Query 013131
Match_columns 449
No_of_seqs 210 out of 936
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wzu_A Quinolinate synthetase 100.0 5.2E-87 1.8E-91 661.7 25.9 273 1-409 24-298 (300)
2 1wzu_A Quinolinate synthetase 100.0 2.3E-44 7.7E-49 356.9 16.3 216 87-425 5-223 (300)
3 3tov_A Glycosyl transferase fa 30.6 43 0.0015 32.4 4.4 14 275-288 261-274 (349)
4 1j6o_A TATD-related deoxyribon 28.7 41 0.0014 31.1 3.7 25 204-228 138-164 (268)
5 2hjv_A ATP-dependent RNA helic 27.2 2.1E+02 0.0073 24.0 7.8 21 145-165 36-56 (163)
6 3tri_A Pyrroline-5-carboxylate 27.1 1.1E+02 0.0039 28.7 6.5 100 37-160 62-171 (280)
7 1t5i_A C_terminal domain of A 25.0 2.5E+02 0.0084 24.0 7.8 30 136-165 22-52 (172)
8 3lab_A Putative KDPG (2-keto-3 24.3 1.5E+02 0.0051 27.9 6.7 51 209-262 51-104 (217)
9 1psw_A ADP-heptose LPS heptosy 23.4 4.4E+02 0.015 24.3 11.3 74 20-105 10-86 (348)
10 1y0e_A Putative N-acetylmannos 22.2 1.1E+02 0.0036 27.3 5.1 40 210-253 107-146 (223)
11 3f4w_A Putative hexulose 6 pho 21.9 55 0.0019 29.0 3.0 45 206-250 37-81 (211)
12 2rb4_A ATP-dependent RNA helic 21.4 3.7E+02 0.013 22.6 10.6 26 140-165 29-55 (175)
13 1fuk_A Eukaryotic initiation f 20.8 2.8E+02 0.0096 23.2 7.3 33 133-165 18-51 (165)
No 1
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=100.00 E-value=5.2e-87 Score=661.68 Aligned_cols=273 Identities=25% Similarity=0.344 Sum_probs=226.5
Q ss_pred CChhHHHHhhhhhccCCCeeeechHHHHHHHHHHhhcCCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChh
Q 013131 1 MDPEVQGVLTAAQKYWPHIYISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSL 80 (449)
Q Consensus 1 ~~~EvQ~vADa~~~~~~~~~vGDSL~LA~~A~~a~~~~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsM 80 (449)
|+||||++|| |+||||+|+|.| +++++++||||||+||||||| ||+|+ |+||+||+++||||
T Consensus 24 ~~~EVqa~AD---------~~gdSl~la~~a---~~~~a~~IvF~gv~FMaetak-il~p~-----k~Vl~pd~~a~C~~ 85 (300)
T 1wzu_A 24 QLPEVQDIAD---------FIGDSLELARRA---TRVDADVIVFAGVDFMAETAK-ILNPD-----KVVLIPSREATCAM 85 (300)
T ss_dssp SCHHHHHHCS---------EEECHHHHHHHH---TTCSSSEEEEESCHHHHHHHH-HHCTT-----SEEECCC-------
T ss_pred CcHHHHHhhh---------heecHHHHHHHH---HhCCCCEEEEeCcchHHHHHH-HhCCC-----CEEECCCCCCCccc
Confidence 6899999999 999999999998 778999999999999999996 99984 78899999999999
Q ss_pred hCCCChHHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHH
Q 013131 81 ADAAATPAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANI 160 (449)
Q Consensus 81 Adm~~~e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nv 160 (449)
++|++.+++++|+++ ||++.||+|+|||+||||+| |+|||||||+++| +++++++|||+||+|||+|+
T Consensus 86 a~~~~~e~v~~~k~~---~Pda~vV~y~n~saeVka~a-----D~v~TSsna~~~v----~~~~~~~iif~pD~~Lg~~l 153 (300)
T 1wzu_A 86 ANMLKVEHILEAKRK---YPNAPVVLYVNSTAEAKAYA-----DVTVTSANAVEVV----KKLDSDVVIFGPDKNLAHYV 153 (300)
T ss_dssp -----CHHHHHHHHH---STTSCEEEESSSCHHHHTTC-----SEEECTTTHHHHH----HTCSCSEEEEESCHHHHHHH
T ss_pred ccCCCHHHHHHHHHH---CCCCeEEEecCChHHHHHhC-----CEEEchHHHHHHH----HhCCCCeEEEECChhHHHHH
Confidence 999999999998876 99999999999999999999 8999999999999 55678899999999999999
Q ss_pred HHHHHHhhcCChhhhhhcCCCCCccchhccccccccccc--cccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHH
Q 013131 161 TELFQQIAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQD--GTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSL 238 (449)
Q Consensus 161 a~~l~~~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~--G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~l 238 (449)
++++| ++ +|+|+ |+|+||++||.++|.++|++||||+|+|||||++||+++
T Consensus 154 ~~~~~-------k~--------------------~i~~~~~g~C~vh~~~t~e~i~~~~~~~P~a~v~~HPEc~~~v~~~ 206 (300)
T 1wzu_A 154 AKMTG-------KK--------------------IIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMIHPECIPEVQEK 206 (300)
T ss_dssp HHHHC-------CE--------------------EEEC-----------CCHHHHHHHHHHCTTCEEEECTTSCHHHHHT
T ss_pred HHHcC-------Ce--------------------EEECCCCCcCCCcccCCHHHHHHHHHHCCCCEEEECCCCCHHHHhh
Confidence 98754 12 47899 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccC
Q 013131 239 AMEAKKRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVS 318 (449)
Q Consensus 239 A~~~~~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 318 (449)
| ||||||++||+|+++ ++ +||||||.||+|+| |+ .+|+|+||++ +
T Consensus 207 a--------D~vgST~~ii~~~~~----------~~--~~iv~TE~g~~~~l----~~----------~~p~k~f~~~-~ 251 (300)
T 1wzu_A 207 A--------DIIASTGGMIKRACE----------WD--EWVVFTEREMVYRL----RK----------LYPQKKFYPA-R 251 (300)
T ss_dssp C--------SEECCHHHHHHHGGG----------CS--EEEEESCTHHHHHH----HH----------HCTTSEEEET-T
T ss_pred c--------cccCCHHHHHHHHHh----------CC--CEEEEechHHHHHH----HH----------HCCCCEEEeC-C
Confidence 9 999999999999998 34 99999999999999 44 4899999888 2
Q ss_pred CcccccccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHH
Q 013131 319 SDSMTKSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFK 398 (449)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~ 398 (449)
.+| .|||||||||++|+|+|+. +.++|+|+|+++.+
T Consensus 252 ----------------------------------~~~-------~C~~Mk~~tl~~l~~~L~~---~~~ei~v~~~~~~~ 287 (300)
T 1wzu_A 252 ----------------------------------EDA-------FCIGMKAITLKNIYESLKD---MKYKVEVPEEIARK 287 (300)
T ss_dssp ----------------------------------TTC-------CC----CCCHHHHHHHHHH---TCSBCCCCHHHHHH
T ss_pred ----------------------------------CCC-------cCcCchhcCHHHHHHHHhc---CCCeEEcCHHHHHH
Confidence 134 8999999999999999885 56899999999999
Q ss_pred HhhhhhhhHHh
Q 013131 399 LQTLQGKSIAD 409 (449)
Q Consensus 399 a~~~l~r~~~~ 409 (449)
|+.+++|||..
T Consensus 288 A~~~l~rMl~~ 298 (300)
T 1wzu_A 288 ARKAIERMLEM 298 (300)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99988888864
No 2
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=100.00 E-value=2.3e-44 Score=356.89 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCCceEEEeeCCCHHHHhhhcCCCCCEEEcChhHHHHHHHHHhcCCCCcEEEecCcchHHHHHHHHHH
Q 013131 87 PAYMNYLEAASTNPPSLHVIYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQIPDLNIWYGPDSYMGANITELFQQ 166 (449)
Q Consensus 87 e~v~~~~~~~~~~p~~~vV~YINSSAeVKA~ad~~vGDi~CTSSNAvkiV~~a~~~~p~~~IlF~PD~~LG~nva~~l~~ 166 (449)
+++++|+++ ||+++|+|+||++|||++| |+||||+|+.+++ ++++.+.|+|+||+|||+|++. +.
T Consensus 5 e~I~~lk~e----~~avIvah~y~~~EVqa~A-----D~~gdSl~la~~a----~~~~a~~IvF~gv~FMaetaki-l~- 69 (300)
T 1wzu_A 5 EEILRLKEE----RNAIILAHNYQLPEVQDIA-----DFIGDSLELARRA----TRVDADVIVFAGVDFMAETAKI-LN- 69 (300)
T ss_dssp HHHHHHHHH----HTEEEEEETTSCHHHHHHC-----SEEECHHHHHHHH----TTCSSSEEEEESCHHHHHHHHH-HC-
T ss_pred HHHHHHHhc----CCCEEEEEcCCcHHHHHhh-----hheecHHHHHHHH----HhCCCCEEEEeCcchHHHHHHH-hC-
Confidence 566666653 8999999999999999999 8999999999999 7788888999999999998754 31
Q ss_pred hhcCChhhhhhcCCCCCccchhccccccccccc---cccccccCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHh
Q 013131 167 IAMMSDEEIAEIHPKHNKDSIKSLLPRLHYYQD---GTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAK 243 (449)
Q Consensus 167 ~~~~~dk~i~~~~p~~~~~~~~~l~p~~~ilw~---G~C~VH~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~ 243 (449)
+++ +++|+ |+|++|++|++++++++|++|||+.|++||||++||+++|
T Consensus 70 -----p~k--------------------~Vl~pd~~a~C~~a~~~~~e~v~~~k~~~Pda~vV~y~n~saeVka~a---- 120 (300)
T 1wzu_A 70 -----PDK--------------------VVLIPSREATCAMANMLKVEHILEAKRKYPNAPVVLYVNSTAEAKAYA---- 120 (300)
T ss_dssp -----TTS--------------------EEECCC------------CHHHHHHHHHSTTSCEEEESSSCHHHHTTC----
T ss_pred -----CCC--------------------EEECCCCCCCcccccCCCHHHHHHHHHHCCCCeEEEecCChHHHHHhC----
Confidence 222 25677 9999999999999999999999999999999999999999
Q ss_pred hcCCccccChHHHHHHHHHHHhhhhccCCCCCCeEEEEeCchhHHHHHHHHHHhhccccCCCCCCcceEEEcccCCcccc
Q 013131 244 KRGMGVVGSTKNILDFIKERVQEALDRDVDDHLQFVLGTESGMLTSIVAAVCNLLGSAKSSGNSKINVEIVFPVSSDSMT 323 (449)
Q Consensus 244 ~~~~D~VGSTs~II~~v~~~~~~a~~~~~~~~~~fIIGTE~Glv~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (449)
|++|||||+++|+++ .++++|||+||.||.+++ |+. .+
T Consensus 121 ----D~v~TSsna~~~v~~----------~~~~~iif~pD~~Lg~~l----~~~-----------~~------------- 158 (300)
T 1wzu_A 121 ----DVTVTSANAVEVVKK----------LDSDVVIFGPDKNLAHYV----AKM-----------TG------------- 158 (300)
T ss_dssp ----SEEECTTTHHHHHHT----------CSCSEEEEESCHHHHHHH----HHH-----------HC-------------
T ss_pred ----CEEEchHHHHHHHHh----------CCCCeEEEECChhHHHHH----HHH-----------cC-------------
Confidence 999999999999997 578999999999999999 331 13
Q ss_pred cccccCCccccccccCCCcccccccCCCCCCCCCCCCCCCCcccccCChHHHHHHHhhCCCCCCeEEeChhhHHHHhhhh
Q 013131 324 KSSISSSSNLKSVTLGDVALPVIPGVASGEGCSTNGGCASCPYMKMNSLSSLLKVCHQLPHGKNNLKAYEAERFKLQTLQ 403 (449)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~ip~p~~g~gcs~~~~Ca~Cp~MkmntL~~l~~~~~~l~~~~~~i~v~~~~~~~a~~~l 403 (449)
+.|++++.+ | .||+|++||+++|+++++. +++..|.+|||++..-..
T Consensus 159 -------------------k~~i~~~~~--g--------~C~vh~~~t~e~i~~~~~~--~P~a~v~~HPEc~~~v~~-- 205 (300)
T 1wzu_A 159 -------------------KKIIPVPSK--G--------HCYVHQKFTLDDVERAKKL--HPNAKLMIHPECIPEVQE-- 205 (300)
T ss_dssp -------------------CEEEEC---------------------CCHHHHHHHHHH--CTTCEEEECTTSCHHHHH--
T ss_pred -------------------CeEEECCCC--C--------cCCCcccCCHHHHHHHHHH--CCCCEEEECCCCCHHHHh--
Confidence 455555542 3 8999999999999999886 899999999999866322
Q ss_pred hhhHHhhcCcchHHHHhHHHhc
Q 013131 404 GKSIADVGCEPILHMRHFQAKK 425 (449)
Q Consensus 404 ~r~~~~~~~~pi~~M~~f~~~~ 425 (449)
+ +-..-.=..|++|++..
T Consensus 206 ---~-aD~vgST~~ii~~~~~~ 223 (300)
T 1wzu_A 206 ---K-ADIIASTGGMIKRACEW 223 (300)
T ss_dssp ---T-CSEECCHHHHHHHGGGC
T ss_pred ---h-ccccCCHHHHHHHHHhC
Confidence 1 11233456777777654
No 3
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=30.63 E-value=43 Score=32.44 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=12.5
Q ss_pred CCeEEEEeCchhHH
Q 013131 275 HLQFVLGTESGMLT 288 (449)
Q Consensus 275 ~~~fIIGTE~Glv~ 288 (449)
...++||.|.|.+|
T Consensus 261 ~a~~~i~~DsG~~H 274 (349)
T 3tov_A 261 RCNLLITNDSGPMH 274 (349)
T ss_dssp TCSEEEEESSHHHH
T ss_pred hCCEEEECCCCHHH
Confidence 46699999999999
No 4
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=28.66 E-value=41 Score=31.08 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=19.3
Q ss_pred cccCCCHHHHHHHHHHCC--CceEEEe
Q 013131 204 VHHLFGHEVVEKINEMYC--DAFLTAH 228 (449)
Q Consensus 204 VH~~ft~e~V~~~r~~yP--dA~VlvH 228 (449)
+|-+-..+++.++-++|| +.+++.|
T Consensus 138 iH~~~~~~~~~~il~~~p~~~~~~I~H 164 (268)
T 1j6o_A 138 VHIRDAYSEAYEILRTESLPEKRGVIH 164 (268)
T ss_dssp EEEESCHHHHHHHHHHSCCCSSCEEET
T ss_pred EEeCchHHHHHHHHHhcCCCCCCEEEE
Confidence 444446778888888899 8898889
No 5
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=27.20 E-value=2.1e+02 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=17.8
Q ss_pred CCcEEEecCcchHHHHHHHHH
Q 013131 145 DLNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 145 ~~~IlF~PD~~LG~nva~~l~ 165 (449)
++.|+|++.+...+.+++.|.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~ 56 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELD 56 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHH
Confidence 456999999999998888775
No 6
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=27.12 E-value=1.1e+02 Score=28.67 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=56.4
Q ss_pred cCCCEEEEec-cccchhcHHH---h-cCCCCCCccceeeeCCCCCCChhhCCCChHHHHHHHHHHhcCCCceEEEeeCCC
Q 013131 37 AGCQFITVLG-VDFMSENVRA---I-LDQAGFQDVGVYRMSGERIGCSLADAAATPAYMNYLEAASTNPPSLHVIYINTS 111 (449)
Q Consensus 37 ~~a~~IVfcG-V~FMAEtAka---I-L~p~~~~~~kvvllPd~~AgCsMAdm~~~e~v~~~~~~~~~~p~~~vV~YINSS 111 (449)
.++|+|++|= ...+.+..+. . |.+ ++++ + |.+-.++.+.+.+++. .+..++-+.=|+.
T Consensus 62 ~~aDvVilav~p~~~~~vl~~l~~~~l~~-----~~ii-i-------S~~agi~~~~l~~~l~----~~~~vvr~mPn~p 124 (280)
T 3tri_A 62 LNADVVVLAVKPHQIKMVCEELKDILSET-----KILV-I-------SLAVGVTTPLIEKWLG----KASRIVRAMPNTP 124 (280)
T ss_dssp SSCSEEEECSCGGGHHHHHHHHHHHHHTT-----TCEE-E-------ECCTTCCHHHHHHHHT----CCSSEEEEECCGG
T ss_pred hcCCeEEEEeCHHHHHHHHHHHHhhccCC-----CeEE-E-------EecCCCCHHHHHHHcC----CCCeEEEEecCCh
Confidence 4678777764 3334444332 2 444 2343 3 4444666677665553 3445666677988
Q ss_pred HHHHhhhcCCCCCEEE----cChhHHHHHHHHHhcCCCCcEEEe-cCcchHHHH
Q 013131 112 LETKAYAHELVPTITC----TSSNVVQTILQAFAQIPDLNIWYG-PDSYMGANI 160 (449)
Q Consensus 112 AeVKA~ad~~vGDi~C----TSSNAvkiV~~a~~~~p~~~IlF~-PD~~LG~nv 160 (449)
+.+..-. ..+| ||....+.+++.|+.+ ++ +.++ |...+...+
T Consensus 125 ~~v~~g~-----~~l~~~~~~~~~~~~~v~~l~~~i-G~-~~~v~~E~~~d~~t 171 (280)
T 3tri_A 125 SSVRAGA-----TGLFANETVDKDQKNLAESIMRAV-GL-VIWVSSEDQIEKIA 171 (280)
T ss_dssp GGGTCEE-----EEEECCTTSCHHHHHHHHHHHGGG-EE-EEECSSHHHHHHHH
T ss_pred HHhcCcc-----EEEEeCCCCCHHHHHHHHHHHHHC-CC-eEEECCHHHhhHHH
Confidence 8876422 2233 3445677778888888 44 5555 656555544
No 7
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=24.97 E-value=2.5e+02 Score=23.98 Aligned_cols=30 Identities=3% Similarity=0.119 Sum_probs=21.7
Q ss_pred HHHHHhcCC-CCcEEEecCcchHHHHHHHHH
Q 013131 136 ILQAFAQIP-DLNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 136 V~~a~~~~p-~~~IlF~PD~~LG~nva~~l~ 165 (449)
+...++..+ ++.|+|++.+...+.++..|.
T Consensus 22 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~ 52 (172)
T 1t5i_A 22 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLV 52 (172)
T ss_dssp HHHHHHHSCCSSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcEEEEECCHHHHHHHHHHHH
Confidence 333345554 445999999999998988875
No 8
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=24.31 E-value=1.5e+02 Score=27.95 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccc---cChHHHHHHHHH
Q 013131 209 GHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVV---GSTKNILDFIKE 262 (449)
Q Consensus 209 t~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~V---GSTs~II~~v~~ 262 (449)
..+.|+++|++||++.|-+--=++.+-++.| ...|.+|+ |.+..+++++++
T Consensus 51 a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~a---i~AGA~fivsP~~~~evi~~~~~ 104 (217)
T 3lab_A 51 GLAAISAIKKAVPEAIVGAGTVCTADDFQKA---IDAGAQFIVSPGLTPELIEKAKQ 104 (217)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCSHHHHHHH---HHHTCSEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeEeeccccCHHHHHHH---HHcCCCEEEeCCCcHHHHHHHHH
Confidence 3466777777777766655544443333332 44566666 444566666655
No 9
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=23.36 E-value=4.4e+02 Score=24.31 Aligned_cols=74 Identities=7% Similarity=-0.054 Sum_probs=35.2
Q ss_pred eeechHHHHHHHHHHhhc--CCCEEEEeccccchhcHHHhcCCCCCCccceeeeCCCCCCChhhCCCChHHHHHHHHHHh
Q 013131 20 YISDSLVMADTAVKMAKA--GCQFITVLGVDFMSENVRAILDQAGFQDVGVYRMSGERIGCSLADAAATPAYMNYLEAAS 97 (449)
Q Consensus 20 ~vGDSL~LA~~A~~a~~~--~a~~IVfcGV~FMAEtAkaIL~p~~~~~~kvvllPd~~AgCsMAdm~~~e~v~~~~~~~~ 97 (449)
.+||-+...-.....++. ++++.++++= -|++-.+ .+|. =.+++.++... + ......+.++.++++
T Consensus 10 ~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~-~~~~l~~--~~p~---i~~v~~~~~~~-~-----~~~~~~~~~l~~~l~ 77 (348)
T 1psw_A 10 WVGDMMMSQSLYRTLQARYPQAIIDVMAPA-WCRPLLS--RMPE---VNEAIPMPLGH-G-----ALEIGERRKLGHSLR 77 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCEEEEEECG-GGHHHHT--TCTT---EEEEEEC-------------CHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHCCCCEEEEEECc-chhHHHh--cCCc---cCEEEEecCCc-c-----ccchHHHHHHHHHHH
Confidence 578886554433333343 7888888884 4444331 2331 11344343211 1 112345566677776
Q ss_pred cC-CCceEE
Q 013131 98 TN-PPSLHV 105 (449)
Q Consensus 98 ~~-p~~~vV 105 (449)
+. +|.++.
T Consensus 78 ~~~~D~vid 86 (348)
T 1psw_A 78 EKRYDRAYV 86 (348)
T ss_dssp TTTCSEEEE
T ss_pred hcCCCEEEE
Confidence 64 665543
No 10
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=22.23 E-value=1.1e+02 Score=27.34 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccccCh
Q 013131 210 HEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVVGST 253 (449)
Q Consensus 210 ~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~VGST 253 (449)
.+.++++|+.||+..+++-+.++.|+.+ +...|.|+++.+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~----~~~~G~d~i~~~ 146 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKN----AARLGFDYIGTT 146 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHH----HHHTTCSEEECT
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHH----HHHcCCCEEEeC
Confidence 4679999999999999998887777544 345778998753
No 11
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=21.86 E-value=55 Score=28.98 Aligned_cols=45 Identities=16% Similarity=0.033 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHHHHCCCceEEEecCCcHHHHHHHHHHhhcCCccc
Q 013131 206 HLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKKRGMGVV 250 (449)
Q Consensus 206 ~~ft~e~V~~~r~~yPdA~VlvHPEC~~EV~~lA~~~~~~~~D~V 250 (449)
-.++++.|+++|+.+|+..|.+|+=........+.++...|.|++
T Consensus 37 ~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v 81 (211)
T 3f4w_A 37 IREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYV 81 (211)
T ss_dssp HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEE
T ss_pred HhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEE
Confidence 346789999999999999999887543211122344566777864
No 12
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=21.39 E-value=3.7e+02 Score=22.65 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=19.8
Q ss_pred HhcCCC-CcEEEecCcchHHHHHHHHH
Q 013131 140 FAQIPD-LNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 140 ~~~~p~-~~IlF~PD~~LG~nva~~l~ 165 (449)
++..+. +.|+|++.+...+.++..|.
T Consensus 29 l~~~~~~~~lVF~~~~~~~~~l~~~L~ 55 (175)
T 2rb4_A 29 YGSITIGQAIIFCQTRRNAKWLTVEMI 55 (175)
T ss_dssp HTTSCCSEEEEECSCHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEECCHHHHHHHHHHHH
Confidence 355543 45999999999998888774
No 13
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=20.83 E-value=2.8e+02 Score=23.17 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCC-CCcEEEecCcchHHHHHHHHH
Q 013131 133 VQTILQAFAQIP-DLNIWYGPDSYMGANITELFQ 165 (449)
Q Consensus 133 vkiV~~a~~~~p-~~~IlF~PD~~LG~nva~~l~ 165 (449)
.+.+.+.++..+ ++.|+|++.+...+.++..|.
T Consensus 18 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~ 51 (165)
T 1fuk_A 18 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLR 51 (165)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH
Confidence 333444445554 445999999988888888764
Done!