Query 013133
Match_columns 449
No_of_seqs 153 out of 187
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 04:49:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013133.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013133hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crfa1 b.55.1.3 (A:8-144) Ran 62.5 34 0.0025 27.4 10.7 102 78-189 18-128 (137)
2 d1mkea1 b.55.1.4 (A:31-144) Ac 26.3 1.3E+02 0.0094 23.1 8.1 74 88-176 18-98 (114)
3 d1t98a1 a.4.5.65 (A:8-118) Chr 17.5 14 0.00099 29.4 0.1 43 346-388 36-79 (111)
4 d1jyoe_ d.184.1.2 (E:) Virulen 15.5 42 0.0031 25.9 2.6 78 353-446 25-102 (102)
5 d2uubs1 d.28.1.1 (S:2-81) Ribo 11.7 28 0.002 26.1 0.5 12 380-391 62-73 (80)
6 d2gy9s1 d.28.1.1 (S:2-80) Ribo 10.8 31 0.0023 25.7 0.5 11 380-390 61-71 (79)
7 d1v8ca2 d.129.5.1 (A:88-165) M 10.0 1.5E+02 0.011 21.1 4.1 31 79-112 27-57 (78)
8 d1a87a_ f.1.1.1 (A:) Colicin N 8.9 2.2E+02 0.016 25.6 5.8 51 354-404 82-140 (297)
9 d2hzaa1 a.43.1.3 (A:1-48) Nick 8.1 1.3E+02 0.0094 20.1 2.8 21 167-191 4-24 (48)
10 d1vlfn1 b.3.5.1 (N:196-274) Tr 7.3 1.5E+02 0.011 21.0 3.2 31 84-114 14-48 (79)
No 1
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.54 E-value=34 Score=27.39 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=61.9
Q ss_pred ccceeEeecCeEEEEecCC--cceeecCcceEEEEEecCCcc---eEEEEEecCc----eeecccCCCceeecCCeeeEE
Q 013133 78 DEETLIKVPGAILHLIDQS--YSVELACSDFKIIRLIQDGNV---VAVLASVGDE----VQWPLTKDIAAVKLDDSHYFF 148 (449)
Q Consensus 78 ~ee~Ll~IPGaql~lV~~~--~sV~la~G~L~Ivri~q~~~~---~a~fl~Vgd~----~~wPL~kd~Pvlk~d~~~Y~F 148 (449)
.|+.|+.+. |.||..|.+ +-.+..-|.|+|.+....+.. ...++|-... +--+|.++.++-+.+..+..|
T Consensus 18 ~E~~l~~~r-~KL~~fd~~~~~WkerG~G~lkl~~~k~~~~~t~k~RlvmR~~~~~kv~lN~~i~~~m~~~~~~~k~v~~ 96 (137)
T d2crfa1 18 AESNVLQMQ-CKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHI 96 (137)
T ss_dssp CCEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEE
T ss_pred CcEEEEEEE-EEEEEEeCCCCcCcccCEEEEEEEEEeccCCCCceEEEEEEECCCCeEEEeCEECCCCccccCCCCEEEE
Confidence 367888887 899988743 667788999999887765432 3355553321 334566776666666777788
Q ss_pred eCCCCCCCCCCCCCCceeeeeeccCcccHHHHHHHHHHHhh
Q 013133 149 SLSFPPQPGSNSDSDLLNYGLTIASKGQEKLLQELDGILQQ 189 (449)
Q Consensus 149 ~~~~~~~~~~~~~g~~LsyGlt~~~~~~~~~l~~fd~iL~~ 189 (449)
.-..+++ +.+-.|-+.|..... -+.|+.|-+.
T Consensus 97 ~~~d~~~------~~~~~~li~~~~~~~---~~l~~~i~e~ 128 (137)
T d2crfa1 97 TAMDTED------QGVKVFLISASSKDT---GQLYAALHHR 128 (137)
T ss_dssp EEEBSSS------CCEEEEEEECCHHHH---HHHHHHHHHH
T ss_pred EeecCCC------CceEEEEEEECCHHH---HHHHHHHHHH
Confidence 7533221 223447777764333 3444444433
No 2
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.28 E-value=1.3e+02 Score=23.06 Aligned_cols=74 Identities=9% Similarity=-0.017 Sum_probs=46.9
Q ss_pred eEEEEecCCcc-eeecCcceEEEEEecCCcceEEEEEecCc------eeecccCCCceeecCCeeeEEeCCCCCCCCCCC
Q 013133 88 AILHLIDQSYS-VELACSDFKIIRLIQDGNVVAVLASVGDE------VQWPLTKDIAAVKLDDSHYFFSLSFPPQPGSNS 160 (449)
Q Consensus 88 aql~lV~~~~s-V~la~G~L~Ivri~q~~~~~a~fl~Vgd~------~~wPL~kd~Pvlk~d~~~Y~F~~~~~~~~~~~~ 160 (449)
|+||..++++. .....|.+.+++-.. .-..+|+|=|. |.--|.++.+.-+..+--+.|++. .
T Consensus 18 v~lY~~~~~~~W~~~~tG~v~~v~d~~---~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~~~~Fh~~~~~----~---- 86 (114)
T d1mkea1 18 VQLYAADRNCMWSKKCSGVACLVKDNP---QRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD----T---- 86 (114)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETT---TTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECS----S----
T ss_pred EEEEEECCCCeEEECCceEEEEEEECC---CCeEEEEEEECCCCeEEEEEEccCCcEEeccCCeEEEEEcC----C----
Confidence 78898888755 445578766655432 23366666541 555667777777766667778751 1
Q ss_pred CCCceeeeeeccCccc
Q 013133 161 DSDLLNYGLTIASKGQ 176 (449)
Q Consensus 161 ~g~~LsyGlt~~~~~~ 176 (449)
--+||.|+++..
T Consensus 87 ----~~~GL~F~~~~e 98 (114)
T d1mkea1 87 ----CQVALNFANEEE 98 (114)
T ss_dssp ----SEEEEEESSHHH
T ss_pred ----ceEEEeeCCHHH
Confidence 138999987543
No 3
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.46 E-value=14 Score=29.39 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=36.9
Q ss_pred CCchhhhh-hhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcc
Q 013133 346 LPGEIVLA-SLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKY 388 (449)
Q Consensus 346 ~~Gev~la-Sl~afstV~dalE~A~k~ll~s~s~aTt~vV~HKY 388 (449)
.+||+.-+ =+|+|.-|+++.|++..++..-..++--++|+.|.
T Consensus 36 ~d~e~~E~~LiD~F~~Vs~~feq~~et~~~RANnAINdlv~QRl 79 (111)
T d1t98a1 36 LDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRL 79 (111)
T ss_dssp CSSCBCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTS
T ss_pred hhcccchhHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 35555543 67999999999999999999999999999999886
No 4
>d1jyoe_ d.184.1.2 (E:) Virulence effector SptP domain {Salmonella typhimurium [TaxId: 90371]}
Probab=15.49 E-value=42 Score=25.94 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=45.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhhhccchhHHHHHHhhhhhhhhhHHhHHHHHhhhhhcCcccccccchHH
Q 013133 353 ASLDGFNKVCDAVEVAGKNVMSTSSTVTTQLVSHKYGEKAAEATSEGLDAAGHAIGTAWAAFKIRKALNPKSVLKPTTLA 432 (449)
Q Consensus 353 aSl~afstV~dalE~A~k~ll~s~s~aTt~vV~HKYG~~AGevT~d~l~aagnv~~tAw~~~kI~k~lgpkai~K~t~~a 432 (449)
.-.+++-+-.+.+-.=-+.++. .-......|||+++..++-+..+--+|.=+| ++-+.--|.++
T Consensus 25 Kn~daVqky~e~~r~qNqk~L~----vFl~aLt~ryG~~~a~~a~d~~~~~~~~PLt------------~R~v~qite~v 88 (102)
T d1jyoe_ 25 KNTEVVQKHTENIRVQDQKILQ----TFLHALTEKYGETAVNDALLMSRINMNKPLT------------QRLAVQITECV 88 (102)
T ss_dssp TCHHHHHHHHHHSCCSCHHHHH----HHHHHHHHTTSHHHHHHHHHHHHHCCCCCGG------------GSCEEECCSHH
T ss_pred hhhHHHHHHHHhhhhhhHHHHH----HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcc------------HHHHHHHHHHH
Confidence 3455555554444333333332 2345677899999887766655554554443 33344456778
Q ss_pred HHHHHHHHHHhccc
Q 013133 433 KSAAKAASEVKGKK 446 (449)
Q Consensus 433 K~a~ka~~~~~~~~ 446 (449)
|.|-.-...+++.|
T Consensus 89 k~a~~~f~~~i~~k 102 (102)
T d1jyoe_ 89 KAADEGFINLIKSK 102 (102)
T ss_dssp HHHHTTHHHHHHHC
T ss_pred HHhhhHHHHHhhcC
Confidence 88877777766654
No 5
>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}
Probab=11.68 E-value=28 Score=26.06 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=7.7
Q ss_pred hhhHhhhccchh
Q 013133 380 TTQLVSHKYGEK 391 (449)
Q Consensus 380 Tt~vV~HKYG~~ 391 (449)
+-++|+||+||=
T Consensus 62 t~eMVGhklGEF 73 (80)
T d2uubs1 62 TENMVGHKLGEF 73 (80)
T ss_dssp CGGGTTSBSGGG
T ss_pred ccCcccceeecc
Confidence 446777777763
No 6
>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}
Probab=10.80 E-value=31 Score=25.68 Aligned_cols=11 Identities=55% Similarity=0.915 Sum_probs=6.7
Q ss_pred hhhHhhhccch
Q 013133 380 TTQLVSHKYGE 390 (449)
Q Consensus 380 Tt~vV~HKYG~ 390 (449)
+-++|+||+||
T Consensus 61 t~eMVGhklGE 71 (79)
T d2gy9s1 61 TDEMVGHKLGE 71 (79)
T ss_dssp CGGGTTSBGGG
T ss_pred ccCccceeeec
Confidence 34566666665
No 7
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.98 E-value=1.5e+02 Score=21.11 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=24.3
Q ss_pred cceeEeecCeEEEEecCCcceeecCcceEEEEEe
Q 013133 79 EETLIKVPGAILHLIDQSYSVELACSDFKIIRLI 112 (449)
Q Consensus 79 ee~Ll~IPGaql~lV~~~~sV~la~G~L~Ivri~ 112 (449)
+|-++++||+.|-|-+ .-+|.-|.|+|-|++
T Consensus 27 ~egv~rlpga~vrf~e---~~pl~vgsl~ip~lr 57 (78)
T d1v8ca2 27 GEGVYRLPGAVVRFRE---VEPLKVGSLSIPQLR 57 (78)
T ss_dssp ETTEEEETTEEEEEEE---EEEEEETTEEEEEEE
T ss_pred cceEEecCCeEEEecc---cCCceecceecceEE
Confidence 6789999999998853 334677999998765
No 8
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=8.87 E-value=2.2e+02 Score=25.61 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred hhhhHHHHHH-----HHHHHHHHHHhhhhhhhhh---HhhhccchhHHHHHHhhhhhhh
Q 013133 354 SLDGFNKVCD-----AVEVAGKNVMSTSSTVTTQ---LVSHKYGEKAAEATSEGLDAAG 404 (449)
Q Consensus 354 Sl~afstV~d-----alE~A~k~ll~s~s~aTt~---vV~HKYG~~AGevT~d~l~aag 404 (449)
++.-|-+=|- .=+++.+..++..++-+++ -|..+||+...+++++.-+.++
T Consensus 82 ~vk~~v~~f~~~~kee~~~~Ek~alkdAve~ia~~~kkIsEk~G~Kyk~lA~eLA~~aK 140 (297)
T d1a87a_ 82 LVKRFVSQFLLFRKEEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIK 140 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444443 4556666777777766664 4888999999999999988886
No 9
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.05 E-value=1.3e+02 Score=20.05 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=16.7
Q ss_pred eeeeccCcccHHHHHHHHHHHhhhc
Q 013133 167 YGLTIASKGQEKLLQELDGILQQYS 191 (449)
Q Consensus 167 yGlt~~~~~~~~~l~~fd~iL~~~s 191 (449)
++|++ ++++|+.||.+.++..
T Consensus 4 isVsl----p~~Ll~~lD~~v~~~g 24 (48)
T d2hzaa1 4 VTITL----DDDLLETLDSLSQRRG 24 (48)
T ss_dssp EEEEE----CHHHHHHHHHHHHHTT
T ss_pred EEEec----CHHHHHHHHHHHHHcC
Confidence 56666 5789999999998864
No 10
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=7.32 E-value=1.5e+02 Score=21.02 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=21.3
Q ss_pred eecCeEEEEecCCccee----ecCcceEEEEEecC
Q 013133 84 KVPGAILHLIDQSYSVE----LACSDFKIIRLIQD 114 (449)
Q Consensus 84 ~IPGaql~lV~~~~sV~----la~G~L~Ivri~q~ 114 (449)
.||||.|.|.+++..|. =..|.|++-.+..+
T Consensus 14 ~v~gA~V~L~~~~~~v~~t~Td~~G~F~f~~l~~G 48 (79)
T d1vlfn1 14 CFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNG 48 (79)
T ss_dssp ECTTCEEEEEETTEEEEEEECCTTSEEEEEEECSE
T ss_pred cccccEEEEECCCCeEEeeEECCCCcEEEEecCCC
Confidence 46888888888765443 23788888766655
Done!