Query 013130
Match_columns 449
No_of_seqs 289 out of 2496
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 04:46:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1li5a2 c.26.1.1 (A:1-315) Cys 100.0 2.3E-42 1.7E-46 339.6 21.7 242 1-242 72-314 (315)
2 d1pfva2 c.26.1.1 (A:4-140,A:17 100.0 1.7E-37 1.2E-41 308.4 17.6 238 2-242 54-344 (350)
3 d1rqga2 c.26.1.1 (A:1-138,A:17 100.0 4.2E-34 3.1E-38 284.1 15.1 233 1-242 54-358 (361)
4 d2d5ba2 c.26.1.1 (A:1-348) Met 100.0 2.6E-33 1.9E-37 277.0 18.0 242 1-243 54-347 (348)
5 d1ivsa4 c.26.1.1 (A:1-189,A:34 100.0 9E-32 6.5E-36 273.8 13.8 230 2-242 86-424 (425)
6 d1ffya3 c.26.1.1 (A:1-200,A:39 100.0 1.6E-30 1.1E-34 266.8 18.7 231 1-242 99-449 (450)
7 d1ilea3 c.26.1.1 (A:1-197,A:38 100.0 2.3E-29 1.7E-33 257.6 14.6 229 1-242 89-451 (452)
8 d1h3na3 c.26.1.1 (A:1-225,A:41 99.8 7.4E-21 5.4E-25 195.9 17.3 75 1-76 84-162 (494)
9 d1irxa2 c.26.1.1 (A:3-319) Cla 99.7 1.1E-18 7.8E-23 167.0 5.5 108 122-233 205-316 (317)
10 d1f7ua2 c.26.1.1 (A:136-483) A 99.5 3.8E-13 2.7E-17 131.8 15.4 181 14-238 131-344 (348)
11 d1iq0a2 c.26.1.1 (A:97-466) Ar 99.3 7.2E-13 5.2E-17 130.9 8.0 221 7-238 110-367 (370)
12 d1j09a2 c.26.1.1 (A:1-305) Glu 99.2 2.9E-11 2.1E-15 115.9 13.4 210 14-238 45-290 (305)
13 d1rqga1 a.27.1.1 (A:397-606) M 99.2 3.8E-11 2.8E-15 108.9 9.7 119 242-363 2-124 (210)
14 d2d5ba1 a.27.1.1 (A:349-500) M 99.1 3.8E-11 2.8E-15 103.3 6.9 114 242-362 3-119 (152)
15 d1pfva1 a.27.1.1 (A:389-550) M 99.1 4.1E-10 3E-14 97.7 11.5 111 246-362 3-118 (162)
16 d1nzja_ c.26.1.1 (A:) Glutamyl 98.5 1.6E-07 1.2E-11 88.4 10.4 161 13-200 45-231 (286)
17 d1li5a1 a.27.1.1 (A:316-402) C 98.2 1.9E-06 1.4E-10 65.9 8.2 60 280-352 22-81 (87)
18 d1ffya1 a.27.1.1 (A:645-917) I 97.9 6.5E-06 4.7E-10 76.5 6.2 116 244-362 1-127 (273)
19 d1gtra2 c.26.1.1 (A:8-338) Glu 97.8 0.00021 1.5E-08 67.9 16.4 213 12-240 61-323 (331)
20 d1ivsa2 a.27.1.1 (A:579-796) V 97.7 6.5E-05 4.7E-09 67.1 9.4 112 245-363 2-117 (218)
21 d1ilea1 a.27.1.1 (A:642-821) I 97.4 0.00022 1.6E-08 61.6 9.1 116 244-362 2-128 (180)
22 d1h3na1 a.27.1.1 (A:687-814) L 97.3 0.00028 2E-08 57.2 7.7 78 269-362 30-108 (128)
23 d1h3fa1 c.26.1.1 (A:5-347) Tyr 96.5 0.00078 5.7E-08 64.1 4.5 69 148-224 183-253 (343)
24 d1f7ua1 a.27.1.1 (A:484-607) A 96.4 0.0081 5.9E-07 48.0 9.2 79 272-352 42-121 (124)
25 d1jila_ c.26.1.1 (A:) Tyrosyl- 96.0 0.0021 1.5E-07 60.3 4.2 58 148-207 185-243 (323)
26 d1iq0a1 a.27.1.1 (A:467-592) A 95.6 0.033 2.4E-06 44.4 9.7 79 272-352 37-123 (126)
27 d1j1ua_ c.26.1.1 (A:) Tyrosyl- 94.2 0.0069 5E-07 56.3 1.7 53 148-207 163-217 (306)
28 d2ts1a_ c.26.1.1 (A:) Tyrosyl- 92.4 0.049 3.5E-06 50.5 4.5 58 148-207 185-243 (319)
29 d1n3la_ c.26.1.1 (A:) Tyrosyl- 86.5 0.15 1.1E-05 47.4 2.8 73 143-223 170-244 (339)
30 d1r6ta2 c.26.1.1 (A:82-467) Tr 70.5 1.1 7.9E-05 42.1 3.1 56 149-207 223-282 (386)
31 d1hw1a1 a.4.5.6 (A:5-78) Fatty 58.4 17 0.0013 24.8 7.0 57 13-72 3-66 (74)
32 d1i6la_ c.26.1.1 (A:) Tryptoph 55.6 1.5 0.00011 40.0 0.9 54 147-201 136-199 (326)
33 d3bwga1 a.4.5.6 (A:5-82) Trans 51.2 15 0.0011 25.3 5.7 27 47-73 36-62 (78)
34 d1lvaa3 a.4.5.35 (A:511-574) C 44.3 21 0.0015 23.6 5.3 27 47-73 37-63 (64)
35 d1ysja1 c.56.5.4 (A:4-177,A:29 37.5 14 0.00098 32.2 4.2 38 378-415 5-47 (261)
36 d1jhfa1 a.4.5.2 (A:2-72) LexA 33.7 33 0.0024 23.1 5.0 34 24-67 26-59 (71)
37 d1dpua_ a.4.5.16 (A:) C-termin 27.9 40 0.0029 22.7 4.5 28 47-74 38-66 (69)
38 d1vi7a2 d.58.11.2 (A:138-208) 26.6 31 0.0022 22.9 3.8 35 392-426 10-46 (71)
39 d1wj5a_ a.4.5.59 (A:) OB fold- 26.3 18 0.0013 27.0 2.5 26 50-75 80-108 (120)
40 d1v4ra1 a.4.5.6 (A:1-100) Tran 26.0 16 0.0012 26.5 2.3 50 24-73 17-73 (100)
41 d2hs5a1 a.4.5.6 (A:25-93) Puta 25.6 84 0.0061 20.5 6.8 52 20-72 6-64 (69)
No 1
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.3e-42 Score=339.58 Aligned_cols=242 Identities=52% Similarity=0.915 Sum_probs=213.3
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCc
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 79 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~ 79 (449)
+||+..|++.|++|++++++++.+|.++++.++|.+|+.++++++|++.+++.+++|.++|++|.. .+.+|+++...+.
T Consensus 72 ~~i~~~a~~~~~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 151 (315)
T d1li5a2 72 DKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPT 151 (315)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTT
T ss_pred HHHHHHHhhhhhccccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccccc
Confidence 379999999999999999999999999999999999999999999999999999999999999987 4678888887788
Q ss_pred cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130 80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 159 (449)
Q Consensus 80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli 159 (449)
|+..+...+.++..|.++......++|.|+++||.++.+++.+.+.||.++|+|+++|...+...++..+|+|++|.|+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~ 231 (315)
T d1li5a2 152 YGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM 231 (315)
T ss_dssp TTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGT
T ss_pred cCccccccccccccCCcccccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccc
Confidence 88888777666666666555556778899999999989999999999999999999999999899999999999999999
Q ss_pred CchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHH
Q 013130 160 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS 239 (449)
Q Consensus 160 ~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~ 239 (449)
++|+..++++..+..+..++.+|+|+|||+++|+|||||+||||+|+|+++.||+|++|||||+.+++++++||++.|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ldFs~e~l~~ 311 (315)
T d1li5a2 232 FPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ 311 (315)
T ss_dssp TTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHH
T ss_pred cccccccchhhhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHH
Confidence 99999999999998888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 013130 240 ASD 242 (449)
Q Consensus 240 ~~~ 242 (449)
+.+
T Consensus 312 a~~ 314 (315)
T d1li5a2 312 ARA 314 (315)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 2
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.7e-37 Score=308.45 Aligned_cols=238 Identities=18% Similarity=0.187 Sum_probs=171.7
Q ss_pred hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc-cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC---
Q 013130 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--- 77 (449)
Q Consensus 2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~--- 77 (449)
||+.+|.++|++|++++++|+..|.++|+.|||..|..+++.++ |.+.+++++++|.++|++|.+++.+|||+.+-
T Consensus 54 ki~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l 133 (350)
T d1pfva2 54 PIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFL 133 (350)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC
T ss_pred HHHHHHHHcCCCHHHHHHhHHHHHHHHHHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEc
Confidence 89999999999999999999999999999999998666655554 78889999999999999999999999998762
Q ss_pred CccccccCcccc-------------------cccCCCCCcccccccCccchhccccccCCCCcccCCC-CCCCCC-----
Q 013130 78 PNYGRLSGQRLE-------------------NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPG----- 132 (449)
Q Consensus 78 ~~yg~ls~~~l~-------------------~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~W-G~grPg----- 132 (449)
+++..++|..+. +...... +.+...+..++.+|....+..++|..+| |...|+
T Consensus 134 ~d~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 211 (350)
T d1pfva2 134 PDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGA--LQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKY 211 (350)
T ss_dssp CGGGTTTCCCCEEEEEEEEEECGGGGHHHHHHHHTTSC--SCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEE
T ss_pred CCceeccCCCccceecchheeehHHHHHHHHHHhhcCC--CchhhHHHHHHHhhccCCccccccccccCCccccCCCCcc
Confidence 333333332111 0000000 0011111123333333222223444443 333332
Q ss_pred ---chhhhHHHHH----------------hhc---CCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeeee
Q 013130 133 ---WHIECSAMSA----------------HYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN 190 (449)
Q Consensus 133 ---Wh~e~~~~~~----------------~~~---g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~ 190 (449)
|...+..+.. .++ +...++|++|+|++||||.++++|++|....++.++|+ ||||++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~-~g~l~~ 290 (350)
T d1pfva2 212 FYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFV-HGYVTV 290 (350)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEE-ECCEEE
T ss_pred cccccccccchhhhhhccccccccchhhhhccccCCCcceeeccchhhHHHHHhhHHHHhhhcCCCccceEEe-cccEEE
Confidence 3333222111 111 22345899999999999999999999988778887755 599999
Q ss_pred CCccccccCCCccCHHHHHHhcChhHHHHHHhhc--CcCCCcccCHHHHHHHHH
Q 013130 191 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA--HYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 191 ~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~--~~~~d~~fs~~~l~~~~~ 242 (449)
+|+|||||+||+|+|.|++++||+|++||||++. +..+|++||++.|.++.|
T Consensus 291 ~G~KMSKS~GN~i~~~dll~~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N 344 (350)
T d1pfva2 291 NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 344 (350)
T ss_dssp TTBSCCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred CCeEccCcCCCCCCHHHHHHHCCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999983 556889999999998776
No 3
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=100.00 E-value=4.2e-34 Score=284.15 Aligned_cols=233 Identities=15% Similarity=0.048 Sum_probs=174.2
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCcccccc-ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC--
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-- 77 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt-~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~-- 77 (449)
+||+.+|.++|++|+++++.+...+.+++..+++.+++.+...+ .+...++.++..+.++|.+|.+...+++|+.+-
T Consensus 54 ~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (361)
T d1rqga2 54 TPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMF 133 (361)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhhhhccccCceeeeeeeeeccccccee
Confidence 38999999999999999999999999999999999855444433 377889999999999999999999999998652
Q ss_pred -CccccccCcccc------------cc--------cCCCCCc-c-----cccccCccchhccccccCCCCcccCCCCCC-
Q 013130 78 -PNYGRLSGQRLE------------NN--------RAGERVA-V-----DSRKRNPADFALWKAAKAGEPSWDSPWGPG- 129 (449)
Q Consensus 78 -~~yg~ls~~~l~------------~~--------~~g~~~~-~-----~~~k~~~~Df~lwk~~~~~~~~w~s~WG~g- 129 (449)
+.+...++...+ .. ....... . ....++..|+. ++++..||.+
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~---------isr~~~wg~~~ 204 (361)
T d1rqga2 134 LPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERA---------ITRDLNWGIPV 204 (361)
T ss_dssp CCGGGTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEE---------CEECCSSSCBC
T ss_pred cccccccCCCcccccccceEEEecchhhhhhhhcccccccccchhhhhhhcccccccccc---------ccccccccccC
Confidence 111111111100 00 0000000 0 00001111111 2233444443
Q ss_pred -------------------------------CCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhccC---
Q 013130 130 -------------------------------RPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ--- 175 (449)
Q Consensus 130 -------------------------------rPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~--- 175 (449)
+||||++|+.+.....|.+.++|++|.|+.+||+.+++|++.+.+.
T Consensus 205 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~ 284 (361)
T d1rqga2 205 PLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKD 284 (361)
T ss_dssp SCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCS
T ss_pred ccccccCCCeEEEeecccccccccccccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHHHHHHhhcccc
Confidence 4567778888887777889999999999999999999999998752
Q ss_pred ------CCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 176 ------DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 176 ------~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
.++++.++|||||+++|+|||||+||+|+|.|++++||+|+|||||++ .++++|++||++.|.+..|
T Consensus 285 ~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n 358 (361)
T d1rqga2 285 EEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRIN 358 (361)
T ss_dssp SSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHH
T ss_pred ccccccCCCCCEEEEeeeEEeCCEecCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhc
Confidence 123344578899999999999999999999999999999999999998 5899999999999998765
No 4
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=2.6e-33 Score=277.00 Aligned_cols=242 Identities=19% Similarity=0.132 Sum_probs=179.2
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 78 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~ 78 (449)
+||+.+|.++|++|++++..|...|+++++.+||.+ +.|.|+.. +...++.++..+.++|++|++...+++++++..
T Consensus 54 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 132 (348)
T d2d5ba2 54 ETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAY-DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCER 132 (348)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhcCccc-cceeecccchhhHHHHHHHHHHHhhCccccccccccccccccc
Confidence 379999999999999999999999999999999997 56666553 667899999999999999999999999987643
Q ss_pred ccccccCcccccccCCCCCcc----------ccc--------ccCccch-------------hccc-cccCCCCcccCCC
Q 013130 79 NYGRLSGQRLENNRAGERVAV----------DSR--------KRNPADF-------------ALWK-AAKAGEPSWDSPW 126 (449)
Q Consensus 79 ~yg~ls~~~l~~~~~g~~~~~----------~~~--------k~~~~Df-------------~lwk-~~~~~~~~w~s~W 126 (449)
.|.............|...+. +.. ...+.+. ..|. ...+..+.|..+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~ 212 (348)
T d2d5ba2 133 FYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPW 212 (348)
T ss_dssp ECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCS
T ss_pred eeccccccccccccCCCceEEecccccccchHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCC
Confidence 332211111111111111110 000 0000000 0000 0011235678899
Q ss_pred CCCCCCc--------hhhhHHHHHhh---------cCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee
Q 013130 127 GPGRPGW--------HIECSAMSAHY---------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT 189 (449)
Q Consensus 127 G~grPgW--------h~e~~~~~~~~---------~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~ 189 (449)
|.++|+| +.++....... ...+.++|++|.|+.++|+..+.+++.+....|++++|+|+++++
T Consensus 213 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~ 292 (348)
T d2d5ba2 213 GIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLG 292 (348)
T ss_dssp SCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEEC
T ss_pred CcccccCCcccccchhccchhhhhhhcCCchhhhccccchheeeehhhccchhhhhhhhhccccccCCCCEEEeCceEEc
Confidence 9999975 44443332211 123678999999999999999999998887788999999988888
Q ss_pred eCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHHH
Q 013130 190 NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA 243 (449)
Q Consensus 190 ~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~ 243 (449)
.+|+|||||+||+|+|.|++++||+|++||||++ .|+++|++||++.|++..|+
T Consensus 293 ~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p~~~d~dFs~~~~~~~~n~ 347 (348)
T d2d5ba2 293 PDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEA 347 (348)
T ss_dssp TTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHH
T ss_pred ccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999998 59999999999999987763
No 5
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=9e-32 Score=273.75 Aligned_cols=230 Identities=19% Similarity=0.204 Sum_probs=155.2
Q ss_pred hhHHHHHH----cCCChHHH------------HHHHHHHHHHHHhhCCCCCCCc--ccccc--ccHHHHHHHHHHHHHcC
Q 013130 2 QIIRRAND----LGENPLSL------------SNRYCQEYLVDMADLQCLPPTY--QPRVS--DHMEQIKDMITQIINND 61 (449)
Q Consensus 2 KI~~~A~~----~g~~~~e~------------~~~~~~~f~~~~~~L~I~~~d~--~~rtt--~h~~~v~~~i~~L~~~G 61 (449)
+|..+|++ +|..+.++ +..|.+.+.+.+++||+.. |. +.+|+ +|++.+++++.+|.++|
T Consensus 86 ~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-d~~~~~~t~~~~~~~~~~~~~~~l~~~G 164 (425)
T d1ivsa4 86 ATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASA-DWSREAFTMDEKRSRAVRYAFSRYYHEG 164 (425)
T ss_dssp HHHHHHHHHHHTTTCCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CGGGCEETTSHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHhhcccCCChHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-CcchhhcccchhhhhhhHHHHhhhhccC
Confidence 45555555 56666554 5778899999999999987 43 33555 39999999999999999
Q ss_pred CeEeecCcEEEeCCCCCccccc-------cCc------------ccccc--------cCC-CCCcccc-------cccCc
Q 013130 62 CAYVVEGDVFFAVEKSPNYGRL-------SGQ------------RLENN--------RAG-ERVAVDS-------RKRNP 106 (449)
Q Consensus 62 ~aY~~~g~~yf~~~~~~~yg~l-------s~~------------~l~~~--------~~g-~~~~~~~-------~k~~~ 106 (449)
++|.+++.++||+.+...++.. .+. .+.+. ..+ ..+..+. .....
T Consensus 165 ~iy~~~~~~~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l 244 (425)
T d1ivsa4 165 LAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 244 (425)
T ss_dssp SEEEECCEEEEETTTTEECCGGGEEEETTTCSBCEEEECCEEEECHHHHHHHHHHHHHHTCCEESSSTHHHHHHHHHHTC
T ss_pred cccccceeecccccccccccccccccccccCcccccccccchhhccchhhccchhhhhcCCcceeccccceeeehhhhhc
Confidence 9999999999998764211110 000 00000 000 0000000 01111
Q ss_pred cchhccccccCCCCcccCCCCCCCCC-----------------------------------------chhhhHHHHH---
Q 013130 107 ADFALWKAAKAGEPSWDSPWGPGRPG-----------------------------------------WHIECSAMSA--- 142 (449)
Q Consensus 107 ~Df~lwk~~~~~~~~w~s~WG~grPg-----------------------------------------Wh~e~~~~~~--- 142 (449)
.|+.+ ++...||.++|. |...+...+.
T Consensus 245 ~d~~i---------sr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~ 315 (425)
T d1ivsa4 245 KDWNI---------SRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLG 315 (425)
T ss_dssp CCEEC---------EECCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTT
T ss_pred Cccee---------ecccccCCccceeeccCcceeecCccccccccccccccccCccccccCccccccccchhHHHHhhC
Confidence 23222 222233333322 1111100000
Q ss_pred -----hh--cCCCccEEeecccCcCchhHHHHHHHhhccCC-CCCcEEEeeee-eeeCCccccccCCCccCHHHHHHhcC
Q 013130 143 -----HY--LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGH-VTNNNEKMSKSLGNFFTIRQITERYH 213 (449)
Q Consensus 143 -----~~--~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~-~~~~~~~h~g~-l~~~G~KMSKSlGN~i~~~dll~~yg 213 (449)
.. .+.|.|||++|+||++||+.+|+|+++++.+. ||.++++| || |+.+|+|||||+||+|+|.++|++||
T Consensus 316 ~~~~~~~~~~~~p~di~~~G~Di~~~h~~~~~a~~~~~~~~~p~~~v~~h-g~~L~~~G~KMSKS~Gn~I~~~e~l~~~g 394 (425)
T d1ivsa4 316 WPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYG 394 (425)
T ss_dssp TTTTCSHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEE-CCEECTTSSBCBTTTTBCCCHHHHHHHHC
T ss_pred CCcChHHHhCCCCceEEEEEehhhhHHHHHHHHHHHHhcCCCccceEEEc-ceEECCCCCCcCCCCCCCcCHHHHHHHcC
Confidence 00 12478999999999999999999999999875 77888666 77 56799999999999999999999999
Q ss_pred hhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 214 PLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 214 ~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
+|++||||++ ++.++|++||++.+..+.|
T Consensus 395 ~D~lR~~L~~~~~~~~d~dF~~~~~~~~~n 424 (425)
T d1ivsa4 395 ADALRFALIYLATGGQDIRLDLRWLEMARN 424 (425)
T ss_dssp HHHHHHHHHHHCCTTCCEECCHHHHHHHHH
T ss_pred chHHHHHHHhcCCCCCCCccCHHHhhhccC
Confidence 9999999998 5889999999999987654
No 6
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=99.97 E-value=1.6e-30 Score=266.83 Aligned_cols=231 Identities=18% Similarity=0.174 Sum_probs=161.6
Q ss_pred ChhHHHHHHcCCChHHH------------HHHHHHHHHHHHhhCCCCCCCccc--ccc--ccHHHHHHHHHHHHHcCCeE
Q 013130 1 MQIIRRANDLGENPLSL------------SNRYCQEYLVDMADLQCLPPTYQP--RVS--DHMEQIKDMITQIINNDCAY 64 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~------------~~~~~~~f~~~~~~L~I~~~d~~~--rtt--~h~~~v~~~i~~L~~~G~aY 64 (449)
++|+++|.+.|.+++++ +.++.+.+++.+++||+.. |... +|+ +|...++.+|.+|.++|+||
T Consensus 99 ~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy 177 (450)
T d1ffya3 99 LPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRG-DFNDPYITLKPEYEAAQIRIFGEMADKGLIY 177 (450)
T ss_dssp HHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCS-CTTSCEETTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred cHHHHHHHhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhc-ccccccccccHHHHHHHHHHHHHHHHcCCee
Confidence 36888899999887666 7899999999999999997 5432 455 38899999999999999999
Q ss_pred eecCcEEEeCCCCCccccccCcccccccCCCCCc----------------------------ccc-------cccCccch
Q 013130 65 VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVA----------------------------VDS-------RKRNPADF 109 (449)
Q Consensus 65 ~~~g~~yf~~~~~~~yg~ls~~~l~~~~~g~~~~----------------------------~~~-------~k~~~~Df 109 (449)
++...|+||+.+-..+....-.......++..++ ... ..++..|+
T Consensus 178 ~~~~~v~~~p~~~~~~~~~e~~~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dw 257 (450)
T d1ffya3 178 KGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEW 257 (450)
T ss_dssp EEEEEEEEETTTTEECCGGGEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCE
T ss_pred ccccccccccccCcccccccccccccccccCCceeeccccceeccccccccchhhcccccccccccceeeeccccCccch
Confidence 9999999998763211100000000000111110 000 00111233
Q ss_pred hccccccCCCCcccCCCCCCCCCchhhh----------------------------------------------------
Q 013130 110 ALWKAAKAGEPSWDSPWGPGRPGWHIEC---------------------------------------------------- 137 (449)
Q Consensus 110 ~lwk~~~~~~~~w~s~WG~grPgWh~e~---------------------------------------------------- 137 (449)
++. ....||.+.|-|+.++
T Consensus 258 ~iS---------Rqr~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (450)
T d1ffya3 258 VIS---------RQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKET 328 (450)
T ss_dssp ECE---------ESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECC
T ss_pred hee---------eecccccCcceeecCCCCEecchhhhHHHHHhhhhcCccccccccccccccccccccCCCCCcceeee
Confidence 332 2233444444332110
Q ss_pred --------HH-HHHhh------cCCCccEEeecccCcCchhHHHHHHHhhccC-CCCCcEEEeeeeee-eCCccccccCC
Q 013130 138 --------SA-MSAHY------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVT-NNNEKMSKSLG 200 (449)
Q Consensus 138 --------~~-~~~~~------~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~-~~G~KMSKSlG 200 (449)
+. ..... ...|.|+|++|+|+++||+...++++.++.+ .||.++++| |||+ .+|+|||||+|
T Consensus 329 dvld~wfds~~~~~~~~~~~~~~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~G 407 (450)
T d1ffya3 329 DIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLG 407 (450)
T ss_dssp CEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSS
T ss_pred eeecccccccccccccccccccccCCCcccccCcchhhHHHHHHHHHHHHhcCCCCcceEEEc-ceEECCCCCCCCCCCC
Confidence 00 00001 1347899999999999999988888888877 578888655 9975 68999999999
Q ss_pred CccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHHHHH
Q 013130 201 NFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 201 N~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~~~~ 242 (449)
|+|+|.+++++||+|++||||+++++++|++||++.|.++.+
T Consensus 408 N~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~~~~~ 449 (450)
T d1ffya3 408 NVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449 (450)
T ss_dssp CCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcHHHHHHHHcCCCCCCcCcCHHHHHHhhc
Confidence 999999999999999999999988999999999999998754
No 7
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.96 E-value=2.3e-29 Score=257.64 Aligned_cols=229 Identities=15% Similarity=0.086 Sum_probs=154.1
Q ss_pred ChhHHHHHHcCCC-----------------hHHHHHHHHHHHHHHHhhCCCCCCCc-cccccc--cHHHHHHHHHHHHHc
Q 013130 1 MQIIRRANDLGEN-----------------PLSLSNRYCQEYLVDMADLQCLPPTY-QPRVSD--HMEQIKDMITQIINN 60 (449)
Q Consensus 1 ~KI~~~A~~~g~~-----------------~~e~~~~~~~~f~~~~~~L~I~~~d~-~~rtt~--h~~~v~~~i~~L~~~ 60 (449)
++|+.+|.+++.. +++++.+|...+.+++..||+..+.. +.+|++ |++.+++++.+|.++
T Consensus 89 ~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~ 168 (452)
T d1ilea3 89 LPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDR 168 (452)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhc
Confidence 4788899888764 47888889999999999999987322 334544 999999999999999
Q ss_pred CCeEeecCcEEEeCCCCCcc-----------ccccCcccccccCCC----------------------CC-----ccccc
Q 013130 61 DCAYVVEGDVFFAVEKSPNY-----------GRLSGQRLENNRAGE----------------------RV-----AVDSR 102 (449)
Q Consensus 61 G~aY~~~g~~yf~~~~~~~y-----------g~ls~~~l~~~~~g~----------------------~~-----~~~~~ 102 (449)
|++|.+...++||+.+...+ ...++..++....++ +. .....
T Consensus 169 G~iy~~~~~~~~~~~~~~~~~~~~~~~~~p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 248 (452)
T d1ilea3 169 GLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEW 248 (452)
T ss_dssp TCEEEECCEEEEETTTTEECCHHHHHHTEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHH
T ss_pred CCcccccccchhhcccccccccccccccCCCccCcCCceEEeeccchhhhhccchhhhhhhhcccccCcchhhhceeeee
Confidence 99999999999998764211 111221111000000 00 00001
Q ss_pred ccCccchhccccccCCCCcccCCCCCCCCC--------------------------------------------------
Q 013130 103 KRNPADFALWKAAKAGEPSWDSPWGPGRPG-------------------------------------------------- 132 (449)
Q Consensus 103 k~~~~Df~lwk~~~~~~~~w~s~WG~grPg-------------------------------------------------- 132 (449)
.++..|+.+ +.+..||.+.|-
T Consensus 249 ~~~l~dw~I---------sR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T d1ilea3 249 LKNLVDWAL---------SRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTM 319 (452)
T ss_dssp HHTCCCEEC---------CBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEE
T ss_pred ccCCcccee---------ecccccccCCccccccccCcccccchhhhhhhhhccccCccccccccccccccccccccccc
Confidence 111122221 112223333321
Q ss_pred ---------chhhh-------------HHHHHhhcCCCccEEeecccCcC--chhHHHHHHHhhccCCCCCcEEEeeeee
Q 013130 133 ---------WHIEC-------------SAMSAHYLSSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHV 188 (449)
Q Consensus 133 ---------Wh~e~-------------~~~~~~~~g~~~Dih~~GkDli~--~H~~~~~a~~~a~~~~~~~~~~~h~g~l 188 (449)
|+... ....... .|.++|++|+|+++ ||+.+||+++++ +..||+++++| ||+
T Consensus 320 ~~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~g~d~~~~~fh~l~~~~~l~~-~~~~~~~v~~h-g~i 395 (452)
T d1ilea3 320 RRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRES--FPADFIAEGIDQTRGWFNSLHQLGVMLF-GSIAFKNVICH-GLI 395 (452)
T ss_dssp EECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHH--SSBSBEEEEGGGGGTHHHHHHHHHHHHH-SSCSBSEEEEE-CCE
T ss_pred cccccccccccccccchhhhccCccchhhhcccC--CcchhheecCceechhhHHHHHhHHHHc-CCCCCCeEEEe-eEE
Confidence 11110 0111111 36677777777665 899999999874 45688998665 775
Q ss_pred -eeCCccccccCCCccCHHHHHHhcChhHHHHHHhh-cCcCCCcccCHHHHHHHHH
Q 013130 189 -TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD 242 (449)
Q Consensus 189 -~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 242 (449)
+.+|+|||||+||+|+|.++|++||+|++||||++ +++++|++||++.|.++++
T Consensus 396 L~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~~d~~Fs~~~~~e~~~ 451 (452)
T d1ilea3 396 LDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR 451 (452)
T ss_dssp ECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred ECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHhcCCCCCCCCcCHHHHhHHhc
Confidence 58999999999999999999999999999999998 5999999999999998764
No 8
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.84 E-value=7.4e-21 Score=195.93 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=68.2
Q ss_pred ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCc--cccccc--cHHHHHHHHHHHHHcCCeEeecCcEEEeCCC
Q 013130 1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTY--QPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK 76 (449)
Q Consensus 1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~--~~rtt~--h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~ 76 (449)
++|+.+|++.|..|.++++++...+++.|++||+.. |. +.+|++ |...++++|.+|+++|+||.+..-++||+.+
T Consensus 84 ~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~ 162 (494)
T d1h3na3 84 LPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY-DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKC 162 (494)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC-CGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHhHHHHHhcCccc-CCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCc
Confidence 478999999999999999999999999999999997 64 556664 8899999999999999999999999999876
No 9
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.72 E-value=1.1e-18 Score=167.04 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred ccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCcCchhHHHHHHHhhcc--CCCCCcEEEeeeeeeeCCc--cccc
Q 013130 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSYWMHNGHVTNNNE--KMSK 197 (449)
Q Consensus 122 w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~--~~~~~~~~~h~g~l~~~G~--KMSK 197 (449)
+..+||.+.+.|...|... +.+.++++|+.|+|++.+|+.+++++.+++. +.+++.+ +|||||+++|+ ||||
T Consensus 205 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~l~ge~~KMSk 280 (317)
T d1irxa2 205 VDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLS-LMYEFVGIKGQKGKMSG 280 (317)
T ss_dssp ECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBC-CEECCEEESCC------
T ss_pred ccccccCCcccccccchhh---hccCceeEEEecceecccchhhhHhhhhhhhhcCCCCcEE-EEEEEEEECCccccccC
Confidence 3456777777888776544 2344789999999999999999998876553 3444444 68899999765 9999
Q ss_pred cCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccC
Q 013130 198 SLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 233 (449)
Q Consensus 198 SlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs 233 (449)
|+||+|+|.|+++.|++|++|||+|+..+.++++|+
T Consensus 281 rkGn~I~~~dll~~~~~d~~Ry~~l~~~~~~~i~FD 316 (317)
T d1irxa2 281 SKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKID 316 (317)
T ss_dssp ---CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEEC
T ss_pred CCCccccHHHHHHHCCHHHHHHHhcCCCCCCCcCCC
Confidence 999999999999999999999999998889999997
No 10
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.45 E-value=3.8e-13 Score=131.84 Aligned_cols=181 Identities=12% Similarity=-0.025 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCcccccc-ccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCCCccccccCccccccc
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR 92 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt-~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~~~yg~ls~~~l~~~~ 92 (449)
++.+++.....|.++++.|||.+ |.|..-+ -+.+.....+..|.++|++|+.+|.+||+.+.| |.
T Consensus 131 ~~~~~~~~l~~~~~~~~~l~i~f-D~~~~Es~~~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~---g~---------- 196 (348)
T d1f7ua2 131 WKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK---------- 196 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hhhhhcccccccchHHHHHHHHhhccccccCCcccccchhh---cc----------
Confidence 45677888899999999999999 6554444 466667788999999999999999999987654 21
Q ss_pred CCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhc--CCCccEEeecccCcCchhHHHHHHH
Q 013130 93 AGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL--SSKFDIHGGGIDLIFPHHENEIAQS 170 (449)
Q Consensus 93 ~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~--g~~~Dih~~GkDli~~H~~~~~a~~ 170 (449)
..|.++++++ +|.+++.+ ..|+++..++- +...-|.+.|.| |+.+.+-+.
T Consensus 197 -------------~~~~~vl~ks-DG~~tY~t----------~DiAy~~~K~~~~~~D~~I~V~g~d----q~~~~~~l~ 248 (348)
T d1f7ua2 197 -------------KLGKAIVQKS-DGTTLYLT----------RDVGAAMDRYEKYHFDKMIYVIASQ----QDLHAAQFF 248 (348)
T ss_dssp -------------TTCEEEEECT-TSCCCHHH----------HHHHHHHHHHHHHCCSEEEEECCGG----GHHHHHHHH
T ss_pred -------------ccccceeccC-CCccceec----------chHHhhhhhhhccCCCEEEEecccc----cchhhhhHH
Confidence 0133345432 44443311 14555555553 444457888888 888776544
Q ss_pred hhcc--CCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh----------------------------cChhHHHHH
Q 013130 171 CAAC--QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER----------------------------YHPLALRHF 220 (449)
Q Consensus 171 ~a~~--~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~----------------------------yg~D~lR~~ 220 (449)
.++. +..+.+.|.|.++-++ .||||+.||+|++.||+++ .|.+++||+
T Consensus 249 ~~l~~lg~~~~~~~~h~~~g~v--~kMStR~G~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~ 326 (348)
T d1f7ua2 249 EILKQMGFEWAKDLQHVNFGMV--QGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQ 326 (348)
T ss_dssp HHHHHTTCGGGGGEEEECCCCE--ESCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccceeeecCCcc--ccccccCCCceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHHhhHHheehh
Confidence 3332 3344555677777666 3899999999999999975 778899999
Q ss_pred HhhcCcCCCcccCHHHHH
Q 013130 221 LISAHYRSPLNYSVLQLD 238 (449)
Q Consensus 221 ll~~~~~~d~~fs~~~l~ 238 (449)
+|+.+..+++.|+++.+.
T Consensus 327 ~L~~~~~~~~~Fd~d~~l 344 (348)
T d1f7ua2 327 DMQGKRINNYEFKWERML 344 (348)
T ss_dssp HHSSCTTCCEECCHHHHH
T ss_pred hhhcCCCCCCEECHHHhc
Confidence 999999999999999865
No 11
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.33 E-value=7.2e-13 Score=130.88 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=137.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccc-c-HHHHHHHHHHHHHcCCeEeec-----CcEEEeCCCCCc
Q 013130 7 ANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-H-MEQIKDMITQIINNDCAYVVE-----GDVFFAVEKSPN 79 (449)
Q Consensus 7 A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-h-~~~v~~~i~~L~~~G~aY~~~-----g~~yf~~~~~~~ 79 (449)
+.+.|. ..+..+++....++++..|||.+ |.+..-++ + ...+.+.+..|.++|.+|+.+ |.++++.+.+..
T Consensus 110 ~le~~~-~~~~~~~~l~~~~~~l~~l~v~f-D~~~~Es~l~~~~~~~~~i~~l~~~~~~~~~~~~~~~ga~~~d~~~~~~ 187 (370)
T d1iq0a2 110 ALERGE-LREEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIP 187 (370)
T ss_dssp HHHTTT-THHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSC
T ss_pred HHHhhh-HHHHHHHHHHHHHhhhhccceee-ceeeeecccccccchhhhHhhhhhccceeeccccccceEEEecCccccc
Confidence 344454 44556777788889999999999 66665554 2 235778899999999999875 678888776522
Q ss_pred cccccCcccccccCCCCCcccccccCccchh--ccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeeccc
Q 013130 80 YGRLSGQRLENNRAGERVAVDSRKRNPADFA--LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 157 (449)
Q Consensus 80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~--lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkD 157 (449)
-+....+-+- -..|... .. .+|.+ +||......+.|..+++...+++.+.++. .+.....+|-.+...|
T Consensus 188 ~~~~~~~vl~-ksDG~~t---Y~---t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~~d--~~~~~~~~d~~iyVvd 258 (370)
T d1iq0a2 188 GLEDPFFVLL-RSNGTAT---YY---AKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPE--GEAYTPKAEETINVVD 258 (370)
T ss_dssp SCSCCEEEEE-CTTSCBC---HH---HHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEE--EEECCCCCSEEEEEEE
T ss_pred cccCcceeeE-eccCCce---Ee---ccHHHHHhhhcccccccceeccccCccceeEeeccc--cccchhhhhHHHHHHh
Confidence 1111000000 0011110 00 12544 35543333345555665555654433321 1222224565544556
Q ss_pred CcCchhHHHHHHHhhccCCCCC---cEEEeeeeeeeCCccccccCCCccCHHHHHHh-----------------------
Q 013130 158 LIFPHHENEIAQSCAACQDSNV---SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER----------------------- 211 (449)
Q Consensus 158 li~~H~~~~~a~~~a~~~~~~~---~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~----------------------- 211 (449)
.-..||.....+...+-+.+.. -..+..|+|+.+|+||||+.||+|++.|||+.
T Consensus 259 ~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~~~~~~~~~~a 338 (370)
T d1iq0a2 259 VRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAA 338 (370)
T ss_dssp SSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHH
T ss_pred ccchHHHHHHHHHHHHhCCCchhhceeeEEEEEEecCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 6666888877776665553211 12244588888999999999999999999986
Q ss_pred --cChhHHHHHHhhcCcCCCcccCHHHHH
Q 013130 212 --YHPLALRHFLISAHYRSPLNYSVLQLD 238 (449)
Q Consensus 212 --yg~D~lR~~ll~~~~~~d~~fs~~~l~ 238 (449)
.|.+++||++|+.+..+++.|+++.+.
T Consensus 339 ~~vgi~avky~~L~~~~~~~~~Fd~d~~l 367 (370)
T d1iq0a2 339 RMVALGAIRFSMVKTEPKKQIDFRYQEAL 367 (370)
T ss_dssp HHHHHHHHHHHHHHSCTTSCEEECHHHHH
T ss_pred HHhhhhheehhHhhcCCCCCceECHHHhc
Confidence 899999999999999999999999864
No 12
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.23 E-value=2.9e-11 Score=115.94 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCc---------cccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCCC-------
Q 013130 14 PLSLSNRYCQEYLVDMADLQCLPPTY---------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------- 77 (449)
Q Consensus 14 ~~e~~~~~~~~f~~~~~~L~I~~~d~---------~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~~------- 77 (449)
++-....|.+.+.++++.|||.+ |. ..+.|+|++.+++++.+|+++|+||. ++|+...
T Consensus 45 ~~R~~~~~~~~I~~dL~wLgi~w-D~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~-----C~cs~~~l~~~~~~ 118 (305)
T d1j09a2 45 RARYVPGAEERILAALKWLGLSY-DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR-----AFETPEELEQIRKE 118 (305)
T ss_dssp TTSCCTTHHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE-----ECCCHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHhcCc-ccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeee-----ccccchhhhhhhhh
Confidence 33344578899999999999997 53 45889999999999999999999995 3433221
Q ss_pred -Cccc----cccCccccc-ccCCCCCcccccccCccchhccccccCCCC-----cccCCCC---CCCCCchhhhHHHHHh
Q 013130 78 -PNYG----RLSGQRLEN-NRAGERVAVDSRKRNPADFALWKAAKAGEP-----SWDSPWG---PGRPGWHIECSAMSAH 143 (449)
Q Consensus 78 -~~yg----~ls~~~l~~-~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~-----~w~s~WG---~grPgWh~e~~~~~~~ 143 (449)
+.|. .++....++ ...|....+. .|....+...|...-.+.+ ....+|+ .|.|.||++|+..= .
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~R-~k~~~~~~~~~~d~i~~~~~~~~~~~~D~vi~r~dg~p~Y~~A~vvDD-~ 196 (305)
T d1j09a2 119 KGGYDGRARNIPPEEAEERARRGEPHVIR-LKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDD-H 196 (305)
T ss_dssp HSSCCCGGGGSCHHHHHHHHHTTCCCEEE-ECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHH-H
T ss_pred ccCCCCccccchhhhHHHHhhcCCcceEE-EeccccCCccccchhhceeeeccccCCCeEEECCCCCeehHHHHHHHH-H
Confidence 0111 011000000 0111100000 0000000000110000000 0111222 47899999886542 2
Q ss_pred hcCCCccEEeecccCcC--chhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHh-cChhHHHHH
Q 013130 144 YLSSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHF 220 (449)
Q Consensus 144 ~~g~~~Dih~~GkDli~--~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ 220 (449)
.. .++..+-|.|++. |++. .+..+++. +.+.+|.|..++..+|+|||||.|. .++.++.+. |.|+++|-|
T Consensus 197 ~~--githviRG~Dl~~~t~~q~---~l~~~Lg~-~~p~~~h~~l~~~~~g~KLSKr~~~-~tl~~lr~~G~~peai~~~ 269 (305)
T d1j09a2 197 LM--GVTDVIRAEEWLVSTPIHV---LLYRAFGW-EAPRFYHMPLLRNPDKTKISKRKSH-TSLDWYKAEGFLPEALRNY 269 (305)
T ss_dssp HT--TCCEEEEEGGGGGGHHHHH---HHHHHHTC-CCCEEEEECCCBCTTSCBCCTTTSC-CBHHHHHHTTCCHHHHHHH
T ss_pred Hc--cCccccccccceeccHHHH---HHHHhhcC-CCCceeeecccccCccccccccCCc-cCHHHHHHcCCCHHHHHHH
Confidence 23 4677777899554 2222 23344443 5566754433445699999999986 688888864 999999998
Q ss_pred Hhh-c-CcC-CCcccCHHHHH
Q 013130 221 LIS-A-HYR-SPLNYSVLQLD 238 (449)
Q Consensus 221 ll~-~-~~~-~d~~fs~~~l~ 238 (449)
++. + +.. ..-.+|.+.+.
T Consensus 270 l~~lG~~~~~~~~~~sl~e~i 290 (305)
T d1j09a2 270 LCLMGFSMPDGREIFTLEEFI 290 (305)
T ss_dssp HHHHSCCCTTCCSCCCHHHHH
T ss_pred HHHhCCCCCCCcCcCCHHHHH
Confidence 876 3 332 23346766554
No 13
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=99.16 E-value=3.8e-11 Score=108.89 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHH-HHhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013130 242 DAVFYIYQTLQDC-EVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 319 (449)
Q Consensus 242 ~~l~~l~~~~~~~-~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~p 319 (449)
|+||||++|+..+ ..++++..+. ....+.|.+++..+..+.+++.++| ++|++++|++. +|++++.+|+|++..+|
T Consensus 2 N~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~l~~~~N~yi~~~~P 79 (210)
T d1rqga1 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQP 79 (210)
T ss_dssp TTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 5799999997554 5566554332 2223456889999999999999999 99999999999 99999999999999999
Q ss_pred cCchhhhh-hhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 320 KQPKQQQL-SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 320 w~~~~~~~-~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
|.+.+++. .+..+++.+++.++.++.+|. |+|. .+.+++.+++
T Consensus 80 W~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~-~a~~i~~~Lg 124 (210)
T d1rqga1 80 WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLN 124 (210)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTT
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHcC
Confidence 98666443 456778888888888888886 7887 6777777764
No 14
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.11 E-value=3.8e-11 Score=103.27 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHH-HHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013130 242 DAVFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKK 320 (449)
Q Consensus 242 ~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw 320 (449)
|++|||++|+..+ ..++++..+. ..+.+....+..+.+++.++| ++|++++|++. ++++++.+|+|++..+||
T Consensus 3 N~lGNlv~R~~~~~~k~~~g~vP~----~~~~~~~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~~~~N~yi~~~~PW 76 (152)
T d2d5ba1 3 DDLGNLVQRTRAMLFRFAEGRIPE----PVAGEELAEGTGLAGRLRPLV-RELKFHVALEE-AMAYVKALNRYINEKKPW 76 (152)
T ss_dssp CCCHHHHHHHHHHHHHHSTTBCCC----CCCCGGGGGGGGHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCC----CcchHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4689999997654 4555543332 222233445667888999999 99999999999 999999999999999999
Q ss_pred Cchhhhh-hhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 321 QPKQQQL-SLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 321 ~~~~~~~-~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
++.+++. ....+|+.+++.++.+..+|. |+|. .++++++++
T Consensus 77 ~l~k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~-~~~ki~~~L 119 (152)
T d2d5ba1 77 ELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD-KMAELRRAL 119 (152)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHT
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHHHHHHHc
Confidence 8655543 345678888888888777776 6776 566666655
No 15
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=99.06 E-value=4.1e-10 Score=97.67 Aligned_cols=111 Identities=8% Similarity=-0.009 Sum_probs=85.6
Q ss_pred HHHHHHH-HHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 013130 246 YIYQTLQ-DCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 324 (449)
Q Consensus 246 ~l~~~~~-~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~ 324 (449)
||.+|+. ++.+++++..+. ...|.++.+.+..+.+.+.++| ++|++++|+.. +|++++.+|+|++..+||++.+
T Consensus 3 NL~~R~~~~i~k~~~g~vp~---~~~d~~l~~~~~~~~~~~~~~~-~~~~~~~al~~-i~~~~~~~Nkyi~~~~PWkl~k 77 (162)
T d1pfva1 3 NLASRNAGFINKRFDGVLAS---ELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAK 77 (162)
T ss_dssp HHHHHHHHHHHHHSTTBCCS---SCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTT
T ss_pred chHHHHHHHHHHhcCCcCCC---CCCCHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHHHHHHHhhhhhcc
Confidence 6777754 445566554332 3457889999999999999999 99999999999 9999999999999999998655
Q ss_pred hh---hhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 325 QQ---LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 325 ~~---~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
++ +.+...|+.+++.++.++.+|. |+|. .+.+++.++
T Consensus 78 ~~~~~~~~~~vl~~~~~~lr~~~~lL~P~mP~-~s~ki~~~L 118 (162)
T d1pfva1 78 QEGRDADLQAICSMGINLFRVLMTYLKPVLPK-LTERAEAFL 118 (162)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHTTTTCHH-HHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHh
Confidence 43 2245678888888888888776 6776 556555554
No 16
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}
Probab=98.52 E-value=1.6e-07 Score=88.44 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC----CCccccccCccc
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRLSGQRL 88 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~----~~~yg~ls~~~l 88 (449)
+++-....|.+.+.++|+.||+.++.-..+.|++.+...+++++|+++|.||. +||+.+ +.....-.+..+
T Consensus 45 D~~R~~~~~~~~I~~dL~wlgl~~d~~~~~QS~r~~~Y~~~~~~L~~~g~aY~-----C~ct~~~l~~~~~~~~~~~~~~ 119 (286)
T d1nzja_ 45 DPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYY-----CTCTRARIQSIGGIYDGHCRVL 119 (286)
T ss_dssp CGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEE-----ECCCHHHHHHTTSSCCCTTTTT
T ss_pred CCCcCCHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHcCCccc-----ccccHHHHHhhccccccccccc
Confidence 34444456899999999999999855577889999999999999999999994 455422 100000000000
Q ss_pred cc------c---cCCCCCcc----c-----ccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCcc
Q 013130 89 EN------N---RAGERVAV----D-----SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 150 (449)
Q Consensus 89 ~~------~---~~g~~~~~----~-----~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~D 150 (449)
.. . ........ . .......||++++. .|.|.+|..|+.- .... .++
T Consensus 120 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~R~-------------dg~ptY~lA~vVD-D~~~--gIT 183 (286)
T d1nzja_ 120 HHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRR-------------DGLFAYNLAVVVD-DHFQ--GVT 183 (286)
T ss_dssp CCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECT-------------TSCBCHHHHHHHH-HHHT--TCC
T ss_pred cchhhhhhhhhcccccccceeeeeeeeeeeccccccccccccCC-------------CCCeeeeehhhhc-cccc--ccc
Confidence 00 0 00000000 0 00111235655542 3567788776322 2223 356
Q ss_pred EEeecccCcCchhHHHHHHHh---hccCCCCCcEEEeeeeee-eCCccccccCC
Q 013130 151 IHGGGIDLIFPHHENEIAQSC---AACQDSNVSYWMHNGHVT-NNNEKMSKSLG 200 (449)
Q Consensus 151 ih~~GkDli~~H~~~~~a~~~---a~~~~~~~~~~~h~g~l~-~~G~KMSKSlG 200 (449)
..+=|.| |..+.+.|.. +++ .+.+.+ .|++.++ .+|+||||+.|
T Consensus 184 hViRG~D----~l~st~~Q~~L~~~lg-~~~P~y-~H~pli~~~~g~KLSKr~~ 231 (286)
T d1nzja_ 184 EIVRGAD----LIEPTVRQISLYQLFG-WKVPDY-IHLPLALNPQGAKLSKQNH 231 (286)
T ss_dssp EEEEEGG----GHHHHHHHHHHHHHHT-CCCCEE-EEECBCCC-----------
T ss_pred eeccccc----ccchHHHHHHHHHhhC-CCccce-eecceEEccCCcccccccC
Confidence 6666899 7777776663 443 344555 7999776 58999999976
No 17
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=98.22 E-value=1.9e-06 Score=65.85 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 013130 280 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 352 (449)
Q Consensus 280 ~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~ 352 (449)
.+.++|.++|+||||||.|++. |+++++.+|+++.... .....+...++.+..+|||+..
T Consensus 22 ~~~~~F~~Am~DDlNTp~Ala~-lfel~k~~N~~~~~~~------------~~~~~~~~~l~~~~~vLGll~~ 81 (87)
T d1li5a1 22 AFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAEDM------------AAANAMASHLRKLSAVLGLLEQ 81 (87)
T ss_dssp HHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHTTTTCSCS
T ss_pred HHHHHHHHHHHhhcCcHHHHHH-HHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHHhHcCCCCC
Confidence 4678899999999999999999 9999999999876532 1122334567788999999765
No 18
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=97.87 E-value=6.5e-06 Score=76.51 Aligned_cols=116 Identities=11% Similarity=0.087 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhcCCcccC------CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHHHh
Q 013130 244 VFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLN 315 (449)
Q Consensus 244 l~~l~~~~~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~--~~N~yi~ 315 (449)
+.+|+|+++++.+++.++.+. .....+|+|++..++.+..++.++| ++|++++|++. |++|+. ..+.|++
T Consensus 1 YRKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y-~~y~f~~~~~~-l~~F~~~~ls~~Y~~ 78 (273)
T d1ffya1 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLD 78 (273)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHH
T ss_pred CchHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHH-HhccccchHHH-HHhhhhccchHHHHh
Confidence 357899999988888776531 1123468999999999999999999 99999999999 999986 6788999
Q ss_pred hhcc--cCchhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 316 MLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 316 ~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
..++ |....++..+.....++...+..++++|. |+|- ..+++++.+
T Consensus 79 ~~Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf-~~Eei~~~~ 127 (273)
T d1ffya1 79 YGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-TAEEVWSHT 127 (273)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHTTS
T ss_pred hccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 8886 43333333344444455677777888887 5554 555555433
No 19
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=97.84 E-value=0.00021 Score=67.91 Aligned_cols=213 Identities=16% Similarity=0.099 Sum_probs=114.4
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeecCcEEEeCCC-------C-------
Q 013130 12 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------S------- 77 (449)
Q Consensus 12 ~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~g~~yf~~~~-------~------- 77 (449)
++++-....|.+.+.++|+.|||.++.-..+.|+|.+.-++++++|+++|+|| .|||+.. -
T Consensus 61 tD~~R~~~~~~~~I~~dL~WLGl~wD~~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~cs~eel~~~r~~~~~~g~~ 135 (331)
T d1gtra2 61 TNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAY-----VDELTPEQIREYRGTLTQPGKN 135 (331)
T ss_dssp CCGGGCCHHHHHHHHHHHHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHTCCSSSCCCC
T ss_pred CCCCcccchHHHHHHHHHHHHhccccccceecchHHHHHHHHHHhhhhcCCcc-----cccccHHHHHHHHhhhhccCCC
Confidence 45556667899999999999999985456678999999999999999999999 4565521 0
Q ss_pred Ccccccc-Cccc---ccccCCCC-----C---ccccccc--Cccchhcccccc-CCC-CcccCCCCCCCCCchhhhHHHH
Q 013130 78 PNYGRLS-GQRL---ENNRAGER-----V---AVDSRKR--NPADFALWKAAK-AGE-PSWDSPWGPGRPGWHIECSAMS 141 (449)
Q Consensus 78 ~~yg~ls-~~~l---~~~~~g~~-----~---~~~~~k~--~~~Df~lwk~~~-~~~-~~w~s~WG~grPgWh~e~~~~~ 141 (449)
+.|.... ...+ +.+..+.. + .++.... ...|+++..... ++. +-+. ..|.|.+|..++.-
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~d~~~~~~~~~~~d~v~~r---~dg~ptY~lA~vVD- 211 (331)
T d1gtra2 136 SPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNK---WCIYPMYDFTHCIS- 211 (331)
T ss_dssp CTTTTCCHHHHHHHHHHHHHTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTS---CSEEECHHHHHHHH-
T ss_pred CCCCCccccccHHHhhHHhhccccCCceEEEEecccCCCceeEEccceeeeccCCCcccccc---cccccHHhhhHHHh-
Confidence 0111000 0000 00001100 0 0000000 011222211000 000 0000 13456677655321
Q ss_pred HhhcCCCccEEeecccCcCchhHHHHHHH---hhccCCCCCcEEEeeeeeeeCCccccccCC---------------Ccc
Q 013130 142 AHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLG---------------NFF 203 (449)
Q Consensus 142 ~~~~g~~~Dih~~GkDli~~H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlG---------------N~i 203 (449)
....| ++..+=|.|++ .+-+.|. .+++.+.++.+ .|...+..+|.||||+.+ ...
T Consensus 212 D~~~g--IThViRG~D~l----~~T~~q~~l~~~Lg~~~p~~~-h~~~~l~~~g~~lskr~l~~~~~~~~~~~~dd~~~~ 284 (331)
T d1gtra2 212 DALEG--ITHSLCTLEFQ----DNRRLYDWVLDNITIPVHPRQ-YEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMP 284 (331)
T ss_dssp HHHHT--CSEEEEEGGGT----TTHHHHHHHHHHSCCSCCCEE-EEECCCCBTTSCCCHHHHHHHHHTTSSSSTTCTTSC
T ss_pred hhhhc--ccceecccccc----cccHHHHHHHHhccCCCCcce-eeccccccccchhhhcccchhcccCccccccCCCcc
Confidence 12223 45555579944 4444443 45555444433 455666789999999853 234
Q ss_pred CHHHHHH-hcChhHHHHHHhhcCcC-CCcccCHHHHHHH
Q 013130 204 TIRQITE-RYHPLALRHFLISAHYR-SPLNYSVLQLDSA 240 (449)
Q Consensus 204 ~~~dll~-~yg~D~lR~~ll~~~~~-~d~~fs~~~l~~~ 240 (449)
++.++-+ .|.|++++=|++.-.++ .|..+....|.+.
T Consensus 285 sl~~lr~~G~~peai~nyla~LGws~~d~~~e~~sLe~~ 323 (331)
T d1gtra2 285 TISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESC 323 (331)
T ss_dssp BHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHH
T ss_pred cHHHHHHCCCCHHHHHHHHHHhCCCCCCCcccHHhHHHH
Confidence 6677654 59999999888773222 2333455555544
No 20
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=97.68 E-value=6.5e-05 Score=67.11 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCcccC-CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHHHhhhcccC
Q 013130 245 FYIYQTLQDCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQ 321 (449)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~--~~N~yi~~~~pw~ 321 (449)
++|||+.+++..+..++.+. ......|+|++.+++.+..++.++| ++|+++.|++. +++|+. .++.|++..++..
T Consensus 2 NKlwNa~rF~~~~~~~~~~~~~~~~~~Dkwil~~l~~~i~~v~~~~-~~y~f~~a~~~-l~~F~~~~l~d~Y~e~~k~~~ 79 (218)
T d1ivsa2 2 NKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPAL 79 (218)
T ss_dssp HHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHTTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHH-HHHHhhhhhHHHHHHHHhhhc
Confidence 47899888876665554432 1223357999999999999999999 99999999999 999974 6788998877642
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHHH
Q 013130 322 PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 363 (449)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~~ 363 (449)
.. . ......++...+..++++|. |+|- .++++++.+.
T Consensus 80 ~~-~---~~~~~~~l~~~l~~~l~ll~P~~Pf-itEeiw~~l~ 117 (218)
T d1ivsa2 80 KA-G---NAHTLRTLEEVLAVLLKLLHPMMPF-LTSELYQALT 117 (218)
T ss_dssp HT-T---BHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHH
T ss_pred cc-c---cccccchhHHHHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 11 1 12233445567777888887 6665 6677777664
No 21
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=97.44 E-value=0.00022 Score=61.56 Aligned_cols=116 Identities=8% Similarity=0.056 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHh--cCCcccC-----CCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHHH
Q 013130 244 VFYIYQTLQDCEVA--LSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSL 314 (449)
Q Consensus 244 l~~l~~~~~~~~~~--~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~--~~N~yi 314 (449)
+++|||+++++..+ +.++... ......|+|++++++.+.+++.++| ++|++++|+.. +.+|+. .++.|+
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~-~~~~f~~a~~~-l~~f~~~~l~~~Y~ 79 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYV 79 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTH
T ss_pred CcHHHHHHHHHHHhccccCCCccCCCChhhCCHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHH-HHHHhHhhhhHHHH
Confidence 46789988776532 2222211 1123367899999999999999999 99999999999 998864 567787
Q ss_pred hhhcccCc-hhhhhhhHHHHHHHHHHHHHHHHHhc-CCCCCChhHHHHHH
Q 013130 315 NMLKKKQP-KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 362 (449)
Q Consensus 315 ~~~~pw~~-~~~~~~~~~~l~~~~~~l~~~l~ilg-i~~~~~~~~~~~~~ 362 (449)
+..++-.- ..+...+.....++...+..++.+|. |+|- .++++.+.+
T Consensus 80 e~~K~~l~~~~~~~~~~~~~~~l~~il~~~l~llaP~~Pf-itEEiw~~l 128 (180)
T d1ilea1 80 RRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPF-LAEVLWQNL 128 (180)
T ss_dssp HHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTT-HHHHHHHHH
T ss_pred HhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 77665210 11112223334456677788888887 6776 677777766
No 22
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=97.30 E-value=0.00028 Score=57.16 Aligned_cols=78 Identities=8% Similarity=0.075 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 013130 269 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 348 (449)
Q Consensus 269 ~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg 348 (449)
..|++++..++.++.+++++| +.|+++.|++. +++|+..++.+......+ .. +...+..++++|.
T Consensus 30 ~~dk~~~~~l~~~i~~v~~~~-e~~~fn~ai~~-l~~f~n~l~~~~~~~~~~----------~~---~~~~l~~ll~ll~ 94 (128)
T d1h3na1 30 GKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLNALYEYRKDRPVT----------PV---YRTAIRYYLQMLF 94 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHSCSC----------HH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhccchHHHHH-HHHhhcccchhhhhhhhH----------HH---HHHHHHHHHHHHH
Confidence 457899999999999999999 89999999999 999998888776554321 12 2345666778887
Q ss_pred -CCCCCChhHHHHHH
Q 013130 349 -LLPPGAYSEVLQQL 362 (449)
Q Consensus 349 -i~~~~~~~~~~~~~ 362 (449)
|+|- .++++++.+
T Consensus 95 P~~P~-itEeiw~~l 108 (128)
T d1h3na1 95 PFAPH-LAEELWHWF 108 (128)
T ss_dssp TTSHH-HHHHHHTTT
T ss_pred HHHHH-HHHHHHHHh
Confidence 5665 455555444
No 23
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}
Probab=96.52 E-value=0.00078 Score=64.11 Aligned_cols=69 Identities=25% Similarity=0.199 Sum_probs=47.5
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC-ccccccCCCccCHHHHHHhcChhHHHHHHhhc
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA 224 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 224 (449)
..|+..||.|. .||.+.-+-...-++... +.. +|+-++. .+| .|||||.||.|.+.| +|+.++=++++.
T Consensus 183 ~~~~vp~G~DQ-~~~i~l~Rdla~r~~~~~-~~~-~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~i~~Ki~~~ 253 (343)
T d1h3fa1 183 RADVEMGGTDQ-RFNLLVGREVQRAYGQSP-QVC-FLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 253 (343)
T ss_dssp TCSEEEEEGGG-HHHHHHHHHHHHHTTCCC-CEE-EEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred cccccccccch-HHHHHHHHHHHhhcCccc-cce-eeccccccccccchhhcccccceeeec-----hhHHHHHHHhcC
Confidence 47899999998 457765554444444433 333 4555554 588 599999999998876 788887666653
No 24
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.37 E-value=0.0081 Score=48.03 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcccCchhh-hhhhHHHHHHHHHHHHHHHHHhcCC
Q 013130 272 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRILGLL 350 (449)
Q Consensus 272 ~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw~~~~~-~~~~~~~l~~~~~~l~~~l~ilgi~ 350 (449)
..++..+..+.+.+..+. ++++++..... ++++++.+|+|++..+......+ ...+...+.++..+|...+.+|||.
T Consensus 42 ~~Li~~l~~~p~vl~~a~-~~~~Ph~l~~y-l~~La~~F~~fY~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~lLGI~ 119 (124)
T d1f7ua1 42 KLLIRLLGQYPDVLRNAI-KTHEPTTVVTY-LFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLT 119 (124)
T ss_dssp HHHHHHHTTHHHHHHHHH-HHCCHHHHHHH-HHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 456777778888888898 99999999999 99999999999988765321111 1346778889999999999999997
Q ss_pred CC
Q 013130 351 PP 352 (449)
Q Consensus 351 ~~ 352 (449)
+.
T Consensus 120 ~~ 121 (124)
T d1f7ua1 120 PV 121 (124)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 25
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=95.98 E-value=0.0021 Score=60.30 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=37.4
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 207 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~d 207 (449)
.+||++||.|..+.+..- +-...-..+.+++-+ ++.-.++ .+|+|||||.||.|.+.+
T Consensus 185 ~~~iqiGGsDQ~~Ni~~G-rdl~~~~~~~~~~~~-it~pLl~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 185 NCKIQVGGSDQWGNITSG-IELMRRMYGQTDAYG-LTIPLVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp CEEEEEEEGGGHHHHHHH-HHHHHHHHCCCCCEE-EEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred hchhhhhccccHHHhhhh-hhhhhhhcccccceE-EecccccchhhhhhhhcCCCCeeeec
Confidence 589999999988765432 111122234333433 4444554 489999999999997654
No 26
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=95.63 E-value=0.033 Score=44.36 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhccc------Cch--hhhhhhHHHHHHHHHHHHHH
Q 013130 272 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKK------QPK--QQQLSLIESLRKIENEVKEV 343 (449)
Q Consensus 272 ~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~pw------~~~--~~~~~~~~~l~~~~~~l~~~ 343 (449)
..++..+..+.+.+..+. ++++++..... ++++++..|.|.+..+-. ... .....+...+.++..+|...
T Consensus 37 ~~Li~~l~~~p~vl~~a~-~~~~Ph~l~~y-l~~La~~F~~fY~~~~~~~~~~~i~~~~~~~~~~RL~L~~a~~~vL~~g 114 (126)
T d1iq0a1 37 RALALDLLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATG 114 (126)
T ss_dssp HHHHHHHTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhHHHHHH-HHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888898999 89999999999 999999999999754421 100 11234667788999999999
Q ss_pred HHHhcCCCC
Q 013130 344 LRILGLLPP 352 (449)
Q Consensus 344 l~ilgi~~~ 352 (449)
+.+|||.|.
T Consensus 115 L~lLGI~~~ 123 (126)
T d1iq0a1 115 LDLLGIPAP 123 (126)
T ss_dssp HHHTTCCCC
T ss_pred hhhcCCCcc
Confidence 999999875
No 27
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=94.17 E-value=0.0069 Score=56.30 Aligned_cols=53 Identities=30% Similarity=0.378 Sum_probs=27.3
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCc-cccccCCCccCHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQ 207 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKSlGN~i~~~d 207 (449)
..|+.+||.|..+ |+.. +.-.+ +.. .+.+++-++. .+|+ |||||.||.|.+.|
T Consensus 163 ~~~~~~~G~DQ~~-~~~l--~rdl~---~~~-~~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 163 GVDVAVGGMEQRK-IHML--ARELL---PKK-VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp TCSEEEEEGGGHH-HHHH--HHHHS---SSC-CEEEEECCCCCTTCCC-------CSCBTTC
T ss_pred CcceeccchhhHH-HHHH--hhhcc---ccc-ceecccccccCcccccccccccccccccCC
Confidence 5799999999854 4432 21111 222 2335656664 5885 99999999997654
No 28
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=92.41 E-value=0.049 Score=50.51 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=35.9
Q ss_pred CccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCccccccCCCccCHHH
Q 013130 148 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 207 (449)
Q Consensus 148 ~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~d 207 (449)
.+++++||.|..+.+..---.+ ....++..+-. ++.-.++ .+|+|||||.||.|++.+
T Consensus 185 ~~~~qiGGsDQ~gNi~~G~dli-~~~~~~~~~~~-lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 185 GCRLQIGGSDQWGNITAGLELI-RKTKGEARAFG-LTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHH-HHHHC--CCEE-EEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCchhhccchhhhHHHHHHHHH-HHhcccccceE-eecccccccccceeeecCCCCccccc
Confidence 5899999999877654332222 22223333322 4545554 489999999999887543
No 29
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.46 E-value=0.15 Score=47.41 Aligned_cols=73 Identities=21% Similarity=0.010 Sum_probs=41.6
Q ss_pred hhcCCCccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCCcccccc-CCCccCHHHHHHhcChhHHHHH
Q 013130 143 HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKS-LGNFFTIRQITERYHPLALRHF 220 (449)
Q Consensus 143 ~~~g~~~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKS-lGN~i~~~dll~~yg~D~lR~~ 220 (449)
.++-...|+..||.|... |++.-.-...-.+. .++.. +|+-++. .+|.||||| .||.|.+.| +++.++-=
T Consensus 170 Dil~~~ad~v~~G~DQ~~-~i~l~rd~a~r~~~-~~~~~-l~~pll~~l~g~kmsks~~~~~I~l~D-----~~~~I~kK 241 (339)
T d1n3la_ 170 DEEYLKVDAQFGGIDQRK-IFTFAEKYLPALGY-SKRVH-LMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKK 241 (339)
T ss_dssp HHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTC-CCCEE-EEECCCCCSSCC-------CCSCBTTC-----CHHHHHHH
T ss_pred HHHhccCCccccchhHHH-HHHHHHHHHhhhcc-Cccee-eeeccccccccccccccchhhcccccC-----CHHHHHHH
Confidence 333346899999999865 66554444333333 33434 4555665 599999997 599988766 56666655
Q ss_pred Hhh
Q 013130 221 LIS 223 (449)
Q Consensus 221 ll~ 223 (449)
+.+
T Consensus 242 I~~ 244 (339)
T d1n3la_ 242 LKK 244 (339)
T ss_dssp HHT
T ss_pred Hhh
Confidence 544
No 30
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.48 E-value=1.1 Score=42.13 Aligned_cols=56 Identities=14% Similarity=-0.050 Sum_probs=35.1
Q ss_pred ccEEeecccCcCchhHHHHHHHhhccCCCCCcEEEeeeeee-eCC--ccccccCCC-ccCHHH
Q 013130 149 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 207 (449)
Q Consensus 149 ~Dih~~GkDli~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 207 (449)
.++..+|.|..+ |+..-.=...-++.+++ .. +|+.++. .+| .|||||.+| .|.+.|
T Consensus 223 ~~lvpvG~DQ~~-h~~ltRDia~r~~~~~p-~~-l~~~~lpgL~G~~~KMSsS~~~s~I~l~D 282 (386)
T d1r6ta2 223 QCLIPCAIDQDP-YFRMTRDVAPRIGYPKP-AL-LHSTFFPALQGAQTKMSASDPNSSIFLTD 282 (386)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHGGGGTCCCC-EE-EEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred ccccccchhHHH-HHHHHHHHHHHhCCCCc-ee-eccccccCCCCcccccccCCCCceeeecC
Confidence 347888999765 66655544444444333 34 5666764 566 599999876 576544
No 31
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=58.41 E-value=17 Score=24.79 Aligned_cols=57 Identities=9% Similarity=0.212 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 13 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 13 ~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
||.+++. +.+.+....-.+.+-+..|-..+ ....|.+.++.|.+.|+++...|.++|
T Consensus 3 s~~~~~~---e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 66 (74)
T d1hw1a1 3 SPAGFAE---EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTK 66 (74)
T ss_dssp SHHHHHH---HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CHHHHHH---HHHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEeCceEE
Confidence 3444444 44666666667776677765443 345799999999999999999998888
No 32
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=55.57 E-value=1.5 Score=39.96 Aligned_cols=54 Identities=22% Similarity=0.025 Sum_probs=29.0
Q ss_pred CCccEEeecccCcCchhHHHHHHHhhcc---CCC--CCcEEEe--ee-ee--eeCCccccccCCC
Q 013130 147 SKFDIHGGGIDLIFPHHENEIAQSCAAC---QDS--NVSYWMH--NG-HV--TNNNEKMSKSLGN 201 (449)
Q Consensus 147 ~~~Dih~~GkDli~~H~~~~~a~~~a~~---~~~--~~~~~~h--~g-~l--~~~G~KMSKSlGN 201 (449)
...|+-.+|.|... |++.-.=...-++ +.. .+...+. +. .+ ...+.|||||.+|
T Consensus 136 ~~~d~vpvG~DQ~~-h~eltRdia~r~n~~~~~~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~ 199 (326)
T d1i6la_ 136 YNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199 (326)
T ss_dssp TTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSC
T ss_pred cCccccccccchHH-HHHHHHHHHHHhhhccCCcccccccccccccceeeecCCccccccccCCC
Confidence 35789999999765 7776543332221 111 1111111 11 11 1246799999988
No 33
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=51.21 E-value=15 Score=25.28 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCeEeecCcEEEe
Q 013130 47 MEQIKDMITQIINNDCAYVVEGDVFFA 73 (449)
Q Consensus 47 ~~~v~~~i~~L~~~G~aY~~~g~~yf~ 73 (449)
...|.+.+..|.+.|+++...|.++|=
T Consensus 36 r~tvr~Al~~L~~~Gli~~~~g~G~~V 62 (78)
T d3bwga1 36 KSTITKSLELLEQKGAIFQVRGSGIFV 62 (78)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 457899999999999999999999884
No 34
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=44.30 E-value=21 Score=23.60 Aligned_cols=27 Identities=0% Similarity=0.345 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCeEeecCcEEEe
Q 013130 47 MEQIKDMITQIINNDCAYVVEGDVFFA 73 (449)
Q Consensus 47 ~~~v~~~i~~L~~~G~aY~~~g~~yf~ 73 (449)
...+.+++..|...|.+.....+.||.
T Consensus 37 e~~~~~lL~~l~~~G~lvkI~~d~yfh 63 (64)
T d1lvaa3 37 PSELEELLHYLVREGVLVKINDEFYWH 63 (64)
T ss_dssp HHHHHHHHHHHHHTTSEEESSSSBEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeccccccc
Confidence 568999999999999999998889884
No 35
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=37.52 E-value=14 Score=32.20 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcC-----CChhHhHHHHHHcHhCCCEEEecCC
Q 013130 378 LQLIEERAAARKN-----KDFSKSDQIRADLTRKGIALMDMGK 415 (449)
Q Consensus 378 ~~li~~R~~aR~~-----Kdf~~AD~IRd~L~~~Gi~i~D~~~ 415 (449)
++|++.|...-+. +.|.+++.|++.|.++|+.+.+.+.
T Consensus 5 ~~li~~rr~lh~~PEl~~~E~~T~~~i~~~L~~~G~~v~~~~~ 47 (261)
T d1ysja1 5 TRLINMRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQ 47 (261)
T ss_dssp HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCEECCCTT
T ss_pred HHHHHHHHHHHhCcCcCChHHHHHHHHHHHHHHCCCeEEEecC
Confidence 3578888777654 7899999999999999999987654
No 36
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=33.69 E-value=33 Score=23.06 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=27.1
Q ss_pred HHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEeec
Q 013130 24 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 67 (449)
Q Consensus 24 ~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~~ 67 (449)
.+++.++.||+.. ...|...+..|.++|++-...
T Consensus 26 s~rei~~~~g~~S----------~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 26 TRAEIAQRLGFRS----------PNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp CHHHHHHHTTCSS----------HHHHHHHHHHHHHTTSEEECS
T ss_pred CHHHHHHHcCCCC----------HHHHHHHHHHHHHCcCeecCC
Confidence 4677888888864 457889999999999998753
No 37
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.86 E-value=40 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCeEee-cCcEEEeC
Q 013130 47 MEQIKDMITQIINNDCAYVV-EGDVFFAV 74 (449)
Q Consensus 47 ~~~v~~~i~~L~~~G~aY~~-~g~~yf~~ 74 (449)
...|.+.++-|.+.|+||.. +.+=|-++
T Consensus 38 ~~~i~~aid~L~~eG~IYsTiDddHfkst 66 (69)
T d1dpua_ 38 VSSIKQAVDFLSNEGHIYSTVDDDHFKST 66 (69)
T ss_dssp HHHHHHHHHHHHHTTSEEECSSTTEEEES
T ss_pred HHHHHHHHHHHHhCCceecccccchhccc
Confidence 45788999999999999976 45444444
No 38
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.57 E-value=31 Score=22.92 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=28.2
Q ss_pred ChhHhHHHHHHcHhCCCEEEecCCC--eEEEeCCcch
Q 013130 392 DFSKSDQIRADLTRKGIALMDMGKE--TIWRPCVLVE 426 (449)
Q Consensus 392 df~~AD~IRd~L~~~Gi~i~D~~~g--t~W~~~~~~~ 426 (449)
+|...+.+|..|.+.|+.|.|+.-+ .+-....|.+
T Consensus 10 dY~~~~~v~~~L~~~~~~i~~~~y~~~V~l~v~vp~~ 46 (71)
T d1vi7a2 10 EYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAA 46 (71)
T ss_dssp CTTTHHHHHHHHHHTTCEEEEEEESSSEEEEEEECSS
T ss_pred ccccHHHHHHHHHHCCCEEEeeeeccEEEEEEEECHH
Confidence 6889999999999999999999644 5555656653
No 39
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.33 E-value=18 Score=27.02 Aligned_cols=26 Identities=4% Similarity=0.327 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCeEeecC---cEEEeCC
Q 013130 50 IKDMITQIINNDCAYVVEG---DVFFAVE 75 (449)
Q Consensus 50 v~~~i~~L~~~G~aY~~~g---~~yf~~~ 75 (449)
-.+.|..|.++|++|.+++ ++||=++
T Consensus 80 FKeAi~~Lqe~G~VFqK~~~~D~lYyVT~ 108 (120)
T d1wj5a_ 80 FKNALQLLQEKGLVFQRDSGSDKLYYVTT 108 (120)
T ss_dssp HHHHHHHHHHHTSEECSSCSSSCCBEECS
T ss_pred HHHHHHHHHHCCEEEecCCCccceEEeec
Confidence 4578999999999999854 5888443
No 40
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=26.01 E-value=16 Score=26.48 Aligned_cols=50 Identities=8% Similarity=0.043 Sum_probs=34.5
Q ss_pred HHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEEe
Q 013130 24 EYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFFA 73 (449)
Q Consensus 24 ~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf~ 73 (449)
.+++....-.+.+-+..|...+ ....|.+.+..|.+.|+++...|.++|=
T Consensus 17 ~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V 73 (100)
T d1v4ra1 17 HFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVV 73 (100)
T ss_dssp HHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEES
T ss_pred HHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCEEEE
Confidence 3444444445555455554332 3357899999999999999999999883
No 41
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=25.58 E-value=84 Score=20.52 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCCCCCCCccccccc-------cHHHHHHHHHHHHHcCCeEeecCcEEE
Q 013130 20 RYCQEYLVDMADLQCLPPTYQPRVSD-------HMEQIKDMITQIINNDCAYVVEGDVFF 72 (449)
Q Consensus 20 ~~~~~f~~~~~~L~I~~~d~~~rtt~-------h~~~v~~~i~~L~~~G~aY~~~g~~yf 72 (449)
+..+.+++....=.+.+-+..| ..+ .-..|.+.+..|.+.|+++...+.++|
T Consensus 6 qi~~~l~~~I~~g~~~~G~~l~-~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~ 64 (69)
T d2hs5a1 6 RVAGILRDAIIDGTFRPGARLS-EPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVF 64 (69)
T ss_dssp HHHHHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHcCCCCCcCccC-HHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCCEEE
Confidence 3445555555555565544443 222 234689999999999999999988888
Done!