BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013133
         (449 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
 pdb|3HL2|B Chain B, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
 pdb|3HL2|C Chain C, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
 pdb|3HL2|D Chain D, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
          Length = 501

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 12/208 (5%)

Query: 64  AATGNTEPSAPPQADEETLIKVPGAILHLIDQSYSVELACSDFKIIRLIQDGNVV----A 119
           + T    P  P + +E  +I     I H+++ +Y V+ +    K + LIQ G  V    A
Sbjct: 222 STTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSS----KCMHLIQQGARVGRIDA 277

Query: 120 VLASVGDEVQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIASKGQEKL 179
            + S+      P+   I A   D      S  +P +  ++   D+L   L++ S G +KL
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKL 337

Query: 180 LQELDGILQQYSCFSVQKVSEKVKEIDGEIAKEVTPLEMTGKKREVMEEKSAAYWTTLAP 239
           L+E   +   Y    ++K+SE   E           L MT K  +   +K+    T L  
Sbjct: 338 LKERKEMF-SYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAV---TQLGS 393

Query: 240 NVEDYSGTAAKLIAAGSGQLIRGILWCG 267
            +     + A+++  GS Q + G  + G
Sbjct: 394 MLFTRQVSGARVVPLGSMQTVSGYTFRG 421


>pdb|1UX6|A Chain A, Structure Of A Thrombospondin C-Terminal Fragment Reveals
           A Novel Calcium Core In The Type 3 Repeats
          Length = 350

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 204 EIDGEIAKEVTPLEMTGKKREVMEEK-SAAYWTTLAPNVEDYSGTAAKLIAA--GSGQLI 260
           E D + A  V   + + +   VM ++ + +YW T     + YSG + K++ +  G G+ +
Sbjct: 197 ERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVKSTTGPGEHL 256

Query: 261 RGILW 265
           R  LW
Sbjct: 257 RNALW 261


>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
           From Methanopyrus Kandleri
          Length = 506

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 119 AVLASVGDEVQWPLTKDIAAVKLDD---SHY--FFSLSFPPQPGSNSDSD 163
           AVLA++    QWP    IA + LD    SH+     L   P+PG   + D
Sbjct: 341 AVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQD 390


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,396,469
Number of Sequences: 62578
Number of extensions: 426418
Number of successful extensions: 924
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 7
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)