BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013131
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
Length = 323
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 55/228 (24%)
Query: 3 PEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAG 62
PEVQ V ++ DSL +A A K+ I GVDFM+E + IL+
Sbjct: 50 PEVQDVAD---------FVGDSLELARKATKV---DADVIVFAGVDFMAETAK-ILNPDK 96
Query: 63 FQDVGVYRMSGERIGCSLADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELV 122
+ + +R C++A+ + LEA P + V+Y+N++ ETKAYA
Sbjct: 97 -----IVLIPNKRATCAMANMLKV---KHILEAKKKYPNAPVVLYVNSTAETKAYA---- 144
Query: 123 PTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQIAMMSDEEIAEIHPKH 182
+T TS+N V I + + + I +GPD L +A ++ + I I P
Sbjct: 145 -DVTVTSANAVDIIRKLDSDV----IIFGPDK-------NLAHYVAKVTGKTIIPIPP-- 190
Query: 183 NKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLE 230
+G C VH F E VE+ +++ +A L H E
Sbjct: 191 ----------------EGHCYVHKKFTIEDVERAKKLHPNAKLMVHPE 222
>pdb|1WZU|A Chain A, Crystal Structure Of Quinolinate Synthase (Nada)
Length = 300
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 55/228 (24%)
Query: 3 PEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAG 62
PEVQ + +I DSL +A A ++ I GVDFM+E + IL+
Sbjct: 26 PEVQDIAD---------FIGDSLELARRATRV---DADVIVFAGVDFMAETAK-ILNPDK 72
Query: 63 FQDVGVYRMSGERIGCSLADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELV 122
V + C++A+ + LEA P + V+Y+N++ E KAYA
Sbjct: 73 -----VVLIPSREATCAMANMLKVE---HILEAKRKYPNAPVVLYVNSTAEAKAYA---- 120
Query: 123 PTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQIAMMSDEEIAEIHPKH 182
+T TS+N V+ + + + + + +GPD L +A M+ ++I + K
Sbjct: 121 -DVTVTSANAVEVVKKLDSDV----VIFGPDK-------NLAHYVAKMTGKKIIPVPSK- 167
Query: 183 NKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLE 230
G C VH F + VE+ +++ +A L H E
Sbjct: 168 -----------------GHCYVHQKFTLDDVERAKKLHPNAKLMIHPE 198
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 2 DPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILD-- 59
DP +TA K+ P+ + DS V D+ AGC++IT+ G D + A
Sbjct: 141 DPTQDSPITAITKF-PYQWTIDSNVTTDSV--RTSAGCKYITLYGYDPSRPSTPATYGKH 197
Query: 60 QAGFQDVGVYRMSGERIGCSLADAAATPAYMNYLEAASTNP 100
+ + V Y R LA+ AA P + + ++ + P
Sbjct: 198 RPTYATVFYYSTLPARSRL-LANLAAGPTVLEHFDSPTYGP 237
>pdb|3EZ4|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|F Chain F, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|G Chain G, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|H Chain H, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|I Chain I, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|J Chain J, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
Length = 269
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 30 TAVKMAKAGCQFITVLGVDFMSENVRAILDQA 61
+AVK+ +AG Q + + G ++++E VR ++++A
Sbjct: 105 SAVKLMRAGAQMVKLEGGEWLAETVRFLVERA 136
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 76 IGCSLADAAATPAYMNYLEAASTNP 100
IGCSL AAA PAY Y+E A +P
Sbjct: 54 IGCSLC-AAACPAYAIYVEPAENDP 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,354,614
Number of Sequences: 62578
Number of extensions: 468481
Number of successful extensions: 1050
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 5
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)