312 (449)
|+
T Consensus 389 n~ 390 (414)
T 3c8z_A 389 LS 390 (414)
T ss_dssp HH
T ss_pred Hh
Confidence 98
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2e-54 Score=453.98 Aligned_cols=348 Identities=17% Similarity=0.203 Sum_probs=255.1
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-- 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-- 76 (449)
+||+.+|+++|++|+++|++|.+.|+++|++|||.+ |.|+|||+ |++.|+++|.+|+++|+||+++..++||+.+
T Consensus 56 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~ 134 (497)
T 2csx_A 56 LKIQKKAEELGISPKELVDRNAERFKKLWEFLKIEY-TKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEE 134 (497)
T ss_dssp HHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcC-CCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCe
Confidence 489999999999999999999999999999999986 89999998 9999999999999999999998777777653
Q ss_pred CCccccc--------cCcccccccCCC---------------------CCcccccccCccchhccccccCCC-----Ccc
Q 013130 77 SPNYGRL--------SGQRLENNRAGE---------------------RVAVDSRKRNPADFALWKAAKAGE-----PSW 122 (449)
Q Consensus 77 ~~~yg~l--------s~~~l~~~~~g~---------------------~~~~~~~k~~~~Df~lwk~~~~~~-----~~w 122 (449)
|..++++ ++..++....+. .+.....++...||+ .....+ |+|
T Consensus 135 ~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l---~~~~~Dw~isR~~~ 211 (497)
T 2csx_A 135 FKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFV---KQGLKDLSVTRPRS 211 (497)
T ss_dssp -----------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHH---HHCCCCEECEEETT
T ss_pred EccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHH---hcCCccccccccCC
Confidence 5444444 333332211110 000000111111221 111112 457
Q ss_pred cCCCCCCCC---Cchhh---------hHHHHH---hhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeee
Q 013130 123 DSPWGPGRP---GWHIE---------CSAMSA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 187 (449)
Q Consensus 123 ~s~WG~grP---gWh~e---------~~~~~~---~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~ 187 (449)
+++||.|+| +||++ |++|.. +|| |+|+|++|+|+++|||++|+|++++++.++|.++ +||||
T Consensus 212 ~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~-~~~G~ 288 (497)
T 2csx_A 212 RVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYELPKKV-FAHGW 288 (497)
T ss_dssp TCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECC
T ss_pred CCCCceecCCCCCceEEEecccchhhcccCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCCCcEE-EECcE
Confidence 889999999 78887 887755 677 8999999999999999999999999865555555 78899
Q ss_pred eeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHH-----HHHHHHHHHHHHHhcCCc
Q 013130 188 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCEVALSPF 261 (449)
Q Consensus 188 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~-----l~~l~~~~~~~~~~~~~~ 261 (449)
|+++|+|||||+||+|+|.+++++||+|++|||+++ +++++|++||++.+..+.+. ++|+++|+..+......
T Consensus 289 v~~~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~- 367 (497)
T 2csx_A 289 WTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG- 367 (497)
T ss_dssp EESSSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST-
T ss_pred EEeCCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999999999999999999999999999999999998 69999999999999887643 56666665443322111
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh-h-hhhHHHHHHHHHH
Q 013130 262 QEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-Q-LSLIESLRKIENE 339 (449)
Q Consensus 262 ~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~-~-~~~~~~l~~~~~~ 339 (449)
...+...|.+++..+..+.+.+.++| ++|+++.|++. |++|++.+|.|++..+||.+.++ + ......+..+.+.
T Consensus 368 --~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 443 (497)
T 2csx_A 368 --GEVSGARDEEYAKIAQESIKNYENYM-EKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDG 443 (497)
T ss_dssp --TCBCCCCCTTHHHHHHHHHHHHHHHH-TTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHH
Confidence 01113467899999999999999999 99999999999 99999999999999999964332 1 2233566777778
Q ss_pred HHHHHHHhc-CCCCCChhHHHHH
Q 013130 340 VKEVLRILG-LLPPGAYSEVLQQ 361 (449)
Q Consensus 340 l~~~l~ilg-i~~~~~~~~~~~~ 361 (449)
|+.++.+|. |+|. .+++++++
T Consensus 444 l~~~~~ll~P~~P~-~aeei~~~ 465 (497)
T 2csx_A 444 LFVLTHLLYPITPN-KMKEALQM 465 (497)
T ss_dssp HHHHHHHHTTTSHH-HHHHHHHH
T ss_pred HHHHHHHhcCccCH-HHHHHHHH
Confidence 888888886 5665 44444433
No 6
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1.7e-53 Score=451.62 Aligned_cols=353 Identities=16% Similarity=0.150 Sum_probs=264.2
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+++|+++|++|+|+|++|++.|+++|++|||++ |.|.||++ |++.|+++|.+|+++|+||++.+.||||+++-.
T Consensus 60 ~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 138 (542)
T 3u1f_A 60 QKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSI-DYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDES 138 (542)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCC-SEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc-CcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcc
Confidence 489999999999999999999999999999999997 99999985 999999999999999999999999999998631
Q ss_pred ------------ccccccCcccccccCCCCCcccc------------------cccCccchhccccc------------c
Q 013130 79 ------------NYGRLSGQRLENNRAGERVAVDS------------------RKRNPADFALWKAA------------K 116 (449)
Q Consensus 79 ------------~yg~ls~~~l~~~~~g~~~~~~~------------------~k~~~~Df~lwk~~------------~ 116 (449)
.||...+ ....+|.+++... .+.++ ++..|... +
T Consensus 139 ~l~d~~v~~~~~~~g~~~~---~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~ 214 (542)
T 3u1f_A 139 FLTPQNITDGVDKDGNPCK---VSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLP 214 (542)
T ss_dssp EECGGGEEEEECTTSCEEE---EETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCC
T ss_pred cchhhhhhccccccCcccc---ccCCCCCcceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhcccc
Confidence 2232111 0112344333211 01111 22221110 0
Q ss_pred CCC----CcccCCCCCCCCC--------chhhhHHHHH--------------------hhcCCCccEEeecccCcCchhH
Q 013130 117 AGE----PSWDSPWGPGRPG--------WHIECSAMSA--------------------HYLSSKFDIHGGGIDLIFPHHE 164 (449)
Q Consensus 117 ~~~----~~w~s~WG~grPg--------Wh~e~~~~~~--------------------~~~g~~~Dih~~GkDli~~H~~ 164 (449)
+.. .+|..+||+++|+ |+........ .+..+|.|+|++|+||+|||++
T Consensus 215 Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~ 294 (542)
T 3u1f_A 215 DLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAI 294 (542)
T ss_dssp CEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHT
T ss_pred ccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccc
Confidence 101 2355679999998 6554332211 1123589999999999999999
Q ss_pred HHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHH
Q 013130 165 NEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA 243 (449)
Q Consensus 165 ~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~ 243 (449)
+|+|++++.+.+++ +.++|||||+.+|+|||||+||||+|.+++++||+|++||||++ +++++|++||++.+.++.|.
T Consensus 295 ~~~a~l~~~g~~~~-~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~ 373 (542)
T 3u1f_A 295 YWPAFLLSAGLPLP-KKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNG 373 (542)
T ss_dssp HHHHHHHHHTCCCC-SCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHH
T ss_pred hhHHHHHhhccccc-ceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhh
Confidence 99999999865544 55588899999999999999999999999999999999999998 59999999999999987653
Q ss_pred -----HHHHHHHHHHHHHhcCCccc-CCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhh
Q 013130 244 -----VFYIYQTLQDCEVALSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML 317 (449)
Q Consensus 244 -----l~~l~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~ 317 (449)
++|+.+|+..+.....+..+ .......|+++++.++.+.+.+.++| ++|++++|++. |++|++.+|.|++..
T Consensus 374 ~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~ 451 (542)
T 3u1f_A 374 ELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDM 451 (542)
T ss_dssp TTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 45555544322111111111 11123357899999999999999999 99999999999 999999999999999
Q ss_pred cccCchhhhh-hhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 318 KKKQPKQQQL-SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 318 ~pw~~~~~~~-~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
+||.+.+++. .+..+++.+++.|+.++.+|. |+|. .+++++++|
T Consensus 452 ~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~-~aeei~~~L 497 (542)
T 3u1f_A 452 APWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPR-KSVVIFDML 497 (542)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHH
T ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHC
Confidence 9998666543 345567777778887887776 6776 566666555
No 7
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=9e-53 Score=457.00 Aligned_cols=359 Identities=15% Similarity=0.113 Sum_probs=277.0
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
+||+.+|+++|++|+++|++|++.|+++|++|||++ |.|+|||+ |++.++++|.+|+++|+||++.+.+|||+++.
T Consensus 54 ~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lgis~-D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~t 132 (722)
T 1rqg_A 54 TPISFRALKEGRSPREIVDEFHEQIKITFQRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKM 132 (722)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTB
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCc
Confidence 489999999999999999999999999999999987 99999997 99999999999999999999999999999874
Q ss_pred -----------------Cccccc---cCccc--ccc------cCCCCCcccc----------cccCccchh---ccccc-
Q 013130 78 -----------------PNYGRL---SGQRL--ENN------RAGERVAVDS----------RKRNPADFA---LWKAA- 115 (449)
Q Consensus 78 -----------------~~yg~l---s~~~l--~~~------~~g~~~~~~~----------~k~~~~Df~---lwk~~- 115 (449)
+.||.+ +|..+ .++ ++|++++... +++...+++ .|+..
T Consensus 133 fl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~ 212 (722)
T 1rqg_A 133 FLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNV 212 (722)
T ss_dssp CCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHH
T ss_pred CcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHH
Confidence 134543 22222 122 3566554321 111112222 25433
Q ss_pred --------cCCCCcc----cCCCCCCCC----Cch-----------hhhHHHHH-------------hhcC--CC--ccE
Q 013130 116 --------KAGEPSW----DSPWGPGRP----GWH-----------IECSAMSA-------------HYLS--SK--FDI 151 (449)
Q Consensus 116 --------~~~~~~w----~s~WG~grP----gWh-----------~e~~~~~~-------------~~~g--~~--~Di 151 (449)
+.|.+.| +++||+++| ||+ ++|.+++. .||+ .+ .++
T Consensus 213 ~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~ 292 (722)
T 1rqg_A 213 KNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVI 292 (722)
T ss_dssp HHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEE
T ss_pred HHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeE
Confidence 2454445 889999999 576 55554432 4665 32 459
Q ss_pred EeecccCcCchhHHHHHHHhhcc---------CCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHh
Q 013130 152 HGGGIDLIFPHHENEIAQSCAAC---------QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 222 (449)
Q Consensus 152 h~~GkDli~~H~~~~~a~~~a~~---------~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 222 (449)
|++|+||++||+.+|||++++++ +.++++.|+|||||+++|+|||||+||||+|.+++++||+|++||||+
T Consensus 293 h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll 372 (722)
T 1rqg_A 293 HFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLT 372 (722)
T ss_dssp EEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHH
T ss_pred EEccccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHH
Confidence 99999999999999999999986 333335668999999999999999999999999999999999999999
Q ss_pred hc-CcCCCcccCHHHHHHHHH-----HHHHHHHHHHHH-HHhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccC
Q 013130 223 SA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQDC-EVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLN 294 (449)
Q Consensus 223 ~~-~~~~d~~fs~~~l~~~~~-----~l~~l~~~~~~~-~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~ 294 (449)
+. ++++|++||++.+.++.| .++|+.+|+..+ ..++.+..+. ......|.+++..++.+.+.+.++| ++|+
T Consensus 373 ~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~ 451 (722)
T 1rqg_A 373 TIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYR 451 (722)
T ss_dssp HTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred hcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 96 999999999999998765 467877775443 3334332211 1112346789999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 295 ~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++.|++. |++|++.+|.|++..+||.+.+.+ .....+++.+.+.++.++.+|. |+|. .+++++++|+
T Consensus 452 f~~A~~~-i~~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L~ 520 (722)
T 1rqg_A 452 FKDALKR-VMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLN 520 (722)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHcC
Confidence 9999999 999999999999999999754432 2234567777788888888886 6776 6777777764
No 8
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.2e-52 Score=440.84 Aligned_cols=346 Identities=17% Similarity=0.155 Sum_probs=261.1
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-- 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-- 76 (449)
+||+++|+++|++|+++|++|.+.|+++|++|||.+ |.|+|||+ |++.|+++|++|+++|+||++++.++||+.+
T Consensus 54 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~ 132 (500)
T 2d5b_A 54 ETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAY-DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCER 132 (500)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcC-CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCc
Confidence 389999999999999999999999999999999986 89999998 9999999999999999999998788887765
Q ss_pred CCccccc-------cCcccccccCCCC-Ccc--------cccccCccchhccccc--------cCC--C--Cc---ccCC
Q 013130 77 SPNYGRL-------SGQRLENNRAGER-VAV--------DSRKRNPADFALWKAA--------KAG--E--PS---WDSP 125 (449)
Q Consensus 77 ~~~yg~l-------s~~~l~~~~~g~~-~~~--------~~~k~~~~Df~lwk~~--------~~~--~--~~---w~s~ 125 (449)
|..++++ ++..++....+.- +.+ +..++++ +|+.|+.. +++ + ++ |+++
T Consensus 133 ~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~ 211 (500)
T 2d5b_A 133 FYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVP 211 (500)
T ss_dssp ECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCC
T ss_pred ccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeeccccccccc
Confidence 4444443 3332221111100 000 0112233 44433211 012 1 23 4789
Q ss_pred CCCCCC---------------------CchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEe
Q 013130 126 WGPGRP---------------------GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 184 (449)
Q Consensus 126 WG~grP---------------------gWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h 184 (449)
||.|+| |||++|+ +.++| |.|||++|+||++|||++|+|++++++.+++. .|+|
T Consensus 212 WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~-~v~~ 286 (500)
T 2d5b_A 212 WGIPLPWDENHVTFVWFDALLNYVSALDYPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYR-HLNV 286 (500)
T ss_dssp SSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCS-EEEE
T ss_pred CccccCCCCCCeeEEccccchhhHHHcCCCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCCCc-EEEE
Confidence 999999 8999986 56677 77999999999999999999999998555554 5588
Q ss_pred eeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH-----HHHHHHHHHHHHH-H
Q 013130 185 NGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD-----AVFYIYQTLQDCE-V 256 (449)
Q Consensus 185 ~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~-----~l~~l~~~~~~~~-~ 256 (449)
||||+. +|+|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.++.+ .++|+.+++..+. .
T Consensus 287 ~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~ 366 (500)
T 2d5b_A 287 GGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR 366 (500)
T ss_dssp ECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred CceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999 999999999999999999999999999999998 6999999999999988764 2456666543322 2
Q ss_pred hcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhh-hhHHHHHH
Q 013130 257 ALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL-SLIESLRK 335 (449)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~-~~~~~l~~ 335 (449)
...+. .+...+.+++..+..+.+.+.++| ++|+++.|++. |++|++.+|.|++..+||.+.++.. .....+..
T Consensus 367 ~~~~~----~~~~~~~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~ 440 (500)
T 2d5b_A 367 FAEGR----IPEPVAGEELAEGTGLAGRLRPLV-RELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYR 440 (500)
T ss_dssp HSTTB----CCCCCCCGGGGGGGGHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHH
T ss_pred hcCCC----CCchhHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHH
Confidence 22211 111123678888889999999999 99999999999 9999999999999999996444321 23345666
Q ss_pred HHHHHHHHHHHhc-CCCCCChhHHHH
Q 013130 336 IENEVKEVLRILG-LLPPGAYSEVLQ 360 (449)
Q Consensus 336 ~~~~l~~~l~ilg-i~~~~~~~~~~~ 360 (449)
+.+.|+.++.+|. |+|. .++++++
T Consensus 441 l~~~l~~~~~ll~P~~P~-~aeei~~ 465 (500)
T 2d5b_A 441 VVEGLRIASILLTPAMPD-KMAELRR 465 (500)
T ss_dssp HHHHHHHHHHHHTTTSHH-HHHHHHH
T ss_pred HHHHHHHHHHHhhCcccH-HHHHHHH
Confidence 7777777777776 5554 3444433
No 9
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.7e-52 Score=439.38 Aligned_cols=354 Identities=18% Similarity=0.163 Sum_probs=264.7
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-- 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-- 76 (449)
+||+++|+++|++|+++|++|.+.|+++|++|||.+ |.|+|||+ |++.|+++|.+|+++|+||++++.||||+++
T Consensus 63 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t 141 (524)
T 2x1l_A 63 QKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISF-DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDER 141 (524)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC-CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCc
Confidence 389999999999999999999999999999999986 89999998 9999999999999999999999999999987
Q ss_pred CCccccc------------cCcccccccC--------------------C-CCCcccccccCccchhccccccCCCCccc
Q 013130 77 SPNYGRL------------SGQRLENNRA--------------------G-ERVAVDSRKRNPADFALWKAAKAGEPSWD 123 (449)
Q Consensus 77 ~~~yg~l------------s~~~l~~~~~--------------------g-~~~~~~~~k~~~~Df~lwk~~~~~~~~w~ 123 (449)
|..++++ ++..++.... + ..+..+..++.+.||++ ...++-.+++.
T Consensus 142 ~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~-~~l~Dw~iSRq 220 (524)
T 2x1l_A 142 FFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVS-GGLKDLSISRT 220 (524)
T ss_dssp EECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHT-TCCCCEECEES
T ss_pred cccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHH-cCCcccceECC
Confidence 5555442 3322211000 0 00000011111122221 00011112332
Q ss_pred -CCCCCCCCC--------chh-------------hhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcE
Q 013130 124 -SPWGPGRPG--------WHI-------------ECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181 (449)
Q Consensus 124 -s~WG~grPg--------Wh~-------------e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~ 181 (449)
.+||.++|+ |+. +|++++..+| |+|||++|+|++||||++|+|++++++.++|.++
T Consensus 221 r~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v 298 (524)
T 2x1l_A 221 TFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRI 298 (524)
T ss_dssp SCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE
T ss_pred CCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEE
Confidence 357776663 432 4555666777 7999999999999999999999999877778888
Q ss_pred EEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHH-----HHHHHHHHHHHH
Q 013130 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCE 255 (449)
Q Consensus 182 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~-----l~~l~~~~~~~~ 255 (449)
|+| |||+.+|+|||||+||||+|.|++++||+|++|||+++ +++++|++||++.+.++.+. ++|+.+++..+.
T Consensus 299 ~~h-G~v~~~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~ 377 (524)
T 2x1l_A 299 FAH-GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMV 377 (524)
T ss_dssp EEE-CCEEECSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_pred EEC-cEEEeCCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 99999999999999999999999999999999999999 79999999999999988754 677777654432
Q ss_pred -HhcCCccc-CCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh----h-hh
Q 013130 256 -VALSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ----Q-LS 328 (449)
Q Consensus 256 -~~~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~----~-~~ 328 (449)
..+.+..+ .......|.+++..+..+.+.+.++| ++|+++.|++. |++|++.+|.|++..+||.+.+. + ..
T Consensus 378 ~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~ 455 (524)
T 2x1l_A 378 AKNLGAAVPDPGEFTDEDTALLAAADALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQR 455 (524)
T ss_dssp HHHSTTBCCCCCCCCHHHHHHHHHHHTHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHH
T ss_pred HHhcCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHH
Confidence 22222111 11112346788999999999999999 99999999999 99999999999999999964432 1 22
Q ss_pred hHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 329 LIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 329 ~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
...+++.+.+.++.++.+|. |+|. .++++++++
T Consensus 456 ~~~~l~~l~~~l~~~~~ll~P~~P~-~aeei~~~L 489 (524)
T 2x1l_A 456 FRTVLYTTLEVVRIASLLLQPVMPE-STAKLLDLL 489 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHc
Confidence 33456677777887888886 5665 455554443
No 10
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=6.8e-51 Score=432.13 Aligned_cols=353 Identities=16% Similarity=0.166 Sum_probs=266.1
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|.+.|++|+++|++|.+.|+++|+.|||.+ |.|+|||+ |.+.|+++|++|.++|+||++++.+|||+++..
T Consensus 77 ~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~ 155 (564)
T 3kfl_A 77 QKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDM-NYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDES 155 (564)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTE
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC-CccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCC
Confidence 489999999999999999999999999999999998 88999995 999999999999999999999999999998853
Q ss_pred ccccccCccccc------------ccCCCCCcccc------------------cccCccchhc----------cccc--c
Q 013130 79 NYGRLSGQRLEN------------NRAGERVAVDS------------------RKRNPADFAL----------WKAA--K 116 (449)
Q Consensus 79 ~yg~ls~~~l~~------------~~~g~~~~~~~------------------~k~~~~Df~l----------wk~~--~ 116 (449)
.|.. ..+.+ ..+|.+++... .+.++ +|.. |-.. +
T Consensus 156 ~l~~---~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~ 231 (564)
T 3kfl_A 156 FLTA---QNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLF 231 (564)
T ss_dssp EECG---GGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCC
T ss_pred CCCH---HHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCC
Confidence 2221 00000 01344433211 11222 2221 1110 1
Q ss_pred CCCCcc----cCCCCCCCCC--------chhhhHHHHH--hh-------------c----CCCccEEeecccCcCchhHH
Q 013130 117 AGEPSW----DSPWGPGRPG--------WHIECSAMSA--HY-------------L----SSKFDIHGGGIDLIFPHHEN 165 (449)
Q Consensus 117 ~~~~~w----~s~WG~grPg--------Wh~e~~~~~~--~~-------------~----g~~~Dih~~GkDli~~H~~~ 165 (449)
+-.+++ +..||+++|| |++....++. .| | .+|.|+|++|+||++||+.+
T Consensus 232 D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~ 311 (564)
T 3kfl_A 232 DLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIY 311 (564)
T ss_dssp CEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTH
T ss_pred CccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHH
Confidence 111456 5689999997 7765543321 11 1 24789999999999999999
Q ss_pred HHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH--
Q 013130 166 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD-- 242 (449)
Q Consensus 166 ~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~-- 242 (449)
|||++++++.++|.++ ++||||+.+|+|||||+||||+|.+++++||+|++||||++ .++++|++|+++.+.++.|
T Consensus 312 wpa~L~a~g~~~~~~v-~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~ 390 (564)
T 3kfl_A 312 WPAFLMSAELPLPERL-VSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGE 390 (564)
T ss_dssp HHHHHHHTTCCCCSCE-EEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcEE-EEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHH
Confidence 9999999987788888 55699999999999999999999999999999999999999 6999999999999998765
Q ss_pred ---HHHHHHHHHHHHHHhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 013130 243 ---AVFYIYQTLQDCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 318 (449)
Q Consensus 243 ---~l~~l~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~ 318 (449)
.++|+.+|+..+..++.+..+. ......|.+++..+..+.+.+.++| ++|+++.|++. |++|++.+|+|++..+
T Consensus 391 l~~~l~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 391 LADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENA 468 (564)
T ss_dssp TTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcC
Confidence 3455555543222122222211 1112346889999999999999999 89999999999 9999999999999999
Q ss_pred ccCchhhhh-hhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 319 KKQPKQQQL-SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 319 pw~~~~~~~-~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
||.+.+.+. .+..++..+.+.|+.++.+|. |+|. .+++++++|
T Consensus 469 pW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~ae~i~~~L 513 (564)
T 3kfl_A 469 PWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQ-KAKEIMDAL 513 (564)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHHHHHHHc
Confidence 997554332 234566677777777777777 5665 455555444
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2.6e-49 Score=418.41 Aligned_cols=354 Identities=19% Similarity=0.194 Sum_probs=255.6
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|.+.|++|+++|++|.+.|+++|++|||.+ |.|+|||+ |++.|+++|++|.++|+||++++.+|||+++..
T Consensus 76 ~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~ 154 (536)
T 4dlp_A 76 IKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEA 154 (536)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCc
Confidence 389999999999999999999999999999999998 78999997 999999999999999999999999999998864
Q ss_pred ccccc------cCcccccccCCCCCcccc------------------cccCccchhc----------cccc--cCCCCcc
Q 013130 79 NYGRL------SGQRLENNRAGERVAVDS------------------RKRNPADFAL----------WKAA--KAGEPSW 122 (449)
Q Consensus 79 ~yg~l------s~~~l~~~~~g~~~~~~~------------------~k~~~~Df~l----------wk~~--~~~~~~w 122 (449)
.+..- .|... -.+|..++... .+.+| +|.. |-.. ++-.+++
T Consensus 155 ~l~~~~~~~~~~g~~c--~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~~~l~D~~ISR 231 (536)
T 4dlp_A 155 YYGEEETEVRADGVRY--GPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVKSGLKDLSISR 231 (536)
T ss_dssp EECGGGCEECTTSCEE--CTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHTCCCCEECEE
T ss_pred ccCHHHhhcCCCCCcc--cCCCCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHhcCCCccCCcc
Confidence 33221 01000 12344333211 11121 2211 1110 0111344
Q ss_pred -cCCCCCCCCC--------chhhhHHHHHh--h------c--CCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEE
Q 013130 123 -DSPWGPGRPG--------WHIECSAMSAH--Y------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 183 (449)
Q Consensus 123 -~s~WG~grPg--------Wh~e~~~~~~~--~------~--g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~ 183 (449)
+.+||+++|+ |+.....+... | + ++|.|+|++|+|+++||+.+||+++++++.++|.+++
T Consensus 232 ~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~- 310 (536)
T 4dlp_A 232 TTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVF- 310 (536)
T ss_dssp C--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEE-
T ss_pred CCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEE-
Confidence 3579999996 77655444321 1 0 2388999999999999999999999998777888885
Q ss_pred eeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH-----HHHHHHHHHHH-HHH
Q 013130 184 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD-----AVFYIYQTLQD-CEV 256 (449)
Q Consensus 184 h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~-----~l~~l~~~~~~-~~~ 256 (449)
+||||+.+|+|||||+||||+|.+++++||+|++|||+++ .++++|++|+++.+.+..| .++|+.+|+.. +..
T Consensus 311 ~hg~v~~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~ 390 (536)
T 4dlp_A 311 AHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAK 390 (536)
T ss_dssp EECCEEC------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred eeeeEeeCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5599999999999999999999999999999999999999 6999999999999988764 35676666433 334
Q ss_pred hcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhh-hhHHHHH
Q 013130 257 ALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL-SLIESLR 334 (449)
Q Consensus 257 ~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~-~~~~~l~ 334 (449)
.+.+..+. ......|+++++.+..+.+.+.++| ++|+++.|++. |++|+..+|.|++..+||.+.+.+. .+..++.
T Consensus 391 ~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~ 468 (536)
T 4dlp_A 391 NCEGKVPQPGAFSEADKAILDQADAALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLY 468 (536)
T ss_dssp HSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHH
T ss_pred hcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHH
Confidence 44333221 1123457899999999999999999 89999999999 9999999999999999997554332 2445677
Q ss_pred HHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 335 KIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 335 ~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
.+.+.|+.++.+|. |+|. .+++++++|
T Consensus 469 ~l~~~l~~~~~lL~P~~P~-~aeei~~~L 496 (536)
T 4dlp_A 469 VTAEVLRRVGIMVQPFIPQ-SAEKLLDIL 496 (536)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcccH-HHHHHHHHc
Confidence 77888888888887 5665 455554444
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=9e-47 Score=400.94 Aligned_cols=352 Identities=15% Similarity=0.133 Sum_probs=260.3
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt--~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~- 77 (449)
+||+.+|.+.|++|++++++|.+.|+++|++|||.+ |.|.||+ +|.+.|++++.+|.++|+||++++.+|||+.+.
T Consensus 69 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~ 147 (560)
T 3h99_A 69 TPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISY-DNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 147 (560)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcCCCC-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCc
Confidence 489999999999999999999999999999999997 8888888 488999999999999999999999999998763
Q ss_pred -----------Cccc------c--------ccCccccc---ccCCCCCcccc----------cccCccchh---------
Q 013130 78 -----------PNYG------R--------LSGQRLEN---NRAGERVAVDS----------RKRNPADFA--------- 110 (449)
Q Consensus 78 -----------~~yg------~--------ls~~~l~~---~~~g~~~~~~~----------~k~~~~Df~--------- 110 (449)
|.|| . +.+.++.+ ..+|.+++... .++...++.
T Consensus 148 ~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~ 227 (560)
T 3h99_A 148 FLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQV 227 (560)
T ss_dssp ECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHH
T ss_pred eecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHH
Confidence 1222 1 11111211 13455443211 000000000
Q ss_pred -----ccccc--cCCCCcccC-CCCCCCCC--------chhhhHHHH----------------HhhcCCCcc-----EEe
Q 013130 111 -----LWKAA--KAGEPSWDS-PWGPGRPG--------WHIECSAMS----------------AHYLSSKFD-----IHG 153 (449)
Q Consensus 111 -----lwk~~--~~~~~~w~s-~WG~grPg--------Wh~e~~~~~----------------~~~~g~~~D-----ih~ 153 (449)
-|-.. ++-.++++. .||+++|+ |+.....+. ..+| |.| +|+
T Consensus 228 ~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~w--p~~~~~~~~~~ 305 (560)
T 3h99_A 228 ANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYW--KKDSTAELYHF 305 (560)
T ss_dssp HHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH--BTTCCSEEEEE
T ss_pred HHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhC--cCCCCceeEEE
Confidence 01110 011134555 67999995 766554332 1234 566 999
Q ss_pred ecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhc-CcC-CCcc
Q 013130 154 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLN 231 (449)
Q Consensus 154 ~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~-~d~~ 231 (449)
+|+||++||+.+|||++++++.++|.++ +.||||+.+|+|||||+||||+|.|++++||+|++||||++. +.+ +|++
T Consensus 306 ~G~D~~~fh~~~~~a~l~~~g~~~p~~v-~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~ 384 (560)
T 3h99_A 306 IGKDIVYFLSLFWPAMLEGSNFRKPSNL-FVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDID 384 (560)
T ss_dssp EEGGGHHHHHTHHHHHHHHTTBCCCSEE-EEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEE
T ss_pred eccccchhHHHHHHHHHHhCCCCCCcEE-EEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999887766777 456999999999999999999999999999999999999985 666 8999
Q ss_pred cCHHHHHHHHH-----HHHHHHHHHHHH-HHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 013130 232 YSVLQLDSASD-----AVFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 305 (449)
Q Consensus 232 fs~~~l~~~~~-----~l~~l~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~ 305 (449)
|+++.+.+..+ .++|+.+|+..+ ...+.+..+ ....|.+++..++.+.+.+.++| ++|+++.|++. |++
T Consensus 385 f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~---~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~ 459 (560)
T 3h99_A 385 LNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLA---SELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMA 459 (560)
T ss_dssp ECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCC---SSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHH
Confidence 99999987653 245665554332 233322211 13468899999999999999999 89999999999 999
Q ss_pred HHHHHHHHHhhhcccCchhh---hhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 306 ALKFINSSLNMLKKKQPKQQ---QLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 306 l~~~~N~yi~~~~pw~~~~~---~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
|+..+|+|++..+||.+.++ ...+..++.++..+|+.++.+|. |+|. .+++++++|
T Consensus 460 l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~L 519 (560)
T 3h99_A 460 LADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPK-LTERAEAFL 519 (560)
T ss_dssp HHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHc
Confidence 99999999999999964432 12244566677788888899988 5665 445444443
No 13
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.8e-38 Score=349.19 Aligned_cols=209 Identities=22% Similarity=0.241 Sum_probs=175.1
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhh-
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS- 223 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~- 223 (449)
+|.|+|++|+||+|||+.+.++++.++.+. ||.++|+| |+++ .+|+|||||+||||+|.+++++||+|++||||++
T Consensus 480 ~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~ 558 (862)
T 1gax_A 480 YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYL 558 (862)
T ss_dssp CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEE-CCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHH
T ss_pred CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEe-eeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence 489999999999999999999999988775 78999776 8887 6999999999999999999999999999999998
Q ss_pred cCcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 013130 224 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 302 (449)
Q Consensus 224 ~~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~ 302 (449)
+++++|++|+++.+..+.+.+.+++|.++++...+.++.+. ......|+++++.++.+.+.+.++| ++|+++.|++.
T Consensus 559 ~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~- 636 (862)
T 1gax_A 559 ATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE- 636 (862)
T ss_dssp CCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH-
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-
Confidence 49999999999999999999999999887766555443211 1123356899999999999999999 99999999999
Q ss_pred HHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 303 FQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 303 l~~l~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|++|+ ..+|.|++..+||. ... ......++...|..++.+|. |+|. .++++++.+.
T Consensus 637 l~~f~~~~~~n~Yie~~k~~l-~~~---~~~~~~~l~~~l~~~~~lL~P~~P~-~aEeiw~~L~ 695 (862)
T 1gax_A 637 VYELVWSEFCDWYLEAAKPAL-KAG---NAHTLRTLEEVLAVLLKLLHPMMPF-LTSELYQALT 695 (862)
T ss_dssp HHHHHHHHTTTTHHHHHHHHH-HTT---BHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHcchhh-hcc---HHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcC
Confidence 99998 47999999999984 211 12344566677888888887 6776 6788888775
No 14
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.8e-38 Score=337.92 Aligned_cols=325 Identities=11% Similarity=0.024 Sum_probs=233.9
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhhCCCCCCCcccccccc--HHHHHHHHHHHHHcCCeE-----eecCcEEEeCCCCCcc
Q 013130 8 NDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNY 80 (449)
Q Consensus 8 ~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h--~~~v~~~i~~L~~~G~aY-----~~~g~~yf~~~~~~~y 80 (449)
.+.|. ++++|+.+.+.|+++|++|||.+ |.|+|+|++ .+.|++++++|.++|+|| +.+|.+||+++.|...
T Consensus 207 ~e~g~-~~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~ 284 (592)
T 1iq0_A 207 LERGE-LREEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPG 284 (592)
T ss_dssp HHTTT-THHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCS
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCC
Confidence 55666 49999999999999999999998 999999985 889999999999999999 7789999999876321
Q ss_pred ccccCcccccccCCCCCcccccccCccch--hccc-------cccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccE
Q 013130 81 GRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK-------AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDI 151 (449)
Q Consensus 81 g~ls~~~l~~~~~g~~~~~~~~k~~~~Df--~lwk-------~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Di 151 (449)
..+....+ ....|... + ..+|+ ++|| ..+ +.|.+||| |||||++|++|....++..++|
T Consensus 285 ~~l~~~vi-~ksdG~~~----Y--~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~--r~~w~~~g~~~~~~~~~~~iyV 352 (592)
T 1iq0_A 285 LEDPFFVL-LRSNGTAT----Y--YAKDIAFQFWKMGILEGLRFR---PYENPYYP--GLRTSAPEGEAYTPKAEETINV 352 (592)
T ss_dssp CSCCEEEE-ECTTSCBC----H--HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT--TCEEEEEEEEECCCCCSEEEEE
T ss_pred CCCCceEE-EecCCceE----E--ecchHHHHHHHhhhhhhhhhh---hhhcCcch--hhcccccCcccCCCCCCEEEEE
Confidence 11110100 00111110 0 13465 7785 322 35899997 8999999999975566666788
Q ss_pred EeecccCcCchhHHHHHHHhhccCCCC-CcEEEee--eeeeeCCccccccCCCccCHHHHHHh-----------------
Q 013130 152 HGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLGNFFTIRQITER----------------- 211 (449)
Q Consensus 152 h~~GkDli~~H~~~~~a~~~a~~~~~~-~~~~~h~--g~l~~~G~KMSKSlGN~i~~~dll~~----------------- 211 (449)
|+++.+.-|+++ .+.+.+++. ++ +..|.|. |||+++|+|||||+||||++.|+++.
T Consensus 353 ~g~~h~~~~~~~---~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~ 428 (592)
T 1iq0_A 353 VDVRQSHPQALV---RAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHP 428 (592)
T ss_dssp EESSSCCCHHHH---HHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred EeccHHHHHHHH---HHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 876655433333 233444443 33 3334555 88999999999999999999999999
Q ss_pred --------cChhHHHHHHhhcCcCCCcccCHHHHHHHHH----HHHHHHHHHHHHHHhcC-Cccc-CCCCCCCChhHHHH
Q 013130 212 --------YHPLALRHFLISAHYRSPLNYSVLQLDSASD----AVFYIYQTLQDCEVALS-PFQE-HGKTARINPAAEDC 277 (449)
Q Consensus 212 --------yg~D~lR~~ll~~~~~~d~~fs~~~l~~~~~----~l~~l~~~~~~~~~~~~-~~~~-~~~~~~~d~~l~~~ 277 (449)
||+|++|||+|+.++++|++|+++.+.+..+ .+++.+.|+..+..... ...+ .....+.+..+...
T Consensus 429 ~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~ 508 (592)
T 1iq0_A 429 DKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALD 508 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHH
T ss_pred cHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHH
Confidence 9999999999999999999999999987754 34444555544332211 1000 00011123457777
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcc-----cCchhhh---hhhHHHHHHHHHHHHHHHHHhcC
Q 013130 278 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK-----KQPKQQQ---LSLIESLRKIENEVKEVLRILGL 349 (449)
Q Consensus 278 l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~p-----w~~~~~~---~~~~~~l~~~~~~l~~~l~ilgi 349 (449)
+..+.+.+.+++ ++++++.++.. ++++++.+|+|++.++| |-+.++. .++..++.++..+|...+.+|||
T Consensus 509 l~~~~~~v~~a~-~~~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi 586 (592)
T 1iq0_A 509 LLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586 (592)
T ss_dssp HTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888999999999 99999999999 99999999999999966 5433322 23666778899999999999999
Q ss_pred CCC
Q 013130 350 LPP 352 (449)
Q Consensus 350 ~~~ 352 (449)
.+.
T Consensus 587 ~~~ 589 (592)
T 1iq0_A 587 PAP 589 (592)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 15
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=2.6e-36 Score=334.49 Aligned_cols=213 Identities=18% Similarity=0.139 Sum_probs=172.2
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeee-CCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+|++++|+....++++++.+. ||.++++| |||+. +|+|||||+||||+|.+++++||+|++|||++++
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~ 625 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST 625 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS
T ss_pred CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhcc
Confidence 489999999999998888888888887764 78888665 99996 9999999999999999999999999999999999
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------CCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE------HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 298 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~------~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~a 298 (449)
+|++|++||++.+..+.+.+.+|+|.++++...+..+.+ .......|++++..++.+.+++.++| ++|+++.|
T Consensus 626 ~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a 704 (917)
T 1ffy_A 626 DYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNI 704 (917)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHH
Confidence 999999999999999888899999998887766554321 01112356789999999999999999 99999999
Q ss_pred HHHHHHHHHH--HHHHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 299 LTGAFQDALK--FINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 299 l~~~l~~l~~--~~N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
++. |++|+. .+|.|++..+||.-. +++..+.....++...+..++.+|. |+|. .++++++.+.
T Consensus 705 ~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~-~aEeiw~~l~ 772 (917)
T 1ffy_A 705 YQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-TAEEVWSHTP 772 (917)
T ss_dssp HHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHTTST
T ss_pred HHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHcc
Confidence 999 999998 679999999986311 1122223333445566677788887 5665 6677776664
No 16
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=6.3e-37 Score=337.88 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=169.6
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
+|.|+|++|+||+|||+.+..+++.++.+. ||.++|+| |+++ .+|+|||||+||||+|.+++++||+|++||||++.
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~ 621 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVS 621 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhC
Confidence 489999999999999999999999998775 88999877 7766 59999999999999999999999999999999995
Q ss_pred -CcCCCcccCHHHHHHH-HHHHHHHHHHHHHHHH--hcCCccc-C----CCCCCCChhHHHHHHHHHHHHHHHHHhccCH
Q 013130 225 -HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEV--ALSPFQE-H----GKTARINPAAEDCINKLRDEFHARMSDDLNT 295 (449)
Q Consensus 225 -~~~~d~~fs~~~l~~~-~~~l~~l~~~~~~~~~--~~~~~~~-~----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~ 295 (449)
++++|++||++.+..+ .+.+.+|+|.++++.. .+.++.+ . ......|++++..++.+.+.+.++| ++|++
T Consensus 622 ~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f 700 (821)
T 1ile_A 622 APPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDP 700 (821)
T ss_dssp SCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCH
T ss_pred CCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCH
Confidence 7999999999999985 6667788887765431 2222211 0 1112346788999999999999999 89999
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhhc--ccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 296 SHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 296 ~~al~~~l~~l~--~~~N~yi~~~~--pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
+.|++. |++|+ ..+|.|++..+ ||...+. ..+...+.++...|+.++.+|. |+|. .++++++++.
T Consensus 701 ~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~~-~~r~~~~~~l~~~l~~~~~lLaP~~P~-~aeelw~~L~ 770 (821)
T 1ile_A 701 TTSARA-LRDFVVEDLSQWYVRRNRRRFWKNEDA-LDREAAYATLYEALVLVATLAAPFTPF-LAEVLWQNLV 770 (821)
T ss_dssp HHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTTT-SSTTHHHHHHHHHHHHHHHHHTTTSTT-HHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCc-HHHHHHHHHHHHHHHHHHHHcCCccch-HHHHHHHhcc
Confidence 999999 99999 78899998864 4763321 1122445566677888888887 6777 7888888875
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-35 Score=326.86 Aligned_cols=203 Identities=17% Similarity=0.161 Sum_probs=162.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-c
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 224 (449)
+|+|+|++|+||+||||.|+++++.++.+. ++++.|+|||||+.+|+|||||+||||+|.+++++||+|++|||+++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 489999999999999999999999998774 66678899999999999999999999999999999999999999985 7
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 304 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~ 304 (449)
++++|++||++.+..+.+.+.++++.+..+... . ..........|.+++..++.+.+.+.++| ++|+++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-~-~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-E-VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTC-C-CCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc-c-CcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999988888888887665321 1 10011112346789999999999999999 99999999986157
Q ss_pred HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHH
Q 013130 305 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQ 360 (449)
Q Consensus 305 ~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~ 360 (449)
.+++.+|.|++..++- + ......++...|+.++.+|. |+|. .++++++
T Consensus 759 ~l~~~~n~yi~~~k~~----~---~~~~~~~l~~~l~~l~~lLaP~~P~-~aEelw~ 807 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGR----D---DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWE 807 (810)
T ss_dssp HHHHHHHHHHHHTTTC----C---CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCc----c---hhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHH
Confidence 9999999999887631 1 11113456677788888886 5664 4444443
No 18
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-33 Score=315.16 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=168.6
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-c
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 224 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 224 (449)
+|+|+|++|+||+||||.|+++++.|+.+. ++++.|+|||||+.+|+|||||+||||+|.+++++||+|++||||++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 489999999999999999999999998774 66677799999999999999999999999999999999999999985 7
Q ss_pred CcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 013130 225 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 304 (449)
Q Consensus 225 ~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~ 304 (449)
++++|++|+++.+..+.+.+.++++.+.++... . ..........|+++++.++.+.+++.++| ++|+++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-E-VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS-C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC-C-CCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999987665321 1 00011112356899999999999999999 99999999986146
Q ss_pred HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 305 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 305 ~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
.+++.+|.|++..++-. ......++...|..++.+|. |+|. .++++++.++
T Consensus 759 ~l~~~~n~Yi~~~k~~~-------~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L~ 810 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGRD-------DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLG 810 (967)
T ss_dssp HHHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHSS
T ss_pred HHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhcC
Confidence 89999999998876311 11233456677888888887 6776 6788887764
No 19
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.1e-34 Score=309.95 Aligned_cols=313 Identities=14% Similarity=0.073 Sum_probs=227.1
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCcccccccc--HHHHHHHHHHHHHcCCeE-----eecCcEEEeCCCCCcccccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLS 84 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h--~~~v~~~i~~L~~~G~aY-----~~~g~~yf~~~~~~~yg~ls 84 (449)
..++++|+.+.+.|+++|++|||.+ |.|+|+|+| .+.|+++|++|.++|++| +.+|.+||++++|....++
T Consensus 240 ~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~- 317 (629)
T 2zue_A 240 LYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN- 317 (629)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc-
Confidence 5569999999999999999999998 999999986 889999999999999999 7789999999887321111
Q ss_pred CcccccccCCCCCcccccccC------ccch--hccc--------cccCC-CCcc-cCCCCCCCCCchhhhHHHHHhhcC
Q 013130 85 GQRLENNRAGERVAVDSRKRN------PADF--ALWK--------AAKAG-EPSW-DSPWGPGRPGWHIECSAMSAHYLS 146 (449)
Q Consensus 85 ~~~l~~~~~g~~~~~~~~k~~------~~Df--~lwk--------~~~~~-~~~w-~s~WG~grPgWh~e~~~~~~~~~g 146 (449)
|.++.. |.+ .+|+ ++|| ..++. ++.| .+|||+|+|| ....++
T Consensus 318 ---------~~~v~~---ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d 377 (629)
T 2zue_A 318 ---------PILVLR---RSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPN--------KFGNAN 377 (629)
T ss_dssp ---------CEEEEE---CTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTT--------SSCCCS
T ss_pred ---------CceEEE---ecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCC--------ccCCCC
Confidence 111111 222 3566 6685 33322 2334 5899999998 112344
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCC-CcEEEee--eeeeeCCccccccCC--CccCHHHHHHh----------
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLG--NFFTIRQITER---------- 211 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~-~~~~~h~--g~l~~~G~KMSKSlG--N~i~~~dll~~---------- 211 (449)
..++||++|.|+-|.+ ..+.+.+++. ++ ++.|.|. |||+.+|+|||||+| |||++.|++++
T Consensus 378 ~~IyV~g~~q~~~~~~---l~~~l~~lG~-~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~ 453 (629)
T 2zue_A 378 IVINVIGAEQKHPQLA---IKYALQLLGF-EDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIE 453 (629)
T ss_dssp EEEEEEEGGGHHHHHH---HHHHHHHTTC-HHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCcHhhHHHH---HHHHHHHcCC-CCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHH
Confidence 5677888776632222 2344444543 43 3334555 999999999999999 99999999999
Q ss_pred -----------------cChhHHHHHHhhcCcCCCcccCHHHHHHHHH----HHHHHHHHHHHHHHhc--CCc-------
Q 013130 212 -----------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD----AVFYIYQTLQDCEVAL--SPF------- 261 (449)
Q Consensus 212 -----------------yg~D~lR~~ll~~~~~~d~~fs~~~l~~~~~----~l~~l~~~~~~~~~~~--~~~------- 261 (449)
+|+|++|||+|+.++++|++|+++.+.+..+ -+++.+.|+..+.... ...
T Consensus 454 ~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~ 533 (629)
T 2zue_A 454 EKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETL 533 (629)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 9999999999999999999999999986532 3444555544432211 110
Q ss_pred -ccCC--CCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh-hhhhHHHHHHHH
Q 013130 262 -QEHG--KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIE 337 (449)
Q Consensus 262 -~~~~--~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~-~~~~~~~l~~~~ 337 (449)
.... ...+.+..|...+..+.+.+..++ ++++++.++.. +++++..+|+|++.+........ ..+++.++.++.
T Consensus 534 ~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~y-l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~ 611 (629)
T 2zue_A 534 FKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWF-ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVE 611 (629)
T ss_dssp HHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHH-HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHH
Confidence 0000 111223567888889999999999 89999999999 99999999999998854321111 124667778999
Q ss_pred HHHHHHHHHhcCCCC
Q 013130 338 NEVKEVLRILGLLPP 352 (449)
Q Consensus 338 ~~l~~~l~ilgi~~~ 352 (449)
.+|...|.+|||.+.
T Consensus 612 ~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 612 QVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCcc
Confidence 999999999999764
No 20
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=5.8e-36 Score=314.88 Aligned_cols=222 Identities=12% Similarity=0.125 Sum_probs=171.8
Q ss_pred HHHHHHc--CCCh----------HHHHHHHHHHHHHHHhhCCCCCCCccccccc-cHH-HHHHHHHHHHHcC--------
Q 013130 4 IRRANDL--GENP----------LSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HME-QIKDMITQIINND-------- 61 (449)
Q Consensus 4 ~~~A~~~--g~~~----------~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-h~~-~v~~~i~~L~~~G-------- 61 (449)
+.+|.++ |+++ +++|++|.+.|+++|+.|||.+ |.| |+|+ |++ .+++++++|+++|
T Consensus 78 ~~~a~~~~~G~~~~~~p~p~~~~~~~~~~~~~~~~~~l~~Lgi~~-D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~ 155 (523)
T 1irx_A 78 VPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV-DLL-YASELYKRGEYSEEIRLAFEKRDKIMEILN 155 (523)
T ss_dssp SCGGGGGGTTSBGGGSCCTTSSSSSHHHHHHHHHHHHHHTTTCCC-EEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCCcchhhHHHHHHHHHHHHHHHHHHcCCCc-eEE-echhhccchHHHHHHHHHHHchHHHHHHHH
Confidence 5566777 9998 9999999999999999999975 888 9999 999 8999999999999
Q ss_pred --------CeEeecCcEEEeCCCCCccccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCC-CCCCCC
Q 013130 62 --------CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPG 132 (449)
Q Consensus 62 --------~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~W-G~grPg 132 (449)
++|..+ ||+++.| +..+++.+++ ++.+. .++.+|.+ ++|+++|+++| |.|+||
T Consensus 156 ~~~g~~~~~~y~~~---~~~~~~~---~~~~~~~~~~------~~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~ 217 (523)
T 1irx_A 156 KYREIAKQPPLPEN---WWPAMVY---CPEHRREAEI------IEWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLR 217 (523)
T ss_dssp HHHHHTTCCCCCTT---CCSEEEE---CTTTCCEECE------EEECS--SSCEEECC----SSSCCCEECTTSSCEEEC
T ss_pred hhccccccccccCC---ceecccc---chhhCCcccc------cccCC--CCceeeee----cCCCccccCCcCCCCCCC
Confidence 555431 5554433 3333322211 11111 14568877 46889999999 999999
Q ss_pred chhhhHHHHHhhcCCCccEEeecccCcCch----hHHHHHHHhhccCCCCCcEEEeeeeeeeC--CccccccCCCccCHH
Q 013130 133 WHIECSAMSAHYLSSKFDIHGGGIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIR 206 (449)
Q Consensus 133 Wh~e~~~~~~~~~g~~~Dih~~GkDli~~H----~~~~~a~~~a~~~~~~~~~~~h~g~l~~~--G~KMSKSlGN~i~~~ 206 (449)
||++| +|...+||.. |+++|+|+++|| |.+++++ .|++.++| +|+|+|||+.+ |+|||||+||+|+|.
T Consensus 218 w~~d~-~~~~~~l~~~--vd~~G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~ 291 (523)
T 1irx_A 218 WRVDW-PMRWSHFGVD--FEPAGKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLS 291 (523)
T ss_dssp HHHHH-HHHHHHSCCC--BCCEEHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHH
T ss_pred CCcch-HhhHHHcCCC--CcCCCcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHH
Confidence 99999 8888889764 459999999999 8999997 56655455 67999999988 899999999999999
Q ss_pred HHHHhcChhHHHHHHhhcCcCCCcccCHH-HHHHHHHHHHHHHHHH
Q 013130 207 QITERYHPLALRHFLISAHYRSPLNYSVL-QLDSASDAVFYIYQTL 251 (449)
Q Consensus 207 dll~~yg~D~lR~~ll~~~~~~d~~fs~~-~l~~~~~~l~~l~~~~ 251 (449)
++++.|+||++||||++.+++++++||++ .+.++.+.+.++++.+
T Consensus 292 ~~~~~~~pdalR~~l~~~~~~~~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 292 DLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp HHHTTSCHHHHHHHHHSSCTTSCEEECCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHhcCCCCCceeCcchhHHHHHHHHHHHHHHH
Confidence 99999999999999999899999999999 8988887777776643
No 21
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.9e-32 Score=298.10 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=151.6
Q ss_pred CccEEeecccCcCchhHHHHHHHhh---c---c-CCCCCcEEEeeeeee--------eCCc-------------------
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCA---A---C-QDSNVSYWMHNGHVT--------NNNE------------------- 193 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a---~---~-~~~~~~~~~h~g~l~--------~~G~------------------- 193 (449)
|+|+++||+|+...|..|......+ + . ..||.++ ++||||+ .+|+
T Consensus 543 PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~ 621 (880)
T 4arc_A 543 PVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRI 621 (880)
T ss_dssp SEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCE
T ss_pred CceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceeccccCCcccccCHHHhcccccccccc
Confidence 8999999999998887765543322 2 2 2578887 6779995 3565
Q ss_pred -----------------cccccCCCccCHHHHHHhcChhHHHHHHhhc-CcCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Q 013130 194 -----------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCE 255 (449)
Q Consensus 194 -----------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~~~l~~~~~~l~~l~~~~~~~~ 255 (449)
|||||+||||+|.+++++||+|++|||+|+. ++++|++||++.+..+.+.+.++|+.+..+.
T Consensus 622 ~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~ 701 (880)
T 4arc_A 622 VKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHT 701 (880)
T ss_dssp EEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 9999999999999999999999999887654
Q ss_pred HhcCCcc-cCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHH
Q 013130 256 VALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLR 334 (449)
Q Consensus 256 ~~~~~~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~ 334 (449)
....... ........|++++..++.+.++|.++|+++|+|+.|++. |++|++.+|+|... . .....
T Consensus 702 ~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k~~~~---------~---~~~~~ 768 (880)
T 4arc_A 702 AKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAKAPTD---------G---EQDRA 768 (880)
T ss_dssp HTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTSCCS---------S---HHHHH
T ss_pred hcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhhhcc---------c---hHHHH
Confidence 3211100 001112346889999999999999999448999999999 99999988875311 0 11123
Q ss_pred HHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 335 KIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 335 ~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
.+...+..++.+|. |+|- .++++++.+
T Consensus 769 ~l~~~l~~ll~LLaPf~Ph-iaEElW~~L 796 (880)
T 4arc_A 769 LMQEALLAVVRMLNPFTPH-ICFTLWQEL 796 (880)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccHH-HHHHHHHHc
Confidence 44567777888887 5554 455555544
No 22
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.1e-31 Score=296.44 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=156.2
Q ss_pred CCccEEeecccCcCchhHH---HHHHHhhc---cC-CCCCcEEEeeeeeee-----------------------------
Q 013130 147 SKFDIHGGGIDLIFPHHEN---EIAQSCAA---CQ-DSNVSYWMHNGHVTN----------------------------- 190 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~---~~a~~~a~---~~-~~~~~~~~h~g~l~~----------------------------- 190 (449)
.|+|+++||+|+...|..| |...+..+ .+ .||.++ +.|||++.
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPES 608 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCS
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceeccccccccceeccccccccccccCc
Confidence 3899999999987777555 33333332 22 588998 56699974
Q ss_pred ------------------CC-------ccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHHH
Q 013130 191 ------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAV 244 (449)
Q Consensus 191 ------------------~G-------~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l 244 (449)
+| +|||||+||+|+|.+++++||+|++|||+++ +++++|++||++.+..+.+.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l 688 (878)
T 2v0c_A 609 ALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFL 688 (878)
T ss_dssp EEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHH
T ss_pred hhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHH
Confidence 89 8999999999999999999999999999998 799999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-C--cccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013130 245 FYIYQTLQDCEVALS-P--FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 321 (449)
Q Consensus 245 ~~l~~~~~~~~~~~~-~--~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~ 321 (449)
.++++.+......+. . ..........|++++..++.+.+++.++| ++|+++.|++. |++|+..+|+|.+...
T Consensus 689 ~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~-l~~f~~~l~k~~~~~~--- 763 (878)
T 2v0c_A 689 NRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLNALYEYRKDRP--- 763 (878)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHhhhcccch---
Confidence 999998765433221 0 00001113356899999999999999999 99999999999 9999999999965421
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHHHHHHH--------hhhcCHHHHHHHHHHHHHHhcCCC
Q 013130 322 PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKDKALK--------RAELTEEDVLQLIEERAAARKNKD 392 (449)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~li~~R~~aR~~Kd 392 (449)
. . ..+...|+.++.+|. |+|. .++++++.++..... ...+..+.+..+++.|...|..-+
T Consensus 764 -----~--~---~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~ 832 (878)
T 2v0c_A 764 -----V--T---PVYRTAIRYYLQMLFPFAPH-LAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIH 832 (878)
T ss_dssp -----S--C---HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHCSSCGGGSCCCCCCGGGGC-------------------
T ss_pred -----h--H---HHHHHHHHHHHHHHcccchH-HHHHHHHHcCCCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHcc
Confidence 0 1 234567777778887 6666 677777776410000 001123456666777766665443
Q ss_pred h
Q 013130 393 F 393 (449)
Q Consensus 393 f 393 (449)
.
T Consensus 833 v 833 (878)
T 2v0c_A 833 I 833 (878)
T ss_dssp -
T ss_pred c
Confidence 3
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.95 E-value=7.9e-28 Score=255.30 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=221.8
Q ss_pred hhHHHHHH------cCCC-----hHHHHHHHHHHHHHHHhhCCCCCCCccccccccH-HHHHHHHHHHHHcCCeEeecCc
Q 013130 2 QIIRRAND------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM-EQIKDMITQIINNDCAYVVEGD 69 (449)
Q Consensus 2 KI~~~A~~------~g~~-----~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~-~~v~~~i~~L~~~G~aY~~~g~ 69 (449)
+|+.+|++ .|.+ ++++++.+.+.|++++++|||.+ |.|++.|+|+ +.|+++++.|.++|++|+.+|.
T Consensus 243 ~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa 321 (607)
T 1f7u_A 243 STNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGA 321 (607)
T ss_dssp HSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTE
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhhhHHHHHHHHHHhCCCEEEECCc
Confidence 46667776 5877 78999999999999999999998 9999999988 8899999999999999999999
Q ss_pred EEEeCCCCCccccccCcccccccCCCCCcccccccC------ccch--hccccccCCCCcccCCCCCCCCCchhhhHHHH
Q 013130 70 VFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRN------PADF--ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMS 141 (449)
Q Consensus 70 ~yf~~~~~~~yg~ls~~~l~~~~~g~~~~~~~~k~~------~~Df--~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~ 141 (449)
+||++++| |+ +++. ++. .|.+ +.|+ ++||..
T Consensus 322 ~~~~~~~~---g~----~~d~-----~v~---~KsDG~~~Y~t~Dia~~~~k~~-------------------------- 360 (607)
T 1f7u_A 322 VLIDLTKF---NK----KLGK-----AIV---QKSDGTTLYLTRDVGAAMDRYE-------------------------- 360 (607)
T ss_dssp EEEEGGGT---CT----TTCE-----EEE---ECTTSCCCHHHHHHHHHHHHHH--------------------------
T ss_pred EEEEeccc---CC----CCCc-----eeE---eccCCCcCCCCCcHHHHHHHHh--------------------------
Confidence 99999886 32 1110 000 1111 2233 333321
Q ss_pred HhhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcCh-------
Q 013130 142 AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP------- 214 (449)
Q Consensus 142 ~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~------- 214 (449)
...++..++||++|.|+.|+++. +.+.+++. +++++|.|.+|.+++ |||||+||+|+++|+++.++.
T Consensus 361 ~~~~d~~IyV~g~~q~~~f~q~~---~~~~~lG~-~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~ 434 (607)
T 1f7u_A 361 KYHFDKMIYVIASQQDLHAAQFF---EILKQMGF-EWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMK 434 (607)
T ss_dssp HHCCSEEEEECCGGGHHHHHHHH---HHHHHTTC-GGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEcChHhhHHHHHH---HHHHHcCC-CcCcEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 11345678999999998887653 34445543 567779999997776 699999999999999998833
Q ss_pred ---------------------hHHHHHHhhcCcCCCcccCHHHHHHHHH----HHHHHHHHHHHHHHhcCCccc-----C
Q 013130 215 ---------------------LALRHFLISAHYRSPLNYSVLQLDSASD----AVFYIYQTLQDCEVALSPFQE-----H 264 (449)
Q Consensus 215 ---------------------D~lR~~ll~~~~~~d~~fs~~~l~~~~~----~l~~l~~~~~~~~~~~~~~~~-----~ 264 (449)
.++|||+|+.+++++++|+++.+....+ -+..-+.|+..+.....+... .
T Consensus 435 ~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~ 514 (607)
T 1f7u_A 435 KNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINA 514 (607)
T ss_dssp TCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTS
T ss_pred hCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 4799999999999999999999987653 223333343333222211110 0
Q ss_pred C---CCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh-hhhhHHHHHHHHHHH
Q 013130 265 G---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIENEV 340 (449)
Q Consensus 265 ~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~-~~~~~~~l~~~~~~l 340 (449)
. ...+.+..|...+..+.+.+..++ ++++++.++.. +++++..+|+|++.++....... ..++..++.++..+|
T Consensus 515 ~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Y-l~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL 592 (607)
T 1f7u_A 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTVVTY-LFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVL 592 (607)
T ss_dssp CGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHHHHH-HHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 011223457778888999999999 89999999999 99999999999998865321111 135778889999999
Q ss_pred HHHHHHhcCCCC
Q 013130 341 KEVLRILGLLPP 352 (449)
Q Consensus 341 ~~~l~ilgi~~~ 352 (449)
+..|.+|||.+.
T Consensus 593 ~~gL~LLGI~~p 604 (607)
T 1f7u_A 593 YNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHhcCCCcc
Confidence 999999999764
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.95 E-value=1.7e-26 Score=237.68 Aligned_cols=292 Identities=14% Similarity=0.100 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCcccccccCCC
Q 013130 16 SLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGE 95 (449)
Q Consensus 16 e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~~g~ 95 (449)
.+++...+.|++++++|||.++.++...+-|- .|.+.++.|.++|++|+.+|.+|++.++| |.
T Consensus 142 ~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~---g~------------- 204 (464)
T 3fnr_A 142 WAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQK---GD------------- 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGG---TC-------------
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEeccc---CC-------------
Confidence 34455677899999999999944445545555 88999999999999999999999977653 21
Q ss_pred CCcccccccCccchhccccccCCCCcccCCCCCCCCCchhh-hHHHHHhhc-CCCccEEeecccCcCchhHHHHHHHhhc
Q 013130 96 RVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE-CSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIAQSCAA 173 (449)
Q Consensus 96 ~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e-~~~~~~~~~-g~~~Dih~~GkDli~~H~~~~~a~~~a~ 173 (449)
..|+++-|+ +|.+++ ..- .++...++- |..--|++.|.|+.- |..-..+.+.++
T Consensus 205 ----------~~~~vl~ks--DG~~~Y-----------~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~-~f~~l~~~l~~l 260 (464)
T 3fnr_A 205 ----------EKDRVIIRE--DGRGTY-----------LAADIVYHKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFL 260 (464)
T ss_dssp ----------SSCEEEECT--TSCBCH-----------HHHHHHHHHHHHTSSCSEEEEEEEGGGGG-GHHHHHHHHHTT
T ss_pred ----------CCceEEEeC--CCceeh-----------hhHHHHHHHHHHHcCCCeEEEEecCcHHH-HHHHHHHHHHHc
Confidence 024555443 454443 211 112222321 323448899999442 333333444445
Q ss_pred cCCCCCcEEEeeeeeee--CCc--cccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHHHHH--H---H
Q 013130 174 CQDSNVSYWMHNGHVTN--NNE--KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD--A---V 244 (449)
Q Consensus 174 ~~~~~~~~~~h~g~l~~--~G~--KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~~~~--~---l 244 (449)
+..|+.-.++++|++++ +|+ |||||+||+|+|.|+++.||+|++|||+++.++++|++|+++.+.+..+ . +
T Consensus 261 G~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~Yl 340 (464)
T 3fnr_A 261 GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYI 340 (464)
T ss_dssp TCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHH
T ss_pred CCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHH
Confidence 44443214467899965 885 9999999999999999999999999999999999999999999976543 2 2
Q ss_pred HHHHHHHHHHHHhcC--CcccC----CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 013130 245 FYIYQTLQDCEVALS--PFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 318 (449)
Q Consensus 245 ~~l~~~~~~~~~~~~--~~~~~----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~ 318 (449)
+..+.|+..+..... ..... ......+.+++..+.++.+.+.+++ ++++++.++.. |++|+..+|+|++.++
T Consensus 341 qYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~ 418 (464)
T 3fnr_A 341 NYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAF-EARALQKIPDY-LKNLAANFHKFYNENK 418 (464)
T ss_dssp HHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCc
Confidence 333445544433221 11100 0111126778888999999999999 99999999999 9999999999999886
Q ss_pred ccCchhh-hhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 319 KKQPKQQ-QLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 319 pw~~~~~-~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
....... ..++..++.++ +|+..|.+|||.++
T Consensus 419 vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 419 VVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp CTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 5421111 22455566555 99999999999775
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.93 E-value=2.9e-27 Score=244.66 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=158.6
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----CCcccccc---C
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRLS---G 85 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~~~yg~ls---~ 85 (449)
+|.--...|.+.|.++|+.||+.+ |..+++|+|++.+++++++|+++|+||. |||+.+ +..+|..+ +
T Consensus 139 D~~R~~~e~~~~I~edL~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~ 212 (553)
T 3aii_A 139 DPRRVDPEAYDMIPADLEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRS 212 (553)
T ss_dssp CGGGCCTTHHHHHHHHHHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGG
T ss_pred CcccccHHHHHHHHHHHHHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCcccc
Confidence 444446689999999999999998 8899999999999999999999999995 676544 23334433 2
Q ss_pred cccc-------cccCCC------CCc--ccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCcc
Q 013130 86 QRLE-------NNRAGE------RVA--VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 150 (449)
Q Consensus 86 ~~l~-------~~~~g~------~~~--~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~D 150 (449)
++.+ ++..|. |+. ....+.++.||++|+...+++|.|...|. |+|+||++| ++|
T Consensus 213 ~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~----------~vD 281 (553)
T 3aii_A 213 LGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSV----------AVD 281 (553)
T ss_dssp CCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHH----------HHH
T ss_pred CCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeee----------eee
Confidence 2222 355564 222 22234577899999976666776544443 699999999 467
Q ss_pred EEeecccCcCc---hhHHHHHHH--hhccCCCCCcEEEeeeeeeeCCccccccCCC---------------ccCHHHHHH
Q 013130 151 IHGGGIDLIFP---HHENEIAQS--CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITE 210 (449)
Q Consensus 151 ih~~GkDli~~---H~~~~~a~~--~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~ 210 (449)
.|.+|+++++. |+.+.++|. .++.+.+++++| |+++|+++|+|||||+|| +.|+.++..
T Consensus 282 D~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~ 360 (553)
T 3aii_A 282 DHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIAR 360 (553)
T ss_dssp HHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHH
T ss_pred eccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHH
Confidence 88888888888 999999998 344455677885 999999999999999998 788999997
Q ss_pred h-cChhHHHHHHhhcCc-CCCcccCHHHHHHHHHH
Q 013130 211 R-YHPLALRHFLISAHY-RSPLNYSVLQLDSASDA 243 (449)
Q Consensus 211 ~-yg~D~lR~~ll~~~~-~~d~~fs~~~l~~~~~~ 243 (449)
. |.|+++|.||++.+| +++.+|+++.|..+.+.
T Consensus 361 rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 361 RGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp TTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHH
Confidence 6 999999999999877 79999999999987543
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.93 E-value=3.3e-26 Score=236.80 Aligned_cols=214 Identities=20% Similarity=0.159 Sum_probs=171.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----C----Cccccc
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S----PNYGRL 83 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~----~~yg~l 83 (449)
+++.-.+..|.+.|.++|+.|||.+++..+++|+|++.+.+++.+|+++|+||. |||+.. + ..+|..
T Consensus 68 TD~~R~~~e~~~~I~edL~wLGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~ 142 (553)
T 1qtq_A 68 TNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKN 142 (553)
T ss_dssp CCGGGCCHHHHHHHHHHHHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCC
T ss_pred CCchhcCHHHHHHHHHHHHHcCCCCCCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCC
Confidence 455666789999999999999999988999999999999999999999999995 666542 1 123443
Q ss_pred c---Cccc-------ccccCCC--------C--CcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHh
Q 013130 84 S---GQRL-------ENNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAH 143 (449)
Q Consensus 84 s---~~~l-------~~~~~g~--------~--~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~ 143 (449)
+ .+.. +++..|. | +++...+.++.||++||...++++.|.++| .|+|+||+.|
T Consensus 143 ~~~R~~s~ee~~~~fe~m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~------ 215 (553)
T 1qtq_A 143 SPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTH------ 215 (553)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHH------
T ss_pred CccccCchhhhHhHHHHHhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-cccccccccc------
Confidence 3 2222 2345554 2 334445678899999998888889999999 7899999988
Q ss_pred hcCCCccEEeecccCcC---chhHHHHHHH---hhccCCCCCcEEEeeeeeeeCCccccccCCC---------------c
Q 013130 144 YLSSKFDIHGGGIDLIF---PHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------F 202 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~---~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~ 202 (449)
++|.|.+|+++++ +||.+.|+|. .|++...++++| |+|||+++|.|||||+|| +
T Consensus 216 ----vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~ 290 (553)
T 1qtq_A 216 ----CISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRM 290 (553)
T ss_dssp ----HHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTS
T ss_pred ----EEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcch
Confidence 5799999999999 9999999998 566433367887 889999999999999997 7
Q ss_pred cCHHHHHHh-cChhHHHHHHhhcCcCCCcc-cCHHHHHHHHH
Q 013130 203 FTIRQITER-YHPLALRHFLISAHYRSPLN-YSVLQLDSASD 242 (449)
Q Consensus 203 i~~~dll~~-yg~D~lR~~ll~~~~~~d~~-fs~~~l~~~~~ 242 (449)
+++.++.+. |.|+++|.||++.+++...+ +++..|.+...
T Consensus 291 ~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 291 PTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIR 332 (553)
T ss_dssp CBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHH
T ss_pred hhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHH
Confidence 899999976 99999999999977765444 78888877443
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.90 E-value=2.3e-24 Score=231.97 Aligned_cols=212 Identities=17% Similarity=0.117 Sum_probs=165.6
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----C----Ccccccc
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S----PNYGRLS 84 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~----~~yg~ls 84 (449)
++.--+..|.+.|.++|+.|||.+++..+++|+|++.+++++++|+++|+||. |||+.. + ..+|..+
T Consensus 109 D~~R~~~e~~~~IledL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s 183 (851)
T 2hz7_A 109 NPELARQEYVDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPS 183 (851)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCC
T ss_pred CcccccHHHHHHHHHHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCc
Confidence 34444678999999999999999988999999999999999999999999995 666542 1 1234443
Q ss_pred C-c--cc-------ccccCCC--------C--CcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhh
Q 013130 85 G-Q--RL-------ENNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY 144 (449)
Q Consensus 85 ~-~--~l-------~~~~~g~--------~--~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~ 144 (449)
. + .. +++..|. | +++...+.++.||++|+...++++.|.+|| .|+|+||++|+
T Consensus 184 ~~R~ls~ee~l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v------ 256 (851)
T 2hz7_A 184 PYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP------ 256 (851)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH------
T ss_pred ccccCCHHHHhhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE------
Confidence 1 1 11 2345554 3 334455678889999998878889999999 78999999995
Q ss_pred cCCCccEEeecccCcCc---hhHHHHHHH---hhccCCCCCcEEEeeeeeeeCCccccccCCC---------------cc
Q 013130 145 LSSKFDIHGGGIDLIFP---HHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FF 203 (449)
Q Consensus 145 ~g~~~Dih~~GkDli~~---H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i 203 (449)
+|.|.+|+++++. |+.+.++|. .|++....+++| |+|||+++|.|||||+|| ++
T Consensus 257 ----VDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~ 331 (851)
T 2hz7_A 257 ----LQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMP 331 (851)
T ss_dssp ----HHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSS
T ss_pred ----eeeccCCcceeecchhhhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchh
Confidence 5777777777777 999999987 666433226776 889999999999999987 67
Q ss_pred CHHHHHHh-cChhHHHHHHhhcCcCC-CcccCHHHHHHHH
Q 013130 204 TIRQITER-YHPLALRHFLISAHYRS-PLNYSVLQLDSAS 241 (449)
Q Consensus 204 ~~~dll~~-yg~D~lR~~ll~~~~~~-d~~fs~~~l~~~~ 241 (449)
++.++.+. |.|+++|.||++.+|.. +..+++..+....
T Consensus 332 TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 332 TLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp BHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 89999966 99999999999977754 4447777777443
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.85 E-value=2.9e-21 Score=199.69 Aligned_cols=199 Identities=17% Similarity=0.183 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCC-----------------CCCc
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSPN 79 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~-----------------~~~~ 79 (449)
-...|.+.+.++|+.|||.++.-.++.|+|++..++++++|+++|+||. |||+. .|+.
T Consensus 48 ~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~ 122 (492)
T 2cfo_A 48 SRPEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDN 122 (492)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCC
T ss_pred cchHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCc
Confidence 3467899999999999999855689999999999999999999999995 67764 2433
Q ss_pred -cccccCcc-cccccCCC----CCcc----------------cccccCc-cchhccccccCCCCcccCCCCCCCCCchhh
Q 013130 80 -YGRLSGQR-LENNRAGE----RVAV----------------DSRKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIE 136 (449)
Q Consensus 80 -yg~ls~~~-l~~~~~g~----~~~~----------------~~~k~~~-~Df~lwk~~~~~~~~w~s~WG~grPgWh~e 136 (449)
|+.++... .+.+..|. |+.+ ...+.++ .||+|||... +| |.|+|+||++
T Consensus 123 ~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la 194 (492)
T 2cfo_A 123 RHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLV 194 (492)
T ss_dssp TTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHH
T ss_pred ccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhh
Confidence 45555421 11223343 2111 1134567 8999998632 56 7899999999
Q ss_pred hHHHHHhhcCCCccEEeecccCcCc---hhHHHHHHHh--hccCCCCCcEEEeeeee-eeCCccccccCCCccCHHHHHH
Q 013130 137 CSAMSAHYLSSKFDIHGGGIDLIFP---HHENEIAQSC--AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITE 210 (449)
Q Consensus 137 ~~~~~~~~~g~~~Dih~~GkDli~~---H~~~~~a~~~--a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~ 210 (449)
|+ +|.|.+|+++++. |+.|.|.|.. .+.+.+++ .|+|.+++ +.+|+|||||.||+ ++.++.+
T Consensus 195 ~v----------vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~ 262 (492)
T 2cfo_A 195 VV----------VDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRA 262 (492)
T ss_dssp HH----------HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHH
T ss_pred hh----------hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHH
Confidence 95 6888888888888 9999999884 23344444 56999995 57999999999997 7899987
Q ss_pred -hcChhHHHHHHhhcCcC----CCcccCHHHHHHH
Q 013130 211 -RYHPLALRHFLISAHYR----SPLNYSVLQLDSA 240 (449)
Q Consensus 211 -~yg~D~lR~~ll~~~~~----~d~~fs~~~l~~~ 240 (449)
.|.|+++|.||+...+. ..--||.+.+.+.
T Consensus 263 ~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~ 297 (492)
T 2cfo_A 263 MGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKH 297 (492)
T ss_dssp TTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhh
Confidence 49999999999884332 2344777766543
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.77 E-value=3.7e-19 Score=172.98 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=115.7
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee---------cCcEEEeCCCC-Ccccc
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGR 82 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~---------~g~~yf~~~~~-~~yg~ 82 (449)
++..-...|.+.+.++|+.|||.++...++.|+|++.+++++++|+++|+||.. .|.+|+++-++ +.||+
T Consensus 48 D~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~ 127 (298)
T 1nzj_A 48 DPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPD 127 (298)
T ss_dssp CGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCST
T ss_pred CchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCC
Confidence 344444679999999999999998666899999999999999999999999974 35577776554 55665
Q ss_pred ccC---------cccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEe
Q 013130 83 LSG---------QRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 153 (449)
Q Consensus 83 ls~---------~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~ 153 (449)
.+. ...+++..|. +..+ .+.++.||+|||. .|+|+||++|+. ...+.|.+.+||
T Consensus 128 ~~~~R~r~~~~~~~f~D~~~G~-~~~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr- 190 (298)
T 1nzj_A 128 NAAVRIRQQHPVTQFTDQLRGI-IHAD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR- 190 (298)
T ss_dssp TCEEEECCSSCCCEEEETTTEE-EECC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE-
T ss_pred CCcEEEecCCcccceehhhCcc-cccC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe-
Confidence 441 2233444443 2222 2345679999985 378999999987 566778889999
Q ss_pred ecccCcCchhHHHHHHHh--hccCCCCCcEEEeeeee-eeCCccccccCCCc
Q 013130 154 GGIDLIFPHHENEIAQSC--AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNF 202 (449)
Q Consensus 154 ~GkDli~~H~~~~~a~~~--a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~ 202 (449)
|.| |+.|.++|.. .+.+.+++++ +|.+++ +.+|+|||||.||+
T Consensus 191 -G~D----~l~~t~~q~~l~~alG~~~p~~-~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 191 -GAD----LIEPTVRQISLYQLFGWKVPDY-IHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp -EGG----GHHHHHHHHHHHHHHTCCCCEE-EEECBCCC-------------
T ss_pred -Ccc----ccccHHHHHHHHHHcCCCCCeE-EEeeeeECCCCCcccccCCcc
Confidence 899 8899999986 4445566777 799998 67999999999997
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.30 E-value=4.1e-11 Score=123.77 Aligned_cols=184 Identities=18% Similarity=0.282 Sum_probs=120.0
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCcc---------ccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-----
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~---------~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~----- 77 (449)
+++.-....+.+.+.++|+.||+.+ |-. .+.|+|.+..++++++|+++|+||. +||+.+.
T Consensus 55 tD~~r~~~~~~~~I~~~l~wlGl~~-de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~-----c~ct~eel~~~r 128 (481)
T 2o5r_A 55 TDLERSEREYEEKLMESLRWLGLLW-DEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY-----VYAYPEEIEEMR 128 (481)
T ss_dssp SSCCSGGGHHHHHHHHHHHHHTCCC-SBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE-----ECCCSTTTHHHH
T ss_pred CCccccHHHHHHHHHHHHHHcCCCC-CCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE-----ecCCHHHHHHHH
Confidence 3344445677888999999999997 643 3788999999999999999999994 4554421
Q ss_pred ---------Cccc-cccCccccc------ccCCCC----Cc-------cc--------ccccCccchhccccccCCCCcc
Q 013130 78 ---------PNYG-RLSGQRLEN------NRAGER----VA-------VD--------SRKRNPADFALWKAAKAGEPSW 122 (449)
Q Consensus 78 ---------~~yg-~ls~~~l~~------~~~g~~----~~-------~~--------~~k~~~~Df~lwk~~~~~~~~w 122 (449)
|.|. ..|.+++.. +..|.. .. ++ ....+..||+|||.
T Consensus 129 ~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------- 200 (481)
T 2o5r_A 129 EKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------- 200 (481)
T ss_dssp HHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT--------
T ss_pred HHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc--------
Confidence 1121 122222210 112210 00 00 01123357777764
Q ss_pred cCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeee-eeCCcccccc
Q 013130 123 DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKS 198 (449)
Q Consensus 123 ~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l-~~~G~KMSKS 198 (449)
.|.|.||..|.. -....| ++.-+-|.| |+.+.+.|. .+++.++ +. |.|.+++ ..+|+||||+
T Consensus 201 -----DG~ptY~~a~vv-DD~~~g--ithvirG~D----~~~~t~~q~~l~~aLG~~~-p~-~~H~plil~~~G~KLSKR 266 (481)
T 2o5r_A 201 -----NGLPTYNFACVV-DDMLME--ITHVIRGDD----HLSNTLRQLALYEAFEKAP-PV-FAHVSTILGPDGKKLSKR 266 (481)
T ss_dssp -----TSCBCHHHHHHH-HHHHTT--CSEEEEEGG----GHHHHHHHHHHHHHTTCCC-CE-EEEECCEECTTSSBCCGG
T ss_pred -----CCCcchhhHHHH-HHHhCC--CCeEEEChh----HHHhHHHHHHHHHHcCCCC-Ce-EEEEeeEECCCCCcccCc
Confidence 278888988752 233344 454568899 666666554 6665444 44 5898885 4699999999
Q ss_pred CCCccCHHHHHH-hcChhHHHHHHhhc
Q 013130 199 LGNFFTIRQITE-RYHPLALRHFLISA 224 (449)
Q Consensus 199 lGN~i~~~dll~-~yg~D~lR~~ll~~ 224 (449)
.|++ ++.++.+ .|.|+++|.|+...
T Consensus 267 ~g~~-~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 267 HGAT-SVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp GSCC-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred CCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 9998 8999987 58999999888763
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.29 E-value=2.1e-11 Score=125.23 Aligned_cols=197 Identities=16% Similarity=0.172 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCcc---------ccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC--------
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------- 76 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~---------~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-------- 76 (449)
+.--...|.+.+.++|+.|||.+ |-- .+.|++.+...+++++|+++|+||. +||+.+
T Consensus 45 ~~R~~~~~~~~I~~dl~wlGl~w-d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~-----c~ct~~el~~~r~~ 118 (468)
T 1j09_A 45 RARYVPGAEERILAALKWLGLSY-DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR-----AFETPEELEQIRKE 118 (468)
T ss_dssp TTSCCTTHHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE-----ECCCHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE-----cCCCHHHHHHHHHH
Confidence 33345578899999999999997 655 5899999999999999999999994 444321
Q ss_pred ---CCc-cccccCccc-ccccCCCC------C------c--------ccccccCccchhccccccCCCCcccCCCCCCCC
Q 013130 77 ---SPN-YGRLSGQRL-ENNRAGER------V------A--------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRP 131 (449)
Q Consensus 77 ---~~~-yg~ls~~~l-~~~~~g~~------~------~--------~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grP 131 (449)
|+. |..++.... ..+..|.+ + . +.....+..||++||. .|.|
T Consensus 119 ~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~P 185 (468)
T 1j09_A 119 KGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYP 185 (468)
T ss_dssp HSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCB
T ss_pred cCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCe
Confidence 221 222321100 01111210 0 0 1111223468888865 2788
Q ss_pred CchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeee-eeCCccccccCCCccCHHH
Q 013130 132 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQ 207 (449)
Q Consensus 132 gWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~d 207 (449)
.||..|+. -....|-+-.|+ |.| |+.+.+.|. .+++.++ +. |.|.+++ ..+|+|||||.||+ ++.+
T Consensus 186 tY~~a~vv-DD~~~githvir--G~D----~~~~t~~q~~l~~alg~~~-p~-~~h~~li~~~~g~klSKR~g~~-~l~~ 255 (468)
T 1j09_A 186 TYHLANVV-DDHLMGVTDVIR--AEE----WLVSTPIHVLLYRAFGWEA-PR-FYHMPLLRNPDKTKISKRKSHT-SLDW 255 (468)
T ss_dssp CHHHHHHH-HHHHTTCCEEEE--EGG----GGGGHHHHHHHHHHHTCCC-CE-EEEECCCBCTTSCBCCTTTSCC-BHHH
T ss_pred eehhHHHH-HHHHCCCCeEEE--Chh----hhhhHHHHHHHHHHcCCCC-Ce-EEEeeeeeCCCCCccccccchh-hHHH
Confidence 89988753 223345444444 799 677776665 5554443 44 4788886 46999999999998 8888
Q ss_pred HHH-hcChhHHHHHHhhcCcC--CC-cccCHHHHHH
Q 013130 208 ITE-RYHPLALRHFLISAHYR--SP-LNYSVLQLDS 239 (449)
Q Consensus 208 ll~-~yg~D~lR~~ll~~~~~--~d-~~fs~~~l~~ 239 (449)
+.+ .|.|+++|-|+..-.+. .+ -.|+.+.+.+
T Consensus 256 ~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~ 291 (468)
T 1j09_A 256 YKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQ 291 (468)
T ss_dssp HHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHh
Confidence 887 49999999999874332 22 4578766654
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.25 E-value=8e-11 Score=121.50 Aligned_cols=195 Identities=17% Similarity=0.202 Sum_probs=127.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCcc---------ccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC------
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------ 77 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~---------~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~------ 77 (449)
++.--...+.+.+.++|+.|||.+ |-- .+.|++.+...+++++|+++|+||. +||+.+.
T Consensus 68 D~~R~~~~~~~~I~~dL~wlGl~w-De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~-----c~ct~eel~~~~~ 141 (488)
T 3afh_A 68 DTERSSREYEQQILESLRWCGLDW-DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY-----VVYDKEDPSKELF 141 (488)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE-----EEECSSSTTSEEE
T ss_pred CcccccHHHHHHHHHHHHHcCCCC-CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe-----cCCCHHHHHhhcC
Confidence 444456688899999999999997 664 4899999999999999999999995 4544321
Q ss_pred Cccccc-----cC-------------cccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHH
Q 013130 78 PNYGRL-----SG-------------QRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSA 139 (449)
Q Consensus 78 ~~yg~l-----s~-------------~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~ 139 (449)
|.|..- .| ....|++.|. + .....+..||+|+|. .|.|.||..|..
T Consensus 142 ~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~-~--~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV 205 (488)
T 3afh_A 142 TTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGY-M--EFDNSTLEDFIIMKS-------------NGFPTYNFAVVV 205 (488)
T ss_dssp EESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEE-E--EEEGGGSCCEEEECT-------------TSCBCHHHHHHH
T ss_pred CCCCchhhHHhcCCCceEEEECCCCceeEEecccee-E--eecCCCCCCeEEEec-------------CCCeehhhHHHH
Confidence 112110 00 0011111111 0 111123458888875 267788887753
Q ss_pred HHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHH-hcCh
Q 013130 140 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHP 214 (449)
Q Consensus 140 ~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~ 214 (449)
-....|-+-.|+ |.| |+.|.|.|. .|++.++ +. |.|..+++ .+|+||||+.|+ +++.++.+ .|.|
T Consensus 206 -DD~~mgIThViR--G~D----~l~~tp~q~~l~~aLG~~~-P~-f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~p 275 (488)
T 3afh_A 206 -DDHLMRISHVFR--GED----HLSNTPKQLMIYEAFGWEA-PV-FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILS 275 (488)
T ss_dssp -HHHHTTCSEEEE--EGG----GGGGHHHHHHHHHHHTCCC-CE-EEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCH
T ss_pred -HHHhcCCCEEEE--chh----hhhCHHHHHHHHHHcCCCC-Ce-EEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCH
Confidence 223345444444 799 788887776 4554444 44 47888875 699999999999 58999887 5999
Q ss_pred hHHHHHHhhcCc--CCCcccCHHHHHH
Q 013130 215 LALRHFLISAHY--RSPLNYSVLQLDS 239 (449)
Q Consensus 215 D~lR~~ll~~~~--~~d~~fs~~~l~~ 239 (449)
+++|.|++.-.+ ..+--||.+.+.+
T Consensus 276 eal~n~l~~lG~s~~~~e~~s~~e~i~ 302 (488)
T 3afh_A 276 RALMNYLALLGWRVEGDEIFTIEEKLQ 302 (488)
T ss_dssp HHHHHHHHHTTCCCSSCSCCCHHHHGG
T ss_pred HHHHHHHHHhCCCCcccccCCHHHHHh
Confidence 999999987332 2224466555433
No 33
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.23 E-value=1.1e-10 Score=123.06 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=120.2
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccc---------cccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC------C
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------S 77 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~---------rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~------~ 77 (449)
++.--...+.+.+.++|+.|||.+ |--| +.|++.+...+++++|+++|+||. +||+.. -
T Consensus 172 D~~r~~~~~~~~I~~dL~wlGl~~-D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~-----c~ct~~el~~~~~ 245 (592)
T 3al0_C 172 DTERSSREYEQQILESLRWCGLDW-DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY-----VVYDKEDPSKELF 245 (592)
T ss_dssp CSSSCCHHHHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEE-----EEEETTEEEEECC
T ss_pred ChhhccHHHHHHHHHHHHHcCCCC-CCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceE-----ecCCHHHHHhhcC
Confidence 334445678899999999999997 6643 899999999999999999999995 344321 0
Q ss_pred Cccccc-----cC-------------cccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHH
Q 013130 78 PNYGRL-----SG-------------QRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSA 139 (449)
Q Consensus 78 ~~yg~l-----s~-------------~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~ 139 (449)
|.|..- .| ....|++.|. + .....+..||+|||. .|.|.||..|..
T Consensus 246 ~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~-~--~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv 309 (592)
T 3al0_C 246 TTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGY-M--EFDNSTLEDFIIMKS-------------NGFPTYNFAVVV 309 (592)
T ss_dssp CCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCS-E--ECCSSSSCCEEEECT-------------TSCCCHHHHHHH
T ss_pred CCCCcHHHHhhcCCCceEEEECCCCCceeeecccce-e--eeccccCCCeEEEcC-------------CCCeehhhHHHH
Confidence 111110 00 0112222222 1 111233468888875 278888988753
Q ss_pred HHHhhcCCCccEEeecccCcCchhHHHHHHHh---hccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHH-hcCh
Q 013130 140 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC---AACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHP 214 (449)
Q Consensus 140 ~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~---a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~ 214 (449)
-....|-+-.|+ |.| |+.+.+.|.. |++. +++.+ .|..+++ .+|.||||+.|+ +++.++.+ .|.|
T Consensus 310 -DD~~~githvir--G~D----~~~~t~~q~~l~~alg~-~~P~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~p 379 (592)
T 3al0_C 310 -DDHLMRISHVFR--GED----HLSNTPKQLMIYEAFGW-EAPVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILS 379 (592)
T ss_dssp -HHHHTTCSBCCE--EGG----GGGGHHHHHHHHTTTTC-CCCBC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCH
T ss_pred -HHHhcCCCeEEE--chh----hHhCHHHHHHHHHHhCC-CCCeE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCH
Confidence 223345444444 799 7777777763 4433 33444 7877774 699999999999 68999987 5999
Q ss_pred hHHHHHHhhc
Q 013130 215 LALRHFLISA 224 (449)
Q Consensus 215 D~lR~~ll~~ 224 (449)
+++|.|++.-
T Consensus 380 eal~~~l~~l 389 (592)
T 3al0_C 380 RALMNYLALL 389 (592)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.05 E-value=4e-09 Score=108.37 Aligned_cols=201 Identities=20% Similarity=0.199 Sum_probs=124.1
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--------------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-------------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~-------------- 77 (449)
+++.-....|.+.+.++|+.|||.++....+.|+|++..++++++|+++|+||. +||+.+.
T Consensus 67 tD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~-----C~ct~eel~~~r~~~~~~~~~ 141 (490)
T 4g6z_A 67 TDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYP-----CYMSTEELDALRERQRAAGEK 141 (490)
T ss_dssp CCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECC------------------
T ss_pred CCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEe-----CCCCHHHHHHHHHHHHhcCCC
Confidence 455556678999999999999999844457999999999999999999999994 4554321
Q ss_pred Cccc----cccCcccccccCCCCC------------ccc--------ccccCccchhccccccCCCCcccCCCCCCCCCc
Q 013130 78 PNYG----RLSGQRLENNRAGERV------------AVD--------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGW 133 (449)
Q Consensus 78 ~~yg----~ls~~~l~~~~~g~~~------------~~~--------~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgW 133 (449)
+.|. .++.........|.+. .++ ..-....||+|.|. .|.|.+
T Consensus 142 ~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------------DG~ptY 208 (490)
T 4g6z_A 142 PRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARP-------------DGTPMY 208 (490)
T ss_dssp -CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECT-------------TSCBCH
T ss_pred CCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEee-------------CCCccc
Confidence 0111 1110000000011100 000 00011235555442 256777
Q ss_pred hhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHH
Q 013130 134 HIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQIT 209 (449)
Q Consensus 134 h~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll 209 (449)
|..|.. -....|-+-.| =|.| |..+.|.|. .|++.++ +.+ .|...++ .+|+||||+.|. +++.++.
T Consensus 209 ~lA~vV-DD~~mgIThVi--RG~D----~l~~tprq~~l~~aLG~~~-P~f-~HlpLi~~~~g~KLSKR~g~-~sl~~~r 278 (490)
T 4g6z_A 209 NFCVVV-DDLDMGITHVI--RGDD----HVNNTPRQINILRALGGEV-PVY-AHLPTVLNEQGEKMSKRHGA-MSVMGYR 278 (490)
T ss_dssp HHHHHH-HHHHTTCCEEE--EEGG----GGGGHHHHHHHHHHTTCCC-CEE-EEECCEECTTSSBCCTTTTC-CBHHHHH
T ss_pred hhHHHH-HHHhcCCCEEE--eccc----cccChHHHHHHHHHcCCCC-CeE-EEecceeCCCCCcccCCCCC-cCHHHHH
Confidence 776532 12223433334 4799 777777665 4554444 444 7888776 489999999986 6888887
Q ss_pred H-hcChhHHHHHHhhc--CcCCCcccCHHHHHHH
Q 013130 210 E-RYHPLALRHFLISA--HYRSPLNYSVLQLDSA 240 (449)
Q Consensus 210 ~-~yg~D~lR~~ll~~--~~~~d~~fs~~~l~~~ 240 (449)
+ .|.|++++-|++.- +....--||.+.+.+.
T Consensus 279 ~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~ 312 (490)
T 4g6z_A 279 DAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEW 312 (490)
T ss_dssp HTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHH
T ss_pred HCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhh
Confidence 5 59999999999873 4444445888777653
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.70 E-value=3.5e-07 Score=94.43 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=119.9
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCc---------cccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTY---------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------ 76 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~---------~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~------ 76 (449)
+++.--...+.+.+.++|+.|||.+ |- ..+.|++.+.-.+++++|+++|+||. +||+..
T Consensus 48 tD~~R~~~~~~~~I~~~L~wlGl~w-Degp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~-----c~ct~eel~~~r 121 (498)
T 2ja2_A 48 TDAQRDSEESYLALLDALRWLGLDW-DEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYH-----AFSTPEEVEARH 121 (498)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHH
T ss_pred CCCcccChHHHHHHHHHHHHcCCCc-CCCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEE-----eCCCHHHHHHHH
Confidence 3444555678899999999999997 54 57889999999999999999999994 455421
Q ss_pred -------CCcccc----ccCccc-ccccCCCCC----ccc---------------ccccCccchhccccccCCCCcccCC
Q 013130 77 -------SPNYGR----LSGQRL-ENNRAGERV----AVD---------------SRKRNPADFALWKAAKAGEPSWDSP 125 (449)
Q Consensus 77 -------~~~yg~----ls~~~l-~~~~~g~~~----~~~---------------~~k~~~~Df~lwk~~~~~~~~w~s~ 125 (449)
.|.|.. ++.-.. .....|.+. .+. ..-....||++.|.
T Consensus 122 ~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~----------- 190 (498)
T 2ja2_A 122 VAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRA----------- 190 (498)
T ss_dssp HHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCT-----------
T ss_pred HHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEEEecccceEeecccccCcceeEcc-----------
Confidence 112211 111000 001112110 000 00011235555443
Q ss_pred CCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHH---HHhhc-----cCCCCCcEEEeeeeee-eCCcccc
Q 013130 126 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA---QSCAA-----CQDSNVSYWMHNGHVT-NNNEKMS 196 (449)
Q Consensus 126 WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a---~~~a~-----~~~~~~~~~~h~g~l~-~~G~KMS 196 (449)
.|.|.+|..|..- ....| ++.-+=|.| |+.+-+. ...++ +.+ .+.+ .|..+++ .+|+|||
T Consensus 191 --Dg~ptY~lA~vVD-D~~mg--ithviRG~D----~~~~t~~q~~l~~aL~~~g~g~~-~P~~-~h~plil~~~g~KLS 259 (498)
T 2ja2_A 191 --SGDPLYTLVNPCD-DALMK--ITHVLRGED----LLPSTPRQLALHQALIRIGVAER-IPKF-AHLPTVLGEGTKKLS 259 (498)
T ss_dssp --TSCBCHHHHHHHH-HHHTT--CCEEEEEGG----GGGGHHHHHHHHHHHHHTTSCCC-CCEE-EEECCEECSSSSBCC
T ss_pred --CCCcchhhHHHHH-hhhcC--CCEEEEChh----hhhccHHHHHHHHHHHhhcCCCC-CCeE-EEeeeeECCCCCccc
Confidence 2667777665421 22234 344456799 6555553 33555 443 3444 6877765 6899999
Q ss_pred ccCCCccCHHHHHH-hcChhHHHHHHhhc--C-cCCCcccCHHHHHH
Q 013130 197 KSLGNFFTIRQITE-RYHPLALRHFLISA--H-YRSPLNYSVLQLDS 239 (449)
Q Consensus 197 KSlGN~i~~~dll~-~yg~D~lR~~ll~~--~-~~~d~~fs~~~l~~ 239 (449)
|+.|+ +++.++.+ .|.|+++|.|+..- + ..+.--||.+.+.+
T Consensus 260 KR~g~-~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli~ 305 (498)
T 2ja2_A 260 KRDPQ-SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVA 305 (498)
T ss_dssp TTSGG-GBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHHH
T ss_pred ccCCc-ccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHh
Confidence 99999 58888887 49999999999773 2 22224456555543
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.12 E-value=3.7e-05 Score=79.96 Aligned_cols=199 Identities=20% Similarity=0.215 Sum_probs=117.9
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccc---------cccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC-------
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------- 76 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~---------rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~------- 76 (449)
++.--...|.+.+.++|+.|||.+ |--| +.|++.+.-++++++|+++|+|| .|||+..
T Consensus 67 D~~R~~~~~~~~I~~~L~wlGl~w-De~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY-----~C~ct~~el~~~r~ 140 (512)
T 4gri_A 67 DQSRYSPEAENDLYSSLKWLGISF-DEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAY-----YCYCSPERLERIKK 140 (512)
T ss_dssp CTTSCCHHHHHHHHHHHHHHTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCC-CcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcc-----ccccchHHHHHHHH
Confidence 344445678899999999999997 4322 67889999999999999999999 4565421
Q ss_pred -------CCcccc----ccCccccc-ccCCCCCcc------cc---------------cccCccchhccccccCCCCccc
Q 013130 77 -------SPNYGR----LSGQRLEN-NRAGERVAV------DS---------------RKRNPADFALWKAAKAGEPSWD 123 (449)
Q Consensus 77 -------~~~yg~----ls~~~l~~-~~~g~~~~~------~~---------------~k~~~~Df~lwk~~~~~~~~w~ 123 (449)
-+.|.. ++...... ...|.+..+ +. ......||+++|.
T Consensus 141 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~--------- 211 (512)
T 4gri_A 141 IQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDILLGRITWANKDISPDPVILKS--------- 211 (512)
T ss_dssp HHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECT---------
T ss_pred hhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCceeeccccceEEecccccCCceEEEec---------
Confidence 011211 11100000 001110000 00 0000112333221
Q ss_pred CCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeeee-CCccccccC
Q 013130 124 SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSL 199 (449)
Q Consensus 124 s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSl 199 (449)
.|.|.+|..|.. -....| ++.-+=|.| |..+.|.|. .|++.+ ++.+ .|+..++. +|+|+||+.
T Consensus 212 ----dg~PtY~fA~vV-DD~~mg--ITHViRG~D----~l~sTp~q~~l~~alg~~-~P~y-~H~pli~~~~g~kLSKR~ 278 (512)
T 4gri_A 212 ----DGLPTYHLANVV-DDYLMK--ITHVLRAQE----WVSSGPLHVLLYKAFKWK-PPIY-CHLPMVMGNDGQKLSKRH 278 (512)
T ss_dssp ----TSCBCHHHHHHH-HHHHTT--CSEEEEEGG----GGGGHHHHHHHHHHHTCC-CCEE-EEECCCBCTTSSBCCTTT
T ss_pred ----CCccccccccee-cccccC--Cceeccccc----cccccHHHHHHHHHcCCC-CCeE-EecchhccccccccCccc
Confidence 356777876632 122233 444455799 555555443 455444 4444 89898874 899999999
Q ss_pred CCccCHHHHHH-hcChhHHHHHHhh-c-CcCC-CcccCHHHHHHH
Q 013130 200 GNFFTIRQITE-RYHPLALRHFLIS-A-HYRS-PLNYSVLQLDSA 240 (449)
Q Consensus 200 GN~i~~~dll~-~yg~D~lR~~ll~-~-~~~~-d~~fs~~~l~~~ 240 (449)
|. ..+.++.+ .|-|+++.=|++. + ++.. .--||.+.|.+.
T Consensus 279 ~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~ 322 (512)
T 4gri_A 279 GS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQF 322 (512)
T ss_dssp SC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHH
T ss_pred cc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHH
Confidence 87 46777765 5999999988876 3 4444 356898888775
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.62 E-value=3.3e-05 Score=75.76 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=52.2
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
.+|+..+|.|+.+ |++.-.-....++..+ + +.+|+.++. .+|+|||||.||.|.+.| +||.+|..+++.
T Consensus 170 ~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~-p-~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQRK-IHMLARENLPRLGYSS-P-VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhHH-HHHHHHHHHHhcCCCC-c-eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 6899999999865 6655444444443333 2 337778875 699999999999999987 699999999874
No 38
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.82 E-value=0.00083 Score=68.10 Aligned_cols=69 Identities=23% Similarity=0.185 Sum_probs=51.0
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCc-cccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
..|+..||.|.. +|.+.-.-....++..+ + +.+++.+|. .+|. |||||.||.|.+.| +|+.++=++++.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~-~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSP-Q-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCC-C-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCC-c-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 478999999987 57765554444444433 2 335666665 5886 99999999999988 888888888764
No 39
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.82 E-value=0.0004 Score=67.90 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=51.0
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
..||.+||.|... |.+.-.-...-++..++ +-+++..|. .+|+|||||.||.|.+.| ++-+|+.++=++.+.
T Consensus 191 ~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQWG-NITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhHH-HHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 6899999999765 66654444444444332 224555554 489999999999999888 677888888777653
No 40
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=96.72 E-value=0.00096 Score=65.63 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=48.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhc---cC---CCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRH 219 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~---~~---~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~ 219 (449)
...|+..+|.|... |.+.-.-....+ ++ +.|.-+..|+..|. .+|.|||||.||.|.+.| +|+.++=
T Consensus 152 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 46899999999766 665444333322 13 22333333445554 589999999999999888 8888888
Q ss_pred HHhhc
Q 013130 220 FLISA 224 (449)
Q Consensus 220 ~ll~~ 224 (449)
.+.+.
T Consensus 226 Ki~~a 230 (340)
T 2g36_A 226 TILRM 230 (340)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 88764
No 41
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.58 E-value=0.0011 Score=66.41 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred CccEEeecccCcCchhHHHHHHHhhc---c---C-----CC----CCcEEEeeeeee-eCCccccccCCCccCHHHHHHh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAA---C---Q-----DS----NVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 211 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~---~---~-----~~----~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~ 211 (449)
..|+..||.|. .+|.+.-+=...-. + + .| .+.+-+++.+|+ .+|+|||||.||.|.+.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 58999999998 45665433222111 1 0 01 123446667765 599999999999998776 33
Q ss_pred cChhHHHHHHhhc
Q 013130 212 YHPLALRHFLISA 224 (449)
Q Consensus 212 yg~D~lR~~ll~~ 224 (449)
-+|+.++=++++.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 5677777677654
No 42
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.49 E-value=0.001 Score=65.85 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
..|+..||.|... |.+.-.-...-++..++ +.+++.+|. .+|+|||||.||.|.+.| +.-+|+.++=++++.
T Consensus 210 ~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 6899999999765 66655444444444332 335556664 599999999999998877 466788888888763
No 43
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=96.44 E-value=0.023 Score=55.75 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhc---cCC--CCCcEEEee---eeee-eCC-ccccccCCCccCHHHHHHhcChhH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 216 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~---~~~--~~~~~~~h~---g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~ 216 (449)
...|+..+|.|... |.+.-.-....+ ++. +.+.. +|+ ..|. .+| +|||||.||.|.+.| +|+.
T Consensus 140 ~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~ 212 (337)
T 2el7_A 140 YKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEES 212 (337)
T ss_dssp TTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHH
T ss_pred hCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCee-ecccccccccCCCCccccCCCCCCeeeCcC-----CHHH
Confidence 35799999999776 665443333222 121 22333 333 3444 589 999999999998876 4777
Q ss_pred HHHHHhhc
Q 013130 217 LRHFLISA 224 (449)
Q Consensus 217 lR~~ll~~ 224 (449)
++=.+.+.
T Consensus 213 i~~Ki~~a 220 (337)
T 2el7_A 213 IWQKIQHL 220 (337)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 87777764
No 44
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.38 E-value=0.0013 Score=66.45 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=49.2
Q ss_pred CccEEeecccCcCchhHHHHHHHhhc-cCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~-~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
..|+..||.|..+ |.+.-.=...-. +..++ +-+++.++. .+|+|||||.||.|.+.| +.-+|+.++=++++
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 6899999999765 665544444444 44332 335656665 599999999999998776 45567777766665
No 45
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.36 E-value=0.0012 Score=66.69 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=49.8
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCC-ccCHHHHHHhcChhHHHHHHhhc
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
..|+..||.|..+ |.+.-.=...-++..++ +-+++-++. .+|+|||||.|| .|.+.| ++-+|+.++=++++.
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 6899999999765 65544433333444332 335556665 599999999999 888776 456778887777763
No 46
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.28 E-value=0.0019 Score=65.25 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=48.5
Q ss_pred CccEEeecccCcCchhHHHHHHHhhc-cCCCCCcEEEeeeeee-eCCccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~-~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
..|+..||.|..+ |.+.-+=...-. +..++ +-+++.++. .+|+|||||.||.|.+.+ +.-+|+.++=++++
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWIN 257 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 6899999999765 655544444444 33332 335656665 599999999999998876 45577777777765
No 47
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=96.26 E-value=0.0024 Score=63.62 Aligned_cols=69 Identities=20% Similarity=0.039 Sum_probs=40.3
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCC-ccCHHHHHHhcChhHHHHHHhh
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll~ 223 (449)
...|+..+|.|... |.+.-+-....++..+ + +.+|+.++. .+|+|||||.|| .|.+.| +|+.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK-IFTFAEKYLPALGYSK-R-VHLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred hcCCEEEcChhHHH-HHHHHHHHHHHcCCCC-C-EEEecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHH
Confidence 35789999999654 5554444444443333 2 335667765 689999999999 688766 47778777766
No 48
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=96.01 E-value=0.0021 Score=62.78 Aligned_cols=71 Identities=24% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCccEEeecccCcCchhHHHH--HHHhhc-cCC--CCCcEEE--eeeeee-eCCccccccCCCccCHHHHHHhcChhHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEI--AQSCAA-CQD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALR 218 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~--a~~~a~-~~~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR 218 (449)
...|+..+|.|... |++.-. |.-... +++ +.+...+ ++.+|. .+|+|||||.||.|.+.| +++.++
T Consensus 138 ~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 36799999999765 665433 332221 121 1222212 234444 589999999999998876 677777
Q ss_pred HHHhh
Q 013130 219 HFLIS 223 (449)
Q Consensus 219 ~~ll~ 223 (449)
=.+.+
T Consensus 212 ~KI~~ 216 (322)
T 3tzl_A 212 KQISS 216 (322)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77765
No 49
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0027 Score=63.77 Aligned_cols=69 Identities=19% Similarity=0.057 Sum_probs=37.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eC-CccccccCCCc-cCHHHHHHhcChhHHHHHHhh
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-NEKMSKSLGNF-FTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-G~KMSKSlGN~-i~~~dll~~yg~D~lR~~ll~ 223 (449)
..+|+..+|.|+.. |+..-+-....++..+ + +.+|+.+|. .+ |+|||||.||. |.+.| +++.+|=-+.+
T Consensus 181 ~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~k 252 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK-IFVLAEENLPSLGYKK-R-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKINS 252 (394)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHHH
T ss_pred hCCCEEecCccHHH-HHHHHHHHHHHcCCCC-C-EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHHH
Confidence 46899999999654 5554444444444333 3 336767765 58 99999999996 88766 46677766665
No 50
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=95.49 E-value=0.006 Score=60.19 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=44.1
Q ss_pred CccEEeecccCcCchhHHHHHHHhhc---cC---CCCCcEEEeeeeee-eCCc-cccccCCCccCHHHHHHhcChhHHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRH 219 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~---~~---~~~~~~~~h~g~l~-~~G~-KMSKSlGN~i~~~dll~~yg~D~lR~ 219 (449)
..|+..+|.|... |.+.-.-....+ ++ +.|.-++.|+..|. .+|. |||||.||.|.+.| +|+.++=
T Consensus 162 ~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~~ 235 (351)
T 1yi8_B 162 GATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVAR 235 (351)
T ss_dssp TCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHHH
T ss_pred CCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHHH
Confidence 5799999999766 655443333222 23 22322322344444 4887 99999999988766 3677776
Q ss_pred HHhh
Q 013130 220 FLIS 223 (449)
Q Consensus 220 ~ll~ 223 (449)
.+.+
T Consensus 236 Ki~~ 239 (351)
T 1yi8_B 236 KVMG 239 (351)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6665
No 51
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=95.22 E-value=0.012 Score=57.27 Aligned_cols=64 Identities=28% Similarity=0.392 Sum_probs=41.8
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC-ccccccCCCccCHHHHHHhcChhHHHHHHhh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN-EKMSKSLGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
..|+..||.|... |.+ .+.-.+ . +.+ +.+|+..|. .+| +|||||.||.|.+.| +++.+|==+.+
T Consensus 163 ~~~~v~~G~DQ~~-~~~--l~R~i~--~-~~~-~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~i~~KI~~ 228 (314)
T 2zp1_A 163 GVDVAVGGMEQRK-IHM--LARELL--P-KKV-VCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEEIRAKIKK 228 (314)
T ss_dssp TCSEEEEEGGGHH-HHH--HHHHHS--S-SCC-EEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHHHHHHHHH
T ss_pred CCCEEEcChhHHH-HHH--HHHHhc--C-CCc-EEeeccccccCCcccccCCCCcceecCCC-----CHHHHHHHHHh
Confidence 5799999999766 432 222222 2 222 336766665 589 799999999998766 45556555554
No 52
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=94.95 E-value=0.013 Score=58.21 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=44.4
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-e-CCc-cccccC-CCccCHHHHHHhcChhHHHHHHhh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NNE-KMSKSL-GNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G~-KMSKSl-GN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
..|+..||.|..+ |++.-.-...-++.. +.-+.+++.+|. . +|. |||||. ||.|.+.| +++.++==+.+
T Consensus 200 ~ad~vpgG~DQ~~-~l~l~Rdla~r~~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~KI~k 272 (373)
T 3vgj_A 200 NVDICQLGIDQRK-VNMLAREYCDIKKIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRKIKK 272 (373)
T ss_dssp TCSEECCBGGGHH-HHHHHHHHHHHHTCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEcchhhHH-HHHHHHHHHHHhCCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHHHHh
Confidence 5799999999765 655444333334333 222446777775 3 784 999999 57888755 55666655554
No 53
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=94.90 E-value=0.01 Score=58.86 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=47.0
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eC-----------------Ccccccc-CCCccCHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-----------------NEKMSKS-LGNFFTIRQ 207 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-----------------G~KMSKS-lGN~i~~~d 207 (449)
...|+..||.|... |++.-.-....++..++ +.+|+..|. .+ |+||||| .||.|.+.|
T Consensus 176 ~~~~~v~~G~DQ~~-~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d 252 (364)
T 2cya_A 176 MDLDIALGGMDQRK-AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD 252 (364)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC
T ss_pred cCCCEEeccchHHH-HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC
Confidence 46799999999765 66555555444443332 336766665 45 7999999 789998876
Q ss_pred HHHhcChhHHHHHHhh
Q 013130 208 ITERYHPLALRHFLIS 223 (449)
Q Consensus 208 ll~~yg~D~lR~~ll~ 223 (449)
+|+.++=.+.+
T Consensus 253 -----~p~~i~~Ki~~ 263 (364)
T 2cya_A 253 -----SDDDIRRKIRK 263 (364)
T ss_dssp -----CHHHHHHHHHT
T ss_pred -----CHHHHHHHHHh
Confidence 47777777766
No 54
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=94.82 E-value=0.021 Score=56.82 Aligned_cols=67 Identities=7% Similarity=-0.114 Sum_probs=43.8
Q ss_pred ccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCc-ccccc-CCCccCHHHHHHhcChhHHHHHHhh
Q 013130 149 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKS-LGNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 149 ~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKS-lGN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
.++-.+|.|..+ |.+.-.-...-++.+++ +.+++.+|. .+|. ||||| .||.|.+.| +++.++=-+.+
T Consensus 225 a~~VpvG~DQ~~-hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 225 RCLVLDSIKNVQ-FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred ccccccccchHH-HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 455556999765 76655444444444444 335666665 5885 99999 899998766 56666655554
No 55
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=94.45 E-value=0.015 Score=56.79 Aligned_cols=74 Identities=20% Similarity=0.051 Sum_probs=42.9
Q ss_pred hcCCCccEEeecccCcCchhHHHHHHHhhcc---CC--CCCcEEE--eeeeee-eCC--ccccccCCC-c--cCHHHHHH
Q 013130 144 YLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWM--HNGHVT-NNN--EKMSKSLGN-F--FTIRQITE 210 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~---~~--~~~~~~~--h~g~l~-~~G--~KMSKSlGN-~--i~~~dll~ 210 (449)
++-...|+..+|.|... |.+.-.-....++ +. +.+..++ ++..|. .+| +|||||.|| . |.+.|
T Consensus 133 il~~~~~~vpvG~DQ~~-~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d--- 208 (328)
T 1i6k_A 133 ILLYNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD--- 208 (328)
T ss_dssp HHTTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC---
T ss_pred HHHhCCCEEecccchHH-HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC---
Confidence 33346899999999776 6654433332222 21 2233323 233443 578 899999999 6 76654
Q ss_pred hcChhHHHHHHhh
Q 013130 211 RYHPLALRHFLIS 223 (449)
Q Consensus 211 ~yg~D~lR~~ll~ 223 (449)
+++.++==+.+
T Consensus 209 --~~~~i~~KI~~ 219 (328)
T 1i6k_A 209 --DAKTIEKKIKS 219 (328)
T ss_dssp --CHHHHHHHHHH
T ss_pred --CHHHHHHHHHh
Confidence 45555544444
No 56
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=94.30 E-value=0.025 Score=56.31 Aligned_cols=71 Identities=21% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhccCC-------CCCcEEEeeeeee-eCC------------------ccccccC-
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-------SNVSYWMHNGHVT-NNN------------------EKMSKSL- 199 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-------~~~~~~~h~g~l~-~~G------------------~KMSKSl- 199 (449)
...|+..||.|.. +|++.-.-...-++.. .+.-+.+|+..|. .+| .|||||.
T Consensus 179 ~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~ 257 (375)
T 2cyc_A 179 QGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKP 257 (375)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCG
T ss_pred hCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCC
Confidence 3579999999987 5776554444444330 1122446666665 476 8999999
Q ss_pred CCccCHHHHHHhcChhHHHHHHhh
Q 013130 200 GNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 200 GN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
+|.|.+.| +|+.+|=.+.+
T Consensus 258 ~~~I~L~d-----~p~~i~~KI~~ 276 (375)
T 2cyc_A 258 YSAVFIHD-----SPEEIRQKLRK 276 (375)
T ss_dssp GGSCBTTC-----CHHHHHHHHHH
T ss_pred CCeeccCC-----CHHHHHHHHHH
Confidence 78888776 47777777766
No 57
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=94.26 E-value=0.015 Score=58.26 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=32.5
Q ss_pred ccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCCccCHHHHHHhcChhHHHHHHh
Q 013130 149 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGNFFTIRQITERYHPLALRHFLI 222 (449)
Q Consensus 149 ~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 222 (449)
.++..||.|..+ |...-.-...-++.+++ -+ +++-+|. .+| .|||||.||.|.+.| +|+.++==+.
T Consensus 225 ~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI~ 293 (395)
T 3i05_A 225 FCLIPQAIDQDP-YFRLTRDIAPRLGYLKP-AV-IHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKIN 293 (395)
T ss_dssp EEEEEEEGGGHH-HHHHHHHTHHHHTCCCC-EE-EEECCCCCC-------------CCBTTC-----CHHHHHHHHC
T ss_pred ceEEEeccchHH-HHHHHHHHHHHcCCCCc-ee-eccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHHH
Confidence 779999999765 65544333333444333 23 5666665 588 799999999997665 5555554443
No 58
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=94.07 E-value=0.024 Score=55.73 Aligned_cols=76 Identities=17% Similarity=0.026 Sum_probs=45.0
Q ss_pred HhhcCCCccEEeecccCcCchhHHHHHHHhhcc---CC--CCCcEEEe--eeeee-eCC--ccccccCCC---ccCHHHH
Q 013130 142 AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMH--NGHVT-NNN--EKMSKSLGN---FFTIRQI 208 (449)
Q Consensus 142 ~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~---~~--~~~~~~~h--~g~l~-~~G--~KMSKSlGN---~i~~~dl 208 (449)
...+-...|+..+|.|... |.+.-.-....++ +. +.+..++. +..|. .+| +|||||.|| .|.+.|
T Consensus 141 aDil~~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D- 218 (348)
T 2yy5_A 141 GDILLYQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD- 218 (348)
T ss_dssp HHHHTTCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC-
T ss_pred HHHHHhCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC-
Confidence 3344456899999999776 6655443333332 31 22334221 23333 477 899999999 787665
Q ss_pred HHhcChhHHHHHHhh
Q 013130 209 TERYHPLALRHFLIS 223 (449)
Q Consensus 209 l~~yg~D~lR~~ll~ 223 (449)
+++.+|==+.+
T Consensus 219 ----~~~~i~~KI~~ 229 (348)
T 2yy5_A 219 ----PKEVVVKKIRQ 229 (348)
T ss_dssp ----CHHHHHHHHHT
T ss_pred ----CHHHHHHHHHh
Confidence 45555544444
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=93.97 E-value=0.026 Score=55.59 Aligned_cols=68 Identities=16% Similarity=0.005 Sum_probs=43.0
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-e-CC-ccccccC-CCccCHHHHHHhcChhHHHHHHhh
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSL-GNFFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSl-GN~i~~~dll~~yg~D~lR~~ll~ 223 (449)
..|+..||.|... |++.-.-....++.. ++-+ +++.++. . +| .|||||. ||.|.+.| +++.++==+.+
T Consensus 186 ~~~~~~~G~DQ~~-~i~l~Rdia~r~~~~-~p~~-~~~~~l~gL~dg~~KMSKS~~~~~I~L~d-----~p~~i~kKI~k 257 (348)
T 2j5b_A 186 GIDICQLGIDQRK-VNMLAIEYANDRGLK-IPIS-LSHHMLMSLSGPKKKMSKSDPQGAIFMDD-----TEQEVSEKISR 257 (348)
T ss_dssp CCSEECCBGGGHH-HHHHHHHHHHHTTCC-CCEE-EEBCCCCCTTCSSCCCSTTCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEeccChHH-HHHHHHHHHHHhCCC-Ccee-ecCccccCCCCcccccccCCCCCeEeecC-----CHHHHHHHHhc
Confidence 5799999999764 665444333344333 3333 6766665 4 67 7999999 68887655 45555544444
No 60
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=93.53 E-value=0.03 Score=56.14 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=38.1
Q ss_pred CCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccC-CCccCHHH
Q 013130 146 SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSL-GNFFTIRQ 207 (449)
Q Consensus 146 g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSl-GN~i~~~d 207 (449)
++..++..||.|..+ |.+.-.-...-++.+++ .+ +++.+|. .+| .|||||. ||.|.+.|
T Consensus 241 ~~~a~lvpvG~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 241 KGAMCLVPAAVDQDP-FFRLARDKAKALGEKKP-SS-IYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TTCEEEEEEEGGGHH-HHHHHHHHHHHHTCCCC-EE-EEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred cCCCeEEeeccchHH-HHHHHHHHHHHcCCCCc-ee-eccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 445678889999765 66554433333443333 23 4666665 588 6999999 78887655
No 61
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.46 E-value=0.027 Score=57.00 Aligned_cols=57 Identities=12% Similarity=-0.079 Sum_probs=31.6
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 207 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 207 (449)
..++..||.|..+ |.+.-.-....++.+.+ .. +++.+|. .+| .|||||.|| .|.+.|
T Consensus 249 ~~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 249 TPCLIPCAIDQDP-YFRVCRDVADKLKYSKP-AL-LHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp CCEEEEEEGGGHH-HHHHHHHHHHHHTSCCC-EE-EEECCCCCTTC--------CGGGCCBTTC
T ss_pred CceEEEeccCcHH-HHHHHHHHHHHhCCCCc-ee-eccccccCCCCCccccCCCCCCCeEeccC
Confidence 4567779999765 65544444344443322 34 5666665 588 899999999 787665
No 62
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.046 Score=54.54 Aligned_cols=56 Identities=14% Similarity=-0.042 Sum_probs=36.4
Q ss_pred ccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHH
Q 013130 149 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 207 (449)
Q Consensus 149 ~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 207 (449)
.|+-.+|.|..+ |.+.-.-...-++.+.+. . +++.+|. .+| .|||||.+| .|.+.|
T Consensus 208 a~~vpvG~DQ~~-hl~l~Rdla~r~n~~~p~-~-l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDP-YWRLQRDFAESLGYYKTA-A-LHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHH-HHHHHHHHTGGGTSCCCE-E-EEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHH-HHHHHHHHHHHcCCCCCe-e-eecccccCCCCCccccccCCCCCeeeCCC
Confidence 577799999764 666544444444433333 3 4556665 577 599999998 886544
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=92.96 E-value=0.044 Score=58.71 Aligned_cols=56 Identities=18% Similarity=-0.006 Sum_probs=36.2
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-e-CC-ccccccCC-CccCH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSLG-NFFTI 205 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSlG-N~i~~ 205 (449)
..|+..||.|..+ |.+.-.-...-++.. +.-+.+++.+|. . +| +|||||.+ |.|.+
T Consensus 183 ~ad~vpvG~DQ~~-~l~l~Rdla~r~n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 183 KADICQLGLDQRK-VNMLAREYCDLIGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp TCSEECCBGGGHH-HHHHHHHHHHHTTCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred CCCEEeccccHHH-HHHHHHHHHHHhCCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 5799999999765 655444333334333 222346767775 4 78 49999998 67753
No 64
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=92.80 E-value=0.035 Score=55.41 Aligned_cols=55 Identities=16% Similarity=-0.037 Sum_probs=25.3
Q ss_pred cEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHH
Q 013130 150 DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 207 (449)
Q Consensus 150 Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 207 (449)
++..||.|..+ |.+.-.-...-++.+++ .+ +|+.+|. .+| .|||||.+| .|.+.|
T Consensus 222 ~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP-YFRMVRDVAPRLGYLKP-SS-IHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH-HHHHHHHHTGGGTCCCC-EE-EEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH-HHHHHHHHHHHcCCCCc-ee-eccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 34579999764 66544444333443333 23 5667775 588 799999998 776654
No 65
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=92.29 E-value=0.054 Score=54.78 Aligned_cols=66 Identities=12% Similarity=-0.040 Sum_probs=39.3
Q ss_pred cEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHHHHHhcChhHHHHHHhh
Q 013130 150 DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQITERYHPLALRHFLIS 223 (449)
Q Consensus 150 Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll~ 223 (449)
++..+|.|..+ |.+.-.-....++.+. +.+ +++-+|. .+| .|||||.|| .|.+.| +|+.++==+.+
T Consensus 258 ~lVpvG~DQ~~-~i~l~Rdla~r~~~~~-P~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D-----~p~~I~kKI~~ 327 (437)
T 1r6u_A 258 CLIPCAIDQDP-YFRMTRDVAPRIGYPK-PAL-LHSTFFPALQGAQTKMSASDPNSSIFLTD-----TAKQIKTKVNK 327 (437)
T ss_dssp EEEEEEGGGHH-HHHHHHHHGGGGTCCC-CEE-EEECCCEETTEEEEECCTTSSSSCCBTTC-----CHHHHHHHHHH
T ss_pred eEEEeehhhHH-HHHHHHHHHHHhCCCC-ceE-eecccccCCCCCccccCCCCCCCeeeccC-----CHHHHHHHhhc
Confidence 44447999765 5544443333343332 234 5666665 588 899999999 787665 44455443433
No 66
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=91.39 E-value=0.055 Score=53.84 Aligned_cols=71 Identities=21% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhcc---CCCC--CcEEEee--eeee-e-CC-ccccccC---CCccCHHHHHHhcC
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAAC---QDSN--VSYWMHN--GHVT-N-NN-EKMSKSL---GNFFTIRQITERYH 213 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~---~~~~--~~~~~h~--g~l~-~-~G-~KMSKSl---GN~i~~~dll~~yg 213 (449)
...|+..+|.|..+ |++.-.-...-++ ++.+ +.-+++. ..+. . +| +|||||. ||.|.+.| +
T Consensus 170 ~~ad~vPvG~DQ~~-hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D-----~ 243 (388)
T 3prh_A 170 YGTDLVPPGEDQKQ-HLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD-----E 243 (388)
T ss_dssp TTCCEECCCSSCHH-HHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC-----C
T ss_pred hCCCEEEechhHHH-HHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC-----C
Confidence 46799999999875 7655433332222 2221 1111211 1221 2 44 7999999 89997655 4
Q ss_pred hhHHHHHHhh
Q 013130 214 PLALRHFLIS 223 (449)
Q Consensus 214 ~D~lR~~ll~ 223 (449)
++.+|==+.+
T Consensus 244 p~~I~kKI~k 253 (388)
T 3prh_A 244 PKQLEKKIKS 253 (388)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 5555544444
No 67
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=91.17 E-value=0.072 Score=53.97 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=33.5
Q ss_pred EEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCc--cccccCCC-ccCHHH
Q 013130 151 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE--KMSKSLGN-FFTIRQ 207 (449)
Q Consensus 151 ih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~--KMSKSlGN-~i~~~d 207 (449)
+-.+|.|..+ |++.-.-....++.++ +.+ +++.+|. .+|. |||||.+| .|.+.|
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rfn~~~-p~~-~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRMGHPK-NAY-LLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTTTSCC-CEE-EEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchHH-HHHHHHHHHHHhCCCC-Cee-ecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 6678999875 6665444433343333 334 5666664 4764 99999998 665433
No 68
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=91.12 E-value=0.091 Score=53.80 Aligned_cols=55 Identities=15% Similarity=-0.035 Sum_probs=34.8
Q ss_pred cEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHH
Q 013130 150 DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 207 (449)
Q Consensus 150 Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 207 (449)
++..+|.|..+ |.+.-.-....++.+.+ .. +++-+|. .+| .|||||.|| .|.+.|
T Consensus 305 ~~VpvG~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 305 CLIPCAIDQDP-YFRMTRDVAPRIGYPKP-AL-LHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEEEEEGGGHH-HHHHHHHHGGGGTCCCC-EE-EEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred eeEeccccHHH-HHHHHHHHHHHhCCCCc-ee-eecccccCCCCCccccCCCCCCCceeecC
Confidence 34447999765 65544444344443322 34 5666665 588 899999999 787655
No 69
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=88.19 E-value=0.13 Score=50.38 Aligned_cols=71 Identities=23% Similarity=0.127 Sum_probs=39.9
Q ss_pred CCccEEeecccCcCchhHHH--HHHHhhc-cC---CC--CCcEEEe--eeeee-e-CC-ccccccC---CCccCHHHHHH
Q 013130 147 SKFDIHGGGIDLIFPHHENE--IAQSCAA-CQ---DS--NVSYWMH--NGHVT-N-NN-EKMSKSL---GNFFTIRQITE 210 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~--~a~~~a~-~~---~~--~~~~~~h--~g~l~-~-~G-~KMSKSl---GN~i~~~dll~ 210 (449)
...|+..+|.|..+ |++.- +|.-... ++ +. .+..+++ +..+. . +| +|||||. ||.|.+.|
T Consensus 142 ~~ad~vpvG~DQ~~-hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D--- 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQ-HLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE--- 217 (341)
T ss_dssp TTCSEECCCGGGHH-HHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC---
T ss_pred cCCCEEEeccchHH-HHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC---
Confidence 46799999999776 66543 3333221 12 11 1222233 12332 3 57 6999999 78997655
Q ss_pred hcChhHHHHHHhh
Q 013130 211 RYHPLALRHFLIS 223 (449)
Q Consensus 211 ~yg~D~lR~~ll~ 223 (449)
+++.+|==+.+
T Consensus 218 --~p~~i~kKI~~ 228 (341)
T 3sz3_A 218 --DPKSIIKKINK 228 (341)
T ss_dssp --CHHHHHHHHHT
T ss_pred --CHHHHHHHhhh
Confidence 45555544444
No 70
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=87.94 E-value=0.23 Score=48.68 Aligned_cols=71 Identities=21% Similarity=0.136 Sum_probs=38.7
Q ss_pred CCccEEeecccCcCchhHHH--HHHHhhc-cCCC--CCcEEEe--eeeee-e-CC-ccccccCC---CccCHHHHHHhcC
Q 013130 147 SKFDIHGGGIDLIFPHHENE--IAQSCAA-CQDS--NVSYWMH--NGHVT-N-NN-EKMSKSLG---NFFTIRQITERYH 213 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~--~a~~~a~-~~~~--~~~~~~h--~g~l~-~-~G-~KMSKSlG---N~i~~~dll~~yg 213 (449)
...|+..+|.|..+ |++.- +|.-... +++. .+..+++ +..+. . +| +|||||.+ |.|.+.| +
T Consensus 151 ~~ad~vpvG~DQ~~-hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D-----~ 224 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQ-HLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE-----D 224 (346)
T ss_dssp TTCSEECCCGGGHH-HHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS-----C
T ss_pred hCceEEEeccchHH-HHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC-----C
Confidence 46799999999775 66543 3333221 1221 1222232 12222 3 67 59999997 6786654 4
Q ss_pred hhHHHHHHhh
Q 013130 214 PLALRHFLIS 223 (449)
Q Consensus 214 ~D~lR~~ll~ 223 (449)
++.+|==+.+
T Consensus 225 p~~i~kKI~k 234 (346)
T 3n9i_A 225 PKSVVKKIKR 234 (346)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4555544433
No 71
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=83.71 E-value=0.76 Score=45.44 Aligned_cols=60 Identities=12% Similarity=-0.075 Sum_probs=35.1
Q ss_pred CCCccEEeecccCcCchhHHHHHHHhhccC---CCCCcEEEeeeeee-eCCccccccCC-CccCHHH
Q 013130 146 SSKFDIHGGGIDLIFPHHENEIAQSCAACQ---DSNVSYWMHNGHVT-NNNEKMSKSLG-NFFTIRQ 207 (449)
Q Consensus 146 g~~~Dih~~GkDli~~H~~~~~a~~~a~~~---~~~~~~~~h~g~l~-~~G~KMSKSlG-N~i~~~d 207 (449)
|+...+-..|.|..+ |.+.-.-...-++. .+.+.. +|+-++. .+|.|||||.. |.|.+.|
T Consensus 206 gy~a~~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P~~-~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 206 GYRHVVVPVGADQDP-HLRLTRDLADRMAGVVELERPAS-TYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CCCCEEEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCCEE-EEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred CccceecccchhhHH-HHHHHHHHHHHhcCcccccChhh-hhhcccCCCCCCccCCCCCCcccccCC
Confidence 334445666999765 77765444333332 222333 4555554 58999999984 5675543
No 72
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=31.51 E-value=1.4e+02 Score=23.23 Aligned_cols=58 Identities=5% Similarity=0.100 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEeC
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFAV 74 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~ 74 (449)
+.++..+.+++....-.+.+.+..|...+ ....|.+.+..|.+.|+++...|.++|=.
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~~V~ 74 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEe
Confidence 34455566666666666766566654432 23568999999999999999999888843
No 73
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=29.40 E-value=1.7e+02 Score=23.23 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEeC
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFAV 74 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~ 74 (449)
+.++..+.+++....-.+.+.+..|...+ ....|.+.+..|.+.|+++...|.++|=.
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEEe
Confidence 44555566666666666666566663332 23579999999999999999998888843
No 74
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=26.30 E-value=1.8e+02 Score=23.26 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEe
Q 013130 19 NRYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFA 73 (449)
Q Consensus 19 ~~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~ 73 (449)
++..+.+++....-.+.+.+..|...+ .-..|.+.+..|...|+++...|.++|=
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~V 68 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFV 68 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEEE
Confidence 344455555555556665565654432 2356899999999999999998888883
No 75
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=26.09 E-value=1.9e+02 Score=23.03 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEeC
Q 013130 17 LSNRYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFAV 74 (449)
Q Consensus 17 ~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~~ 74 (449)
+.++..+.+++....-.+.+.+..|...+ .-..|.+.+..|...|+++...|.++|=.
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~ 76 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFIT 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEc
Confidence 34455566666666656666566655543 33568999999999999999999888844
No 76
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=24.58 E-value=1e+02 Score=24.87 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEe
Q 013130 23 QEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFA 73 (449)
Q Consensus 23 ~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~ 73 (449)
+.+++....=.+.+-+..|...+ ....|.+.+..|...|+++...|.++|=
T Consensus 21 ~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 21 QKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 34444444445555555553322 3357999999999999999999988883
Done!