BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013133
(449 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JNJ3|SPG20_BOVIN Spartin OS=Bos taurus GN=SPG20 PE=2 SV=1
Length = 668
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 238 APNVEDYSGTAAKLIAAGSGQLIRGILWCGEVTVDRLKWGNKVLKKRMIPGETS-EVSPQ 296
A + ++S A I +G+ + G++ E T ++ G L++R+ P E EVSP
Sbjct: 413 AKELPEWSEKVAHNILSGASWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPA 472
Query: 297 TLKRIKRAKRVTKMTEKVATGVLSGVVKVSGFFTSSVAN--TKAGKKFF----------- 343
K + AK+ T KV+ ++ GV V+ +A K G K
Sbjct: 473 VTKGLYMAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDRNGK 532
Query: 344 NLLPGEIVLA--SLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKAAEATSEGLD 401
+ L G +V+A S+ GF+ V +E A K +++ S T Q V +KYG A EAT +D
Sbjct: 533 STLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGHTAGEATHNAVD 592
Query: 402 AAGHAIGTAW 411
+A + TA+
Sbjct: 593 SAINVGVTAY 602
>sp|Q8N0X7|SPG20_HUMAN Spartin OS=Homo sapiens GN=SPG20 PE=1 SV=1
Length = 666
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 243 DYSGTAAKLIAAGSGQLIRGILWCGEVTVDRLKWGNKVLKKRMIPGETS-EVSPQTLKRI 301
++S A I +G+ + G++ E+T ++ G L++R+ P E EVSP K +
Sbjct: 418 EWSEKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGL 477
Query: 302 KRAKRVTKMTEKVATGVLSGVVKVSGFFTSSVAN--TKAGKKFF-----------NLLPG 348
AK+ T KV+ ++ GV V+ +A K G K + L G
Sbjct: 478 YIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDKDGKSPLDG 537
Query: 349 EIVLA--SLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKAAEATSEGLDAAGHA 406
+V+A S+ GF+ V +E A K +++ S T Q V +KYG A EAT +D+A +
Sbjct: 538 AMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNV 597
Query: 407 IGTAW 411
TA+
Sbjct: 598 GVTAY 602
>sp|Q8R1X6|SPG20_MOUSE Spartin OS=Mus musculus GN=Spg20 PE=2 SV=1
Length = 671
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 243 DYSGTAAKLIAAGSGQLIRGILWCGEVTVDRLKWGNKVLKKRMIPGETS-EVSPQTLKRI 301
++S A I +G+ + G++ E T ++ G L++R+ P E EVSP + +
Sbjct: 422 EWSEKVAHNILSGASWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPAVTRGL 481
Query: 302 KRAKRVTKMTEKVATGVLSGVVKVSGFFTSSVAN--TKAGKKFF-----------NLLPG 348
AK+ T KV+ ++ GV V+ +A K G K + L G
Sbjct: 482 YIAKQATGGAAKVSQLLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKRDKDGKSALDG 541
Query: 349 EIVLA--SLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKAAEATSEGLDAAGHA 406
+V+A S+ GF+ V +E A K +++ S T Q V +KYG A EAT +D+ A
Sbjct: 542 AMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGHNAGEATHNAVDS---A 598
Query: 407 IGTAWAAFKI 416
I A+ I
Sbjct: 599 INVGLTAYNI 608
>sp|Q9HD40|SPCS_HUMAN O-phosphoseryl-tRNA(Sec) selenium transferase OS=Homo sapiens
GN=SEPSECS PE=1 SV=2
Length = 501
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 12/201 (5%)
Query: 71 PSAPPQADEETLIKVPGAILHLIDQSYSVELACSDFKIIRLIQDGNVV----AVLASVGD 126
P P + +E +I I H+++ +Y V+ + K + LIQ G V A + S+
Sbjct: 229 PRVPDRLEELAVICANYDIPHIVNNAYGVQSS----KCMHLIQQGARVGRIDAFVQSLDK 284
Query: 127 EVQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIASKGQEKLLQELDGI 186
P+ I A D S +P + ++ D+L L++ S G +KLL+E +
Sbjct: 285 NFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEM 344
Query: 187 LQQYSCFSVQKVSEKVKEIDGEIAKEVTPLEMTGKKREVMEEKSAAYWTTLAPNVEDYSG 246
Y ++K+SE E L MT K + +K+ T L +
Sbjct: 345 F-SYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAV---TQLGSMLFTRQV 400
Query: 247 TAAKLIAAGSGQLIRGILWCG 267
+ A+++ GS Q + G + G
Sbjct: 401 SGARVVPLGSMQTVSGYTFRG 421
>sp|Q5RAK7|SPCS_PONAB O-phosphoseryl-tRNA(Sec) selenium transferase OS=Pongo abelii
GN=SEPSECS PE=2 SV=1
Length = 501
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 12/201 (5%)
Query: 71 PSAPPQADEETLIKVPGAILHLIDQSYSVELACSDFKIIRLIQDGNVV----AVLASVGD 126
P P + +E +I I H+++ +Y V+ + K + LIQ G V A + S+
Sbjct: 229 PRVPDRLEELAVICANYGIPHIVNNAYGVQSS----KCMHLIQQGARVGRIDAFVQSLDK 284
Query: 127 EVQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIASKGQEKLLQELDGI 186
P+ I A D +P + ++ D+L L++ S G KLL+E +
Sbjct: 285 NFMVPVGGAIIAGFNDSFIQEIGKMYPGRASASPSLDVLITLLSLGSNGYRKLLKERKEM 344
Query: 187 LQQYSCFSVQKVSEKVKEIDGEIAKEVTPLEMTGKKREVMEEKSAAYWTTLAPNVEDYSG 246
Y ++K+SE E L MT K + +K+ T L +
Sbjct: 345 F-SYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHHDKAV---TQLGSMLFTRQV 400
Query: 247 TAAKLIAAGSGQLIRGILWCG 267
+ A+++ GS Q + G + G
Sbjct: 401 SGARVVPLGSVQTVSGYTFRG 421
>sp|Q8BV57|SRCRL_MOUSE Soluble scavenger receptor cysteine-rich domain-containing protein
SSC5D OS=Mus musculus GN=Ssc5d PE=1 SV=1
Length = 1371
Score = 36.6 bits (83), Expect = 0.46, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 2 SYQQPIPNPNHTSLYPQVI---DSNPEAPINYKSQSP-PSSSQSPPSNLYPSLDMRDLTE 57
S+ IP N TS YP + +NP+ P +SP P++S PP+N +PS TE
Sbjct: 1122 SHPTSIPQLNTTS-YPTIAPQPTTNPQQP-----RSPHPATSPQPPTNTHPSSTPATPTE 1175
Query: 58 NLFPETAATGNTEPSAPPQADEETLIKVP 86
+L P + T + P+ P E T + P
Sbjct: 1176 SL-PSSRKTELSSPTKPRLNSELTFEEAP 1203
>sp|Q28EN2|SPCS_XENTR O-phosphoseryl-tRNA(Sec) selenium transferase OS=Xenopus tropicalis
GN=sepsecs PE=2 SV=1
Length = 506
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
Query: 57 ENLFPETAATGNTEPSAPPQADEETLIKVPGAILHLIDQSYSVELACSDFKIIRLIQDGN 116
EN+ + T P P + +E +I I H+++ +Y V+ + K + LIQ G
Sbjct: 215 ENILCVHSTTSCFAPRVPDRVEELAVICKKYEIPHVVNNAYGVQSS----KCMHLIQQGA 270
Query: 117 VV----AVLASVGDEVQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIA 172
V A + S+ P+ + A D S +P + ++ D+L L++
Sbjct: 271 RVGRIDAFVQSLDKNFMVPVGGAVIAGFSDSFVQEISKMYPGRASASPSLDVLITLLSLG 330
Query: 173 SKGQEKLLQELDGILQQYSCFSVQKVSEKVKEIDGEIAKEVTPLEMTGKKREVMEEKSAA 232
+ G KLL+E + Y ++K+++++ E E P+ + + E+ +A
Sbjct: 331 ASGYNKLLKERKEMF-VYLSSELKKLAKELNERLLETPH--NPISLALSLTSLSEQSGSA 387
Query: 233 YWTTLAPNVEDYSGTAAKLIAAGSGQLIRGILWCG 267
T L + + A+++ G+ Q I G ++ G
Sbjct: 388 V-TQLGSMLFTRQVSGARVVPLGTSQTINGYVFKG 421
>sp|Q38VD0|GATB_LACSS Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=gatB
PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 304 AKRVTKMTEKVA-----TGVLSGVVKVSGFFTSSVANTKAGKKFFNLLPGEI 350
AKR T+ +++ GVL+ ++S FF ++VAN A K+ N L GE+
Sbjct: 298 AKRRTRYVDELGLPEYDAGVLTNTKEMSDFFEAAVANGAAPKQVSNWLMGEV 349
>sp|Q9ZVX4|U90A1_ARATH UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana GN=UGT90A1
PE=2 SV=1
Length = 478
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 197 KVSEKVKEIDGEIAKEVTPLEMTGKKREVMEEKSAAYWTTLAPNVEDYSGTAAKLIAAGS 256
KV +V+ DG + VT E++GK +E+ME ++ T NV++YS A + G+
Sbjct: 397 KVGVRVETEDGSVKGFVTREELSGKIKELMEGETGK---TARKNVKEYSKMAKAALVEGT 453
Query: 257 G 257
G
Sbjct: 454 G 454
>sp|Q9VN45|Y2001_DROME Uncharacterized protein CG12001 OS=Drosophila melanogaster
GN=CG12001 PE=1 SV=1
Length = 553
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 350 IVLASLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKAAEATSEGLDAAGHAIGT 409
I +++G + V D +E + K + S+ S + +++ HKYG++ S D G+
Sbjct: 440 IAAGAVEGVSTVFDGLETSAKILGSSLSENSVKIIEHKYGQQTGNLASGTFDTVGN---- 495
Query: 410 AWAAFKIRKALNPKSVLKPTTLAKSAAKAASE 441
F + + +N + P +AK K E
Sbjct: 496 ---VFVVSQNVN---YITPKGIAKKMVKRTGE 521
>sp|Q803A7|SPCS_DANRE O-phosphoseryl-tRNA(Sec) selenium transferase OS=Danio rerio
GN=sepsecs PE=2 SV=1
Length = 490
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 57 ENLFPETAATGNTEPSAPPQADEETLIKVPGAILHLIDQSYSVELACSDFKIIRLIQDGN 116
EN + T P P + +E +++ I H+++ +Y V+ + K + LIQ G
Sbjct: 215 ENTLCVHSTTSCFAPRVPDRLEELSVLCAKHDIPHIVNNAYGVQPS----KCMHLIQQGA 270
Query: 117 VV----AVLASVGDEVQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIA 172
V A + S+ P+ I A ++ S +P + ++ D+L LT+
Sbjct: 271 RVGRIDAFVQSLDKNFVVPVGGAIIAGFDENFIQEISKIYPGRASASPSLDVLITLLTLG 330
Query: 173 SKGQEKLL---QELDGILQQ 189
+ G +KLL +EL G L Q
Sbjct: 331 ANGYKKLLADRKELYGHLAQ 350
>sp|A5IMS4|METE_THEP1 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=metE PE=3 SV=1
Length = 735
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 274 LKWGNKVLKKRMIPGETSEVSPQTLKRIKRAKRVTKMTEKVATGVLSGVVKVSGF 328
L +G++ + +I G S P TLK I A+ +TEK G+L+G + + G+
Sbjct: 488 LSYGSRCYRPPIIYGTVSRTGPMTLKEITYAQ---SLTEKPVKGMLTGPITIMGW 539
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,512,090
Number of Sequences: 539616
Number of extensions: 6546310
Number of successful extensions: 18367
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 18302
Number of HSP's gapped (non-prelim): 107
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)