Query 013134
Match_columns 449
No_of_seqs 402 out of 2193
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.3 6E-13 2.1E-17 101.8 4.9 51 333-387 12-65 (69)
2 1iym_A EL5; ring-H2 finger, ub 99.3 3.2E-13 1.1E-17 98.6 3.0 47 334-384 4-54 (55)
3 1x4j_A Ring finger protein 38; 99.3 3E-13 1E-17 105.4 2.8 49 333-385 21-72 (75)
4 2ep4_A Ring finger protein 24; 99.3 1.1E-12 3.8E-17 101.8 5.6 50 333-386 13-65 (74)
5 2djb_A Polycomb group ring fin 99.3 1E-12 3.4E-17 101.6 5.0 52 334-389 14-66 (72)
6 1chc_A Equine herpes virus-1 r 99.3 1.1E-12 3.6E-17 100.1 4.9 49 333-385 3-52 (68)
7 2ect_A Ring finger protein 126 99.3 1E-12 3.5E-17 103.1 4.9 51 333-387 13-66 (78)
8 2ecm_A Ring finger and CHY zin 99.3 9E-13 3.1E-17 96.1 3.7 47 334-384 4-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 7.7E-13 2.6E-17 100.9 3.4 49 333-385 13-68 (69)
10 1v87_A Deltex protein 2; ring- 99.3 2.1E-12 7.1E-17 108.8 6.4 53 334-386 24-95 (114)
11 3ng2_A RNF4, snurf, ring finge 99.3 8.2E-13 2.8E-17 101.5 3.5 49 334-386 9-64 (71)
12 2l0b_A E3 ubiquitin-protein li 99.3 6E-13 2E-17 107.9 2.9 48 334-385 39-89 (91)
13 2ecl_A Ring-box protein 2; RNF 99.3 7.9E-13 2.7E-17 104.8 3.4 48 334-385 14-76 (81)
14 2d8t_A Dactylidin, ring finger 99.3 5E-13 1.7E-17 103.1 1.3 50 333-386 13-62 (71)
15 2xeu_A Ring finger protein 4; 99.3 1.3E-12 4.5E-17 98.1 3.2 49 334-386 2-57 (64)
16 4ayc_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 113.4 3.9 48 335-386 53-100 (138)
17 2ecy_A TNF receptor-associated 99.3 2.6E-12 9E-17 97.4 4.4 50 334-386 14-63 (66)
18 2csy_A Zinc finger protein 183 99.2 4.3E-12 1.5E-16 100.3 4.1 48 333-384 13-60 (81)
19 2ysl_A Tripartite motif-contai 99.2 4.2E-12 1.4E-16 98.1 3.7 53 333-386 18-70 (73)
20 3dpl_R Ring-box protein 1; ubi 99.2 4.6E-12 1.6E-16 105.5 4.1 47 334-384 36-100 (106)
21 2yur_A Retinoblastoma-binding 99.2 5.9E-12 2E-16 97.9 4.4 50 334-385 14-64 (74)
22 1t1h_A Gspef-atpub14, armadill 99.2 5.4E-12 1.9E-16 98.9 4.2 50 334-386 7-56 (78)
23 2ecn_A Ring finger protein 141 99.2 2.6E-12 8.9E-17 98.6 1.7 49 334-387 14-62 (70)
24 2ct2_A Tripartite motif protei 99.2 8.8E-12 3E-16 99.7 4.4 53 333-386 13-69 (88)
25 3fl2_A E3 ubiquitin-protein li 99.2 1.7E-11 5.7E-16 104.9 4.5 49 334-385 51-99 (124)
26 2ecv_A Tripartite motif-contai 99.1 3.6E-11 1.2E-15 95.2 5.7 54 333-386 17-72 (85)
27 3lrq_A E3 ubiquitin-protein li 99.1 1.2E-11 4E-16 102.0 2.9 48 335-385 22-70 (100)
28 3ztg_A E3 ubiquitin-protein li 99.1 1.9E-11 6.5E-16 98.8 4.2 50 333-384 11-61 (92)
29 1g25_A CDK-activating kinase a 99.1 2.2E-11 7.7E-16 92.0 4.2 49 335-386 3-56 (65)
30 2ysj_A Tripartite motif-contai 99.1 2.5E-11 8.7E-16 91.0 4.4 46 333-379 18-63 (63)
31 2egp_A Tripartite motif-contai 99.1 8.9E-12 3.1E-16 97.7 2.0 54 333-386 10-66 (79)
32 2ecw_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 95.5 5.1 54 333-386 17-72 (85)
33 2y43_A E3 ubiquitin-protein li 99.1 2.3E-11 7.9E-16 99.8 2.7 48 334-385 21-69 (99)
34 2ckl_A Polycomb group ring fin 99.1 3.3E-11 1.1E-15 100.5 3.6 49 334-386 14-63 (108)
35 2ecj_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 88.1 3.6 46 333-379 13-58 (58)
36 4a0k_B E3 ubiquitin-protein li 99.1 1.3E-11 4.5E-16 104.3 0.3 47 334-384 47-111 (117)
37 1jm7_A BRCA1, breast cancer ty 99.1 1.1E-10 3.6E-15 97.8 5.0 51 335-386 21-71 (112)
38 3l11_A E3 ubiquitin-protein li 99.0 1.7E-11 5.7E-16 103.5 -1.0 48 335-385 15-62 (115)
39 4ap4_A E3 ubiquitin ligase RNF 99.0 7.6E-11 2.6E-15 101.2 2.9 50 334-387 6-62 (133)
40 1z6u_A NP95-like ring finger p 99.0 1.1E-10 3.7E-15 103.3 3.8 49 335-386 78-126 (150)
41 2kr4_A Ubiquitin conjugation f 99.0 1.3E-10 4.5E-15 92.8 3.9 49 334-386 13-61 (85)
42 1rmd_A RAG1; V(D)J recombinati 99.0 6.7E-11 2.3E-15 99.9 2.3 50 334-386 22-71 (116)
43 1e4u_A Transcriptional repress 99.0 3.8E-10 1.3E-14 88.6 6.1 50 334-386 10-63 (78)
44 2d8s_A Cellular modulator of i 99.0 1.9E-10 6.6E-15 90.7 4.2 52 333-386 13-71 (80)
45 2ckl_B Ubiquitin ligase protei 99.0 1.6E-10 5.5E-15 103.8 3.5 48 335-385 54-102 (165)
46 3hct_A TNF receptor-associated 99.0 1.3E-10 4.6E-15 98.5 2.4 49 334-385 17-65 (118)
47 2kre_A Ubiquitin conjugation f 99.0 2E-10 6.9E-15 94.6 3.3 49 334-386 28-76 (100)
48 1bor_A Transcription factor PM 99.0 1.5E-10 5.1E-15 84.9 2.2 46 334-386 5-50 (56)
49 2c2l_A CHIP, carboxy terminus 99.0 6.5E-10 2.2E-14 107.5 7.4 49 334-385 207-255 (281)
50 2ct0_A Non-SMC element 1 homol 98.9 5.6E-10 1.9E-14 86.5 4.5 55 333-389 13-68 (74)
51 1wgm_A Ubiquitin conjugation f 98.9 3.6E-10 1.2E-14 92.8 3.5 49 334-386 21-70 (98)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 2.6E-10 8.9E-15 97.9 2.6 50 333-386 70-126 (133)
53 2vje_B MDM4 protein; proto-onc 98.9 3.2E-10 1.1E-14 85.3 2.6 48 334-385 6-56 (63)
54 2vje_A E3 ubiquitin-protein li 98.9 3.3E-10 1.1E-14 85.5 2.7 48 334-385 7-57 (64)
55 2y1n_A E3 ubiquitin-protein li 98.9 5.7E-10 1.9E-14 112.4 4.0 49 335-386 332-380 (389)
56 3knv_A TNF receptor-associated 98.9 3.3E-10 1.1E-14 99.2 1.2 50 334-386 30-79 (141)
57 1jm7_B BARD1, BRCA1-associated 98.8 8E-10 2.8E-14 93.5 2.2 45 335-385 22-67 (117)
58 2f42_A STIP1 homology and U-bo 98.8 1.9E-09 6.5E-14 97.7 3.3 49 335-386 106-154 (179)
59 4ic3_A E3 ubiquitin-protein li 98.7 1.4E-09 4.7E-14 84.4 0.8 43 335-385 24-67 (74)
60 2ea5_A Cell growth regulator w 98.7 5.9E-09 2E-13 79.6 4.2 46 333-386 13-59 (68)
61 2yu4_A E3 SUMO-protein ligase 98.7 3.2E-09 1.1E-13 86.3 2.2 52 334-385 6-63 (94)
62 3hcs_A TNF receptor-associated 98.7 3.8E-09 1.3E-13 95.1 2.4 49 335-386 18-66 (170)
63 2ecg_A Baculoviral IAP repeat- 98.7 1.2E-08 4.1E-13 79.2 4.3 44 335-386 25-69 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.6E-08 2.6E-12 71.4 3.9 49 334-384 5-58 (60)
65 3htk_C E3 SUMO-protein ligase 98.5 5.9E-08 2E-12 92.2 3.8 51 334-386 180-233 (267)
66 3k1l_B Fancl; UBC, ring, RWD, 98.5 7.7E-08 2.6E-12 94.4 4.2 53 334-386 307-374 (381)
67 2bay_A PRE-mRNA splicing facto 98.4 6.7E-08 2.3E-12 72.0 2.6 49 335-387 3-52 (61)
68 2yho_A E3 ubiquitin-protein li 98.4 5.2E-08 1.8E-12 76.5 1.8 44 335-386 18-62 (79)
69 1wim_A KIAA0161 protein; ring 98.3 2.2E-07 7.5E-12 75.2 3.0 48 335-382 5-61 (94)
70 3t6p_A Baculoviral IAP repeat- 98.3 9.5E-08 3.3E-12 95.4 0.2 44 334-385 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.3E-06 1.1E-10 68.0 3.1 46 337-385 3-49 (101)
72 3nw0_A Non-structural maintena 97.6 3.8E-05 1.3E-09 72.7 4.6 53 335-389 180-233 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.029 9.9E-07 45.1 2.9 32 335-366 3-37 (101)
74 2ko5_A Ring finger protein Z; 93.3 0.038 1.3E-06 43.7 2.3 46 335-386 28-74 (99)
75 2lri_C Autoimmune regulator; Z 92.7 0.061 2.1E-06 40.1 2.6 47 333-382 10-59 (66)
76 3m62_A Ubiquitin conjugation f 91.8 0.21 7.1E-06 55.5 6.5 48 335-386 891-939 (968)
77 2k16_A Transcription initiatio 87.2 0.065 2.2E-06 40.8 -1.4 50 335-384 18-70 (75)
78 1wil_A KIAA1045 protein; ring 86.9 0.48 1.6E-05 36.7 3.3 32 333-365 13-47 (89)
79 1mm2_A MI2-beta; PHD, zinc fin 86.6 0.13 4.6E-06 37.5 0.1 48 333-383 7-57 (61)
80 1f62_A Transcription factor WS 85.8 0.28 9.7E-06 34.2 1.4 45 337-381 2-49 (51)
81 2l5u_A Chromodomain-helicase-D 84.7 0.24 8.3E-06 36.1 0.7 47 333-382 9-58 (61)
82 3u5n_A E3 ubiquitin-protein li 82.7 0.18 6.2E-06 46.2 -1.0 48 333-383 5-55 (207)
83 3o36_A Transcription intermedi 81.4 0.53 1.8E-05 42.1 1.7 47 334-383 3-52 (184)
84 1fp0_A KAP-1 corepressor; PHD 80.0 0.57 2E-05 36.8 1.2 47 333-382 23-72 (88)
85 2yql_A PHD finger protein 21A; 79.9 0.14 4.7E-06 36.7 -2.3 46 333-381 7-55 (56)
86 2cs3_A Protein C14ORF4, MY039 77.9 1.7 5.9E-05 33.2 3.2 46 334-379 14-64 (93)
87 2ro1_A Transcription intermedi 76.8 0.61 2.1E-05 42.0 0.5 49 335-383 2-50 (189)
88 2ysm_A Myeloid/lymphoid or mix 76.8 0.53 1.8E-05 38.5 0.1 48 333-380 5-55 (111)
89 1we9_A PHD finger family prote 75.5 0.33 1.1E-05 35.6 -1.3 49 334-382 5-58 (64)
90 2puy_A PHD finger protein 21A; 75.3 0.28 9.4E-06 35.6 -1.8 47 334-383 4-53 (60)
91 1wen_A Inhibitor of growth fam 75.3 1.5 5.1E-05 32.9 2.3 44 335-382 16-65 (71)
92 3lqh_A Histone-lysine N-methyl 73.4 1.5 5.1E-05 39.3 2.2 49 335-383 2-64 (183)
93 1xwh_A Autoimmune regulator; P 73.1 0.46 1.6E-05 35.1 -1.1 47 333-382 6-55 (66)
94 2e6r_A Jumonji/ARID domain-con 68.9 0.42 1.4E-05 37.9 -2.2 49 334-382 15-66 (92)
95 3v43_A Histone acetyltransfera 68.8 1 3.4E-05 36.9 -0.0 45 337-381 63-111 (112)
96 1weu_A Inhibitor of growth fam 68.1 2.8 9.6E-05 33.1 2.5 43 336-382 37-85 (91)
97 2lbm_A Transcriptional regulat 67.7 3.4 0.00011 35.4 3.1 49 333-381 61-116 (142)
98 2e6s_A E3 ubiquitin-protein li 67.6 1 3.5E-05 34.4 -0.2 46 336-381 27-76 (77)
99 4gne_A Histone-lysine N-methyl 66.1 2.6 8.9E-05 34.3 1.9 52 333-386 13-66 (107)
100 3ask_A E3 ubiquitin-protein li 65.3 1.3 4.4E-05 41.0 -0.0 47 336-382 175-225 (226)
101 3asl_A E3 ubiquitin-protein li 63.4 1.2 4.1E-05 33.3 -0.5 46 337-382 20-69 (70)
102 1wev_A Riken cDNA 1110020M19; 63.1 1.1 3.7E-05 35.2 -0.9 52 334-385 15-75 (88)
103 2vnf_A ING 4, P29ING4, inhibit 62.6 0.96 3.3E-05 32.8 -1.2 43 335-381 10-58 (60)
104 2yt5_A Metal-response element- 62.4 0.74 2.5E-05 33.8 -1.9 51 333-383 4-62 (66)
105 3shb_A E3 ubiquitin-protein li 62.3 0.96 3.3E-05 34.6 -1.3 45 337-381 28-76 (77)
106 2jmi_A Protein YNG1, ING1 homo 62.1 1.3 4.4E-05 35.0 -0.6 45 333-381 24-75 (90)
107 1weo_A Cellulose synthase, cat 61.0 25 0.00085 27.4 6.5 48 334-384 15-69 (93)
108 1joc_A EEA1, early endosomal a 60.8 8 0.00027 32.2 4.1 29 335-363 69-101 (125)
109 1wep_A PHF8; structural genomi 60.6 6.9 0.00023 29.7 3.4 48 335-383 12-64 (79)
110 1zbd_B Rabphilin-3A; G protein 58.6 4.4 0.00015 34.3 2.1 29 333-361 53-86 (134)
111 2gmg_A Hypothetical protein PF 58.5 5.1 0.00018 32.3 2.3 30 346-384 66-95 (105)
112 2kgg_A Histone demethylase jar 58.2 1.2 4.2E-05 31.1 -1.2 44 337-380 4-52 (52)
113 2xb1_A Pygopus homolog 2, B-ce 57.9 3.5 0.00012 33.3 1.3 49 335-383 3-62 (105)
114 3ql9_A Transcriptional regulat 57.2 6.9 0.00024 32.9 3.1 50 333-382 55-111 (129)
115 3v43_A Histone acetyltransfera 51.0 14 0.00048 29.9 3.9 44 334-380 4-62 (112)
116 1vfy_A Phosphatidylinositol-3- 50.9 7.6 0.00026 29.0 2.1 29 335-363 11-43 (73)
117 2d8z_A Four and A half LIM dom 50.2 9.4 0.00032 27.6 2.5 39 335-385 5-43 (70)
118 2ri7_A Nucleosome-remodeling f 50.1 3.5 0.00012 36.2 0.1 48 334-382 7-59 (174)
119 3o70_A PHD finger protein 13; 49.7 2.6 8.8E-05 31.3 -0.7 45 335-381 19-66 (68)
120 2dar_A PDZ and LIM domain prot 49.3 9.3 0.00032 29.3 2.5 40 334-385 24-63 (90)
121 1x62_A C-terminal LIM domain p 49.1 9 0.00031 28.6 2.3 39 334-384 14-52 (79)
122 2d8x_A Protein pinch; LIM doma 49.0 10 0.00036 27.4 2.6 40 335-386 5-44 (70)
123 2cu8_A Cysteine-rich protein 2 48.5 9.9 0.00034 28.0 2.4 39 335-385 9-48 (76)
124 2ysm_A Myeloid/lymphoid or mix 48.3 2.1 7.2E-05 34.8 -1.6 46 337-382 56-104 (111)
125 1wyh_A SLIM 2, skeletal muscle 48.1 13 0.00043 27.0 3.0 39 335-385 5-45 (72)
126 1wem_A Death associated transc 48.1 3.7 0.00013 30.9 -0.1 46 336-382 17-70 (76)
127 2cur_A Skeletal muscle LIM-pro 47.1 12 0.0004 27.0 2.6 39 335-385 5-43 (69)
128 2vpb_A Hpygo1, pygopus homolog 47.0 9.9 0.00034 27.8 2.1 48 334-381 7-65 (65)
129 1nyp_A Pinch protein; LIM doma 46.7 9.2 0.00031 27.3 2.0 39 335-385 5-43 (66)
130 1wee_A PHD finger family prote 46.5 1.9 6.3E-05 32.3 -2.0 46 336-382 17-66 (72)
131 2cor_A Pinch protein; LIM doma 46.4 15 0.0005 27.5 3.2 40 335-386 15-54 (79)
132 2kwj_A Zinc finger protein DPF 46.3 6 0.00021 32.3 1.0 42 336-380 2-59 (114)
133 1wig_A KIAA1808 protein; LIM d 45.8 18 0.00061 26.5 3.5 38 335-384 5-42 (73)
134 1y02_A CARP2, FYVE-ring finger 45.3 2.8 9.7E-05 34.8 -1.2 45 335-383 19-67 (120)
135 1x6a_A LIMK-2, LIM domain kina 45.1 15 0.00052 27.3 3.1 39 335-385 15-53 (81)
136 1x64_A Alpha-actinin-2 associa 45.1 15 0.00052 28.0 3.1 40 335-386 25-64 (89)
137 2lv9_A Histone-lysine N-methyl 44.9 4.2 0.00014 32.4 -0.2 43 337-381 30-75 (98)
138 1x68_A FHL5 protein; four-and- 44.6 16 0.00054 26.9 3.1 39 335-385 5-47 (76)
139 2l43_A N-teminal domain from h 44.0 5.2 0.00018 31.2 0.2 50 333-384 23-77 (88)
140 2o35_A Hypothetical protein DU 43.5 9 0.00031 30.5 1.5 12 357-368 43-54 (105)
141 3fyb_A Protein of unknown func 43.4 9.1 0.00031 30.4 1.5 12 357-368 42-53 (104)
142 1x4l_A Skeletal muscle LIM-pro 43.1 14 0.00048 26.8 2.5 39 335-385 5-47 (72)
143 3c6w_A P28ING5, inhibitor of g 43.1 3 0.0001 30.0 -1.3 43 335-381 9-57 (59)
144 1v6g_A Actin binding LIM prote 42.3 15 0.00052 27.3 2.7 40 335-386 15-54 (81)
145 2zet_C Melanophilin; complex, 42.1 51 0.0017 28.3 6.3 45 334-381 67-116 (153)
146 1z2q_A LM5-1; membrane protein 42.1 12 0.0004 28.7 2.0 30 335-364 21-54 (84)
147 3i2d_A E3 SUMO-protein ligase 41.8 18 0.0006 35.9 3.6 50 335-385 249-300 (371)
148 2kwj_A Zinc finger protein DPF 41.2 1.6 5.4E-05 35.9 -3.4 47 337-383 60-109 (114)
149 1dvp_A HRS, hepatocyte growth 40.7 9.3 0.00032 34.8 1.4 29 335-363 161-193 (220)
150 3t7l_A Zinc finger FYVE domain 40.7 12 0.00043 29.0 2.0 31 335-365 20-54 (90)
151 2jne_A Hypothetical protein YF 40.4 1.6 5.5E-05 34.7 -3.2 42 335-385 32-73 (101)
152 2yw8_A RUN and FYVE domain-con 40.4 13 0.00044 28.4 2.0 30 335-364 19-52 (82)
153 3zyq_A Hepatocyte growth facto 40.0 10 0.00036 34.8 1.6 30 335-364 164-197 (226)
154 4fo9_A E3 SUMO-protein ligase 39.7 20 0.00068 35.3 3.6 50 335-385 215-266 (360)
155 2dlo_A Thyroid receptor-intera 39.3 17 0.00058 27.1 2.5 39 335-385 15-53 (81)
156 2co8_A NEDD9 interacting prote 39.2 24 0.00082 26.5 3.4 41 334-386 14-55 (82)
157 3mpx_A FYVE, rhogef and PH dom 39.0 6.4 0.00022 39.5 0.0 49 335-383 375-430 (434)
158 2g6q_A Inhibitor of growth pro 38.9 3.8 0.00013 29.8 -1.3 43 335-381 11-59 (62)
159 1wfk_A Zinc finger, FYVE domai 38.6 12 0.00041 29.1 1.5 30 335-364 9-42 (88)
160 1x4u_A Zinc finger, FYVE domai 38.6 13 0.00045 28.4 1.8 28 335-362 14-45 (84)
161 2cuq_A Four and A half LIM dom 37.8 20 0.00069 26.5 2.7 39 335-385 15-53 (80)
162 2ku7_A MLL1 PHD3-CYP33 RRM chi 37.6 43 0.0015 27.1 5.1 32 352-383 7-45 (140)
163 1x3h_A Leupaxin; paxillin fami 37.2 19 0.00065 26.6 2.5 40 335-386 15-54 (80)
164 1x4k_A Skeletal muscle LIM-pro 37.2 19 0.00066 25.9 2.5 40 335-386 5-46 (72)
165 1x61_A Thyroid receptor intera 35.7 27 0.00094 25.1 3.1 38 335-384 5-44 (72)
166 1wew_A DNA-binding family prot 35.1 8.2 0.00028 29.2 0.0 47 335-382 16-72 (78)
167 2l3k_A Rhombotin-2, linker, LI 34.9 58 0.002 26.3 5.4 36 337-384 10-47 (123)
168 1x63_A Skeletal muscle LIM-pro 34.5 24 0.00082 26.2 2.7 40 335-386 15-56 (82)
169 1x4i_A Inhibitor of growth pro 33.8 8 0.00027 28.8 -0.2 45 335-383 6-56 (70)
170 1zfo_A LAsp-1; LIM domain, zin 33.8 21 0.00071 21.8 1.8 27 335-361 3-30 (31)
171 1g47_A Pinch protein; LIM doma 33.5 23 0.00078 25.9 2.4 41 334-386 10-52 (77)
172 3o7a_A PHD finger protein 13 v 33.3 4.8 0.00017 27.9 -1.4 42 339-381 7-51 (52)
173 1iml_A CRIP, cysteine rich int 33.2 16 0.00054 26.9 1.4 37 337-385 2-39 (76)
174 2dj7_A Actin-binding LIM prote 32.8 22 0.00075 26.6 2.2 39 334-384 14-53 (80)
175 2d8v_A Zinc finger FYVE domain 31.6 18 0.00062 26.6 1.4 29 335-364 8-37 (67)
176 2egq_A FHL1 protein; LIM domai 30.8 26 0.00088 25.6 2.3 39 335-385 15-58 (77)
177 1a7i_A QCRP2 (LIM1); LIM domai 30.7 14 0.00047 27.6 0.7 40 335-386 7-47 (81)
178 2l4z_A DNA endonuclease RBBP8, 29.7 20 0.00067 29.5 1.5 38 335-384 61-99 (123)
179 2ehe_A Four and A half LIM dom 29.5 38 0.0013 25.1 3.0 39 335-385 15-55 (82)
180 2d8y_A Eplin protein; LIM doma 28.3 36 0.0012 25.9 2.8 40 335-386 15-55 (91)
181 3f6q_B LIM and senescent cell 27.7 27 0.00094 24.9 1.9 40 335-386 11-52 (72)
182 2ku3_A Bromodomain-containing 27.2 37 0.0013 25.1 2.5 46 334-381 15-65 (71)
183 2jvx_A NF-kappa-B essential mo 27.2 16 0.00055 22.2 0.4 13 373-385 3-15 (28)
184 2fiy_A Protein FDHE homolog; F 24.6 11 0.00039 36.4 -1.0 46 333-382 180-231 (309)
185 2jrp_A Putative cytoplasmic pr 24.0 5 0.00017 30.9 -2.9 40 336-384 3-42 (81)
186 2rsd_A E3 SUMO-protein ligase 23.4 7.4 0.00025 28.6 -2.0 44 337-381 12-64 (68)
187 3mjh_B Early endosome antigen 21.8 16 0.00056 23.2 -0.3 17 335-351 5-21 (34)
188 2iyb_E Testin, TESS, TES; LIM 21.0 42 0.0014 23.7 1.7 38 336-385 3-44 (65)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=6e-13 Score=101.85 Aligned_cols=51 Identities=31% Similarity=0.790 Sum_probs=43.3
Q ss_pred cCCCCCccCcccccC---CccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCCC
Q 013134 333 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~---~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (449)
+.+..|+||++.+.. ++.+||||.||..|+.+|+++ +.+||+||+++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCcC
Confidence 456789999999854 366899999999999999998 578999999987643
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.34 E-value=3.2e-13 Score=98.56 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=41.2
Q ss_pred CCCCCccCcccccC---Ccccc-ccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~---~~~Lp-CgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.+.+|+||++++.+ +..+| |||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 46789999999987 56777 9999999999999987 589999999864
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3e-13 Score=105.44 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.4
Q ss_pred cCCCCCccCcccccCC---ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~---~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+.+..|+||++++..+ +.+||||.||..|+.+|+++ +.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCC
Confidence 3567899999999877 67899999999999999998 5899999998865
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=101.75 Aligned_cols=50 Identities=34% Similarity=0.810 Sum_probs=43.2
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+.+..|+||++.+..+..+ ||||.||..|+.+|+++ +.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 3467899999999877554 99999999999999998 57999999998654
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=101.63 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=45.7
Q ss_pred CCCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcCCCcc
Q 013134 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~ 389 (449)
.+..|+||++.+.+++.+ +|||.||..|+.+|++. +..||+||+++...++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCccccc
Confidence 356899999999999887 99999999999999988 58999999998765443
No 6
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=1.1e-12 Score=100.10 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=43.5
Q ss_pred cCCCCCccCcccccCC-ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 333 AYDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~-~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+.+..|+||++.+.++ +.+||||.||..|+.+|+++ +.+||.||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 3467899999999886 77899999999999999988 5899999998864
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=1e-12 Score=103.07 Aligned_cols=51 Identities=45% Similarity=0.936 Sum_probs=43.8
Q ss_pred cCCCCCccCcccccCC---ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCCC
Q 013134 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~---~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (449)
..+..|+||++.+..+ +.+||||.||..|+.+|+++ +.+||+||+++...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCcc
Confidence 4577899999999866 44699999999999999987 589999999987654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=9e-13 Score=96.09 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=41.2
Q ss_pred CCCCCccCcccccC----CccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~----~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.+..|+||++++.+ ++.+||||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 46789999999865 567899999999999999998 589999999864
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.7e-13 Score=100.90 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=42.9
Q ss_pred cCCCCCccCcccccCC-------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~-------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
..+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 4567899999999876 67899999999999999998 5899999998753
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=2.1e-12 Score=108.84 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=42.4
Q ss_pred CCCCCccCcccccCCc------------------cccccccchHhHHHHHHHhCC-CCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~------------------~LpCgH~Fh~~Cl~~Wl~~~~-~~~~~CP~CR~~l~~~ 386 (449)
.++.|+||++++..+. .++|||.||..||.+|+..+. ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 679999999999999996432 1257999999988654
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.30 E-value=8.2e-13 Score=101.50 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.5
Q ss_pred CCCCCccCcccccCC-------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~-------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 467899999999876 77899999999999999998 58999999998754
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.30 E-value=6e-13 Score=107.86 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.2
Q ss_pred CCCCCccCcccccC---CccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~---~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++++.. ++.+||||.||..|+.+|+++ +.+||+||+++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 46689999999977 567899999999999999987 5899999998764
No 13
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.9e-13 Score=104.82 Aligned_cols=48 Identities=38% Similarity=0.800 Sum_probs=40.3
Q ss_pred CCCCCccCcccccC--------------Ccccc-ccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAK--------------AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~--------------~~~Lp-CgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.++.|+||++++.+ .+.++ |||.||..||.+|+++ +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcch
Confidence 46789999999865 34554 9999999999999998 5899999998754
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5e-13 Score=103.06 Aligned_cols=50 Identities=26% Similarity=0.492 Sum_probs=44.8
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
..+..|+||++.+.+++.+||||.||..|+.+|+.+ +..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCHh
Confidence 346789999999999999999999999999999987 58999999988653
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=98.06 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=43.1
Q ss_pred CCCCCccCcccccCC-------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~-------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.++ ..++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 356899999999876 67899999999999999998 58999999988754
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.7e-12 Score=113.38 Aligned_cols=48 Identities=33% Similarity=0.789 Sum_probs=43.7
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++.+.+|+.+||||.||..|+..|+.+ +.+||.||+++...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence 4579999999999999999999999999999987 58999999998543
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=97.44 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=43.9
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.+++.++|||.||..|+.+|++++ ...||.||+++..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 456899999999999999999999999999999643 57999999988653
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.3e-12 Score=100.28 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=43.8
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
+.+..|+||++.+.+++.+||||.||..|+.+|++. ...||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 346689999999999999999999999999999987 589999999885
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.2e-12 Score=98.06 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=44.9
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
..+..|+||++.+.+++.+||||.||..|+..|++... ....||+||+++..+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 34678999999999999999999999999999997421 157999999988654
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.22 E-value=4.6e-12 Score=105.51 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=40.7
Q ss_pred CCCCCccCcccccCC------------------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~------------------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.++.|+||++.+..+ ..++|||.||..||.+|+++ +.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcce
Confidence 468899999998754 23799999999999999998 689999999864
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=5.9e-12 Score=97.88 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=43.4
Q ss_pred CCCCCccCcccccCCcccc-ccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~Lp-CgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++.+.+++.+| |||.||..|+..|+++.. ...||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 3568999999999999999 999999999999998731 3699999997644
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.22 E-value=5.4e-12 Score=98.86 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.8
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.+|+.++|||.||..|+.+|++++ +.+||.||+++...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 467899999999999999999999999999999864 57999999988653
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.6e-12 Score=98.56 Aligned_cols=49 Identities=33% Similarity=0.757 Sum_probs=43.7
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (449)
.+..|+||++.+.+ +.+||||.||..|+.+|+++ +.+||+||+++...+
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCCC
Confidence 46789999999998 88999999999999999986 689999999987543
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.8e-12 Score=99.73 Aligned_cols=53 Identities=30% Similarity=0.558 Sum_probs=44.7
Q ss_pred cCCCCCccCcccccC----CccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~----~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
..+..|+||++.+.+ ++.+||||.||..|+.+|++++. ....||.||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 346789999999988 88899999999999999998732 137999999987654
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=104.95 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.7
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++.+.+|+.+||||.||..|+..|+..+ ...||.||+++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 356899999999999999999999999999999853 4699999998865
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=95.23 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=45.6
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhC--CCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~~l~~~ 386 (449)
..+..|+||++.+.+++.+||||.||..|+..|+++. ......||.||+++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3467899999999999999999999999999999871 11247999999998754
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=102.01 Aligned_cols=48 Identities=35% Similarity=0.818 Sum_probs=43.4
Q ss_pred CCCCccCcccccCCcc-ccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~-LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+..|+||++.+.+|+. ++|||.||..||..|+..+ +..||.||+++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCH
Confidence 5689999999999999 9999999999999999983 2699999999854
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=98.83 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.6
Q ss_pred cCCCCCccCcccccCCcccc-ccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 333 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~Lp-CgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
..+..|+||++.+.+|+.+| |||.||..||..|+.+.. ...||.||+++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 34678999999999999999 999999999999998632 369999999873
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.2e-11 Score=91.96 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.7
Q ss_pred CCCCccCcc-cccCCc----cccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~-~~~~~~----~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ +..||.||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 568999999 788774 57999999999999998764 47899999998654
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=91.02 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=40.0
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCcccc
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (449)
+.+..|+||++.+.+++.+||||.||..|+.+|+++.. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 35678999999999999999999999999999998521 15799998
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=8.9e-12 Score=97.67 Aligned_cols=54 Identities=24% Similarity=0.476 Sum_probs=45.5
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCC---CCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~---~~~~~CP~CR~~l~~~ 386 (449)
+.+..|+||++.+.+++.+||||.||..|+.+|++++. .....||.||+++...
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34678999999999999999999999999999998631 1247899999998653
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=3.2e-11 Score=95.50 Aligned_cols=54 Identities=30% Similarity=0.591 Sum_probs=45.8
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCC--CCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~l~~~ 386 (449)
..+..|+||++.+.+++.+||||.||..|+..|+++.. .....||.||+++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34678999999999999999999999999999998731 1247899999998654
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.3e-11 Score=99.83 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.4
Q ss_pred CCCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++.+.+++.+ +|||.||..|+..|+.+ +.+||.||+++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 356899999999999888 89999999999999987 5899999998865
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.10 E-value=3.3e-11 Score=100.53 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=44.6
Q ss_pred CCCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.+++.+ +|||.||..|+..|+.. +..||.||+++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 467899999999999998 99999999999999987 58999999998764
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=88.07 Aligned_cols=46 Identities=26% Similarity=0.761 Sum_probs=39.3
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCcccc
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (449)
..+..|+||++.+++++.+||||.||..|+.+|+.+.. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 34678999999999999999999999999999976411 25899998
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.08 E-value=1.3e-11 Score=104.31 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=1.1
Q ss_pred CCCCCccCcccccCC------------------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~------------------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.++.|+||++++.++ ..++|+|.||..||.+|+++ +.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeee
Confidence 467999999998753 12599999999999999998 589999999864
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1.1e-10 Score=97.75 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=43.9
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++.+.+++.+||||.||..|+..|+.++.. ...||.||+++...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh
Confidence 4579999999999999999999999999999987321 25899999988754
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=1.7e-11 Score=103.51 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=43.2
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+..|+||++.+.+|+.+||||.||..|+..|+.++ ...||.||+++..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 45799999999999999999999999999999764 4799999998864
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=7.6e-11 Score=101.24 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.4
Q ss_pred CCCCCccCcccccCC-------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCCC
Q 013134 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~-------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (449)
.+..|+||++.++++ +.++|||.||..|+.+|+++ +.+||+||+++....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcccc
Confidence 467899999999887 78899999999999999987 579999999987654
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=103.34 Aligned_cols=49 Identities=27% Similarity=0.540 Sum_probs=43.9
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++.+.+|+.+||||.||..|+..|+..+ ...||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 56899999999999999999999999999999873 35899999998654
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.02 E-value=1.3e-10 Score=92.81 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=44.5
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||.+.|++|+.++|||.|++.||..|+.. +.+||.||+++...
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCChH
Confidence 46789999999999999999999999999999997 58999999988643
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=6.7e-11 Score=99.91 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.6
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.+|+.+||||.||..|+.+|+..+ +.+||.||+++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 356899999999999999999999999999999874 47999999998653
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.01 E-value=3.8e-10 Score=88.57 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=40.7
Q ss_pred CCCCCccCccccc--CCcccc--ccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~--~~~~Lp--CgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+.+|+||++++. ++..+| |||.||..|+..+++.+ ...||.||+++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCC
Confidence 4678999999985 344555 99999999999988653 57999999998764
No 44
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=90.71 Aligned_cols=52 Identities=25% Similarity=0.619 Sum_probs=42.1
Q ss_pred cCCCCCccCcccccC--Ccccccc-----ccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAK--AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~--~~~LpCg-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
..++.|.||++++++ +..+||+ |.||..||.+|+.++. ..+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 346789999998853 4567996 9999999999998742 25999999998654
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=1.6e-10 Score=103.76 Aligned_cols=48 Identities=33% Similarity=0.672 Sum_probs=42.8
Q ss_pred CCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+..|+||++.+.+++.+ ||||.||..|+..|+..+ ...||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 34899999999999887 999999999999999864 4789999999854
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.97 E-value=1.3e-10 Score=98.45 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=43.5
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++.+.+|+.++|||.||..|+..|+.++ ..+||+||+++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence 356899999999999999999999999999999874 3499999998865
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.97 E-value=2e-10 Score=94.57 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||.+.|++|+.+||||.||+.||..|+.. +.+||.||+++...
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCChh
Confidence 35689999999999999999999999999999986 58999999988653
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.5e-10 Score=84.95 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=40.2
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.+++.+||||.||..|+.+| ...||+||+++...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 46689999999999999999999999998772 47999999988653
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=6.5e-10 Score=107.48 Aligned_cols=49 Identities=16% Similarity=-0.026 Sum_probs=43.8
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||.+.|.+|+.+||||+||..||..|+.++ +.+||.||+++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 466899999999999999999999999999999874 3569999998864
No 50
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=5.6e-10 Score=86.46 Aligned_cols=55 Identities=18% Similarity=0.439 Sum_probs=43.7
Q ss_pred cCCCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcCCCcc
Q 013134 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~ 389 (449)
+..+.|+||++.+...++- .|+|.||..|+.+|+++.. ..+||.||+++..+.++
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCC
Confidence 3457899999999765443 8999999999999998732 27999999998765433
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=3.6e-10 Score=92.75 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=44.4
Q ss_pred CCCCCccCcccccCCcccccc-ccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.|++|+.+||| |.||+.||..|+.+ +.+||.||+++...
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChh
Confidence 466899999999999999999 99999999999987 57999999988653
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=2.6e-10 Score=97.86 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=43.8
Q ss_pred cCCCCCccCcccccCC-------ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~-------~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+.+..|+||++.++++ +.++|||.||..|+.+|+++ +.+||+||+++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChh
Confidence 4567899999999875 67799999999999999998 58999999998754
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.92 E-value=3.2e-10 Score=85.26 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=42.0
Q ss_pred CCCCCccCcccccCCccc--ccccc-chHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L--pCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|.||++...++..+ ||||. ||..|...|.++ +..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhc
Confidence 466899999998888777 99998 999999999987 4799999998853
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.92 E-value=3.3e-10 Score=85.45 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=42.0
Q ss_pred CCCCCccCcccccCCccc--ccccc-chHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L--pCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++...++..+ ||||. ||..|+..|.++ +..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhc
Confidence 356899999999988876 99999 899999999987 5799999998753
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.89 E-value=5.7e-10 Score=112.38 Aligned_cols=49 Identities=33% Similarity=0.611 Sum_probs=43.8
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++.+.+++.+||||.||..|+.+|+.++ +.+||.||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 46899999999999999999999999999999843 58999999988654
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=3.3e-10 Score=99.23 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=43.8
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
.+..|+||++.+.+|+.++|||.||..||.+|++++ ...||+||.++...
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIYE 79 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCCC
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCccccc
Confidence 456899999999999999999999999999999874 35999999987543
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=8e-10 Score=93.47 Aligned_cols=45 Identities=24% Similarity=0.678 Sum_probs=41.1
Q ss_pred CCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+..|+||++.+.+|+.+ ||||.||..|+..|+. ..||.||+++..
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 56899999999999999 9999999999999985 589999998753
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.79 E-value=1.9e-09 Score=97.67 Aligned_cols=49 Identities=16% Similarity=-0.016 Sum_probs=43.5
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||.+.|.+|+.+||||+||..||..|+..+ +.+||.||.++...
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQD 154 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChh
Confidence 45899999999999999999999999999999874 24799999988653
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.4e-09 Score=84.43 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=38.8
Q ss_pred CCCCccCcccccCCcccccccc-chHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+..|+||++.+.+++.+||||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 5689999999999999999999 999999876 489999998854
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5.9e-09 Score=79.55 Aligned_cols=46 Identities=22% Similarity=0.594 Sum_probs=40.1
Q ss_pred cCCCCCccCcccccCCcccccccc-chHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+.+..|.||++...+++.+||||. ||..|... ...||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhce
Confidence 456789999999999999999999 99999973 47999999988653
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.2e-09 Score=86.31 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=42.7
Q ss_pred CCCCCccCcccccCCcccc-ccccchHhHHHHHHHhCC--CCCCCccc--cCcC-CcC
Q 013134 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGL--NEMYSCPT--CRKP-LFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~Lp-CgH~Fh~~Cl~~Wl~~~~--~~~~~CP~--CR~~-l~~ 385 (449)
.+..|+||++.|++|+.+| |||.||+.||..|+.++. ....+||. |++. +..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3568999999999999996 999999999999998631 12369999 9876 543
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=3.8e-09 Score=95.11 Aligned_cols=49 Identities=27% Similarity=0.509 Sum_probs=43.6
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++.+.+|+.++|||.||..|+.+|+..+ ..+||+||.++...
T Consensus 18 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchh
Confidence 56899999999999999999999999999999874 35999999988653
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.2e-08 Score=79.21 Aligned_cols=44 Identities=23% Similarity=0.533 Sum_probs=38.4
Q ss_pred CCCCccCcccccCCcccccccc-chHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++.+.+++.+||||. ||..|+.. ...||+||+++...
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecCc
Confidence 4579999999999999999999 99999853 47999999988653
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.49 E-value=7.6e-08 Score=71.43 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=39.6
Q ss_pred CCCCCccCcccccCCcccccc--c---cchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCg--H---~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.++.|.||+++..++..+||. | .||..|+.+|+..+. +.+||+||.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 467899999987666677965 4 899999999997632 479999998764
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.9e-08 Score=92.23 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.3
Q ss_pred CCCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccc--cCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~--CR~~l~~~ 386 (449)
.+..|+||++.|++|+.. .|||.||+.||..|++++. ...||. ||+.+...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCchh
Confidence 356899999999999985 9999999999999998631 368999 99987654
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.46 E-value=7.7e-08 Score=94.36 Aligned_cols=53 Identities=23% Similarity=0.530 Sum_probs=39.9
Q ss_pred CCCCCccCcccccC----C----ccccccccchHhHHHHHHHhCCCC-------CCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAK----A----KKLLCNHLFHLACLRSWLDQGLNE-------MYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~----~----~~LpCgH~Fh~~Cl~~Wl~~~~~~-------~~~CP~CR~~l~~~ 386 (449)
...+|+||++.+.+ | .-.+|||.||..|+.+|++..... ..+||.||+++..+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45689999998765 2 124799999999999999863110 13699999988654
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.45 E-value=6.7e-08 Score=71.99 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcCCC
Q 013134 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (449)
...|+||.+.|++|+.+ +|||+|.+.||.+|+++ +.+||.+++++...+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhh
Confidence 35799999999999999 99999999999999987 467999999986653
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.43 E-value=5.2e-08 Score=76.48 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=38.5
Q ss_pred CCCCccCcccccCCcccccccc-chHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+..|+||++...+++.+||||. ||..|+..| ..||.||+++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhCe
Confidence 4589999999999999999999 999998653 4999999998654
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=2.2e-07 Score=75.18 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=38.3
Q ss_pred CCCCccCcccccCCccc---cccccchHhHHHHHHHhC----CCCCCCccc--cCcC
Q 013134 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG----LNEMYSCPT--CRKP 382 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~----~~~~~~CP~--CR~~ 382 (449)
..+|+||++++..+..+ +|||.||..|++.+++.. ......||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45899999999877543 799999999999998752 112358999 9988
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.29 E-value=9.5e-08 Score=95.42 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.5
Q ss_pred CCCCCccCcccccCCcccccccc-chHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||+++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 46789999999999999999999 999999876 489999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.97 E-value=3.3e-06 Score=68.05 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=38.7
Q ss_pred CCccCcccccC-CccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 337 ~C~IC~~~~~~-~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
-|.+|--++.. ++.+||+|+||.+|...|.+++ .++||.||.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeee
Confidence 48888887764 4667999999999999999774 5899999999855
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.61 E-value=3.8e-05 Score=72.68 Aligned_cols=53 Identities=19% Similarity=0.471 Sum_probs=42.2
Q ss_pred CCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcCCCcc
Q 013134 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~ 389 (449)
-..|.||.+-...+++= .|+|.||..|+..|++... ...||.|+.+.+...|.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCCC
Confidence 45799999998776543 4999999999999997632 36999999998766443
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.01 E-value=0.029 Score=45.13 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCCCccCccc-ccCCcc--ccccccchHhHHHHHH
Q 013134 335 DDECAICREP-MAKAKK--LLCNHLFHLACLRSWL 366 (449)
Q Consensus 335 ~~~C~IC~~~-~~~~~~--LpCgH~Fh~~Cl~~Wl 366 (449)
+..|.||.++ ..++++ ++|+|.||..|++.+-
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 5689999976 567777 8999999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.32 E-value=0.038 Score=43.73 Aligned_cols=46 Identities=30% Similarity=0.584 Sum_probs=37.2
Q ss_pred CCCCccCcccccCCcccccc-ccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|-.|+-..+ -.+.|. |..|.+|+...+.. +..||+|..+++.+
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcc
Confidence 457999997643 344665 99999999998887 68999999999765
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.73 E-value=0.061 Score=40.10 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=34.7
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
..+..|.||.+. ...+ .|...||..|+...+..-....=.||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 346789999864 2333 6889999999988887644334589999764
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.77 E-value=0.21 Score=55.49 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=42.8
Q ss_pred CCCCccCcccccCCcccccc-ccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
+-.|+|-.+-|++|+.+|.| +.|-+.+|.+|+.+ +.+||.=|+++...
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc
Confidence 44799999999999999998 58999999999987 57999999988654
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.20 E-value=0.065 Score=40.82 Aligned_cols=50 Identities=18% Similarity=0.442 Sum_probs=33.0
Q ss_pred CCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
+..|.+|...-.....+ .|.-.||..|+..-........-.||.|+..+.
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44699998765432233 688999999986543322223468999987654
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.89 E-value=0.48 Score=36.71 Aligned_cols=32 Identities=28% Similarity=0.711 Sum_probs=23.9
Q ss_pred cCCCCCccCcccccCCcccc---ccccchHhHHHHH
Q 013134 333 AYDDECAICREPMAKAKKLL---CNHLFHLACLRSW 365 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~Lp---CgH~Fh~~Cl~~W 365 (449)
..|+.|.||-. +....++| |+-+||..|+++-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46889999973 23344554 7899999999885
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.56 E-value=0.13 Score=37.50 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=32.9
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
..++.|.+|.+. ...+ .|...||..|+..-+.+.....=.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 457789999864 2233 68899999999765544333345799998653
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.78 E-value=0.28 Score=34.18 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=30.3
Q ss_pred CCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
.|.+|.+.-.....+ .|...||..|+..=+.+.+...-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998754333333 688999999997644443333457999975
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.72 E-value=0.24 Score=36.10 Aligned_cols=47 Identities=26% Similarity=0.760 Sum_probs=33.1
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
+.++.|.+|.+. ...+ .|...||..|+..-+.+.+...-.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999874 2333 6888999999987554433335689999753
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.66 E-value=0.18 Score=46.17 Aligned_cols=48 Identities=29% Similarity=0.517 Sum_probs=34.4
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
..++.|.+|.+.- ..+ .|...||..|+.+-+...+.+.=.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4577899998652 233 58899999999776655433346899998754
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.36 E-value=0.53 Score=42.07 Aligned_cols=47 Identities=30% Similarity=0.620 Sum_probs=33.8
Q ss_pred CCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
.++.|.+|.+. +..+ .|.-.||..|+..-+...+.+.=.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999865 3333 58899999998776655333346799998754
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.04 E-value=0.57 Score=36.83 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=33.7
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
+.++.|.+|.+. ...| .|.-.||..|+.+=+.+-+...-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 457789999975 2333 6778899999977665433334579999864
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.91 E-value=0.14 Score=36.73 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=31.7
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
..++.|.+|.+. ...+ .|...||..|+..-+...+...-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 357789999975 2333 688999999997655443333457998864
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.95 E-value=1.7 Score=33.22 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=34.5
Q ss_pred CCCCCccCcccccCCccccc----cccchHhHHHHHHHhCC-CCCCCcccc
Q 013134 334 YDDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQGL-NEMYSCPTC 379 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpC----gH~Fh~~Cl~~Wl~~~~-~~~~~CP~C 379 (449)
....|.+|.|.+++.....| +|.||..|-+..++++. ...-.||.=
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 34579999999998877766 59999999999987642 122456654
No 87
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.77 E-value=0.61 Score=42.04 Aligned_cols=49 Identities=27% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
++.|.+|.+.-+--..-.|...||..|+.+=+.+.+.+.-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5689999965321122268899999999765544333345799998753
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.76 E-value=0.53 Score=38.48 Aligned_cols=48 Identities=23% Similarity=0.611 Sum_probs=31.5
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (449)
.+++.|.+|.+.-+....+ .|+..||..|+......-....-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3578899998874432223 78899999999876542111234677774
No 89
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.51 E-value=0.33 Score=35.56 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=31.8
Q ss_pred CCCCCccCcccccCCc-cc---cccccchHhHHHHHHHhC-CCCCCCccccCcC
Q 013134 334 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQG-LNEMYSCPTCRKP 382 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~-~L---pCgH~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~ 382 (449)
.+..|++|..+..+.. .+ .|...||..|+.---... ....-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999998875332 22 688999999974322110 1235789999763
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.29 E-value=0.28 Score=35.59 Aligned_cols=47 Identities=32% Similarity=0.829 Sum_probs=32.8
Q ss_pred CCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
.++.|.+|.+. ...+ .|...||..|+..-+...+...-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999975 2333 68899999999765544333345799997644
No 91
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.28 E-value=1.5 Score=32.94 Aligned_cols=44 Identities=25% Similarity=0.700 Sum_probs=29.3
Q ss_pred CCCCccCcccccCCccc---c--cc-ccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---p--Cg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
+..| ||...-. ...+ . |. ..||..|+. +...+...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4457 8988533 3333 3 66 689999997 44433345789999864
No 92
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=73.45 E-value=1.5 Score=39.29 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=31.9
Q ss_pred CCCCccCcccccCCc----cc---cccccchHhHHHH------HHHhC-CCCCCCccccCcCC
Q 013134 335 DDECAICREPMAKAK----KL---LCNHLFHLACLRS------WLDQG-LNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~----~L---pCgH~Fh~~Cl~~------Wl~~~-~~~~~~CP~CR~~l 383 (449)
+..|+||...+.+.. .+ .|...||..|..- -+..- ....-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 457999998887653 33 5889999999632 11100 00147999998753
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=73.11 E-value=0.46 Score=35.14 Aligned_cols=47 Identities=34% Similarity=0.767 Sum_probs=32.3
Q ss_pred cCCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
..++.|.+|.+. ...+ .|.-.||..|+..-+..-+...-.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 357789999975 2233 6888999999976544433334579999753
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.91 E-value=0.42 Score=37.92 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=32.9
Q ss_pred CCCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
.+..|.||...-.....+ .|...||..|+..=+..-+...=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 466899999864333333 6889999999975444322233469999764
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.77 E-value=1 Score=36.93 Aligned_cols=45 Identities=31% Similarity=0.692 Sum_probs=30.5
Q ss_pred CCccCcccccCC-ccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 337 ECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 337 ~C~IC~~~~~~~-~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
.|.+|.+.-.+. ..+ .|...||..|+.+-+..-+...=.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653232 333 588999999997666553333458999985
No 96
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.14 E-value=2.8 Score=33.06 Aligned_cols=43 Identities=26% Similarity=0.722 Sum_probs=28.4
Q ss_pred CCCccCcccccCCccc---c--cc-ccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 336 DECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 336 ~~C~IC~~~~~~~~~L---p--Cg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
..| ||..... ...+ . |. ..||..|+. +...+...-.||.|+..
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 346 9998643 2333 3 65 689999996 44433345789999864
No 97
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.69 E-value=3.4 Score=35.40 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=33.0
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHHHHh-------CCCCCCCccccCc
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 381 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~-------~~~~~~~CP~CR~ 381 (449)
..++.|.+|.+.-+----=.|-..||..|+..-+.+ .+.+.=.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467899999986321111178899999999976531 1223468999974
No 98
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.57 E-value=1 Score=34.41 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=30.6
Q ss_pred CCCccCcccccCCccc---cccccchHhHHHHHHHhCCCC-CCCccccCc
Q 013134 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (449)
Q Consensus 336 ~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 381 (449)
..|.+|...-.....+ .|...||..|+.+-+.+-+.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3678888643333444 688999999997655443322 357999975
No 99
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=66.11 E-value=2.6 Score=34.31 Aligned_cols=52 Identities=25% Similarity=0.460 Sum_probs=32.8
Q ss_pred cCCCCCccCccc--ccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 333 AYDDECAICREP--MAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 333 ~~~~~C~IC~~~--~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
..++.|.+|.+. +--...-.|-..||..|+. +.+.+...=.||.|+.....+
T Consensus 13 ~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 457789999853 1111222477899999997 544333334799888766544
No 100
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=65.35 E-value=1.3 Score=40.97 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=27.3
Q ss_pred CCCccCcccccCCccc---cccccchHhHHHHHHHhCCCC-CCCccccCcC
Q 013134 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRKP 382 (449)
Q Consensus 336 ~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~~ 382 (449)
..|.+|...-.....+ .|...||..|+.+-+..-+.. .=.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3577887643233333 688999999998766543332 3479999753
No 101
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=63.38 E-value=1.2 Score=33.31 Aligned_cols=46 Identities=33% Similarity=0.728 Sum_probs=29.2
Q ss_pred CCccCcccccCCccc---cccccchHhHHHHHHHhCCCC-CCCccccCcC
Q 013134 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRKP 382 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~~ 382 (449)
.|.+|...-.....+ .|...||..|+..=+.+.+.+ .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456777543233334 588999999997655543332 4579999753
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.15 E-value=1.1 Score=35.17 Aligned_cols=52 Identities=17% Similarity=0.546 Sum_probs=35.0
Q ss_pred CCCCCccCcccccC--Cccc---cccccchHhHHHHHHHh----CCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~--~~~L---pCgH~Fh~~Cl~~Wl~~----~~~~~~~CP~CR~~l~~ 385 (449)
.+..|.+|.+.-.. ...+ .|...||..|+..-+.. .....=.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46789999976432 2333 68899999999876542 22224589999875543
No 103
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=62.60 E-value=0.96 Score=32.75 Aligned_cols=43 Identities=26% Similarity=0.720 Sum_probs=28.1
Q ss_pred CCCCccCcccccCCccc---c--cc-ccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---p--Cg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
...| ||...-. +..+ . |. ..||..|+. +.+.+...-.||.|++
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8988632 3344 3 55 689999997 5444334578999965
No 104
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.36 E-value=0.74 Score=33.79 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=33.4
Q ss_pred cCCCCCccCcccccC--Cccc---cccccchHhHHHHHHHh---CCCCCCCccccCcCC
Q 013134 333 AYDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ---GLNEMYSCPTCRKPL 383 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~--~~~L---pCgH~Fh~~Cl~~Wl~~---~~~~~~~CP~CR~~l 383 (449)
..+..|.+|...... ...+ .|.-.||..|+..-+.. .....=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 356789999976422 2333 68899999998764322 012246899997643
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.32 E-value=0.96 Score=34.61 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=28.2
Q ss_pred CCccCcccccCCccc---cccccchHhHHHHHHHhCCCCC-CCccccCc
Q 013134 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 381 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~-~~CP~CR~ 381 (449)
.|.+|...-.....+ .|...||..|+..-+.+.+... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355555543333334 5888999999987665533333 48999985
No 106
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=62.14 E-value=1.3 Score=34.97 Aligned_cols=45 Identities=24% Similarity=0.633 Sum_probs=27.5
Q ss_pred cCCCCCccCcccccCCccc---c--cc-ccchHhHHHHHHHhCCCCCCCccc-cCc
Q 013134 333 AYDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPT-CRK 381 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L---p--Cg-H~Fh~~Cl~~Wl~~~~~~~~~CP~-CR~ 381 (449)
+....| ||...-. +..+ . |. ..||..|+. +.......-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 334567 9987432 2233 3 44 689999985 3333333568999 975
No 107
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.03 E-value=25 Score=27.42 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCCCCccCcccccC---C-cc---ccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAK---A-KK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~---~-~~---LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
....|.||-++... + .. -.|+---|+.|..-=...+ ++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCccc
Confidence 35689999998632 1 11 2677778999987755554 689999998764
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.84 E-value=8 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=22.4
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~ 363 (449)
-..|.+|...|..-.+ -.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3579999999875432 3799999999953
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.62 E-value=6.9 Score=29.67 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=29.6
Q ss_pred CCCCccCcccccC-Cccc---cccccchHhHHHHHHHh-CCCCCCCccccCcCC
Q 013134 335 DDECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~-~~~L---pCgH~Fh~~Cl~~Wl~~-~~~~~~~CP~CR~~l 383 (449)
...| ||..+..+ ...+ .|...||..|+.---.. .....-.||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3345 89887642 2222 58899999998422111 112357899998754
No 110
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.61 E-value=4.4 Score=34.27 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=18.5
Q ss_pred cCCCCCccCcccccC--C---ccccccccchHhH
Q 013134 333 AYDDECAICREPMAK--A---KKLLCNHLFHLAC 361 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~--~---~~LpCgH~Fh~~C 361 (449)
..+..|.+|..++.- . .-..|.|.+|..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 356789999999841 1 2235666666655
No 111
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.46 E-value=5.1 Score=32.33 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=19.6
Q ss_pred cCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 346 AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 346 ~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.+++...||+.|. ...+....||.|++.-.
T Consensus 66 ~p~~C~~CG~~F~---------~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFK---------AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCC---------CCSSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeec---------ccCCCCCCCcCCCCCcc
Confidence 3456678999981 12222479999998643
No 112
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=58.16 E-value=1.2 Score=31.10 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=26.3
Q ss_pred CCccCcccccCCcc-c----cccccchHhHHHHHHHhCCCCCCCccccC
Q 013134 337 ECAICREPMAKAKK-L----LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (449)
Q Consensus 337 ~C~IC~~~~~~~~~-L----pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (449)
.|.+|..+..+... + .|.-.||..|+.---....+....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47788887754322 2 47789999996421111001257899996
No 113
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=57.87 E-value=3.5 Score=33.30 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=31.1
Q ss_pred CCCCccCcccccCCc-cc----cccccchHhHHHHH------HHhCCCCCCCccccCcCC
Q 013134 335 DDECAICREPMAKAK-KL----LCNHLFHLACLRSW------LDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~-~L----pCgH~Fh~~Cl~~W------l~~~~~~~~~CP~CR~~l 383 (449)
...|.||..++.+.. .+ .|...||..|+.-= +.......-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999875432 22 57899999997311 111111246899998754
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.16 E-value=6.9 Score=32.85 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=32.1
Q ss_pred cCCCCCccCcccccCCccccccccchHhHHHHH-----HHhC--CCCCCCccccCcC
Q 013134 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSW-----LDQG--LNEMYSCPTCRKP 382 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~W-----l~~~--~~~~~~CP~CR~~ 382 (449)
..++.|.+|.+.-+-.--=.|-..||..|+..- +++- ..+.=.|+.|+.+
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456789999975221111168899999999875 2221 2234689999653
No 115
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.99 E-value=14 Score=29.90 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=28.1
Q ss_pred CCCCCccCccccc-----CCccc----cccccchHhHHHH------HHHhCCCCCCCccccC
Q 013134 334 YDDECAICREPMA-----KAKKL----LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (449)
Q Consensus 334 ~~~~C~IC~~~~~-----~~~~L----pCgH~Fh~~Cl~~------Wl~~~~~~~~~CP~CR 380 (449)
....|.+|...-. .+..| .|+..||..|+.. -+.+. .=.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 4568999987531 12222 7999999999952 22222 35688885
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.92 E-value=7.6 Score=28.97 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=22.6
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~ 363 (449)
+..|.+|...|..-.+ -.||++||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4589999999875433 3799999999963
No 117
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.19 E-value=9.4 Score=27.56 Aligned_cols=39 Identities=26% Similarity=0.705 Sum_probs=30.7
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|.+.+.......-+..||.+| ..|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCC------------CccCCCCCcCCc
Confidence 457999999887654446788999988 689999998853
No 118
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=50.07 E-value=3.5 Score=36.19 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=30.4
Q ss_pred CCCCCccCcccccCCc-cc---cccccchHhHHHHHHH-hCCCCCCCccccCcC
Q 013134 334 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLD-QGLNEMYSCPTCRKP 382 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~-~L---pCgH~Fh~~Cl~~Wl~-~~~~~~~~CP~CR~~ 382 (449)
.+..| +|.....+.. .+ .|...||..|+.---. ....+.-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998754322 22 6889999999842211 112235789999864
No 119
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=49.72 E-value=2.6 Score=31.29 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=29.0
Q ss_pred CCCCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
...| ||..+......+ .|...||..|+.---. ..++.-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 4467 998875533233 5889999999853211 2234578999975
No 120
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.35 E-value=9.3 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.409 Sum_probs=32.3
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
....|+-|-+.+.......-|..||..| ..|-.|++++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 3567999999986555557789999988 699999998864
No 121
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.13 E-value=9 Score=28.60 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
....|.-|-+.........-+..||..| ..|-.|++++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT------------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc------------CeeCCCCCCCC
Confidence 3568999999887654456788999988 58999998874
No 122
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.01 E-value=10 Score=27.36 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|.-|-+.+.......-+..||.+| ..|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC------------CEeCCCCCcCCCC
Confidence 457999999887544446788899988 5899999887653
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.45 E-value=9.9 Score=28.05 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=30.8
Q ss_pred CCCCccCcccccCCc-cccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~-~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+.|-+.+.... ...-+..||..| ..|..|++++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCC
Confidence 568999999987443 335688999988 689999998864
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.27 E-value=2.1 Score=34.78 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=30.1
Q ss_pred CCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
.|.+|.+.-.+...+ .|...||..|+.+-+..-+...-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466777664443444 6889999999976554433334579999653
No 125
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.09 E-value=13 Score=26.96 Aligned_cols=39 Identities=26% Similarity=0.630 Sum_probs=30.4
Q ss_pred CCCCccCcccccCC--ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~--~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.+... ....-|..||.+| ..|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCC
Confidence 56899999998853 3335788999988 689999988764
No 126
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.09 E-value=3.7 Score=30.94 Aligned_cols=46 Identities=30% Similarity=0.611 Sum_probs=28.4
Q ss_pred CCCccCcccccCCccc---cccccchHhHHHHHHHh-----CCCCCCCccccCcC
Q 013134 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 382 (449)
Q Consensus 336 ~~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~-----~~~~~~~CP~CR~~ 382 (449)
..| ||.........+ .|...||..|+.---.. ..+....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 898876533333 58899999998321110 01125899999864
No 127
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.13 E-value=12 Score=26.97 Aligned_cols=39 Identities=23% Similarity=0.591 Sum_probs=30.1
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.........-+..||.+| ..|..|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC------------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT------------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCcceEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999886544446688899988 589999988853
No 128
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.04 E-value=9.9 Score=27.80 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=29.5
Q ss_pred CCCCCccCcccccCCccc-----cccccchHhHHHH------HHHhCCCCCCCccccCc
Q 013134 334 YDDECAICREPMAKAKKL-----LCNHLFHLACLRS------WLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L-----pCgH~Fh~~Cl~~------Wl~~~~~~~~~CP~CR~ 381 (449)
....|.+|..++.+.... .|.-.||..|+.- -+.+.+...-.||.|++
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 456899999987654332 6889999999721 12211112356988863
No 129
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=46.69 E-value=9.2 Score=27.31 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=30.3
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.........-|..||.+| ..|..|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887444446688899988 689999988754
No 130
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.49 E-value=1.9 Score=32.32 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=29.3
Q ss_pred CCCccCcccccCCc-cc---cccccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 336 DECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 336 ~~C~IC~~~~~~~~-~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
..| ||.....+.. .+ .|...||..|+.---....+....||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 358 6987754442 33 6889999999743211122345789999763
No 131
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.42 E-value=15 Score=27.47 Aligned_cols=40 Identities=20% Similarity=0.491 Sum_probs=31.7
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+-|-+.+.......-|..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCCC
Confidence 568999999887544446788899988 6999999988643
No 132
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.30 E-value=6 Score=32.28 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=27.1
Q ss_pred CCCccCcccccC------Cccc----cccccchHhHHHHHH------HhCCCCCCCccccC
Q 013134 336 DECAICREPMAK------AKKL----LCNHLFHLACLRSWL------DQGLNEMYSCPTCR 380 (449)
Q Consensus 336 ~~C~IC~~~~~~------~~~L----pCgH~Fh~~Cl~~Wl------~~~~~~~~~CP~CR 380 (449)
+.|.+|.+.-.. +..| .|+..||..|+.... ... .=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT---TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC---ccCccccC
Confidence 579999875421 1222 789999999987542 222 34677774
No 133
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.85 E-value=18 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
...|+-|-..+.......-|..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCC
Confidence 457999999887654556788999988 68999998886
No 134
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.30 E-value=2.8 Score=34.81 Aligned_cols=45 Identities=20% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
...|..|...|..-++ -.||.+||..|....... ...|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHHHH
Confidence 4579999999865422 389999999997654433 47898886543
No 135
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.12 E-value=15 Score=27.32 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=30.9
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+.|-+.+.......-+..||.+| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC------------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS------------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEEEECCceecccc------------CCccCCCCccCC
Confidence 457999999888544446788999988 689999998854
No 136
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.11 E-value=15 Score=27.97 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.8
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|.-|-+.+.......-+..||.+| ..|-.|++++...
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCCC
Confidence 457999999887654446788999988 6899999988643
No 137
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=44.87 E-value=4.2 Score=32.38 Aligned_cols=43 Identities=21% Similarity=0.573 Sum_probs=28.6
Q ss_pred CCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
.| ||.........+ .|.-.||..|+..=... .++.-.||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 46 787765555444 68899999998542222 223468999974
No 138
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.57 E-value=16 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.617 Sum_probs=30.3
Q ss_pred CCCCccCcccccC----CccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~----~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+.|-+.+.. .....-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCCC
Confidence 4679999998875 33345788999998 689999988753
No 139
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=43.98 E-value=5.2 Score=31.19 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=32.3
Q ss_pred cCCCCCccCcccc--cCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 333 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 333 ~~~~~C~IC~~~~--~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
+.+..|.||.+.- .....+ .|.-.||..|+..-. -+...=.||.|+....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccc
Confidence 4577899999753 112223 688899999986532 1122457999976543
No 140
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.52 E-value=9 Score=30.47 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.2
Q ss_pred chHhHHHHHHHh
Q 013134 357 FHLACLRSWLDQ 368 (449)
Q Consensus 357 Fh~~Cl~~Wl~~ 368 (449)
||++|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 141
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=43.41 E-value=9.1 Score=30.40 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=11.1
Q ss_pred chHhHHHHHHHh
Q 013134 357 FHLACLRSWLDQ 368 (449)
Q Consensus 357 Fh~~Cl~~Wl~~ 368 (449)
||++|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 142
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.14 E-value=14 Score=26.80 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=29.9
Q ss_pred CCCCccCcccccC---Ccc-ccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAK---AKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~---~~~-LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.+.. ... ..-+..||..| ..|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCCC
Confidence 4579999998874 233 35688999988 689999988753
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.05 E-value=3 Score=30.01 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=28.1
Q ss_pred CCCCccCcccccCCccc---c--cc-ccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---p--Cg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
+..| +|.+... +..+ . |. ..||..|+. +...+...-.||.|++
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 8988642 3333 3 66 699999997 4443334568999975
No 144
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.26 E-value=15 Score=27.35 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+-|-+.........-+..||.+| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCSS
T ss_pred CCcCccccCEeccceEEECCceeCccC------------CccccCCCCCCCC
Confidence 458999999887544446788999988 6899999887643
No 145
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.13 E-value=51 Score=28.29 Aligned_cols=45 Identities=20% Similarity=0.484 Sum_probs=28.1
Q ss_pred CCCCCccCcccccC---C--ccccccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 334 YDDECAICREPMAK---A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 334 ~~~~C~IC~~~~~~---~--~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
.+..|++|..++.- . .-..|+|.+|..|- .|.... ..=.|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~--~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEE--QGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSS--SSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCC--CcEeeHHHHH
Confidence 36789999998742 1 23478899999885 222211 1235777764
No 146
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.09 E-value=12 Score=28.74 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~~ 364 (449)
...|.+|...|..-.+ -.||++||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4579999999875433 37999999999643
No 147
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.77 E-value=18 Score=35.86 Aligned_cols=50 Identities=22% Similarity=0.451 Sum_probs=33.3
Q ss_pred CCCCccCcccccCCcc-ccccccchHhHHHHHHHhC-CCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~-LpCgH~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~l~~ 385 (449)
...|++-...++.|.+ ..|.|.-|.. +..|++.. ....-.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCH
Confidence 4679999999988865 5899984443 23444321 1114689999988744
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.19 E-value=1.6 Score=35.86 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=31.1
Q ss_pred CCccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
.|.+|...-.....+ .|...||..|+.+=+..-+...=.||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588887754444444 68899999999764444332335699997644
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.74 E-value=9.3 Score=34.85 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~ 363 (449)
+..|.+|...|..-.+ -.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 5789999999864322 3799999999954
No 150
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.66 E-value=12 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLRSW 365 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~~W 365 (449)
...|.+|...|..-.+ -.||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4579999999875432 389999999997543
No 151
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.38 E-value=1.6 Score=34.68 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=27.9
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
+..|+.|..+++.. =++.+|..|-+.... ...||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~-----~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM-----KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE-----EEECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc-----cccCcchhhHHHH
Confidence 46899999988642 134446777443222 3689999998843
No 152
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.37 E-value=13 Score=28.38 Aligned_cols=30 Identities=20% Similarity=0.641 Sum_probs=23.1
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~~ 364 (449)
...|.+|...|..-.+ -.||++||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3479999999875433 37999999999643
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.98 E-value=10 Score=34.76 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=23.4
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~~ 364 (449)
++.|.+|...|..-.+ -.||++||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 5689999999875432 37999999999653
No 154
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.66 E-value=20 Score=35.34 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCCCccCcccccCCcc-ccccccchHhHHHHHHHhCC-CCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~-LpCgH~Fh~~Cl~~Wl~~~~-~~~~~CP~CR~~l~~ 385 (449)
...|++-...++.|.+ ..|.|.=|.. +..|++... ...-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 4579999999988865 5899984332 334443210 114689999998753
No 155
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.30 E-value=17 Score=27.06 Aligned_cols=39 Identities=23% Similarity=0.623 Sum_probs=30.6
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.+.......-+..||.+| ..|..|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC------------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------CBCSSSCCBCTT
T ss_pred CCccccCCCeecceeEEECCccccHHh------------cCcccCCCccCC
Confidence 567999999887554446788899988 689999998853
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.22 E-value=24 Score=26.47 Aligned_cols=41 Identities=37% Similarity=0.883 Sum_probs=31.0
Q ss_pred CCCCCccCcccccCCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
....|+-|-+.+.....+ .-+..||..| ..|-.|++++...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC------------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc------------CEEcCCCCCcCCC
Confidence 356899999988654333 5678999998 6899999887553
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.95 E-value=6.4 Score=39.47 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCccCcccccCCc----cccccccchHhHHHHHHHhC---CCCCCCccccCcCC
Q 013134 335 DDECAICREPMAKAK----KLLCNHLFHLACLRSWLDQG---LNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~----~LpCgH~Fh~~Cl~~Wl~~~---~~~~~~CP~CR~~l 383 (449)
...|.+|...|..-. .-.||++||..|......-+ ......|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 457999999886432 23899999999987654221 11135677776544
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=38.91 E-value=3.8 Score=29.79 Aligned_cols=43 Identities=26% Similarity=0.719 Sum_probs=27.8
Q ss_pred CCCCccCcccccCCccc---c--cc-ccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---p--Cg-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
+..| +|.... .+..+ . |. ..||..|+. +...+...-.||.|++
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 898853 23333 3 55 799999986 3433334578999975
No 159
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.63 E-value=12 Score=29.07 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=23.2
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHHHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl~~ 364 (449)
...|.+|...|..-.+ -.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4579999999875433 37999999999643
No 160
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.62 E-value=13 Score=28.43 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCCCccCcccccCCcc----ccccccchHhHH
Q 013134 335 DDECAICREPMAKAKK----LLCNHLFHLACL 362 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~----LpCgH~Fh~~Cl 362 (449)
-..|.+|...|..-.+ -.||.+||..|.
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3579999999865433 379999999995
No 161
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.80 E-value=20 Score=26.48 Aligned_cols=39 Identities=23% Similarity=0.609 Sum_probs=30.5
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.+.......-+..||.+| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCTT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCCC
Confidence 457999999887654446788899988 689999998853
No 162
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=37.64 E-value=43 Score=27.11 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=20.1
Q ss_pred cccccchHhHH------HHHHHh-CCCCCCCccccCcCC
Q 013134 352 LCNHLFHLACL------RSWLDQ-GLNEMYSCPTCRKPL 383 (449)
Q Consensus 352 pCgH~Fh~~Cl------~~Wl~~-~~~~~~~CP~CR~~l 383 (449)
-|++.||..|. .+-+.+ .......||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 38889999995 222333 112257899997644
No 163
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.24 E-value=19 Score=26.62 Aligned_cols=40 Identities=20% Similarity=0.603 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+-|-+.+.......-+..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPEC------------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTT------------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecceeEEECCCeEecCc------------CChhhCCCCCCCC
Confidence 457999999887644446678899988 6899999988653
No 164
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.18 E-value=19 Score=25.93 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=30.5
Q ss_pred CCCCccCcccccCC--ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~--~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+.|-+.+... ....-|..||..| ..|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccC------------CcccccCCccCCC
Confidence 45799999998754 3335788899988 5899999887643
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.75 E-value=27 Score=25.11 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=29.3
Q ss_pred CCCCccCcccccCC--ccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 335 ~~~C~IC~~~~~~~--~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
...|..|-+.+... ....=+..||..| ..|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC------------CcccccCCcCC
Confidence 45799999987642 3335688899988 68999999884
No 166
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.07 E-value=8.2 Score=29.20 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=28.5
Q ss_pred CCCCccCcccccCCccc-----cccccchHhHHHHHHHh-----CCCCCCCccccCcC
Q 013134 335 DDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 382 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L-----pCgH~Fh~~Cl~~Wl~~-----~~~~~~~CP~CR~~ 382 (449)
...| ||...-.....+ .|...||..|+.---.. ..+....||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3457 798874333222 58899999998421110 11235789999864
No 167
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.89 E-value=58 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.729 Sum_probs=24.5
Q ss_pred CCccCcccccCC--ccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 337 ECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 337 ~C~IC~~~~~~~--~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
.|+-|-..+... ....-+..||..| ..|-.|++++.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~C------------F~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLEC------------FKCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTT------------CBCTTTCCBCC
T ss_pred cccCCCCeecCCceEEEECCccccccc------------CccccCCCCCC
Confidence 688888877642 2224577888877 57777877773
No 168
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.55 E-value=24 Score=26.20 Aligned_cols=40 Identities=18% Similarity=0.595 Sum_probs=30.5
Q ss_pred CCCCccCcccccCC--ccccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~--~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+.|-+.+... ....-|..||.+| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCCC
Confidence 46899999988743 2335688899988 6899999988653
No 169
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.80 E-value=8 Score=28.76 Aligned_cols=45 Identities=24% Similarity=0.687 Sum_probs=26.9
Q ss_pred CCCCccCcccccCCccc---c--c-cccchHhHHHHHHHhCCCCCCCccccCcCC
Q 013134 335 DDECAICREPMAKAKKL---L--C-NHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L---p--C-gH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (449)
...| +|...- ....+ . | ...||..|+. +.......-.||.|+...
T Consensus 6 ~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3345 587753 23333 2 3 2689999986 333333356899998654
No 170
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.77 E-value=21 Score=21.82 Aligned_cols=27 Identities=26% Similarity=0.640 Sum_probs=18.2
Q ss_pred CCCCccCcccccCCccc-cccccchHhH
Q 013134 335 DDECAICREPMAKAKKL-LCNHLFHLAC 361 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L-pCgH~Fh~~C 361 (449)
.+.|+.|-...-...++ .-|..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEEECCeEecccC
Confidence 35688888876555444 4567788877
No 171
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.53 E-value=23 Score=25.91 Aligned_cols=41 Identities=27% Similarity=0.583 Sum_probs=31.1
Q ss_pred CCCCCccCcccccCC-cc-ccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 334 YDDECAICREPMAKA-KK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~-~~-LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
....|+-|.+..... .. ..-|..||..| ..|-.|++++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCCC
Confidence 356899999998643 22 36788999988 6899999988653
No 172
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=33.32 E-value=4.8 Score=27.92 Aligned_cols=42 Identities=26% Similarity=0.722 Sum_probs=25.4
Q ss_pred ccCcccccCCccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 339 AICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 339 ~IC~~~~~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
-||..+......+ .|+..||..|+.---. ..++.-.||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTTCCGG-GCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccCCCcc-cCCCcEECcCCCC
Confidence 3576654432222 5888999999753211 2234678999975
No 173
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.19 E-value=16 Score=26.88 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=22.3
Q ss_pred CCccCcccccCCc-cccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 337 ECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 337 ~C~IC~~~~~~~~-~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
.|+-|-+.+.... ...-|..||..| ..|..|++++..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC------------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT------------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEECCccccCCC------------CCccccCccCCC
Confidence 4666776655322 223466777766 567777776654
No 174
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.84 E-value=22 Score=26.62 Aligned_cols=39 Identities=28% Similarity=0.701 Sum_probs=30.1
Q ss_pred CCCCCccCcccccCCcc-ccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 334 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 334 ~~~~C~IC~~~~~~~~~-LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
....|+-|-+.+..... ..-+..||..| ..|-.|++++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccccc------------CCcCcCCCCcC
Confidence 35689999998864433 35678899988 68999998875
No 175
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=31.59 E-value=18 Score=26.55 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=22.2
Q ss_pred CCCCccCcccccCCccccc-cccchHhHHHH
Q 013134 335 DDECAICREPMAKAKKLLC-NHLFHLACLRS 364 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~LpC-gH~Fh~~Cl~~ 364 (449)
..-|.||.++ ..-+-+-| |-+||..|.++
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHH
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHH
Confidence 4579999998 33455688 88999999655
No 176
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.76 E-value=26 Score=25.63 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=29.9
Q ss_pred CCCCccCcccccC-----CccccccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~~-----~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+-|-+.+.. .....=+..||..| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT------------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc------------CEehhcCCCCCC
Confidence 4679999998874 23335678899988 689999998853
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.71 E-value=14 Score=27.61 Aligned_cols=40 Identities=28% Similarity=0.592 Sum_probs=29.9
Q ss_pred CCCCccCcccccCCc-cccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~-~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+.|-+.+.... ...-+..||.+| ..|-.|++++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCC------------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSS------------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEeCCccccccc------------CccCCCCCCCCCC
Confidence 467999999886443 335788899988 5899999888554
No 178
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.72 E-value=20 Score=29.47 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCCCccCcccccCCc-cccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~-~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
...|+-|-+...... ...-|..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc------------cCcCcCCCccc
Confidence 357999999887664 346788999998 68999999885
No 179
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.51 E-value=38 Score=25.08 Aligned_cols=39 Identities=26% Similarity=0.735 Sum_probs=29.4
Q ss_pred CCCCccCccccc-CCccc-cccccchHhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 335 DDECAICREPMA-KAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 335 ~~~C~IC~~~~~-~~~~L-pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
...|+.|-+.+. +...+ .=|..||..| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGC------------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTT------------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEeCCccccccC------------CeecCCCCccCC
Confidence 457999999887 23334 3588899988 689999988754
No 180
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.25 E-value=36 Score=25.91 Aligned_cols=40 Identities=25% Similarity=0.809 Sum_probs=31.2
Q ss_pred CCCCccCcccccCCcc-ccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~-LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+-|-+.+..... ..-+..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISC------------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTT------------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEEECCCEECCCC------------CeeCCCCCCCCCC
Confidence 5689999999875433 46788999988 6899999888654
No 181
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.71 E-value=27 Score=24.87 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=30.6
Q ss_pred CCCCccCcccccCCcc--ccccccchHhHHHHHHHhCCCCCCCccccCcCCcCC
Q 013134 335 DDECAICREPMAKAKK--LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~--LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (449)
...|+-|...+..... ..=|..||..| ..|-.|.+++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C------------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT------------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC------------CcccCCCCCCCCC
Confidence 5689999999875532 25678899988 5899999887653
No 182
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=27.24 E-value=37 Score=25.12 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCCCCccCcccc--cCCccc---cccccchHhHHHHHHHhCCCCCCCccccCc
Q 013134 334 YDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (449)
Q Consensus 334 ~~~~C~IC~~~~--~~~~~L---pCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (449)
.++.|.||.+.- .....+ .|.-.||..|+..-. -+...=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 467899998763 222333 688999999986421 1122357999975
No 183
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=27.16 E-value=16 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.1
Q ss_pred CCCccccCcCCcC
Q 013134 373 MYSCPTCRKPLFV 385 (449)
Q Consensus 373 ~~~CP~CR~~l~~ 385 (449)
...||+|+...++
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4689999987654
No 184
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.64 E-value=11 Score=36.36 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=28.5
Q ss_pred cCCCCCccCcccccCCccc----ccc--ccchHhHHHHHHHhCCCCCCCccccCcC
Q 013134 333 AYDDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (449)
Q Consensus 333 ~~~~~C~IC~~~~~~~~~L----pCg--H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (449)
.....|++|-......+.. .=| |..|.-|-..|-.. +..||.|-.+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 3467899999875332111 122 44556677777555 5899999765
No 185
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.99 E-value=5 Score=30.88 Aligned_cols=40 Identities=23% Similarity=0.624 Sum_probs=22.4
Q ss_pred CCCccCcccccCCccccccccchHhHHHHHHHhCCCCCCCccccCcCCc
Q 013134 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (449)
Q Consensus 336 ~~C~IC~~~~~~~~~LpCgH~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (449)
..|+.|..++..... +..|..|-+..-. ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~----~~~C~~C~~~~~~-----~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD----TAHCETCAKDFSL-----QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS----EEECTTTCCEEEE-----EEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC----ceECccccccCCC-----cccCcchhhHHH
Confidence 578888888754322 2334445322111 247888887763
No 186
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=23.41 E-value=7.4 Score=28.61 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=25.6
Q ss_pred CCccCcccccCCccc-----cccccchHhHHHHH---HH-hCCCCCCCccccCc
Q 013134 337 ECAICREPMAKAKKL-----LCNHLFHLACLRSW---LD-QGLNEMYSCPTCRK 381 (449)
Q Consensus 337 ~C~IC~~~~~~~~~L-----pCgH~Fh~~Cl~~W---l~-~~~~~~~~CP~CR~ 381 (449)
.| ||.........+ .|...||..|+.-- .. ...++.-.||.||.
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 46 797665544433 37789999997210 00 00112467999985
No 187
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.80 E-value=16 Score=23.15 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=12.1
Q ss_pred CCCCccCcccccCCccc
Q 013134 335 DDECAICREPMAKAKKL 351 (449)
Q Consensus 335 ~~~C~IC~~~~~~~~~L 351 (449)
+-.|++|+.++..+..|
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 35799999888765443
No 188
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.96 E-value=42 Score=23.72 Aligned_cols=38 Identities=24% Similarity=0.558 Sum_probs=29.0
Q ss_pred CCCccCcccccC--Cccccccccch--HhHHHHHHHhCCCCCCCccccCcCCcC
Q 013134 336 DECAICREPMAK--AKKLLCNHLFH--LACLRSWLDQGLNEMYSCPTCRKPLFV 385 (449)
Q Consensus 336 ~~C~IC~~~~~~--~~~LpCgH~Fh--~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (449)
..|+-|-+.+.. .....-|..|| .+| ..|-.|++++..
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~C------------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTEC------------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTT------------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCC------------EECCCCCCcCCC
Confidence 368999998874 33445788999 888 689999988853
Done!