Query 013131
Match_columns 449
No_of_seqs 210 out of 936
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 00:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02673 quinolinate synthetas 100.0 2E-144 5E-149 1149.3 39.0 441 1-441 279-719 (724)
2 PF02445 NadA: Quinolinate syn 100.0 7E-103 2E-107 772.3 21.5 274 1-408 21-295 (296)
3 COG0379 NadA Quinolinate synth 100.0 2E-101 4E-106 764.1 28.5 279 1-409 44-322 (324)
4 PRK09375 quinolinate synthetas 100.0 3E-95 6E-100 726.9 29.5 275 1-409 42-317 (319)
5 TIGR00550 nadA quinolinate syn 100.0 8.4E-79 1.8E-83 607.1 28.9 279 1-409 27-309 (310)
6 TIGR00550 nadA quinolinate syn 100.0 1.4E-43 3.1E-48 354.1 21.6 201 88-401 9-210 (310)
7 PRK09375 quinolinate synthetas 100.0 6.8E-32 1.5E-36 271.0 18.4 178 1-242 130-310 (319)
8 COG0379 NadA Quinolinate synth 99.9 5.9E-23 1.3E-27 205.1 15.7 215 93-423 27-241 (324)
9 PF02445 NadA: Quinolinate syn 99.9 7.1E-23 1.5E-27 203.7 12.1 218 87-425 2-219 (296)
10 PLN02673 quinolinate synthetas 99.7 6.6E-17 1.4E-21 174.6 17.7 268 88-425 258-541 (724)
11 KOG0622 Ornithine decarboxylas 57.9 1E+02 0.0022 33.6 10.9 109 88-233 69-177 (448)
12 TIGR02195 heptsyl_trn_II lipop 56.6 1.7E+02 0.0037 29.1 11.9 30 274-316 250-279 (334)
13 TIGR02201 heptsyl_trn_III lipo 50.9 1.8E+02 0.0039 29.2 11.0 15 274-288 259-273 (344)
14 PRK10916 ADP-heptose:LPS hepto 46.1 1.6E+02 0.0034 29.8 9.8 30 274-316 260-289 (348)
15 cd04726 KGPDC_HPS 3-Keto-L-gul 44.1 71 0.0015 29.5 6.5 56 207-262 38-101 (202)
16 TIGR03128 RuMP_HxlA 3-hexulose 41.8 1.1E+02 0.0023 28.6 7.3 54 207-262 37-100 (206)
17 cd03789 GT1_LPS_heptosyltransf 38.7 3.7E+02 0.0081 26.0 11.1 78 20-109 9-89 (279)
18 COG0075 Serine-pyruvate aminot 37.7 2.7E+02 0.006 29.8 10.3 84 124-233 57-144 (383)
19 COG2984 ABC-type uncharacteriz 37.0 2.4E+02 0.0053 29.7 9.6 77 77-159 135-226 (322)
20 PRK10422 lipopolysaccharide co 35.4 4.5E+02 0.0097 26.6 11.2 19 364-382 324-342 (352)
21 COG0514 RecQ Superfamily II DN 32.5 1.2E+02 0.0027 34.2 7.0 164 86-296 71-252 (590)
22 PLN02757 sirohydrochlorine fer 32.2 1.1E+02 0.0023 28.4 5.6 43 210-271 93-135 (154)
23 COG0678 AHP1 Peroxiredoxin [Po 31.7 1.4E+02 0.003 28.7 6.2 83 50-162 27-113 (165)
24 PF02602 HEM4: Uroporphyrinoge 28.6 94 0.002 29.0 4.7 18 124-141 45-62 (231)
25 cd00452 KDPG_aldolase KDPG and 26.7 2.4E+02 0.0051 26.4 7.0 61 209-283 42-105 (190)
26 PRK10964 ADP-heptose:LPS hepto 26.7 3.7E+02 0.008 26.7 8.7 30 274-316 252-281 (322)
27 COG4229 Predicted enolase-phos 26.1 93 0.002 30.8 4.1 74 86-168 106-200 (229)
28 PRK14336 (dimethylallyl)adenos 26.0 5.3E+02 0.011 27.4 10.2 28 200-227 45-78 (418)
29 PF06183 DinI: DinI-like famil 25.8 50 0.0011 26.7 2.0 27 207-233 8-34 (65)
30 PRK07807 inosine 5-monophospha 25.4 62 0.0013 35.4 3.2 42 206-251 252-294 (479)
31 cd08590 PI-PLCc_Rv2075c_like C 24.5 98 0.0021 31.2 4.2 37 76-112 81-117 (267)
32 PRK08811 uroporphyrinogen-III 23.5 5.4E+02 0.012 25.7 9.1 37 124-165 72-110 (266)
33 PF11823 DUF3343: Protein of u 22.5 57 0.0012 26.1 1.7 40 57-99 20-62 (73)
34 TIGR01574 miaB-methiolase tRNA 22.3 6.1E+02 0.013 27.0 9.8 36 200-235 44-88 (438)
35 COG1519 KdtA 3-deoxy-D-manno-o 22.1 2.5E+02 0.0054 30.6 6.8 65 209-290 247-314 (419)
36 TIGR00269 conserved hypothetic 21.6 93 0.002 26.8 3.0 31 71-101 24-55 (104)
37 COG2045 Phosphosulfolactate ph 21.6 2.2E+02 0.0048 28.7 5.9 51 107-165 77-129 (230)
38 TIGR02371 ala_DH_arch alanine 21.0 3.3E+02 0.0072 27.9 7.3 74 35-128 124-198 (325)
39 PRK14333 (dimethylallyl)adenos 20.7 6.6E+02 0.014 26.9 9.7 37 200-236 50-95 (448)
40 COG0042 tRNA-dihydrouridine sy 20.5 1E+02 0.0022 31.9 3.4 49 41-96 70-130 (323)
No 1
>PLN02673 quinolinate synthetase A
Probab=100.00 E-value=2.2e-144 Score=1149.28 Aligned_cols=441 Identities=85% Similarity=1.281 Sum_probs=430.9
Q ss_pred CChhHHHHhhhhhccCCCeeeechHHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSL 80 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDSL~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsM 80 (449)
|+||||+||||++++||||||||||+|||+|++|++++|++||||||||||||||+||||++|++++||||||++|||||
T Consensus 279 q~pEVQ~iADa~~~~~p~~~vGDSL~LA~~A~~~~~~~a~~IVFcGV~FMAEtA~kIL~p~~~~~k~V~llPd~~AGCsM 358 (724)
T PLN02673 279 MDPEVQGVLTAAQKHWPHISISDSLIMADSAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFGEVGVYRMSNERIGCSL 358 (724)
T ss_pred CCHHHHHHhhhhhcccCCCeeccHHHHHHHHHHhccCCCCEEEEeceeeHHhhHHHhcCCCccCCceEEeCCCCCCCCCh
Confidence 89999999999999999999999999999998888999999999999999999966999998888888899999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHH
Q 013131 81 ADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANI 160 (449)
Q Consensus 81 Adm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nv 160 (449)
|||++.++|++||+++.+||+.+||+||||||||||+||.+|||||||||||++||+|||+++|+++|||+||+|||+|+
T Consensus 359 Adma~~~~~~~~~~~~~~~p~~~vV~YINTSAevKA~ag~~~gdi~CTSSNAvkiV~~A~~~~p~~~IlF~PD~nLG~nv 438 (724)
T PLN02673 359 ADAASTPAYMNYLEAASASPPSLHVVYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQMPELNIWYGPDSYMGANI 438 (724)
T ss_pred hhcCCHHHHHHHHHHHhhCCCCceEEEecCcHHHHhhccCCCCCeEEeCccHHHHHHHHHhhCCCCeEEEeCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHhhcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHH
Q 013131 161 TELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAM 240 (449)
Q Consensus 161 a~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~ 240 (449)
++.++++++|++++|+.|||.+++.+++++.++.+|+|+|+|+||++|++++|+++|++||||+|++||||++||+++||
T Consensus 439 a~~~~~~~~~~~~~i~~~~p~~~~~t~~~~~~~~~ilw~G~C~VH~~F~~e~v~~~r~~yPdA~v~aHPEC~~EV~~lAD 518 (724)
T PLN02673 439 VKLFQQMTLMTDEEIANIHPKHNLDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINYMYCDAFLTAHLEVPGEMFSLAM 518 (724)
T ss_pred HHHhhhccCCCHHHheeccccccccchhhccccceeccCCcchhccCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHhh
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCCc
Q 013131 241 EAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSSD 320 (449)
Q Consensus 241 ~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (449)
||++|||||||||++||+|++++++||++|+++++++||||||.||+|||||+||+++.++++.|..++++||+|||++|
T Consensus 519 ~~~~~~~d~VGSTs~Ii~~v~~~~~~a~~~~a~~~~~fiIgTE~Gmv~riv~~~~~~~~~~~~~~~~~~~~ei~fpvs~~ 598 (724)
T PLN02673 519 EAKRRGMGVVGSTQNILDFIKQRVQEALDRNVNDHLQFVLGTESGMVTSIVAAVRSLLGSSKSSKSADVKVEIVFPVSSD 598 (724)
T ss_pred hhccccCCEEECHHHHHHHHHHhccccccccCCCCCEEEEEEChhHHHHHHHHHHHHHHhccccccCCceEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHHh
Q 013131 321 SMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKLQ 400 (449)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a~ 400 (449)
||++++.+++.+.++.+.++.++++|||+++|||||+.||||+|||||||+|+.|+++|+.|..+++.+..+++.||+++
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~vpg~~~gegcs~~ggca~cp~mkmn~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (724)
T PLN02673 599 SMTKTSSNSSLGRNSIKVGDVILPVIPGVASGEGCSIHGGCASCPYMKMNSLSSLLKVCHHLPDEKNVLGGYEAERFKLQ 678 (724)
T ss_pred hhhccCCCcccccccccccccccccccCCCCCCCcccCCCccCCcccccccHHHHHHHHHhcCCccccccccChhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred hhhhhhHHhhcCcchHHHHhHHHhcCCChHHHhhhhcCCCC
Q 013131 401 TLQGKSIADVGCEPILHMRHFQAKKELPEKLVNQVIHPHSG 441 (449)
Q Consensus 401 ~~l~r~~~~~~~~pi~~M~~f~~~~~~~~~~~~~~~~~~~~ 441 (449)
.+.|++++++||+||+|||+||++++|||+||++++++|+.
T Consensus 679 ~~~g~~~~~~g~~pil~mr~~~~~~~~~~~l~~~~~~~~~~ 719 (724)
T PLN02673 679 TPNGKSIADVGCEPILHMRHFQATKELPEKLVSQVLSCESN 719 (724)
T ss_pred CCCCCcHhhcCCchhhhHHhhhhcccCCHHHHhhhcccCCC
Confidence 99999999999999999999999999999999999999974
No 2
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=100.00 E-value=7.3e-103 Score=772.28 Aligned_cols=274 Identities=32% Similarity=0.486 Sum_probs=208.6
Q ss_pred CChhHHHHhhhhhccCCCeeeechHHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSL 80 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDSL~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsM 80 (449)
|+||||++|| ||||||+|||+| ++++|++|||||||||||||| ||||+ |+|||||++|||||
T Consensus 21 q~~eIq~iAD---------~vGDSl~La~~A---~~~~a~~IVfcGV~FMAEtAk-IL~P~-----K~VllPd~~AgC~M 82 (296)
T PF02445_consen 21 QRPEIQDIAD---------FVGDSLELARKA---AETDADIIVFCGVHFMAETAK-ILNPD-----KKVLLPDPEAGCPM 82 (296)
T ss_dssp S-HHHHHH-S---------EEE-HHHHHHHC---TT-SSSEEEEES-HHHHHHHH-HH-TT-----SEEE-SS-------
T ss_pred CCHHHHHHHH---------HhCCHHHHHHHH---HhCCCCEEEEecceehHhhHH-hhCCC-----CEEEecCCCCCCch
Confidence 7899999999 999999999998 889999999999999999996 99995 77899999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCc-EEEecCcchHHH
Q 013131 81 ADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLN-IWYGPDSYMGAN 159 (449)
Q Consensus 81 Adm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~-IlF~PD~~LG~n 159 (449)
|||++++++++|+++ ||+.+||+||||||||||.+ |+|||||||++|| +++|.++ |||+||+|||+|
T Consensus 83 Adm~~~~~v~~~k~~---~p~~~vV~YVNssAevKA~s-----di~cTSsNA~kIv----~~l~~~~~IlF~PD~nLG~~ 150 (296)
T PF02445_consen 83 ADMATAEDVRELKEE---YPDAAVVTYVNSSAEVKAES-----DICCTSSNAVKIV----RSLPQDKKILFLPDKNLGRY 150 (296)
T ss_dssp -TT--HHHHHHHHHH---STTS-EEEESSS-HHHHTT------SEEE-TTTHHHHH----HCSS-SE-EEEES-HHHHHH
T ss_pred hhhCCHHHHHHHHHH---CCCCeEEEEecChHHHHccC-----CeEEECccHHHHH----HHhcCCCeEEEcCcHHHHHH
Confidence 999999999998876 99999999999999999988 9999999999999 5577676 999999999999
Q ss_pred HHHHHHHhhcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHH
Q 013131 160 ITELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLA 239 (449)
Q Consensus 160 va~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA 239 (449)
+++++++ + +|+|+|+|+||++|++++|+++|++||||+|+|||||++||+++|
T Consensus 151 v~~~~~k-------~--------------------ii~w~G~C~VH~~f~~~~i~~~r~~~P~a~vlvHPEC~~ev~~~A 203 (296)
T PF02445_consen 151 VARQTGK-------N--------------------IILWPGYCPVHERFTPEDIEKAREKHPDAKVLVHPECPPEVVELA 203 (296)
T ss_dssp HHHHH---------E--------------------EEESSSS--TGGG--HHHHHHHHCCSTTSEEEE-TTS-HHHHCT-
T ss_pred HHHhhCC-------e--------------------EEEECCCcccccccCHHHHHHHHHHCcCCEEEECCCCCHHHHHHh
Confidence 9998742 2 488999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCC
Q 013131 240 MEAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSS 319 (449)
Q Consensus 240 ~~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 319 (449)
||||||++||+|+++ ++.++||||||.||+|+| ++ .+|+|+||++ +
T Consensus 204 --------D~vGSTs~ii~~v~~----------~~~~~~iIgTE~gl~~~L----~~----------~~p~k~f~~~-~- 249 (296)
T PF02445_consen 204 --------DFVGSTSGIIKYVKE----------SPAKEFIIGTEIGLVHRL----KK----------ENPDKEFIPL-S- 249 (296)
T ss_dssp --------SEE--HHHHHHHCCG-----------S--EEEEES-CHHHHHH----HH----------H-TTSEEEET-T-
T ss_pred --------hhcCCHHHHHHHHHh----------CCCCeEEEEecchHHHHH----HH----------HCCCcEEEeC-C-
Confidence 999999999999998 466799999999999999 44 5899999988 1
Q ss_pred cccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHH
Q 013131 320 DSMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKL 399 (449)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a 399 (449)
+|+.||+||||||++|+++|+. ..++|.|+|+++.+|
T Consensus 250 ----------------------------------------~~~~C~~Mk~~tl~~l~~~L~~---~~~~I~v~~~i~~~A 286 (296)
T PF02445_consen 250 ----------------------------------------PCAICPNMKKITLEKLLDALEN---LENEIEVDEEIREKA 286 (296)
T ss_dssp ----------------------------------------TTSSSTT-----HHHHHHHHHH---T-SB----HHHHHHH
T ss_pred ----------------------------------------CCCcCcCccccCHHHHHHHHhc---CCCeEEcCHHHHHHH
Confidence 2469999999999999999885 469999999999999
Q ss_pred hhhhhhhHH
Q 013131 400 QTLQGKSIA 408 (449)
Q Consensus 400 ~~~l~r~~~ 408 (449)
+.+|+|||.
T Consensus 287 ~~al~rMle 295 (296)
T PF02445_consen 287 RKALERMLE 295 (296)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999986
No 3
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2e-101 Score=764.11 Aligned_cols=279 Identities=31% Similarity=0.466 Sum_probs=254.3
Q ss_pred CChhHHHHhhhhhccCCCeeeechHHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSL 80 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDSL~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsM 80 (449)
|+||||++|| ||||||+|||+| ++++||+|||||||||||||| ||||+ |+|||||++|||||
T Consensus 44 q~peIq~iAD---------~vGDSL~LAr~A---~~~~Ad~IVf~GV~FMaETAk-iLnPe-----K~VL~Pd~~AgCsm 105 (324)
T COG0379 44 QRPEIQDIAD---------FVGDSLELAREA---AKTDADTIVFAGVHFMAETAK-ILNPE-----KTVLLPDLEAGCSM 105 (324)
T ss_pred CCHHHHHHHH---------hhccHHHHHHHH---hhCCCCEEEEeceeehHhhHh-hcCCC-----CeEecCCCCCCCCc
Confidence 7999999999 999999999999 789999999999999999997 99996 66899999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHH
Q 013131 81 ADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANI 160 (449)
Q Consensus 81 Adm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nv 160 (449)
|+|++++++++|+++ ||+++||+||||||||||++ |||||||||++||+|+ +++++|||+||+|||+|+
T Consensus 106 A~~~~~~~~~~~~~~---~P~~~vV~YvNtsA~vKA~~-----Di~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yv 174 (324)
T COG0379 106 ADMITAEEVRAFKEK---HPDAPVVTYVNTSAEVKAEA-----DICCTSSNAVKVVESA---LDGDKILFLPDKNLGRYV 174 (324)
T ss_pred ccCCCHHHHHHHHHH---CCCCceEEEeeChHHHHhhc-----CeEEecchHHHHHHhc---cCCCcEEEcCcHHHHHHH
Confidence 999999999999875 99999999999999999999 8999999999999775 457899999999999999
Q ss_pred HHHHHHhhcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHH
Q 013131 161 TELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAM 240 (449)
Q Consensus 161 a~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~ 240 (449)
++++| .|+ +|+|+|+|+||++||.++|+++|++||||+|+|||||++||+++|
T Consensus 175 a~~tg------~k~--------------------ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvHPEC~~~Vv~~A- 227 (324)
T COG0379 175 AKQTG------AKK--------------------IILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVHPECPPEVVELA- 227 (324)
T ss_pred HHHcC------CCc--------------------EEEECCccchhhhcCHHHHHHHHHHCCCCEEEECCCCCHHHHHhc-
Confidence 99875 223 378999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCCc
Q 013131 241 EAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSSD 320 (449)
Q Consensus 241 ~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (449)
||+|||++|++|++. +++++||||||.||+++| |+ ..|+|+||.+..
T Consensus 228 -------D~vGST~~ii~~~~~----------~~~~~~iv~TE~g~~~~l----~~----------~~P~k~~~~~~~-- 274 (324)
T COG0379 228 -------DFVGSTSQIIKAVKA----------SPAQKFIVGTERGIVHRL----QK----------EAPDKEFIPLPT-- 274 (324)
T ss_pred -------cccccHHHHHHHHhc----------CCCceEEEEecHHHHHHH----HH----------HCCCCeEEccCC--
Confidence 999999999999997 789999999999999998 55 478888877722
Q ss_pred ccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHHh
Q 013131 321 SMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKLQ 400 (449)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a~ 400 (449)
.+| .|||||||||++|+|+|+...+ ++|+|+++++.+|+
T Consensus 275 --------------------------------~~~-------~C~~Mk~itL~~i~~~L~~~~~--~eV~V~~~i~~~A~ 313 (324)
T COG0379 275 --------------------------------AGA-------VCPTMKMITLEKILEALEEGGN--NEVTVDEEIAERAR 313 (324)
T ss_pred --------------------------------CCC-------cChhhhhhCHHHHHHHHHhCCC--ceEEeCHHHHHHHH
Confidence 354 9999999999999999885322 69999999999998
Q ss_pred hhhhhhHHh
Q 013131 401 TLQGKSIAD 409 (449)
Q Consensus 401 ~~l~r~~~~ 409 (449)
++++|||..
T Consensus 314 ~aleRMl~~ 322 (324)
T COG0379 314 RALERMLEL 322 (324)
T ss_pred HHHHHHHhh
Confidence 888877754
No 4
>PRK09375 quinolinate synthetase; Provisional
Probab=100.00 E-value=3e-95 Score=726.87 Aligned_cols=275 Identities=32% Similarity=0.492 Sum_probs=252.4
Q ss_pred CChhHHHHhhhhhccCCCeeeechHHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSL 80 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDSL~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsM 80 (449)
|+||||++|| |+||||+|||+| ++++|++|||||||||||||| ||||+ |+|||||++|||||
T Consensus 42 q~~eiq~~AD---------~~GDSl~Ls~~A---~~~~a~~IvfcGV~FMaEtAk-IL~p~-----k~VllP~~~AgC~m 103 (319)
T PRK09375 42 QRPEIQDLAD---------FTGDSLELARFA---AETDADTIVFCGVHFMAETAK-ILSPE-----KTVLLPDLEAGCSL 103 (319)
T ss_pred CCHHHHHHHH---------hhccHHHHHHHH---HhCCCCEEEEecceehhhhHH-hcCCC-----CeEECCCCCCCCcc
Confidence 7999999999 999999999998 789999999999999999996 99995 77899999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcC-CCCcEEEecCcchHHH
Q 013131 81 ADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQI-PDLNIWYGPDSYMGAN 159 (449)
Q Consensus 81 Adm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~-p~~~IlF~PD~~LG~n 159 (449)
|||++++++++||++ ||++++|+||||||||||++ |+|||||||++++ +++ ++++|||+||+|||+|
T Consensus 104 Ad~~~~~~i~~lk~~---~p~a~vVaYvNssaeVKA~a-----D~~cTSSnAl~iv----~~~~~~~~IlF~PD~~Lg~~ 171 (319)
T PRK09375 104 ADMCPAEEFRAFKEA---HPDATVVTYVNTSAAVKARA-----DIVCTSSNAVKIV----EALPQGKKILFLPDQHLGRY 171 (319)
T ss_pred cccCCHHHHHHHHHH---CCCCEEEEEeCCCHHHHHhC-----CeEEeCHHHHHHH----hccCCCCeEEEeCchHHHHH
Confidence 999999999999986 89999999999999999988 8999999999999 566 4788999999999999
Q ss_pred HHHHHHHhhcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHH
Q 013131 160 ITELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLA 239 (449)
Q Consensus 160 va~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA 239 (449)
++.+ |+++ +++|+|+|+||++|++++|+++|++||||+|++||||++||+++|
T Consensus 172 v~~l-------~~k~--------------------vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~HPEc~~eV~a~A 224 (319)
T PRK09375 172 VAKQ-------TGAD--------------------IILWPGHCIVHEEFTAEDLERLRAEYPDAKVLVHPECPPEVVALA 224 (319)
T ss_pred HHHc-------CCCE--------------------EEccCCcchhccCcCHHHHHHHHHHCcCCeEEEecCCCHHHHHhc
Confidence 9764 3344 378999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCC
Q 013131 240 MEAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSS 319 (449)
Q Consensus 240 ~~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 319 (449)
||+|||++|++||++ +++++||||||.||+++| ++ ++|+|+||++ +
T Consensus 225 --------D~vgSTs~~i~~v~~----------~~~~~~iigTE~~L~~~l----~~----------~~P~K~fi~~-~- 270 (319)
T PRK09375 225 --------DFVGSTSQIIKAAKA----------SPAKKFIVGTEIGIVHRL----QK----------ANPDKEFIPA-R- 270 (319)
T ss_pred --------CEEecHHHHHHHHHh----------CCCCeEEEEccHHHHHHH----HH----------HCCCCEEEEC-C-
Confidence 999999999999987 678999999999999999 33 5789888866 1
Q ss_pred cccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHH
Q 013131 320 DSMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKL 399 (449)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a 399 (449)
. |..||+||+|||++|+++|+ ++.++|+|+|+++.+|
T Consensus 271 ----------------------------------~------~~~C~~Mk~~tle~l~~~L~---~~~~~i~v~~~i~~~A 307 (319)
T PRK09375 271 ----------------------------------S------CAHCPTMKMITLEKLLEALE---EERNEITVDEEIAEKA 307 (319)
T ss_pred ----------------------------------C------CCcCcChhhcCHHHHHHHHh---cCCCeEEcCHHHHHHH
Confidence 1 35999999999999999766 6789999999999999
Q ss_pred hhhhhhhHHh
Q 013131 400 QTLQGKSIAD 409 (449)
Q Consensus 400 ~~~l~r~~~~ 409 (449)
+.+|+|||..
T Consensus 308 ~~~l~rMl~~ 317 (319)
T PRK09375 308 RLALERMLEL 317 (319)
T ss_pred HHHHHHHhhh
Confidence 9999999875
No 5
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=100.00 E-value=8.4e-79 Score=607.13 Aligned_cols=279 Identities=30% Similarity=0.454 Sum_probs=248.6
Q ss_pred CChhHHHHhhhhhccCCCeeeechHHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSL 80 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDSL~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsM 80 (449)
|+||||++|| |+||||+|++.| ++.++++||||||+||||||| ||+|+ |.|+||++++||||
T Consensus 27 ~~~Evk~~aD---------~~gdS~~l~~~a---~~~~~~~IvF~gv~fMae~a~-~l~p~-----k~vilp~~~a~C~~ 88 (310)
T TIGR00550 27 QKDEIQQIAD---------YTGDSLELAQIA---AKTDADIIVFCGVHFMGETAK-ILNPE-----KTVLMPDLGAGCSM 88 (310)
T ss_pred CCHHHHHhhc---------ceeeHHHHHHHH---HhCCCCEEEEeCCchHHHHHH-HhCCC-----CEEEccCCCCCCcc
Confidence 6899999999 999999999998 668999999999999999996 99995 66799999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHH
Q 013131 81 ADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANI 160 (449)
Q Consensus 81 Adm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nv 160 (449)
++|++++++++++++ ||++++|+|+||++||||+| |+||||||+++++.|++++ +++|||+||+|||+|+
T Consensus 89 a~~~~~~~i~~lk~~---~Pda~vvah~n~~aeVka~a-----D~v~TSsna~~~v~~~~~~--~~~Iif~pd~~L~~~~ 158 (310)
T TIGR00550 89 ADMCPPEEFKKLKER---HPDAFVVTYVNTTAEVKALA-----DIVCTSSNAVKVVEHLDKD--NKKILFLPDKNLGRYV 158 (310)
T ss_pred ccccCHHHHHHHHHH---CCCCEEEEECCCCHHHHHhC-----CEEEchHHHHHHHHhcccC--CCEEEEECchHHHHHH
Confidence 999999999888875 99999999999999999999 8999999999999653321 3689999999999988
Q ss_pred HHHHHHhhcCChhhhhhcCCCCCccchhcccccccccc--ccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHH
Q 013131 161 TELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQ--DGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSL 238 (449)
Q Consensus 161 a~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw--~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~l 238 (449)
... |++++ ++| +|+|++|++||+++|.++|++||+++|++||||++||+++
T Consensus 159 ~~~-------p~k~~--------------------i~~~~~g~C~vh~~~t~e~v~~~~~~~p~a~VvvhpEc~~eV~~~ 211 (310)
T TIGR00550 159 QEQ-------TLKDM--------------------ILWPEQGHCSVHEKFTTEDLERLKEKYPDAEILVHPECEPEVVDL 211 (310)
T ss_pred HhC-------CCCEE--------------------EeCCCCCCCcChhhCCHHHHHHHHHHCCCCeEEECCCCCHHHHHh
Confidence 731 45554 445 9999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccC
Q 013131 239 AMEAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVS 318 (449)
Q Consensus 239 A~~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 318 (449)
| ||+|||++|++||++ .+.++||||||.||+++| |+ .+|+|+||++ .
T Consensus 212 a--------D~vgSTs~~i~~v~~----------~~~~~~ii~TE~~l~~~l----~~----------~~p~k~~i~~-~ 258 (310)
T TIGR00550 212 A--------DFIGSTSQIIRFVLK----------SPAQKFIIGTEVGLVNRM----EA----------ESPDKNTIPL-L 258 (310)
T ss_pred c--------CEEecHHHHHHHHHh----------CCCCeEEEEccHHHHHHH----HH----------HCCCCeEEeC-C
Confidence 9 999999999999998 467999999999999999 44 4788877766 1
Q ss_pred CcccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcc--cccCChHHHHHHHhhCCCCCCeEEeChhhH
Q 013131 319 SDSMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPY--MKMNSLSSLLKVCHQLPHGKNNLKAYEAER 396 (449)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~--MkmntL~~l~~~~~~l~~~~~~i~v~~~~~ 396 (449)
+|..||+ ||+|||++|+++|+.... .++|+|+++.+
T Consensus 259 -----------------------------------------~~~~C~~~~M~~~tl~~v~~~l~~~~~-~~~i~v~~~~~ 296 (310)
T TIGR00550 259 -----------------------------------------NEAICPCCAMNRNTLEKLFEALEQEKN-SNEIKVPEEIA 296 (310)
T ss_pred -----------------------------------------CCCcCCCcchhcCCHHHHHHHHHhCCC-CCeEECCHHHH
Confidence 1247888 999999999998885311 78999999999
Q ss_pred HHHhhhhhhhHHh
Q 013131 397 FKLQTLQGKSIAD 409 (449)
Q Consensus 397 ~~a~~~l~r~~~~ 409 (449)
.+|+.+|+|||+.
T Consensus 297 ~~A~~~l~rMl~~ 309 (310)
T TIGR00550 297 ERALLALNRMLRI 309 (310)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999999864
No 6
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=100.00 E-value=1.4e-43 Score=354.09 Aligned_cols=201 Identities=14% Similarity=0.183 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHHHh
Q 013131 88 AYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQI 167 (449)
Q Consensus 88 ~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~~~ 167 (449)
++++|+++ + ++++|+|+||++|||++| |+||||+|+.+++ ++++.+.|+|+||+|||+|++. +.
T Consensus 9 ~I~~lk~e---~-~~~ivah~y~~~Evk~~a-----D~~gdS~~l~~~a----~~~~~~~IvF~gv~fMae~a~~-l~-- 72 (310)
T TIGR00550 9 AILRLKKE---L-NAVILAHYYQKDEIQQIA-----DYTGDSLELAQIA----AKTDADIIVFCGVHFMGETAKI-LN-- 72 (310)
T ss_pred HHHHHHHH---c-CCEEEEEcCCCHHHHHhh-----cceeeHHHHHHHH----HhCCCCEEEEeCCchHHHHHHH-hC--
Confidence 44444443 5 999999999999999999 8999999999999 6778888999999999997754 32
Q ss_pred hcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCC
Q 013131 168 AMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGM 247 (449)
Q Consensus 168 ~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~ 247 (449)
|+++| ++|. |+|+|++|++|++++|+++|++||||.|++||||++||.++|
T Consensus 73 ---p~k~v--------------ilp~----~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~aeVka~a-------- 123 (310)
T TIGR00550 73 ---PEKTV--------------LMPD----LGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTAEVKALA-------- 123 (310)
T ss_pred ---CCCEE--------------EccC----CCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCHHHHHhC--------
Confidence 44444 3332 999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhhhccCCCC-CCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCCccccccc
Q 013131 248 GVVGSTKNILDFIKERVQEALDRDVDD-HLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSSDSMTKSS 326 (449)
Q Consensus 248 D~VGSTs~II~~v~~~~~~a~~~~~~~-~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (449)
|+||||+|+++++++. ++ +++|||+||.||.+++ + . +|+++|+++
T Consensus 124 D~v~TSsna~~~v~~~---------~~~~~~Iif~pd~~L~~~~----~---~--------~p~k~~i~~---------- 169 (310)
T TIGR00550 124 DIVCTSSNAVKVVEHL---------DKDNKKILFLPDKNLGRYV----Q---E--------QTLKDMILW---------- 169 (310)
T ss_pred CEEEchHHHHHHHHhc---------ccCCCEEEEECchHHHHHH----H---h--------CCCCEEEeC----------
Confidence 9999999999999983 22 4789999999999988 2 2 688777766
Q ss_pred ccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHHhh
Q 013131 327 ISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKLQT 401 (449)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a~~ 401 (449)
+. .| .||+|+++|+++|+++++. +++.+|.+|||++..-+.
T Consensus 170 ----------------------~~--~g--------~C~vh~~~t~e~v~~~~~~--~p~a~VvvhpEc~~eV~~ 210 (310)
T TIGR00550 170 ----------------------PE--QG--------HCSVHEKFTTEDLERLKEK--YPDAEILVHPECEPEVVD 210 (310)
T ss_pred ----------------------CC--CC--------CCcChhhCCHHHHHHHHHH--CCCCeEEECCCCCHHHHH
Confidence 11 24 8999999999999998875 688999999999977543
No 7
>PRK09375 quinolinate synthetase; Provisional
Probab=99.98 E-value=6.8e-32 Score=270.96 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=152.0
Q ss_pred CChhHHHHhhhhhccCCCeeeech-HHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCCh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDS-LVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCS 79 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDS-L~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCs 79 (449)
+.+|||.++| +++|| ++++..+ +..+++.|+||||+||||+++ +| |+ |.|++|+ ++||
T Consensus 130 ssaeVKA~aD---------~~cTSSnAl~iv~---~~~~~~~IlF~PD~~Lg~~v~-~l-~~-----k~vilw~--G~C~ 188 (319)
T PRK09375 130 TSAAVKARAD---------IVCTSSNAVKIVE---ALPQGKKILFLPDQHLGRYVA-KQ-TG-----ADIILWP--GHCI 188 (319)
T ss_pred CCHHHHHhCC---------eEEeCHHHHHHHh---ccCCCCeEEEeCchHHHHHHH-Hc-CC-----CEEEccC--Ccch
Confidence 4789999999 87877 9999877 557899999999999999996 88 43 5568888 9999
Q ss_pred hhCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHH
Q 013131 80 LADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGAN 159 (449)
Q Consensus 80 MAdm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~n 159 (449)
++++++++++++++++ ||++.+|+|.|+++|||+.| |++|||||++++| ++.++++|+|+||.|||.|
T Consensus 189 vH~~~~~e~i~~~r~~---~Pda~Vv~HPEc~~eV~a~A-----D~vgSTs~~i~~v----~~~~~~~~iigTE~~L~~~ 256 (319)
T PRK09375 189 VHEEFTAEDLERLRAE---YPDAKVLVHPECPPEVVALA-----DFVGSTSQIIKAA----KASPAKKFIVGTEIGIVHR 256 (319)
T ss_pred hccCcCHHHHHHHHHH---CcCCeEEEecCCCHHHHHhc-----CEEecHHHHHHHH----HhCCCCeEEEEccHHHHHH
Confidence 9999999999999876 99999999999999999999 8999999999999 6778889999999999999
Q ss_pred HHHHHHHhhcCChhhhhhcCCCCCccchhccccccccccc--cccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHH
Q 013131 160 ITELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQD--GTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFS 237 (449)
Q Consensus 160 va~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~--G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~ 237 (449)
+++.. |+|+ +++|+ |.|++|.+||.++|.+.-+ +..-.|.+ ++|+..
T Consensus 257 l~~~~------P~K~--------------------fi~~~~~~~C~~Mk~~tle~l~~~L~-~~~~~i~v----~~~i~~ 305 (319)
T PRK09375 257 LQKAN------PDKE--------------------FIPARSCAHCPTMKMITLEKLLEALE-EERNEITV----DEEIAE 305 (319)
T ss_pred HHHHC------CCCE--------------------EEECCCCCcCcChhhcCHHHHHHHHh-cCCCeEEc----CHHHHH
Confidence 98863 3444 36677 9999999999999998666 45556766 455666
Q ss_pred HHHHH
Q 013131 238 LAMEA 242 (449)
Q Consensus 238 lA~~~ 242 (449)
.|..+
T Consensus 306 ~A~~~ 310 (319)
T PRK09375 306 KARLA 310 (319)
T ss_pred HHHHH
Confidence 66433
No 8
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=99.90 E-value=5.9e-23 Score=205.13 Aligned_cols=215 Identities=11% Similarity=0.104 Sum_probs=177.8
Q ss_pred HHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHHHhhcCCh
Q 013131 93 LEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQIAMMSD 172 (449)
Q Consensus 93 ~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~~~~~~~d 172 (449)
.+++++..|++++++.|+..||+.+||++ ||+.-. |.+.. +.+.+.|+|++..|||+ +|+.|+ |+
T Consensus 27 I~~Lk~e~navILAH~Yq~peIq~iAD~v-GDSL~L---Ar~A~-----~~~Ad~IVf~GV~FMaE-TAkiLn-----Pe 91 (324)
T COG0379 27 IKRLKKERNAVILAHNYQRPEIQDIADFV-GDSLEL---AREAA-----KTDADTIVFAGVHFMAE-TAKILN-----PE 91 (324)
T ss_pred HHHHHHhcCcEEEEecCCCHHHHHHHHhh-ccHHHH---HHHHh-----hCCCCEEEEeceeehHh-hHhhcC-----CC
Confidence 33455567999999999999999999999 998888 55443 35688999999999999 999987 77
Q ss_pred hhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccccC
Q 013131 173 EEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVVGS 252 (449)
Q Consensus 173 k~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~VGS 252 (449)
|+| |+|.. ...|++.++.+++++.++|++|||+.|++|-+|+.||++.+ |++++
T Consensus 92 K~V--------------L~Pd~----~AgCsmA~~~~~~~~~~~~~~~P~~~vV~YvNtsA~vKA~~--------Di~cT 145 (324)
T COG0379 92 KTV--------------LLPDL----EAGCSMADMITAEEVRAFKEKHPDAPVVTYVNTSAEVKAEA--------DICCT 145 (324)
T ss_pred CeE--------------ecCCC----CCCCCcccCCCHHHHHHHHHHCCCCceEEEeeChHHHHhhc--------CeEEe
Confidence 776 67763 78999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCCcccccccccCCcc
Q 013131 253 TKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSSDSMTKSSISSSSN 332 (449)
Q Consensus 253 Ts~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (449)
+||..+.|+.. .+++++|+++|.+|..++ |+.. +
T Consensus 146 SsNAvkvVe~~---------~~~~~Iif~PD~~Lg~yv----a~~t----------g----------------------- 179 (324)
T COG0379 146 SSNAVKVVESA---------LDGDKILFLPDKNLGRYV----AKQT----------G----------------------- 179 (324)
T ss_pred cchHHHHHHhc---------cCCCcEEEcCcHHHHHHH----HHHc----------C-----------------------
Confidence 99999999872 578999999999999988 4421 1
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHHhhhhhhhHHhhcC
Q 013131 333 LKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKLQTLQGKSIADVGC 412 (449)
Q Consensus 333 ~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a~~~l~r~~~~~~~ 412 (449)
.|.+|+++ | +|++|+++|.++|.+..+. +++.+|.+|||++..-.. +++.-.
T Consensus 180 ---------~k~ii~w~----G--------~C~VH~~ft~~~i~~~k~~--~Pda~vlvHPEC~~~Vv~-----~AD~vG 231 (324)
T COG0379 180 ---------AKKIILWP----G--------HCIVHEEFTAEDIEELKEK--YPDAEVLVHPECPPEVVE-----LADFVG 231 (324)
T ss_pred ---------CCcEEEEC----C--------ccchhhhcCHHHHHHHHHH--CCCCEEEECCCCCHHHHH-----hccccc
Confidence 25778886 6 8999999999999987765 899999999999875321 111111
Q ss_pred cchHHHHhHHH
Q 013131 413 EPILHMRHFQA 423 (449)
Q Consensus 413 ~pi~~M~~f~~ 423 (449)
.=.-|+++.+
T Consensus 232 -ST~~ii~~~~ 241 (324)
T COG0379 232 -STSQIIKAVK 241 (324)
T ss_pred -cHHHHHHHHh
Confidence 4556666666
No 9
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=99.89 E-value=7.1e-23 Score=203.74 Aligned_cols=218 Identities=11% Similarity=0.144 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHHH
Q 013131 87 PAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQ 166 (449)
Q Consensus 87 e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~~ 166 (449)
++++++++ ..+++++++.|+..||+.+||++ ||+.-. |.+.. +.+.+.|+|+...|||+ +|+.|+
T Consensus 2 ~~I~~LKk----ek~avILAH~Yq~~eIq~iAD~v-GDSl~L---a~~A~-----~~~a~~IVfcGV~FMAE-tAkIL~- 66 (296)
T PF02445_consen 2 EEILRLKK----EKNAVILAHNYQRPEIQDIADFV-GDSLEL---ARKAA-----ETDADIIVFCGVHFMAE-TAKILN- 66 (296)
T ss_dssp HHHHHHHH----HHTEEEEEETTS-HHHHHH-SEE-E-HHHH---HHHCT-----T-SSSEEEEES-HHHHH-HHHHH--
T ss_pred hHHHHHHH----hcCCEEEEecCCCHHHHHHHHHh-CCHHHH---HHHHH-----hCCCCEEEEecceehHh-hHHhhC-
Confidence 56666666 47999999999999999999988 888877 44432 35678899999999999 889886
Q ss_pred hhcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcC
Q 013131 167 IAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRG 246 (449)
Q Consensus 167 ~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~ 246 (449)
|++.| ++|. ....||+.++.++++++++|++|||+.|+.|.+|+.||.+.+
T Consensus 67 ----P~K~V--------------llPd----~~AgC~MAdm~~~~~v~~~k~~~p~~~vV~YVNssAevKA~s------- 117 (296)
T PF02445_consen 67 ----PDKKV--------------LLPD----PEAGCPMADMATAEDVRELKEEYPDAAVVTYVNSSAEVKAES------- 117 (296)
T ss_dssp ----TTSEE--------------E-SS------------TT--HHHHHHHHHHSTTS-EEEESSS-HHHHTT--------
T ss_pred ----CCCEE--------------EecC----CCCCCchhhhCCHHHHHHHHHHCCCCeEEEEecChHHHHccC-------
Confidence 67776 6665 379999999999999999999999999999999999999999
Q ss_pred CccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCCccccccc
Q 013131 247 MGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSSDSMTKSS 326 (449)
Q Consensus 247 ~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (449)
|+++++||..+.++.. +.++++++++|.||..++.++. +
T Consensus 118 -di~cTSsNA~kIv~~l---------~~~~~IlF~PD~nLG~~v~~~~---------------~---------------- 156 (296)
T PF02445_consen 118 -DICCTSSNAVKIVRSL---------PQDKKILFLPDKNLGRYVARQT---------------G---------------- 156 (296)
T ss_dssp -SEEE-TTTHHHHHHCS---------S-SE-EEEES-HHHHHHHHHHH--------------------------------
T ss_pred -CeEEECccHHHHHHHh---------cCCCeEEEcCcHHHHHHHHHhh---------------C----------------
Confidence 9999999999999872 4445599999999999992222 3
Q ss_pred ccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHHhhhhhhh
Q 013131 327 ISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKLQTLQGKS 406 (449)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a~~~l~r~ 406 (449)
+.+|++| | +||.|.+++.++|....+. +++..|.+|||++..-...-
T Consensus 157 ----------------k~ii~w~----G--------~C~VH~~f~~~~i~~~r~~--~P~a~vlvHPEC~~ev~~~A--- 203 (296)
T PF02445_consen 157 ----------------KNIILWP----G--------YCPVHERFTPEDIEKAREK--HPDAKVLVHPECPPEVVELA--- 203 (296)
T ss_dssp -----------------EEEESS----S--------S--TGGG--HHHHHHHHCC--STTSEEEE-TTS-HHHHCT----
T ss_pred ----------------CeEEEEC----C--------CcccccccCHHHHHHHHHH--CcCCEEEECCCCCHHHHHHh---
Confidence 4566664 6 8999999999999998664 78999999999987754311
Q ss_pred HHhhcCcchHHHHhHHHhc
Q 013131 407 IADVGCEPILHMRHFQAKK 425 (449)
Q Consensus 407 ~~~~~~~pi~~M~~f~~~~ 425 (449)
+ ..-.=..|++|.++.
T Consensus 204 --D-~vGSTs~ii~~v~~~ 219 (296)
T PF02445_consen 204 --D-FVGSTSGIIKYVKES 219 (296)
T ss_dssp --S-EE--HHHHHHHCCG-
T ss_pred --h-hcCCHHHHHHHHHhC
Confidence 1 344566788887754
No 10
>PLN02673 quinolinate synthetase A
Probab=99.73 E-value=6.6e-17 Score=174.63 Aligned_cols=268 Identities=12% Similarity=0.029 Sum_probs=185.0
Q ss_pred HHHHHHHHHhcCCCceEEEeeCCCHHHHhhhc---------CCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHH
Q 013131 88 AYMNYLEAASTNPPSLHVIYINTSLETKAYAH---------ELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGA 158 (449)
Q Consensus 88 ~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad---------~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~ 158 (449)
.++++++ +++..++++|++.|+..||+.++| ++ ||+...|--|.+.. +.+.+.|+|+...||++
T Consensus 258 ~v~eI~~-lkkek~avILAH~Yq~pEVQ~iADa~~~~~p~~~v-GDSL~LA~~A~~~~-----~~~a~~IVFcGV~FMAE 330 (724)
T PLN02673 258 KVEELVN-VLKEKKIGVVAHFYMDPEVQGVLTAAQKHWPHISI-SDSLIMADSAVKMA-----KAGCQFITVLGVDFMSE 330 (724)
T ss_pred HHHHHHH-HHHhcCcEEEEecCCCHHHHHHhhhhhcccCCCee-ccHHHHHHHHHHhc-----cCCCCEEEEeceeeHHh
Confidence 3444443 334689999999999999999999 66 89999955554433 35678899999999999
Q ss_pred HHHHHHHHhhcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHH---CCCceEEEecCCcHHH
Q 013131 159 NITELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEM---YCDAFLTAHLEVPGEM 235 (449)
Q Consensus 159 nva~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~---yPdA~VlvHPEC~~EV 235 (449)
+..+.|+.. +..++.|+ ++|. .+..|++.++.+.+++++++++ ||++.+|+|-+|+.||
T Consensus 331 tA~kIL~p~-~~~~k~V~-------------llPd----~~AGCsMAdma~~~~~~~~~~~~~~~p~~~vV~YINTSAev 392 (724)
T PLN02673 331 NVRAILDQA-GFGEVGVY-------------RMSN----ERIGCSLADAASTPAYMNYLEAASASPPSLHVVYINTSLET 392 (724)
T ss_pred hHHHhcCCC-ccCCceEE-------------eCCC----CCCCCChhhcCCHHHHHHHHHHHhhCCCCceEEEecCcHHH
Confidence 554776510 00012220 2443 4789999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhcCC--ccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEE
Q 013131 236 FSLAMEAKKRGM--GVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEI 313 (449)
Q Consensus 236 ~~lA~~~~~~~~--D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~ 313 (449)
++.+ ... |+++++||.++.|+.. .+. .+.+++++++|.+|..++++.++++.. -++++|
T Consensus 393 KA~a-----g~~~gdi~CTSSNAvkiV~~A----~~~--~p~~~IlF~PD~nLG~nva~~~~~~~~--------~~~~~i 453 (724)
T PLN02673 393 KAYA-----HELVPTITCTSSNVVQTILQA----FAQ--MPELNIWYGPDSYMGANIVKLFQQMTL--------MTDEEI 453 (724)
T ss_pred Hhhc-----cCCCCCeEEeCccHHHHHHHH----Hhh--CCCCeEEEeCchHHHHHHHHHhhhccC--------CCHHHh
Confidence 9998 233 7999999999999721 100 345689999999999999877765422 344444
Q ss_pred EcccCCcccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeCh
Q 013131 314 VFPVSSDSMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYE 393 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~ 393 (449)
... .+. -+..+. .. +.+ ..++.+ +| +|++|.|++.+++..+.+. +++..|.+||
T Consensus 454 ~~~-~p~-----~~~~t~--~~--~~~--~~~ilw----~G--------~C~VH~~F~~e~v~~~r~~--yPdA~v~aHP 507 (724)
T PLN02673 454 ANI-HPK-----HNLDSI--KS--LLP--RLHYYQ----DG--------TCIVHHLFGHEVVEKINYM--YCDAFLTAHL 507 (724)
T ss_pred eec-ccc-----ccccch--hh--ccc--cceecc----CC--------cchhccCcCHHHHHHHHHH--CCCCEEEECC
Confidence 221 100 000000 00 000 112233 47 8999999999999998775 8999999999
Q ss_pred hhHHHHhhhhh-hhHHh-hcCcchHHHHhHHHhc
Q 013131 394 AERFKLQTLQG-KSIAD-VGCEPILHMRHFQAKK 425 (449)
Q Consensus 394 ~~~~~a~~~l~-r~~~~-~~~~pi~~M~~f~~~~ 425 (449)
|++..-...-+ .-+.. -..-.=..|++|.++.
T Consensus 508 EC~~EV~~lAD~~~~~~~d~VGSTs~Ii~~v~~~ 541 (724)
T PLN02673 508 EVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKQR 541 (724)
T ss_pred CCCHHHHHHhhhhccccCCEEECHHHHHHHHHHh
Confidence 99976422110 00111 1345678899999873
No 11
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=57.88 E-value=1e+02 Score=33.61 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHHHh
Q 013131 88 AYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQI 167 (449)
Q Consensus 88 ~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~~~ 167 (449)
.++.|++.|-+-.+..-|--++...=++=++--- =+--|-|-|..+.|+. + -++.++|+|.------.+|....
T Consensus 69 kl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG-~gfdcaSk~E~~lvl~-~-gv~P~riIyanpcK~~s~IkyAa--- 142 (448)
T KOG0622|consen 69 KLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLG-CGFDCASKNELDLVLS-L-GVSPERIIYANPCKQVSQIKYAA--- 142 (448)
T ss_pred HHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcC-ccceecChHHHHHHHh-c-CCChHHeEecCCCccHHHHHHHH---
Confidence 3455665554433344555555555566555433 2678999999998854 2 35667888874432222233221
Q ss_pred hcCChhhhhhcCCCCCccchhccccccccccccccccccCCCHHHHHHHHHHCCCceEEEecCCcH
Q 013131 168 AMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPG 233 (449)
Q Consensus 168 ~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~ 233 (449)
+-.|.+-.-=..+++.++++.||+|++|.+--++.
T Consensus 143 -------------------------------~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdd 177 (448)
T KOG0622|consen 143 -------------------------------KHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDD 177 (448)
T ss_pred -------------------------------HcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCC
Confidence 11122222226788999999999999999876543
No 12
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=56.64 E-value=1.7e+02 Score=29.12 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=20.8
Q ss_pred CCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcc
Q 013131 274 DHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFP 316 (449)
Q Consensus 274 ~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~ 316 (449)
....++||.|.|.+| |+.++ ..|-+-+|-|
T Consensus 250 ~~a~l~I~~DSGp~H-lAaA~------------~~P~i~lfG~ 279 (334)
T TIGR02195 250 ALAKAVVTNDSGLMH-VAAAL------------NRPLVALYGS 279 (334)
T ss_pred HhCCEEEeeCCHHHH-HHHHc------------CCCEEEEECC
Confidence 357799999999999 42222 3566666666
No 13
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=50.92 E-value=1.8e+02 Score=29.18 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=13.2
Q ss_pred CCCeEEEEeCchhHH
Q 013131 274 DHLQFVLGTESGMLT 288 (449)
Q Consensus 274 ~~~~fIIGTE~Glv~ 288 (449)
....++||.|.|.+|
T Consensus 259 ~~a~l~Vs~DSGp~H 273 (344)
T TIGR02201 259 DHARLFIGVDSVPMH 273 (344)
T ss_pred HhCCEEEecCCHHHH
Confidence 357799999999999
No 14
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=46.14 E-value=1.6e+02 Score=29.81 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcc
Q 013131 274 DHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFP 316 (449)
Q Consensus 274 ~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~ 316 (449)
....++||.|.|.+| |+.++ ..|-+-||=|
T Consensus 260 ~~a~l~I~nDTGp~H-lAaA~------------g~P~valfGp 289 (348)
T PRK10916 260 AACKAIVTNDSGLMH-VAAAL------------NRPLVALYGP 289 (348)
T ss_pred HhCCEEEecCChHHH-HHHHh------------CCCEEEEECC
Confidence 457799999999999 42222 3566666665
No 15
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=44.15 E-value=71 Score=29.49 Aligned_cols=56 Identities=25% Similarity=0.221 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccccC--------hHHHHHHHHH
Q 013131 207 LFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVVGS--------TKNILDFIKE 262 (449)
Q Consensus 207 ~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~VGS--------Ts~II~~v~~ 262 (449)
.++.+.++.+|+.+|+..+.+|--....-...+..+.+.|.|++-. ...+++++++
T Consensus 38 ~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~ 101 (202)
T cd04726 38 SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK 101 (202)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH
Confidence 4568999999999999999998554322112223345677887762 2456777765
No 16
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.81 E-value=1.1e+02 Score=28.59 Aligned_cols=54 Identities=28% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHCCCceEEEec--CCcHHHHHHHHHHhhcCCccc----cCh----HHHHHHHHH
Q 013131 207 LFGHEVVEKINEMYCDAFLTAHL--EVPGEMFSLAMEAKKRGMGVV----GST----KNILDFIKE 262 (449)
Q Consensus 207 ~ft~e~V~~~r~~yPdA~VlvHP--EC~~EV~~lA~~~~~~~~D~V----GST----s~II~~v~~ 262 (449)
.|+.+.|+.+|+.||+..+.+|- --+... .+.++...|.|++ .++ ..+++++++
T Consensus 37 ~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~ 100 (206)
T TIGR03128 37 NEGIEAVKEMKEAFPDRKVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVADDATIKGAVKAAKK 100 (206)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH
Confidence 36789999999999988887654 222222 2333456788988 332 567777776
No 17
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.66 E-value=3.7e+02 Score=25.99 Aligned_cols=78 Identities=9% Similarity=-0.004 Sum_probs=39.3
Q ss_pred eeechHHHHHHHHHHhh--cCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChhhCCCChHHHHHHHHHHh
Q 013131 20 YISDSLVMADTAVKMAK--AGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSLADAAATPAYMNYLEAAS 97 (449)
Q Consensus 20 ~vGDSL~LA~~A~~a~~--~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsMAdm~~~e~v~~~~~~~~ 97 (449)
-+||-+...-..+..++ -++++-+++.-. .++ ++...++-+ +++.++..+ -.-...++.+++++++
T Consensus 9 ~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~-~~~----l~~~~p~id-~v~~~~~~~------~~~~~~~~~~~~~~l~ 76 (279)
T cd03789 9 WIGDVVLATPLLRALKARYPDARITVLAPPW-FAP----LLELMPEVD-RVIVLPKKH------GKLGLGARRRLARALR 76 (279)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCEEEEEEChh-hHH----HHhcCCccC-EEEEcCCcc------cccchHHHHHHHHHHh
Confidence 67888877665544454 347777777753 233 433321122 333333222 1122344555555555
Q ss_pred c-CCCceEEEeeC
Q 013131 98 T-NPPSLHVIYIN 109 (449)
Q Consensus 98 ~-~p~~~vV~YIN 109 (449)
+ +.|.+...+-+
T Consensus 77 ~~~~D~vi~~~~~ 89 (279)
T cd03789 77 RRRYDLAIDLQGS 89 (279)
T ss_pred hcCCCEEEECCCc
Confidence 4 46766555444
No 18
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=37.68 E-value=2.7e+02 Score=29.84 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=54.3
Q ss_pred CEEEcChhHHHHHHHHHhcC--CCCcEEEecCcchHHHHHHHHHHhhcCChhhhhhcCCCCCccchhccccccccccccc
Q 013131 124 TITCTSSNVVQTILQAFAQI--PDLNIWYGPDSYMGANITELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGT 201 (449)
Q Consensus 124 Di~CTSSNAvkiV~~a~~~~--p~~~IlF~PD~~LG~nva~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~ 201 (449)
++...++..--.++-++.++ |+++||.+-----|+..++...+. +. ++.. + -..|.
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~-g~---~v~~------------~----~~~wg-- 114 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERY-GA---EVVV------------L----EVEWG-- 114 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHh-CC---ceEE------------E----eCCCC--
Confidence 44444333443445445555 689999999998888887776432 11 1111 1 01243
Q ss_pred cccccCCCHHHHHHHHHHCCCc--eEEEecCCcH
Q 013131 202 CIVHHLFGHEVVEKINEMYCDA--FLTAHLEVPG 233 (449)
Q Consensus 202 C~VH~~ft~e~V~~~r~~yPdA--~VlvHPEC~~ 233 (449)
..|++++|++.-+++|++ -.++|-||+-
T Consensus 115 ----~~v~p~~v~~~L~~~~~~~~V~~vH~ETST 144 (383)
T COG0075 115 ----EAVDPEEVEEALDKDPDIKAVAVVHNETST 144 (383)
T ss_pred ----CCCCHHHHHHHHhcCCCccEEEEEeccCcc
Confidence 679999999999999876 4578999974
No 19
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=36.99 E-value=2.4e+02 Score=29.69 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=47.2
Q ss_pred CCh-hhCCCChHHHHHHHHHHhcCCCceEEEeeCCCHH---------HHhhhcCCCCC----EEEcChhHHHHHHHHHhc
Q 013131 77 GCS-LADAAATPAYMNYLEAASTNPPSLHVIYINTSLE---------TKAYAHELVPT----ITCTSSNVVQTILQAFAQ 142 (449)
Q Consensus 77 gCs-MAdm~~~e~v~~~~~~~~~~p~~~vV~YINSSAe---------VKA~ad~~vGD----i~CTSSNAvkiV~~a~~~ 142 (449)
+|- ..|+.+.++.-++.+++ -|++--|++++++-| +|..+... |= .-+||+|=+.-..++
T Consensus 135 NvTGvsD~~~v~q~i~lik~~--~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~-Gl~vve~~v~~~ndi~~a~~~--- 208 (322)
T COG2984 135 NVTGVSDLLPVAQQIELIKAL--LPNAKSIGVLYNPGEANSVSLVEELKKEARKA-GLEVVEAAVTSVNDIPRAVQA--- 208 (322)
T ss_pred ceeecCCcchHHHHHHHHHHh--CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHC-CCEEEEEecCcccccHHHHHH---
Confidence 443 45677777666555543 688887766666554 77777665 32 334566655555443
Q ss_pred CCCC-cEEEecCcchHHH
Q 013131 143 IPDL-NIWYGPDSYMGAN 159 (449)
Q Consensus 143 ~p~~-~IlF~PD~~LG~n 159 (449)
+.++ .++|+|..|+=..
T Consensus 209 l~g~~d~i~~p~dn~i~s 226 (322)
T COG2984 209 LLGKVDVIYIPTDNLIVS 226 (322)
T ss_pred hcCCCcEEEEecchHHHH
Confidence 3333 4999999976443
No 20
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=35.43 E-value=4.5e+02 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=14.9
Q ss_pred CcccccCChHHHHHHHhhC
Q 013131 364 CPYMKMNSLSSLLKVCHQL 382 (449)
Q Consensus 364 Cp~MkmntL~~l~~~~~~l 382 (449)
|.-|..++.+.|.+.++.+
T Consensus 324 ~~Cm~~I~~~~V~~~~~~l 342 (352)
T PRK10422 324 EKYLSVIPAADVIAAVDKL 342 (352)
T ss_pred ccHhhcCCHHHHHHHHHHH
Confidence 4558899999998877654
No 21
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=32.46 E-value=1.2e+02 Score=34.21 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHH
Q 013131 86 TPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 86 ~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~ 165 (449)
.|++..+++ ..+.++|+||+..-+... .|..++....=+-+++.|++.+=.++-+.+.
T Consensus 71 ~DQV~~l~~------~Gi~A~~lnS~l~~~e~~----------------~v~~~l~~g~~klLyisPErl~~~~f~~~L~ 128 (590)
T COG0514 71 KDQVDQLEA------AGIRAAYLNSTLSREERQ----------------QVLNQLKSGQLKLLYISPERLMSPRFLELLK 128 (590)
T ss_pred HHHHHHHHH------cCceeehhhcccCHHHHH----------------HHHHHHhcCceeEEEECchhhcChHHHHHHH
Confidence 566665554 348999999997666555 2333334321233556788877776666553
Q ss_pred HhhcCChhhhhhcCCCCCccchhccccccccccccccccc--cCCCHHH--HHHHHHHCCCceEEE-----ecCCcHHHH
Q 013131 166 QIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQDGTCIVH--HLFGHEV--VEKINEMYCDAFLTA-----HLEVPGEMF 236 (449)
Q Consensus 166 ~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~G~C~VH--~~ft~e~--V~~~r~~yPdA~Vlv-----HPEC~~EV~ 236 (449)
+. ++ ..+..-..+|... |.|.|+- +-.+++.||++.+++ +|.+..++.
T Consensus 129 ~~------~i-----------------~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~ 185 (590)
T COG0514 129 RL------PI-----------------SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIR 185 (590)
T ss_pred hC------CC-----------------ceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHH
Confidence 11 11 1134568999988 4699985 677999999998865 577777766
Q ss_pred HHHHHHhhcCCccccCh--HHHHHHHHHHH----h-hhhc--cCCCCCCeEEEEeCchhHHHHHHHHHH
Q 013131 237 SLAMEAKKRGMGVVGST--KNILDFIKERV----Q-EALD--RDVDDHLQFVLGTESGMLTSIVAAVCN 296 (449)
Q Consensus 237 ~lA~~~~~~~~D~VGST--s~II~~v~~~~----~-~a~~--~~~~~~~~fIIGTE~Glv~~l~~~~q~ 296 (449)
+.=- . +...=|++|. .||.-.+.... + .-+. .....+.-+|-+.-.-.+.++++.+++
T Consensus 186 ~~L~-l-~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~ 252 (590)
T COG0514 186 EQLG-L-QDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRK 252 (590)
T ss_pred HHhc-C-CCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHH
Confidence 5430 0 0101244553 23322222200 0 0000 011334457777777777788666665
No 22
>PLN02757 sirohydrochlorine ferrochelatase
Probab=32.23 E-value=1.1e+02 Score=28.45 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccccChHHHHHHHHHHHhhhhccC
Q 013131 210 HEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVVGSTKNILDFIKERVQEALDRD 271 (449)
Q Consensus 210 ~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~ 271 (449)
++.+++++++||+..|++ + ...|....|++.+.+.+++|....
T Consensus 93 p~~v~~~~~~~p~~~i~~-----------~--------~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 93 PALTAEAAKEHPGVKYLV-----------T--------APIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHHCCCcEEEE-----------C--------CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 678999999999988774 3 578888999999998888888663
No 23
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=1.4e+02 Score=28.65 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=44.4
Q ss_pred chhcHHHhcCCCCCCccceeeeCCCCC---CChhhCCCChHHHHHHHHHHhcC-CCceEEEeeCCCHHHHhhhcCCCCCE
Q 013131 50 MSENVRAILDQAGFQDVGVYRMSGERI---GCSLADAAATPAYMNYLEAASTN-PPSLHVIYINTSLETKAYAHELVPTI 125 (449)
Q Consensus 50 MAEtAkaIL~p~~~~~~kvvllPd~~A---gCsMAdm~~~e~v~~~~~~~~~~-p~~~vV~YINSSAeVKA~ad~~vGDi 125 (449)
-.+|.+ -|-. .+||||..-+.| .||..+--. |.++.++++++ =|.+.+.-||-.=-.+|++
T Consensus 27 ~~~ts~-~lf~----gKkVvlf~lPGAFTPTCS~~hlPg---Y~~~~d~f~~kGVD~I~cVSVND~FVm~AWa------- 91 (165)
T COG0678 27 VDVTTD-DLFK----GKKVVLFSLPGAFTPTCSSSHLPG---YLELADEFKAKGVDEIYCVSVNDAFVMNAWA------- 91 (165)
T ss_pred ccccHH-HhcC----CCEEEEEeCCCccCCCcccccCcc---HHHHHHHHHHcCCceEEEEEeCcHHHHHHHH-------
Confidence 345664 4443 367777666555 788765322 33333433333 3344444555443333333
Q ss_pred EEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHH
Q 013131 126 TCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITE 162 (449)
Q Consensus 126 ~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~ 162 (449)
-.+.-+++|.|+||-+ |+++..
T Consensus 92 --------------k~~g~~~~I~fi~Dg~-geFTk~ 113 (165)
T COG0678 92 --------------KSQGGEGNIKFIPDGN-GEFTKA 113 (165)
T ss_pred --------------HhcCCCccEEEecCCC-chhhhh
Confidence 3333344999999986 666643
No 24
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=28.60 E-value=94 Score=29.03 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=14.5
Q ss_pred CEEEcChhHHHHHHHHHh
Q 013131 124 TITCTSSNVVQTILQAFA 141 (449)
Q Consensus 124 Di~CTSSNAvkiV~~a~~ 141 (449)
.+++||.||++.+...++
T Consensus 45 ~viftS~~av~~~~~~l~ 62 (231)
T PF02602_consen 45 WVIFTSPNAVRAFFKALQ 62 (231)
T ss_dssp EEEESSHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHh
Confidence 689999999999765443
No 25
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=26.70 E-value=2.4e+02 Score=26.40 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccc---cChHHHHHHHHHHHhhhhccCCCCCCeEEEEeC
Q 013131 209 GHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVV---GSTKNILDFIKERVQEALDRDVDDHLQFVLGTE 283 (449)
Q Consensus 209 t~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~V---GSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE 283 (449)
..+.++.++++||++.|-+..=...+=++.| ..-|.|++ |+...++++.+. -+..+++|-.
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a---~~~Ga~~i~~p~~~~~~~~~~~~-----------~~~~~i~gv~ 105 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAA---IAAGAQFIVSPGLDPEVVKAANR-----------AGIPLLPGVA 105 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHH---HHcCCCEEEcCCCCHHHHHHHHH-----------cCCcEECCcC
Confidence 5568999999999988887776655444443 45677888 777778888776 2456777655
No 26
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=26.66 E-value=3.7e+02 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcc
Q 013131 274 DHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFP 316 (449)
Q Consensus 274 ~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~ 316 (449)
....++||.|.|..| |+.++ ..|-+-||-|
T Consensus 252 ~~a~l~I~nDSGp~H-lA~A~------------g~p~valfGp 281 (322)
T PRK10964 252 AGAKAVVSVDTGLSH-LTAAL------------DRPNITLYGP 281 (322)
T ss_pred HhCCEEEecCCcHHH-HHHHh------------CCCEEEEECC
Confidence 457799999999999 42222 4677777777
No 27
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=26.06 E-value=93 Score=30.84 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeCCCHHHHhh----------------hcCC---CCCEEEcChhHHHHHHHHHhcC--C
Q 013131 86 TPAYMNYLEAASTNPPSLHVIYINTSLETKAY----------------AHEL---VPTITCTSSNVVQTILQAFAQI--P 144 (449)
Q Consensus 86 ~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~----------------ad~~---vGDi~CTSSNAvkiV~~a~~~~--p 144 (449)
+|.+.++++++ --.+. .||+||-.|||. +|+. .|.=..++|-+ +|+ ..+ |
T Consensus 106 pDav~~ik~wk---~~g~~-vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~-kIa----~~iGl~ 176 (229)
T COG4229 106 PDAVQAIKRWK---ALGMR-VYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYA-KIA----GDIGLP 176 (229)
T ss_pred HhHHHHHHHHH---HcCCc-EEEEcCCCchhHHHhhcccccccHHhhhcceeeccccccccchhHH-HHH----HhcCCC
Confidence 44555444432 12333 499999999993 4333 11223344444 466 344 6
Q ss_pred CCcEEEecCcchHHHHHHHHHHhh
Q 013131 145 DLNIWYGPDSYMGANITELFQQIA 168 (449)
Q Consensus 145 ~~~IlF~PD~~LG~nva~~l~~~~ 168 (449)
...|||+-|.-.-=+-|+..|-.|
T Consensus 177 p~eilFLSDn~~EL~AA~~vGl~t 200 (229)
T COG4229 177 PAEILFLSDNPEELKAAAGVGLAT 200 (229)
T ss_pred chheEEecCCHHHHHHHHhcchhe
Confidence 678999999755555555555333
No 28
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.97 E-value=5.3e+02 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=20.6
Q ss_pred cccccccCCCHHHH------HHHHHHCCCceEEE
Q 013131 200 GTCIVHHLFGHEVV------EKINEMYCDAFLTA 227 (449)
Q Consensus 200 G~C~VH~~ft~e~V------~~~r~~yPdA~Vlv 227 (449)
.+|.|-+.=..+.+ .++|+++|+++|+|
T Consensus 45 NTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv 78 (418)
T PRK14336 45 NSCVVREHAENKVINRLHLLRKLKNKNPKLKIAL 78 (418)
T ss_pred ecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 78999876555544 55577889998887
No 29
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=25.78 E-value=50 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHCCCceEEEecCCcH
Q 013131 207 LFGHEVVEKINEMYCDAFLTAHLEVPG 233 (449)
Q Consensus 207 ~ft~e~V~~~r~~yPdA~VlvHPEC~~ 233 (449)
.+..|-.+++...|||+.|.|.+=+..
T Consensus 8 AL~~EL~kRl~~~yPd~~v~Vr~~s~~ 34 (65)
T PF06183_consen 8 ALESELTKRLHRQYPDAEVRVRPGSAN 34 (65)
T ss_dssp HHHHHHHHHHHHH-SS-EEEEEEESS-
T ss_pred HHHHHHHHHHHHHCCCceEeeeecccC
Confidence 356788899999999999999987653
No 30
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.37 E-value=62 Score=35.37 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=33.9
Q ss_pred cCCCHHHHHHHHHHCCCceEEE-ecCCcHHHHHHHHHHhhcCCcccc
Q 013131 206 HLFGHEVVEKINEMYCDAFLTA-HLEVPGEMFSLAMEAKKRGMGVVG 251 (449)
Q Consensus 206 ~~ft~e~V~~~r~~yPdA~Vlv-HPEC~~EV~~lA~~~~~~~~D~VG 251 (449)
...-.+.|+++|++|||..|++ .--+..+..++. ..|.|+|+
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~----~aGad~v~ 294 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLV----EAGADIVK 294 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHH----HcCCCEEE
Confidence 5667778999999999999999 777776666665 46889987
No 31
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=24.51 E-value=98 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=23.8
Q ss_pred CCChhhCCCChHHHHHHHHHHhcCCCceEEEeeCCCH
Q 013131 76 IGCSLADAAATPAYMNYLEAASTNPPSLHVIYINTSL 112 (449)
Q Consensus 76 AgCsMAdm~~~e~v~~~~~~~~~~p~~~vV~YINSSA 112 (449)
.+|+..+..=.+-+++.++.+.++|+.+++.|++...
T Consensus 81 ~~~~~~~~~l~d~L~eI~~fL~~nP~EvViL~~e~~~ 117 (267)
T cd08590 81 GVCSSEDRLFEDGLNEIADWLNANPDEVVILYLEDHG 117 (267)
T ss_pred cccccccchHHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 3455444443445555566666799999999997643
No 32
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=23.48 E-value=5.4e+02 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=21.7
Q ss_pred CEEEcChhHHHHHHHHHh--cCCCCcEEEecCcchHHHHHHHHH
Q 013131 124 TITCTSSNVVQTILQAFA--QIPDLNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 124 Di~CTSSNAvkiV~~a~~--~~p~~~IlF~PD~~LG~nva~~l~ 165 (449)
-++.||.||++.+...+. ...+.+|+= .|+-|++.+.
T Consensus 72 ~iiftS~NAV~~~~~~~~~~~~~~~~~~A-----VG~~TA~aL~ 110 (266)
T PRK08811 72 IVVFTSPAAVRAAHRLLPLQRPARAHWLS-----VGEGTARALQ 110 (266)
T ss_pred EEEEECHHHHHHHHHHhcccCccCCeEEE-----ECHHHHHHHH
Confidence 689999999998743221 111222333 3455887765
No 33
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.51 E-value=57 Score=26.11 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=28.0
Q ss_pred hcCCCCCCccceeeeCC---CCCCChhhCCCChHHHHHHHHHHhcC
Q 013131 57 ILDQAGFQDVGVYRMSG---ERIGCSLADAAATPAYMNYLEAASTN 99 (449)
Q Consensus 57 IL~p~~~~~~kvvllPd---~~AgCsMAdm~~~e~v~~~~~~~~~~ 99 (449)
+|...| .+..++|. ..+||-|+-..+.++...+++.++++
T Consensus 20 ~lk~~g---i~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~ 62 (73)
T PF11823_consen 20 LLKKNG---IPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEEN 62 (73)
T ss_pred HHHHCC---CcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHC
Confidence 555543 23335554 57899999999988888877776654
No 34
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=22.27 E-value=6.1e+02 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=26.1
Q ss_pred cccccccCCCHHHH------HHHHHHCCCceEEE---ecCCcHHH
Q 013131 200 GTCIVHHLFGHEVV------EKINEMYCDAFLTA---HLEVPGEM 235 (449)
Q Consensus 200 G~C~VH~~ft~e~V------~~~r~~yPdA~Vlv---HPEC~~EV 235 (449)
-+|.|.+.-..+.+ .++|+++|+++|++ |++-.+|-
T Consensus 44 NTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC~a~~~~~~ 88 (438)
T TIGR01574 44 NTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGCMASHLGNE 88 (438)
T ss_pred eccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCccccccHHH
Confidence 68999887766643 44577889998876 77765553
No 35
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=22.05 E-value=2.5e+02 Score=30.62 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHCCCceEEE---ecCCcHHHHHHHHHHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCch
Q 013131 209 GHEVVEKINEMYCDAFLTA---HLEVPGEMFSLAMEAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESG 285 (449)
Q Consensus 209 t~e~V~~~r~~yPdA~Vlv---HPEC~~EV~~lA~~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~G 285 (449)
-.+..++++++|||+.+|. |||=-++|.+++- +.| ++|.+.+. . +.+ ....+++||-..|
T Consensus 247 ~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~---~~g----------l~~~~rS~-~--~~~-~~~tdV~l~DtmG 309 (419)
T COG1519 247 ILDAHQALKKQFPNLLLILVPRHPERFKAVENLLK---RKG----------LSVTRRSQ-G--DPP-FSDTDVLLGDTMG 309 (419)
T ss_pred HHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHH---HcC----------CeEEeecC-C--CCC-CCCCcEEEEecHh
Confidence 3455778899999999887 8888888888882 111 22333210 0 000 2345788888777
Q ss_pred hHHHH
Q 013131 286 MLTSI 290 (449)
Q Consensus 286 lv~~l 290 (449)
-+.-+
T Consensus 310 EL~l~ 314 (419)
T COG1519 310 ELGLL 314 (419)
T ss_pred HHHHH
Confidence 66544
No 36
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=21.64 E-value=93 Score=26.81 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=26.1
Q ss_pred eCCCCCCChhhCCCChHHHHHHHHHHhc-CCC
Q 013131 71 MSGERIGCSLADAAATPAYMNYLEAAST-NPP 101 (449)
Q Consensus 71 lPd~~AgCsMAdm~~~e~v~~~~~~~~~-~p~ 101 (449)
+|-....||++..+.-..++++++.+++ +|+
T Consensus 24 lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~ 55 (104)
T TIGR00269 24 LKVHLDECPYSSLSVRARIRDFLYDLENKKPG 55 (104)
T ss_pred CCcCCCCCCCCCCCchHHHHHHHHHHHHHCcC
Confidence 5666788999999999999999998877 455
No 37
>COG2045 Phosphosulfolactate phosphohydrolase and related enzymes [Coenzyme metabolism / General function prediction only]
Probab=21.63 E-value=2.2e+02 Score=28.68 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=41.3
Q ss_pred eeCCCHHHH--hhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHH
Q 013131 107 YINTSLETK--AYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 107 YINSSAeVK--A~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~ 165 (449)
|=||.+|+. .+.|.. ++-||.|-..++ .+..+..||++-=.|+.. +++++.
T Consensus 77 ~gNSP~e~~~~~~~Gk~---lvltTTNGT~~l----~r~~~~~i~~gslvNa~A-va~~~~ 129 (230)
T COG2045 77 LGNSPLEITGELVEGKT---LVLTTTNGTRAL----LRAKSEHILIGSLVNASA-VAEALK 129 (230)
T ss_pred CCCCHHHHhhhccCCCE---EEEEcCcHHHHH----HhccCcceeeeeehhHHH-HHHHHH
Confidence 889999999 667654 778999999887 445556899999999887 887764
No 38
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=20.97 E-value=3.3e+02 Score=27.91 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=40.7
Q ss_pred hhcCCCEEEEeccccchhc-HHHhcCCCCCCccceeeeCCCCCCChhhCCCChHHHHHHHHHHhcCCCceEEEeeCCCHH
Q 013131 35 AKAGCQFITVLGVDFMSEN-VRAILDQAGFQDVGVYRMSGERIGCSLADAAATPAYMNYLEAASTNPPSLHVIYINTSLE 113 (449)
Q Consensus 35 ~~~~a~~IVfcGV~FMAEt-AkaIL~p~~~~~~kvvllPd~~AgCsMAdm~~~e~v~~~~~~~~~~p~~~vV~YINSSAe 113 (449)
+..++.+|.|.|--+||+. +++++.-..+++.. += ..+.+..++|.++++++. +.|...++..|
T Consensus 124 a~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~---V~----------~r~~~~~~~~~~~~~~~g--~~v~~~~~~~e 188 (325)
T TIGR02371 124 ARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVS---VY----------CRTPSTREKFALRASDYE--VPVRAATDPRE 188 (325)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEE---EE----------CCCHHHHHHHHHHHHhhC--CcEEEeCCHHH
Confidence 4568999999999999997 22233221122222 22 335566666666655442 22333455555
Q ss_pred HHhhhcCCCCCEEEc
Q 013131 114 TKAYAHELVPTITCT 128 (449)
Q Consensus 114 VKA~ad~~vGDi~CT 128 (449)
.=.-| |+++|
T Consensus 189 av~~a-----DiVit 198 (325)
T TIGR02371 189 AVEGC-----DILVT 198 (325)
T ss_pred HhccC-----CEEEE
Confidence 44555 66554
No 39
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.67 E-value=6.6e+02 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=26.8
Q ss_pred cccccccCCCHHHHHHH------HHHCCCceEEE---ecCCcHHHH
Q 013131 200 GTCIVHHLFGHEVVEKI------NEMYCDAFLTA---HLEVPGEMF 236 (449)
Q Consensus 200 G~C~VH~~ft~e~V~~~------r~~yPdA~Vlv---HPEC~~EV~ 236 (449)
.+|.|-+.=..+.+..+ |+.+|+++|++ |++.-++-+
T Consensus 50 NTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~Gc~a~~~~~~~ 95 (448)
T PRK14333 50 NTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAGCVAQQEGESL 95 (448)
T ss_pred EeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEECccCccCHHHH
Confidence 78999886666654333 67789999998 888766543
No 40
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.48 E-value=1e+02 Score=31.91 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=32.5
Q ss_pred EEEEecccc--chhcHHHhcCCCCCCccceeeeCCCCCCChhhC----------CCChHHHHHHHHHH
Q 013131 41 FITVLGVDF--MSENVRAILDQAGFQDVGVYRMSGERIGCSLAD----------AAATPAYMNYLEAA 96 (449)
Q Consensus 41 ~IVfcGV~F--MAEtAkaIL~p~~~~~~kvvllPd~~AgCsMAd----------m~~~e~v~~~~~~~ 96 (449)
.+-++|-+- |+|.|+ |+...| ...+ |++.|||.-. |-+++-+.++.+++
T Consensus 70 ~vQl~gsdp~~l~eaA~-~~~~~g---~~~I---dlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~ 130 (323)
T COG0042 70 AVQLGGSDPELLAEAAK-IAEELG---ADII---DLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAM 130 (323)
T ss_pred EEEecCCCHHHHHHHHH-HHHhcC---CCEE---eeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHH
Confidence 455677765 999997 888753 2333 8999999643 44466655555543
Done!