Query 013133
Match_columns 449
No_of_seqs 153 out of 187
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 00:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2709 Uncharacterized conser 100.0 8.1E-64 1.7E-68 506.5 12.6 395 14-448 112-539 (560)
2 PF06911 Senescence: Senescenc 100.0 4.8E-42 1E-46 319.4 11.0 164 251-416 1-173 (179)
3 PF12634 Inp1: Inheritance of 98.5 5.7E-07 1.2E-11 82.2 9.8 85 97-194 56-144 (145)
4 PF06911 Senescence: Senescenc 64.4 13 0.00028 34.8 5.1 35 243-277 4-38 (179)
5 PF11531 CARM1: Coactivator-as 55.4 1.2E+02 0.0027 27.0 9.3 90 85-191 7-103 (114)
6 PF08400 phage_tail_N: Prophag 52.6 43 0.00094 30.7 6.2 64 97-191 49-114 (134)
7 PF08553 VID27: VID27 cytoplas 39.8 2.5E+02 0.0054 32.9 11.2 107 79-191 13-154 (794)
8 KOG2709 Uncharacterized conser 31.0 37 0.00079 36.8 2.6 116 247-392 317-435 (560)
9 PF08553 VID27: VID27 cytoplas 30.5 7.1E+02 0.015 29.3 12.8 102 79-190 246-351 (794)
10 PF10709 DUF2511: Protein of u 24.9 38 0.00082 28.9 1.2 26 123-150 6-31 (87)
No 1
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.1e-64 Score=506.52 Aligned_cols=395 Identities=22% Similarity=0.271 Sum_probs=306.0
Q ss_pred CCCccccCCCCCCCCCCCCCCCC--CCCCCCCCCCCCcccccccccccCCCCc-----C-CCCCCCCCCCCcccceeEee
Q 013133 14 SLYPQVIDSNPEAPINYKSQSPP--SSSQSPPSNLYPSLDMRDLTENLFPETA-----A-TGNTEPSAPPQADEETLIKV 85 (449)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~ee~Ll~I 85 (449)
.+||+.+..-|..... +|+.- .-+.+-.|..|..+.-. |++-+--.+. + -+....+++.+... +|++|
T Consensus 112 k~~~E~~~krpPllae--nPstqyg~~N~sgAPktYrelAAg-lrellavrdakvlldE~~R~q~~~~~~e~~g-~i~~i 187 (560)
T KOG2709|consen 112 KKIKEAEEKRPPLLAE--NPSTQYGVENESGAPKTYRELAAG-LRELLAVRDAKVLLDEAIRMQLDSFGSEEAG-LIYFI 187 (560)
T ss_pred hhhhccCcccCccccc--CcchhhccccccCCCcccchhhhh-hhhhhccchhHHHHHHHHHhhccCcCccccc-eEEEc
Confidence 4677777765532221 12100 01113357889887433 3333221110 0 01233445555544 89999
Q ss_pred c-CeEEEEecCCccee-ecCcceEEEEEecCCc-----ceEEEEEecCceeecccCC-CceeecCCeeeEEeCCCCCCCC
Q 013133 86 P-GAILHLIDQSYSVE-LACSDFKIIRLIQDGN-----VVAVLASVGDEVQWPLTKD-IAAVKLDDSHYFFSLSFPPQPG 157 (449)
Q Consensus 86 P-Gaql~lV~~~~sV~-la~G~L~Ivri~q~~~-----~~a~fl~Vgd~~~wPL~kd-~Pvlk~d~~~Y~F~~~~~~~~~ 157 (449)
| |+|+|+|++.+.+- .+|++|+|+||.|... +..+|+|||| |.|||+++ +||++++.|+|+|||++++.||
T Consensus 188 p~gvq~f~V~~~~~~ap~~p~yL~i~rF~q~S~~~~~n~~~af~qv~~-WlYPLvp~~tpvl~~e~GAy~fpd~~~q~pg 266 (560)
T KOG2709|consen 188 PEGVQLFTVDGEKTTAPTAPTYLQILRFPQPSDGGASNDTLAFMQVGP-WLYPLVPAKTPVLRNEFGAYLFPDPTPQNPG 266 (560)
T ss_pred cCCeEEEEeccccccCCCCCceeEEEEecCCCCCccccCCcccceecc-cccccCcccCcceecccceEecCCCcccCCC
Confidence 9 99999999994443 6799999999998773 4679999998 99999999 9999999999999999999998
Q ss_pred CCCCCCceeeeeeccCcccH-HHHHHHHHHHhhhccccccccccccccccccccccccccccccchhhhhHHhhhhhhhh
Q 013133 158 SNSDSDLLNYGLTIASKGQE-KLLQELDGILQQYSCFSVQKVSEKVKEIDGEIAKEVTPLEMTGKKREVMEEKSAAYWTT 236 (449)
Q Consensus 158 ~~~~g~~LsyGlt~~~~~~~-~~l~~fd~iL~~~s~f~~~~~~~~~~~~d~~~~~~~~P~~~~~~~~e~~ee~~~~~w~~ 236 (449)
.+ +||.|.++.++ ...++||.+|+.++||..+........++. |.. .-.-
T Consensus 267 ~~-------vgi~Lsse~Q~~r~~~Ele~~~q~f~D~le~a~~~tv~ql~~-------~n~---------------qRag 317 (560)
T KOG2709|consen 267 MT-------VGILLSSEIQERRLIEELEIVLQEFTDFLEQAEPSTVLQLEE-------KNR---------------QRAG 317 (560)
T ss_pred CE-------EEEEEcchhhhhhhHHHHHHHHHHHHHHHHhhCCcceeeccc-------ccc---------------cccc
Confidence 65 89999988854 467889999999999987642221100110 000 0001
Q ss_pred cCCCcccchHHHHHHHHhhHHHHHHHHHhhhhHhHHHHhcchhhhhhcCCCCCC-ceeChHHHHHHHHHhhhhhHHHHHH
Q 013133 237 LAPNVEDYSGTAAKLIAAGSGQLIRGILWCGEVTVDRLKWGNKVLKKRMIPGET-SEVSPQTLKRIKRAKRVTKMTEKVA 315 (449)
Q Consensus 237 ~Ap~vedys~~vAk~I~~Ga~~isrGI~~~se~t~~~i~~Ga~~l~~~~~p~~~-~~vsP~t~k~i~r~k~~S~~a~~vS 315 (449)
+|..--.||++|++.|++|+.||+||+++|++.|+++|+++++++|.++.|+++ ++|||.+++++.++|+.|+.+++++
T Consensus 318 lAsDTvS~Se~Vs~~iisga~~iawglv~gae~tg~~v~~~~~~~r~~~~p~~kp~qVsp~V~~sv~~a~k~Th~aa~~~ 397 (560)
T KOG2709|consen 318 LASDTVSISETVSNFIISGAQKIAWGLVTGAERTGSRVEDNGEQYRTTLIPTDKPMQVSPVVKGSVVYAHKGTHKAAAKE 397 (560)
T ss_pred ccccccchHHHHHHHHhhhhhHhhhhhccchhhhhhHHhcCcHhHhhhcCccCCCcccCccccceEEEeeeccchhhHHH
Confidence 233334599999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhhcceeeeeccccc---ccccc----------ccCcccccCCCchhhh--hhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013133 316 TGVLSGVVKVSGFFTS---SVANT----------KAGKKFFNLLPGEIVL--ASLDGFNKVCDAVEVAGKNVMSTSSTVT 380 (449)
Q Consensus 316 ~~~l~gV~~vag~v~~---sl~~s----------k~Gk~~~~~~~Gev~l--aSl~afstV~dalE~A~k~ll~s~s~aT 380 (449)
.+++++|+.++..+|. ++++. +++|...+.++|.|.+ +++.||+|||+|||.++|+|++++|+.|
T Consensus 398 ~~l~~~v~T~~~~VG~~laph~kkqgskl~q~~fg~dke~~s~~~Gam~iaag~V~GvsTVw~gLE~~ak~l~~sis~~t 477 (560)
T KOG2709|consen 398 EILKNIVDTKMDKVGDMLAPHGKKQGSKLAQRRFGDDKESGSLVSGAMEIAAGGVTGVSTVWMGLEDGAKHLCRSISNQT 477 (560)
T ss_pred HHHHhhhhHHHHHHHHhhhhhhHHHhhHHHHHhhcCCccCCCcccceeeeecccccchhHHHhhhhHHHHHHHHhhhHhH
Confidence 9999999998876663 33221 1223233678998765 4999999999999999999999999999
Q ss_pred hhHhhhccchhHHHHHHhhhhhhhhhHHhHHHHHhhhhhcCcccccccchHHHHHHHHHHHHhccccC
Q 013133 381 TQLVSHKYGEKAAEATSEGLDAAGHAIGTAWAAFKIRKALNPKSVLKPTTLAKSAAKAASEVKGKKSS 448 (449)
Q Consensus 381 t~vV~HKYG~~AGevT~d~l~aagnv~~tAw~~~kI~k~lgpkai~K~t~~aK~a~ka~~~~~~~~~~ 448 (449)
+++|+||||++||++||++|+++|||+.+| ++|+ ++|||+++|++ ||+||++|+.||++...
T Consensus 478 Vq~v~~KYG~~ag~~thha~d~agnv~v~a---~n~n-~igpk~vakkm--a~~tG~~~vsDykr~~r 539 (560)
T KOG2709|consen 478 VQNVKLKYGDDAGDTTHHALDAAGNVTVAA---ANLN-DIGPKSVAKKM--ARKTGIQMVSDYKRHSR 539 (560)
T ss_pred hhHhhhhhcccccchhhhhhhhccceEEEe---ehhc-ccCHHHHHHHH--HHHhhHHHHHHHHHhhh
Confidence 999999999999999999999999999995 5556 88999999987 99999999999976543
No 2
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=100.00 E-value=4.8e-42 Score=319.37 Aligned_cols=164 Identities=43% Similarity=0.605 Sum_probs=154.0
Q ss_pred HHHhhHHHHHHHHHhhhhHhHHHHhcchhhhhhcCCCCCC-ceeChHHHHHHHHHhhhhhHHHHHHHHhhcceeeeeccc
Q 013133 251 LIAAGSGQLIRGILWCGEVTVDRLKWGNKVLKKRMIPGET-SEVSPQTLKRIKRAKRVTKMTEKVATGVLSGVVKVSGFF 329 (449)
Q Consensus 251 ~I~~Ga~~isrGI~~~se~t~~~i~~Ga~~l~~~~~p~~~-~~vsP~t~k~i~r~k~~S~~a~~vS~~~l~gV~~vag~v 329 (449)
+|++|+++|+|||+||+++++++|++|+++|+++++|.++ ++|+|+|+++|+++|++|+++++||++++++|+++++++
T Consensus 1 ~I~~Ga~~is~gI~~~s~~~a~~i~~g~~~~~~~~~p~~~p~~vsp~t~~~~~~~~~~s~~a~~vs~~~l~~v~~~~~~v 80 (179)
T PF06911_consen 1 GIASGAGWISRGIVTGSEYTAKGIQKGGEYLRSKIKPNEKPVEVSPSTKKRVRRAKKVSKKAAKVSSKVLNGVGKVAGNV 80 (179)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccccccccC--------cccccCCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhhhccchhHHHHHHhhhh
Q 013133 330 TSSVANTKAG--------KKFFNLLPGEIVLASLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKAAEATSEGLD 401 (449)
Q Consensus 330 ~~sl~~sk~G--------k~~~~~~~Gev~laSl~afstV~dalE~A~k~ll~s~s~aTt~vV~HKYG~~AGevT~d~l~ 401 (449)
+..+.++..+ +.++. ..+ |+++||+||++||||||.|+|+|+++++++|+++|+||||++|||+|+|+|+
T Consensus 81 g~~l~~~~~~~~~~~~~~~~~~~-~~~-v~~~s~~a~~tV~~gle~a~k~l~~s~~~~t~~vV~hkYG~~Ag~~t~~~~~ 158 (179)
T PF06911_consen 81 GSKLAKSVKGKGSDGKDNKKFDG-ARP-VANASLDAFSTVWDGLEEAGKILLSSTSDATVDVVEHKYGEEAGEVTQDSLG 158 (179)
T ss_pred HHHHhhcccCCCCCcccCCcccc-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999877666 44332 222 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhHHHHHhh
Q 013133 402 AAGHAIGTAWAAFKI 416 (449)
Q Consensus 402 aagnv~~tAw~~~kI 416 (449)
++|||++|||++++|
T Consensus 159 ~~gnv~~ta~~v~~i 173 (179)
T PF06911_consen 159 TAGNVGLTAWNVRKI 173 (179)
T ss_pred hhhhHHHHHhhhhcc
Confidence 999999999999877
No 3
>PF12634 Inp1: Inheritance of peroxisomes protein 1; InterPro: IPR024758 Inp1 is a peroxisomal membrane protein that binds Pex25p, Pex30p, and Vps1p, all of which are involved in controlling peroxisome division. The levels of Inp1p vary with the cell cycle, and Inp1 acts as a factor that retains peroxisomes in cells and controls peroxisome division []. Inp1p promotes the retention of peroxisomes in mother cells and buds of budding yeast by attaching peroxisomes to as-yet-unidentified cortical structures [].; GO: 0045033 peroxisome inheritance, 0005780 extrinsic to intraperoxisomal membrane
Probab=98.52 E-value=5.7e-07 Score=82.24 Aligned_cols=85 Identities=13% Similarity=0.341 Sum_probs=69.3
Q ss_pred cceeecCcceEEEEEecCCcceEEEEEecCceeecccCCCceeec--CCeeeEEeCCCCCCCCCCCCCCceeeeeecc--
Q 013133 97 YSVELACSDFKIIRLIQDGNVVAVLASVGDEVQWPLTKDIAAVKL--DDSHYFFSLSFPPQPGSNSDSDLLNYGLTIA-- 172 (449)
Q Consensus 97 ~sV~la~G~L~Ivri~q~~~~~a~fl~Vgd~~~wPL~kd~Pvlk~--d~~~Y~F~~~~~~~~~~~~~g~~LsyGlt~~-- 172 (449)
....++.|.|+|+++... ..+||++|+.|.|||.|-.+|.++ +.+.|+++++-|+. | +-|.|+
T Consensus 56 ~~~~~a~G~leIyqi~~~---~v~fLs~G~~~v~PiLPK~q~~~vd~~~~kFvl~~~nPer---Y-------wrIe~~~~ 122 (145)
T PF12634_consen 56 TERLLAHGPLEIYQIPGS---DVAFLSCGGSIVHPILPKLQCWRVDGESSKFVLPIRNPER---Y-------WRIEFLSS 122 (145)
T ss_pred ceeEEecCCEEEEEecCC---ceeeeecCchheecccccccEEEEcCCCcEEEEEcCCCCc---E-------EEEEecCC
Confidence 445588999999999877 359999994499999999999999 56679999876642 2 555555
Q ss_pred CcccHHHHHHHHHHHhhhcccc
Q 013133 173 SKGQEKLLQELDGILQQYSCFS 194 (449)
Q Consensus 173 ~~~~~~~l~~fd~iL~~~s~f~ 194 (449)
.+.+.+.+++|+.+|++.+.|.
T Consensus 123 ~~e~~~~i~~l~~vl~~i~~y~ 144 (145)
T PF12634_consen 123 TDEDKEVIEELESVLSKICQYE 144 (145)
T ss_pred ChhHHHHHHHHHHHHHHHheec
Confidence 4567889999999999999885
No 4
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=64.43 E-value=13 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=30.8
Q ss_pred cchHHHHHHHHhhHHHHHHHHHhhhhHhHHHHhcc
Q 013133 243 DYSGTAAKLIAAGSGQLIRGILWCGEVTVDRLKWG 277 (449)
Q Consensus 243 dys~~vAk~I~~Ga~~isrGI~~~se~t~~~i~~G 277 (449)
..++.++++|+.++++++++|-++++++-+.+...
T Consensus 4 ~Ga~~is~gI~~~s~~~a~~i~~g~~~~~~~~~p~ 38 (179)
T PF06911_consen 4 SGAGWISRGIVTGSEYTAKGIQKGGEYLRSKIKPN 38 (179)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhhCCCC
Confidence 35678999999999999999999999999887653
No 5
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=55.45 E-value=1.2e+02 Score=27.03 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=54.0
Q ss_pred ecCeEEEEecCC-cceeecC--cceEEEEEecCCcceEEEEE----ecCceeecccCCCceeecCCeeeEEeCCCCCCCC
Q 013133 85 VPGAILHLIDQS-YSVELAC--SDFKIIRLIQDGNVVAVLAS----VGDEVQWPLTKDIAAVKLDDSHYFFSLSFPPQPG 157 (449)
Q Consensus 85 IPGaql~lV~~~-~sV~la~--G~L~Ivri~q~~~~~a~fl~----Vgd~~~wPL~kd~Pvlk~d~~~Y~F~~~~~~~~~ 157 (449)
.|||+|-.|.+. |.+.... -.|++.--.+.+..- ..+. +|= +.+++.+|+-+=++....|+|++ +.
T Consensus 7 f~gv~l~s~~d~~gei~~~~~~q~l~LeV~~~~e~a~-l~i~~~~~~cv-fkc~VsreTEccRVG~~SfliTl---g~-- 79 (114)
T PF11531_consen 7 FPGVRLLSIGDANGEIQRHSEQQPLKLEVRRVSEAAQ-LTISDGECVCV-FKCTVSRETECCRVGKQSFLITL---GC-- 79 (114)
T ss_dssp EEEEEEEEEE-TTSS-EECEEEEEEEEEEEE-SSEEE-EEEE-TT--EE-EEEEEETTSEEEEETTTEEEEEE---TT--
T ss_pred cCCeEEEEeccCcchhhhhccCCceEEEEEecCccee-eEEecCCCEEE-EEEEEcCCcceeEecceEEEEEe---cC--
Confidence 479988887665 7777552 122221111221111 1111 222 78999999999999999999997 11
Q ss_pred CCCCCCceeeeeeccCcccHHHHHHHHHHHhhhc
Q 013133 158 SNSDSDLLNYGLTIASKGQEKLLQELDGILQQYS 191 (449)
Q Consensus 158 ~~~~g~~LsyGlt~~~~~~~~~l~~fd~iL~~~s 191 (449)
-+.=|+|++ ..+...|..+|+.+-
T Consensus 80 -------nSlLl~F~s---~~df~~F~n~lk~cr 103 (114)
T PF11531_consen 80 -------NSLLLQFAS---PADFSSFHNILKRCR 103 (114)
T ss_dssp -------EEEEEE-SS---HHHHHHHHHHHCCCT
T ss_pred -------CeEEEEecC---HHHHHHHHHHHHHHh
Confidence 345566875 456788888888774
No 6
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=52.58 E-value=43 Score=30.66 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=36.1
Q ss_pred cceeecCcceEEEEEecCCcceEEEEEecCceeecccCCCceeecCCeeeEEeCCCCCCCCCCCCCCceeeeeecc--Cc
Q 013133 97 YSVELACSDFKIIRLIQDGNVVAVLASVGDEVQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIA--SK 174 (449)
Q Consensus 97 ~sV~la~G~L~Ivri~q~~~~~a~fl~Vgd~~~wPL~kd~Pvlk~d~~~Y~F~~~~~~~~~~~~~g~~LsyGlt~~--~~ 174 (449)
+++.+.||..++....++.. +.+||+ ..+..+-.| | .||.=|..+ .+
T Consensus 49 Ys~~~epG~Y~V~l~~~g~~----~~~vG~------------------I~V~~dS~p---G------TLN~fL~~~~e~d 97 (134)
T PF08400_consen 49 YSFDVEPGVYRVTLKVEGRP----PVYVGD------------------ITVYEDSKP---G------TLNDFLTAPDEDD 97 (134)
T ss_pred EEEEecCCeEEEEEEECCCC----ceeEEE------------------EEEecCCCC---C------cHHHHhhcccccc
Confidence 56666777777766665542 455555 223333111 1 244433433 56
Q ss_pred ccHHHHHHHHHHHhhhc
Q 013133 175 GQEKLLQELDGILQQYS 191 (449)
Q Consensus 175 ~~~~~l~~fd~iL~~~s 191 (449)
..++.|++||.+-.+-.
T Consensus 98 l~Pevlk~fe~m~~~a~ 114 (134)
T PF08400_consen 98 LRPEVLKRFEEMVAQAA 114 (134)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67788888888877654
No 7
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=39.84 E-value=2.5e+02 Score=32.90 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=65.5
Q ss_pred cceeEeecCeEEEEec-CC---ccee-ec-CcceEEEEEecCCcceEEEEEe---------------------------c
Q 013133 79 EETLIKVPGAILHLID-QS---YSVE-LA-CSDFKIIRLIQDGNVVAVLASV---------------------------G 125 (449)
Q Consensus 79 ee~Ll~IPGaql~lV~-~~---~sV~-la-~G~L~Ivri~q~~~~~a~fl~V---------------------------g 125 (449)
.++|+.||-=||||+- +. ++.+ +. -..++|-|..+...=-.+|-|| -
T Consensus 13 ~~eli~IP~GqlyL~Rsp~SpKg~~EcIynDA~asIRrT~~~f~YQLvV~RvyeegE~el~~~ed~eDd~~s~~s~~s~~ 92 (794)
T PF08553_consen 13 KEELISIPSGQLYLVRSPQSPKGSSECIYNDAAASIRRTGQEFQYQLVVQRVYEEGEEELDDEEDDEDDEISADSLQSKK 92 (794)
T ss_pred chhEEEecCCcEEEEecCCCCCcceeeeecceeeeeEecCCCceEEEEEEEecccccccccccccccccchhhhccccCc
Confidence 6799999988999998 43 4444 22 3445555544222211122222 2
Q ss_pred CceeecccCC-Cceee-cCCeeeEEeCCCCCCCCCCCCCCceeeeeeccCcccHHHHHHHHHHHhhhc
Q 013133 126 DEVQWPLTKD-IAAVK-LDDSHYFFSLSFPPQPGSNSDSDLLNYGLTIASKGQEKLLQELDGILQQYS 191 (449)
Q Consensus 126 d~~~wPL~kd-~Pvlk-~d~~~Y~F~~~~~~~~~~~~~g~~LsyGlt~~~~~~~~~l~~fd~iL~~~s 191 (449)
|+|.|+|..+ .-... -+.|...|.-.- ..|+ .|+. |.....+..+...++.|+.++-+|-
T Consensus 93 dE~~FlldE~L~fr~~~~~~G~~vlaWrD--l~GD--~gd~--fEFV~d~~v~~~~v~~F~~~~y~C~ 154 (794)
T PF08553_consen 93 DEWTFLLDESLHFRKEWREGGEKVLAWRD--LSGD--EGDL--FEFVCDSDVPLSDVEQFELTAYRCQ 154 (794)
T ss_pred ceEEEECccccceeEEecCCCcEEEEEeC--CCCC--CCce--EEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 3588888877 22222 334777777542 2222 3433 7778878889999999999998873
No 8
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.99 E-value=37 Score=36.82 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=73.9
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHhHHHHhcchhhhhhcCCCCCC---ceeChHHHHHHHHHhhhhhHHHHHHHHhhccee
Q 013133 247 TAAKLIAAGSGQLIRGILWCGEVTVDRLKWGNKVLKKRMIPGET---SEVSPQTLKRIKRAKRVTKMTEKVATGVLSGVV 323 (449)
Q Consensus 247 ~vAk~I~~Ga~~isrGI~~~se~t~~~i~~Ga~~l~~~~~p~~~---~~vsP~t~k~i~r~k~~S~~a~~vS~~~l~gV~ 323 (449)
.+|+--++++.++++.|+.++++++-.|-+|+++--+++..+.. .++-| +.+-+.|+-.+-.+|.
T Consensus 317 glAsDTvS~Se~Vs~~iisga~~iawglv~gae~tg~~v~~~~~~~r~~~~p------------~~kp~qVsp~V~~sv~ 384 (560)
T KOG2709|consen 317 GLASDTVSISETVSNFIISGAQKIAWGLVTGAERTGSRVEDNGEQYRTTLIP------------TDKPMQVSPVVKGSVV 384 (560)
T ss_pred cccccccchHHHHHHHHhhhhhHhhhhhccchhhhhhHHhcCcHhHhhhcCc------------cCCCcccCccccceEE
Confidence 45666777999999999999999999999999987776654322 11111 1222333333322222
Q ss_pred eeeccccccccccccCcccccCCCchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhhhccchhH
Q 013133 324 KVSGFFTSSVANTKAGKKFFNLLPGEIVLASLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKA 392 (449)
Q Consensus 324 ~vag~v~~sl~~sk~Gk~~~~~~~Gev~laSl~afstV~dalE~A~k~ll~s~s~aTt~vV~HKYG~~A 392 (449)
++... .+++ +..+=.=.+.|+..+..-|+.+.--+..--++.+..+||++-
T Consensus 385 -~a~k~--------Th~a---------a~~~~~l~~~v~T~~~~VG~~laph~kkqgskl~q~~fg~dk 435 (560)
T KOG2709|consen 385 -YAHKG--------THKA---------AAKEEILKNIVDTKMDKVGDMLAPHGKKQGSKLAQRRFGDDK 435 (560)
T ss_pred -Eeeec--------cchh---------hHHHHHHHhhhhHHHHHHHHhhhhhhHHHhhHHHHHhhcCCc
Confidence 11111 1111 000112235677777888999999999999999999999875
No 9
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=30.47 E-value=7.1e+02 Score=29.32 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=59.0
Q ss_pred cceeEeecCeEEEEecCC-cceeecCcceEEEEEecCCcceEEEEEecCc--eeecccCC-CceeecCCeeeEEeCCCCC
Q 013133 79 EETLIKVPGAILHLIDQS-YSVELACSDFKIIRLIQDGNVVAVLASVGDE--VQWPLTKD-IAAVKLDDSHYFFSLSFPP 154 (449)
Q Consensus 79 ee~Ll~IPGaql~lV~~~-~sV~la~G~L~Ivri~q~~~~~a~fl~Vgd~--~~wPL~kd-~Pvlk~d~~~Y~F~~~~~~ 154 (449)
..+++.--.|.||+-|.. +...+.-....+.-+..+.-..|..+.-++. |.=++..+ -|++..+...++|-.....
T Consensus 246 ~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e~lSFiFN~~~~~ 325 (794)
T PF08553_consen 246 AGEILASESAELYLYDPPTGKFVLQDSSVTAKIIETGKWEYWLQIEGKDKIWLGQPVSSDMNPVFNFEHLSFIFNYYTED 325 (794)
T ss_pred ccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEcCCeEEEEEEecCCceEEeeeccCCcCeEEEcceeEEEEEeEcCC
Confidence 333666668899998877 4444443333332222222234444433331 12244455 7888889999999975432
Q ss_pred CCCCCCCCCceeeeeeccCcccHHHHHHHHHHHhhh
Q 013133 155 QPGSNSDSDLLNYGLTIASKGQEKLLQELDGILQQY 190 (449)
Q Consensus 155 ~~~~~~~g~~LsyGlt~~~~~~~~~l~~fd~iL~~~ 190 (449)
|..+++-|-|++. +.+..|..-+.++
T Consensus 326 -------~~~~sw~lkF~~~---~~~~~F~~~~~~~ 351 (794)
T PF08553_consen 326 -------GSAYSWLLKFKDQ---EDYERFQEKFMKC 351 (794)
T ss_pred -------CceEEEEEEeCCH---HHHHHHHHHHHHH
Confidence 4668999999853 4555666555544
No 10
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.89 E-value=38 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=22.9
Q ss_pred EecCceeecccCCCceeecCCeeeEEeC
Q 013133 123 SVGDEVQWPLTKDIAAVKLDDSHYFFSL 150 (449)
Q Consensus 123 ~Vgd~~~wPL~kd~Pvlk~d~~~Y~F~~ 150 (449)
+.|+ .|||+.++-.|.|..++++|-.
T Consensus 6 ~fG~--~Wpft~eev~l~C~~~~alfv~ 31 (87)
T PF10709_consen 6 EFGD--KWPFTVEEVMLECRPGNALFVI 31 (87)
T ss_pred HccC--CCCceeeeEEEEEcCCCEEEEE
Confidence 4565 8999999999999999999985
Done!