Query 013132
Match_columns 449
No_of_seqs 211 out of 1663
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 04:48:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 9.9 5.4E+02 0.039 22.7 22.3 21 227-247 240-260 (383)
2 d1rutx1 g.39.1.3 (X:19-48) LIM 5.2 1.1E+02 0.0081 17.3 1.0 12 433-444 4-15 (30)
3 d1j2oa1 g.39.1.3 (A:1-30) Rhom 3.8 1.7E+02 0.012 16.5 1.0 12 433-444 5-16 (30)
4 d1pv7a_ f.38.1.2 (A:) Lactose 3.6 9.2E+02 0.067 19.0 10.6 14 138-151 24-37 (417)
5 d1y0jb1 g.37.1.2 (B:1-36) U-sh 3.6 1.4E+02 0.01 17.0 0.6 7 431-437 29-35 (36)
6 d1x6fa1 g.37.1.1 (A:8-82) Zinc 3.4 1.3E+02 0.0092 20.1 0.2 13 431-443 18-30 (75)
7 d1iwga8 f.35.1.1 (A:513-566,A: 2.8 1.1E+03 0.079 18.3 9.1 33 380-412 95-127 (222)
8 d1u5sb1 g.39.1.3 (B:72-102) Pi 2.4 2.4E+02 0.018 15.8 0.7 12 433-444 7-18 (31)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 2.2 3.9E+02 0.028 15.1 1.4 11 402-412 15-25 (34)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 2.1 1.3E+03 0.092 17.5 7.9 44 364-407 61-104 (199)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.91 E-value=5.4e+02 Score=22.71 Aligned_cols=21 Identities=10% Similarity=-0.113 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCcccChhhHH
Q 013132 227 FFNAAASQFVLGHQIPLSLWL 247 (449)
Q Consensus 227 ift~lls~l~l~e~~s~~~~l 247 (449)
.++.++...+.++|++.....
T Consensus 240 ~~~~~~~~~~~~~k~~~~~~~ 260 (383)
T d1u7ga_ 240 ILGWIFGEWALRGLPSLLGAC 260 (383)
T ss_dssp HHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHH
Confidence 333333334556777755443
No 2
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.15 E-value=1.1e+02 Score=17.27 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.5
Q ss_pred hccccccccccC
Q 013132 433 YCSHKETRILDR 444 (449)
Q Consensus 433 ~~~~~~~~~~~~ 444 (449)
.|-+|..+|+||
T Consensus 4 ~CaGC~~~I~DR 15 (30)
T d1rutx1 4 RCAGCGGKIADR 15 (30)
T ss_dssp BBTTTCCBCCCS
T ss_pred ccCCCCCccchh
Confidence 688999999987
No 3
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.79 E-value=1.7e+02 Score=16.49 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=9.9
Q ss_pred hccccccccccC
Q 013132 433 YCSHKETRILDR 444 (449)
Q Consensus 433 ~~~~~~~~~~~~ 444 (449)
.|-+|..+|+||
T Consensus 5 ~CaGC~~~I~DR 16 (30)
T d1j2oa1 5 TCGGCQQNIGDR 16 (30)
T ss_dssp CBSSSCSCBCSS
T ss_pred ccCCCCCcchHH
Confidence 588888889887
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.61 E-value=9.2e+02 Score=19.01 Aligned_cols=14 Identities=7% Similarity=0.085 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 013132 138 NVIFNILNKKVYNY 151 (449)
Q Consensus 138 s~~~~i~nK~~l~~ 151 (449)
+....++..++.++
T Consensus 24 ~~~~~~l~~~l~~~ 37 (417)
T d1pv7a_ 24 GAYFPFFPIWLHDI 37 (417)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 33344444444444
No 5
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.59 E-value=1.4e+02 Score=16.96 Aligned_cols=7 Identities=71% Similarity=1.796 Sum_probs=3.8
Q ss_pred hhhcccc
Q 013132 431 QYYCSHK 437 (449)
Q Consensus 431 ~~~~~~~ 437 (449)
.|||+|.
T Consensus 29 tyycshr 35 (36)
T d1y0jb1 29 AYYCSHR 35 (36)
T ss_dssp TTTTCSC
T ss_pred heeeecc
Confidence 3466663
No 6
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.35 E-value=1.3e+02 Score=20.14 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=9.9
Q ss_pred hhhcccccccccc
Q 013132 431 QYYCSHKETRILD 443 (449)
Q Consensus 431 ~~~~~~~~~~~~~ 443 (449)
.|-|.||+.|.+-
T Consensus 18 ~yQC~HCd~K~~s 30 (75)
T d1x6fa1 18 TYQCKHCDSKLQS 30 (75)
T ss_dssp CEECSSSCCEESS
T ss_pred eeeechhHHHHhh
Confidence 4579999988763
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.82 E-value=1.1e+03 Score=18.31 Aligned_cols=33 Identities=12% Similarity=-0.154 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhCccchhHHHHHHHHHhhhhhhh
Q 013132 380 VFVIGFSIVVFGNYFTASFHDLCADIHPEFCSN 412 (449)
Q Consensus 380 v~~il~sillfge~ls~~~iGg~lil~Gv~ly~ 412 (449)
+...+.+..+.+.+++.....+.+.+.|+...|
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~ 127 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSAKN 127 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhhhH
Confidence 344556777888889876655666667766554
No 8
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.44 E-value=2.4e+02 Score=15.85 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=9.2
Q ss_pred hccccccccccC
Q 013132 433 YCSHKETRILDR 444 (449)
Q Consensus 433 ~~~~~~~~~~~~ 444 (449)
.|-.|..+|+|+
T Consensus 7 ~C~~C~~PI~~~ 18 (31)
T d1u5sb1 7 ICGACRRPIEGR 18 (31)
T ss_dssp EETTTTEECCSC
T ss_pred chhhcCCchhhh
Confidence 577888888875
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.17 E-value=3.9e+02 Score=15.10 Aligned_cols=11 Identities=18% Similarity=-0.040 Sum_probs=8.0
Q ss_pred HHHHhhhhhhh
Q 013132 402 CADIHPEFCSN 412 (449)
Q Consensus 402 ~lil~Gv~ly~ 412 (449)
++.+.|+++|-
T Consensus 15 vi~~vG~FfYG 25 (34)
T d2axtj1 15 VIVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhheeeeeee
Confidence 46777888883
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.14 E-value=1.3e+03 Score=17.47 Aligned_cols=44 Identities=7% Similarity=-0.216 Sum_probs=24.7
Q ss_pred hccChhHHHHHhhhhHHHHHHHHHHhhCccchhHHHHHHHHHhh
Q 013132 364 ERVAPLTHAVGNVLKRVFVIGFSIVVFGNYFTASFHDLCADIHP 407 (449)
Q Consensus 364 ~~isp~t~Si~~~lk~v~~il~sillfge~ls~~~iGg~lil~G 407 (449)
+...+.........-.+........++|.+++.....+..++.|
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 43444444444445555666666778888888754433333334
Done!