Query 013132
Match_columns 449
No_of_seqs 211 out of 1663
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 1.2E-05 4.2E-10 66.9 10.6 71 193-263 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 8.1E-06 2.8E-10 70.7 7.8 69 194-262 35-104 (137)
3 2i68_A Protein EMRE; transmemb 97.4 0.00026 8.7E-09 61.2 7.1 54 361-414 49-104 (137)
4 3b5d_A Multidrug transporter E 96.6 0.0084 2.9E-07 49.5 8.8 53 362-414 50-104 (110)
5 3l1l_A Arginine/agmatine antip 21.1 5E+02 0.017 25.0 10.5 26 389-414 402-427 (445)
6 2l2t_A Receptor tyrosine-prote 8.8 1.6E+02 0.0056 19.6 1.8 8 407-414 29-36 (44)
7 4dve_A Biotin transporter BIOY 8.6 9.8E+02 0.033 21.0 9.5 93 183-278 10-109 (198)
8 2ks1_B Epidermal growth factor 6.3 2.5E+02 0.0087 18.6 1.8 7 408-414 31-37 (44)
9 2koe_A Human cannabinoid recep 3.8 1E+02 0.0035 19.0 -1.6 15 3-17 14-28 (40)
10 2zxe_G FXYD10, phospholemman-l 3.1 5.8E+02 0.02 18.9 1.8 14 398-411 25-38 (74)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.17 E-value=1.2e-05 Score=66.89 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHH-HhhHHHHHHHHHHHHcCcccChhhHHHHHHHHhhhhhhcccc
Q 013132 193 TPVAFCHALGHVMSNVSFATVAVSFTHTI-KALEPFFNAAASQFVLGHQIPLSLWLSLAPVVIGVSMASLTE 263 (449)
Q Consensus 193 l~~gl~~~~~~~~~~~sL~~vsvs~a~ii-ks~~Pift~lls~l~l~e~~s~~~~lsllliv~Gv~L~~~~e 263 (449)
+...+++.....+...++++.+++.+..+ ..+.|+++++++++++||++++.+++|+.++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566777888899999999999888 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.07 E-value=8.1e-06 Score=70.68 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHH-HhhHHHHHHHHHHHHcCcccChhhHHHHHHHHhhhhhhccc
Q 013132 194 PVAFCHALGHVMSNVSFATVAVSFTHTI-KALEPFFNAAASQFVLGHQIPLSLWLSLAPVVIGVSMASLT 262 (449)
Q Consensus 194 ~~gl~~~~~~~~~~~sL~~vsvs~a~ii-ks~~Pift~lls~l~l~e~~s~~~~lsllliv~Gv~L~~~~ 262 (449)
...+++.+..++.+.++++++++.+..+ ..+.|+++++++++++||++++.+++|+.++++|+++....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3334566778889999999999999888 89999999999999999999999999999999999987543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.44 E-value=0.00026 Score=61.19 Aligned_cols=54 Identities=13% Similarity=0.016 Sum_probs=38.1
Q ss_pred HHhhccChhHHHHH-hhhhHHHHHHHHHHhhCccchh-HHHHHHHHHhhhhhhhhh
Q 013132 361 NTLERVAPLTHAVG-NVLKRVFVIGFSIVVFGNYFTA-SFHDLCADIHPEFCSNIR 414 (449)
Q Consensus 361 ~~l~~isp~t~Si~-~~lk~v~~il~sillfge~ls~-~~iGg~lil~Gv~ly~~~ 414 (449)
..++++++...... ..+.|++++++|+++|||++++ +.+|+++++.|+++.+..
T Consensus 49 ~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 37888888876555 7899999999999999999998 699999999999999764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.63 E-value=0.0084 Score=49.49 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=44.5
Q ss_pred HhhccChhHH-HHHhhhhHHHHHHHHHHhhCccchh-HHHHHHHHHhhhhhhhhh
Q 013132 362 TLERVAPLTH-AVGNVLKRVFVIGFSIVVFGNYFTA-SFHDLCADIHPEFCSNIR 414 (449)
Q Consensus 362 ~l~~isp~t~-Si~~~lk~v~~il~sillfge~ls~-~~iGg~lil~Gv~ly~~~ 414 (449)
.+++.+..+. .+...+.++.+.+.++++|||++++ +.+|.++++.|+++.+..
T Consensus 50 al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 50 TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5677766665 4446799999999999999999998 689999999999998654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=21.08 E-value=5e+02 Score=24.95 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=16.0
Q ss_pred hhCccchhHHHHHHHHHhhhhhhhhh
Q 013132 389 VFGNYFTASFHDLCADIHPEFCSNIR 414 (449)
Q Consensus 389 lfge~ls~~~iGg~lil~Gv~ly~~~ 414 (449)
++.........|..+++.|+.+|...
T Consensus 402 ~~~~~~~~~~~~~~~~~~g~~~y~~~ 427 (445)
T 3l1l_A 402 VVGSGAKEVMWSFVTLMVITAMYALN 427 (445)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333466777888888887544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.77 E-value=1.6e+02 Score=19.63 Aligned_cols=8 Identities=13% Similarity=-0.326 Sum_probs=3.4
Q ss_pred hhhhhhhh
Q 013132 407 PEFCSNIR 414 (449)
Q Consensus 407 Gv~ly~~~ 414 (449)
++++|-++
T Consensus 29 ~~~~~~RR 36 (44)
T 2l2t_A 29 TFAVYVRR 36 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 34444443
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=8.65 E-value=9.8e+02 Score=20.98 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=47.0
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhHHHHHHHHHHHHcCcccC-hhhHHHHHHHHhhhhhhc
Q 013132 183 PINK-ELLVILTPVAFCHALGHVMSNVSFATVAVSFTHTIKALEPFFNAAASQFVLGHQIP-LSLWLSLAPVVIGVSMAS 260 (449)
Q Consensus 183 ~~~~-~~~~~~l~~gl~~~~~~~~~~~sL~~vsvs~a~iiks~~Pift~lls~l~l~e~~s-~~~~lsllliv~Gv~L~~ 260 (449)
.+++ +..+.+..++++-+.-.++.+.+ .+++++.-+=..++.+++.+.+. ++|.|.. ....+=++++..|+=+.+
T Consensus 10 am~~~~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG~-~LG~r~G~lsv~lYlllG~~GlPVFa 86 (198)
T 4dve_A 10 AMTNNQKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAGG-LLGPKYGTISVGAFLALALIGLPVLT 86 (198)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCCCBT
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHHH-HHChhHHHHHHHHHHHHHHHcCcccc
Confidence 3444 35666777776655544444332 12222221212456666666665 4554444 455555666777775554
Q ss_pred ccccc-----ccHHHHHHHHHHH
Q 013132 261 LTELS-----FNWTGFISAMISN 278 (449)
Q Consensus 261 ~~e~~-----f~~~G~l~~l~s~ 278 (449)
.+... ....|+++...-+
T Consensus 87 gg~gG~~~l~gPTgGYLiGF~~a 109 (198)
T 4dve_A 87 GGNGGAASFLGPSGGYRIAWLFT 109 (198)
T ss_dssp TTBCCSGGGGSTTHHHHHHHHHH
T ss_pred CCCCchhHHhcchhHHHHHHHHH
Confidence 43221 1346877765533
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.31 E-value=2.5e+02 Score=18.64 Aligned_cols=7 Identities=14% Similarity=-0.572 Sum_probs=2.9
Q ss_pred hhhhhhh
Q 013132 408 EFCSNIR 414 (449)
Q Consensus 408 v~ly~~~ 414 (449)
+++|-++
T Consensus 31 ~~~~~RR 37 (44)
T 2ks1_B 31 IGLFMRR 37 (44)
T ss_dssp HHHHHHT
T ss_pred HHHHhhh
Confidence 3444333
No 9
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=3.79 E-value=1e+02 Score=19.04 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=10.1
Q ss_pred CCCCceeeeeccCcc
Q 013132 3 STANPVQYSIKTPRI 17 (449)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (449)
|..||+.|....+.+
T Consensus 14 s~lNPiIY~~~~~~f 28 (40)
T 2koe_A 14 STVNPIIYALRSKDL 28 (40)
T ss_dssp HHSSTTTTBTTBHHH
T ss_pred HHHHHHHHHHccHHH
Confidence 456888887765544
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=3.12 E-value=5.8e+02 Score=18.89 Aligned_cols=14 Identities=0% Similarity=-0.294 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhhh
Q 013132 398 FHDLCADIHPEFCS 411 (449)
Q Consensus 398 ~iGg~lil~Gv~ly 411 (449)
++++++.+.|+.+.
T Consensus 25 ifA~vLfi~GI~ii 38 (74)
T 2zxe_G 25 IVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44556667775555
Done!